Multiple sequence alignment - TraesCS4A01G124600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G124600 chr4A 100.000 5089 0 0 1 5089 157572518 157567430 0.000000e+00 9398.0
1 TraesCS4A01G124600 chr4B 97.071 3004 72 6 812 3800 394378241 394381243 0.000000e+00 5046.0
2 TraesCS4A01G124600 chr4B 92.597 824 27 14 3829 4630 394381233 394382044 0.000000e+00 1153.0
3 TraesCS4A01G124600 chr4B 95.188 478 20 3 4615 5089 394382058 394382535 0.000000e+00 752.0
4 TraesCS4A01G124600 chr4B 90.705 312 27 2 124 433 671855432 671855121 1.020000e-111 414.0
5 TraesCS4A01G124600 chr4B 89.329 328 12 4 505 809 394377858 394378185 1.720000e-104 390.0
6 TraesCS4A01G124600 chr4D 96.124 3096 74 9 751 3800 317183996 317187091 0.000000e+00 5011.0
7 TraesCS4A01G124600 chr4D 90.815 871 40 16 4100 4945 317187905 317188760 0.000000e+00 1129.0
8 TraesCS4A01G124600 chr4D 92.780 277 13 4 3829 4102 317187081 317187353 1.330000e-105 394.0
9 TraesCS4A01G124600 chr4D 89.231 325 19 3 430 739 317183225 317183548 4.780000e-105 392.0
10 TraesCS4A01G124600 chr4D 95.968 124 5 0 1 124 317183112 317183235 8.640000e-48 202.0
11 TraesCS4A01G124600 chr7A 92.207 1296 61 13 3829 5089 347283611 347284901 0.000000e+00 1797.0
12 TraesCS4A01G124600 chr7A 90.385 312 26 4 121 429 4785072 4784762 1.710000e-109 407.0
13 TraesCS4A01G124600 chr7A 93.388 121 8 0 3680 3800 347283501 347283621 4.050000e-41 180.0
14 TraesCS4A01G124600 chr2A 91.830 306 24 1 124 428 434580264 434579959 4.710000e-115 425.0
15 TraesCS4A01G124600 chr5B 90.625 320 27 3 116 433 482295647 482295329 6.090000e-114 422.0
16 TraesCS4A01G124600 chr3A 91.531 307 25 1 123 428 379841700 379841394 6.090000e-114 422.0
17 TraesCS4A01G124600 chr3B 91.176 306 26 1 123 427 131077086 131077391 1.020000e-111 414.0
18 TraesCS4A01G124600 chr3B 90.909 308 27 1 122 428 473229537 473229844 3.670000e-111 412.0
19 TraesCS4A01G124600 chr2B 91.176 306 26 1 124 428 650786264 650785959 1.020000e-111 414.0
20 TraesCS4A01G124600 chr2B 90.909 308 26 2 122 427 757357820 757357513 3.670000e-111 412.0
21 TraesCS4A01G124600 chr1A 83.130 409 63 5 1052 1455 256708292 256708699 8.050000e-98 368.0
22 TraesCS4A01G124600 chr1A 77.882 321 46 10 1998 2316 256711713 256712010 5.240000e-40 176.0
23 TraesCS4A01G124600 chr1A 84.884 172 25 1 3493 3663 256717035 256717206 6.770000e-39 172.0
24 TraesCS4A01G124600 chr1A 95.349 86 4 0 1916 2001 256711331 256711416 2.470000e-28 137.0
25 TraesCS4A01G124600 chr1A 94.253 87 5 0 2951 3037 256712383 256712469 3.200000e-27 134.0
26 TraesCS4A01G124600 chr1A 85.965 114 16 0 1491 1604 256709080 256709193 6.920000e-24 122.0
27 TraesCS4A01G124600 chr1A 91.045 67 6 0 3103 3169 256713530 256713596 1.950000e-14 91.6
28 TraesCS4A01G124600 chr7B 84.293 382 52 6 1080 1455 405068366 405067987 2.900000e-97 366.0
29 TraesCS4A01G124600 chr7B 94.624 93 5 0 2374 2466 405061840 405061748 1.480000e-30 145.0
30 TraesCS4A01G124600 chr7B 92.105 76 5 1 2877 2952 405056051 405055977 6.970000e-19 106.0
31 TraesCS4A01G124600 chr7B 89.552 67 7 0 3103 3169 405054175 405054109 9.080000e-13 86.1
32 TraesCS4A01G124600 chr1D 83.140 172 28 1 3493 3663 202296005 202296176 6.820000e-34 156.0
33 TraesCS4A01G124600 chr1D 94.737 95 5 0 2946 3040 202291357 202291451 1.140000e-31 148.0
34 TraesCS4A01G124600 chr1D 94.382 89 4 1 1368 1455 206044139 206044227 8.890000e-28 135.0
35 TraesCS4A01G124600 chr1D 85.965 114 16 0 1491 1604 206044608 206044721 6.920000e-24 122.0
36 TraesCS4A01G124600 chr1D 94.737 76 3 1 2877 2952 202290490 202290564 3.220000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G124600 chr4A 157567430 157572518 5088 True 9398.00 9398 100.00000 1 5089 1 chr4A.!!$R1 5088
1 TraesCS4A01G124600 chr4B 394377858 394382535 4677 False 1835.25 5046 93.54625 505 5089 4 chr4B.!!$F1 4584
2 TraesCS4A01G124600 chr4D 317183112 317188760 5648 False 1425.60 5011 92.98360 1 4945 5 chr4D.!!$F1 4944
3 TraesCS4A01G124600 chr7A 347283501 347284901 1400 False 988.50 1797 92.79750 3680 5089 2 chr7A.!!$F1 1409

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
141 142 0.030504 TGCGAACCAACATGTGCTTG 59.969 50.000 0.00 0.00 0.00 4.01 F
290 291 0.032678 CGAGGCGCCTATGATGACTT 59.967 55.000 32.97 2.04 0.00 3.01 F
364 365 0.032952 AGGATGTACGTGTGTGCGTT 59.967 50.000 0.00 0.00 43.04 4.84 F
371 372 0.249953 ACGTGTGTGCGTTTATGGGA 60.250 50.000 0.00 0.00 43.04 4.37 F
385 386 0.601046 ATGGGATGAGTGTATGCGCG 60.601 55.000 0.00 0.00 0.00 6.86 F
388 389 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49 F
809 1292 1.003972 ACGAACATGCGCCAAATATCG 60.004 47.619 4.18 10.30 35.36 2.92 F
1489 2013 1.145119 GTTCACCCTTCCCTTTCCAGT 59.855 52.381 0.00 0.00 0.00 4.00 F
3086 3610 0.610232 GCAGTCCAGGCATTCAAGGT 60.610 55.000 0.00 0.00 0.00 3.50 F
3868 4398 0.025513 GCATCGTCAAGTCGCATCAC 59.974 55.000 0.00 0.00 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 2579 0.379669 GCTCTGTTGATTGGCCATCG 59.620 55.000 6.09 0.00 34.08 3.84 R
2177 2701 3.629398 GCTCGAGTCATTCCCATTTTCAT 59.371 43.478 15.13 0.00 0.00 2.57 R
2292 2816 4.142160 CCAGACATTTCATCACTCCGACTA 60.142 45.833 0.00 0.00 0.00 2.59 R
2381 2905 1.953559 ACGCAGAACATCACACAAGT 58.046 45.000 0.00 0.00 0.00 3.16 R
2536 3060 5.667626 ACTCTTTCCTTAATGCAGGGATAGA 59.332 40.000 14.77 14.77 35.79 1.98 R
2763 3287 3.815401 CCAGGGCTTTCTTATAATGGTCG 59.185 47.826 0.00 0.00 0.00 4.79 R
2781 3305 7.533426 CAGATTTGTTATTTGAGACTTCCAGG 58.467 38.462 0.00 0.00 0.00 4.45 R
3237 3761 0.824109 CGACAGAGGCCATCACCTTA 59.176 55.000 5.01 0.00 41.32 2.69 R
3952 4485 1.987770 GGATTGTGCGCTGAAACATTG 59.012 47.619 9.73 0.00 0.00 2.82 R
4958 6127 3.313012 AAGCACAACATAGACGTAGCA 57.687 42.857 0.00 0.00 0.00 3.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
69 70 1.270732 GCAAATCCATGCAACAACCCA 60.271 47.619 0.00 0.00 45.70 4.51
75 76 1.619827 CCATGCAACAACCCATTCAGT 59.380 47.619 0.00 0.00 0.00 3.41
124 125 0.250901 TTCCAAGGAAGACAGCCTGC 60.251 55.000 0.00 0.00 35.50 4.85
125 126 2.037136 CCAAGGAAGACAGCCTGCG 61.037 63.158 0.00 0.00 35.50 5.18
126 127 1.004560 CAAGGAAGACAGCCTGCGA 60.005 57.895 0.00 0.00 35.50 5.10
127 128 0.603707 CAAGGAAGACAGCCTGCGAA 60.604 55.000 0.00 0.00 35.50 4.70
128 129 0.603975 AAGGAAGACAGCCTGCGAAC 60.604 55.000 0.00 0.00 35.50 3.95
129 130 2.035442 GGAAGACAGCCTGCGAACC 61.035 63.158 0.00 0.00 0.00 3.62
130 131 1.301716 GAAGACAGCCTGCGAACCA 60.302 57.895 0.00 0.00 0.00 3.67
131 132 0.884704 GAAGACAGCCTGCGAACCAA 60.885 55.000 0.00 0.00 0.00 3.67
132 133 1.166531 AAGACAGCCTGCGAACCAAC 61.167 55.000 0.00 0.00 0.00 3.77
133 134 1.891919 GACAGCCTGCGAACCAACA 60.892 57.895 0.00 0.00 0.00 3.33
134 135 1.228245 ACAGCCTGCGAACCAACAT 60.228 52.632 0.00 0.00 0.00 2.71
135 136 1.210931 CAGCCTGCGAACCAACATG 59.789 57.895 0.00 0.00 0.00 3.21
136 137 1.228245 AGCCTGCGAACCAACATGT 60.228 52.632 0.00 0.00 0.00 3.21
137 138 1.081242 GCCTGCGAACCAACATGTG 60.081 57.895 0.00 0.00 0.00 3.21
138 139 1.081242 CCTGCGAACCAACATGTGC 60.081 57.895 0.00 0.00 0.00 4.57
139 140 1.518056 CCTGCGAACCAACATGTGCT 61.518 55.000 0.00 0.00 0.00 4.40
140 141 0.311790 CTGCGAACCAACATGTGCTT 59.688 50.000 0.00 0.00 0.00 3.91
141 142 0.030504 TGCGAACCAACATGTGCTTG 59.969 50.000 0.00 0.00 0.00 4.01
142 143 0.310543 GCGAACCAACATGTGCTTGA 59.689 50.000 0.00 0.00 0.00 3.02
143 144 1.268999 GCGAACCAACATGTGCTTGAA 60.269 47.619 0.00 0.00 0.00 2.69
144 145 2.607771 GCGAACCAACATGTGCTTGAAT 60.608 45.455 0.00 0.00 0.00 2.57
145 146 2.981805 CGAACCAACATGTGCTTGAATG 59.018 45.455 0.00 0.00 0.00 2.67
146 147 3.319755 GAACCAACATGTGCTTGAATGG 58.680 45.455 0.00 3.76 35.04 3.16
147 148 2.318908 ACCAACATGTGCTTGAATGGT 58.681 42.857 9.79 9.79 36.34 3.55
148 149 2.699846 ACCAACATGTGCTTGAATGGTT 59.300 40.909 9.79 0.00 37.18 3.67
149 150 3.894427 ACCAACATGTGCTTGAATGGTTA 59.106 39.130 9.79 0.00 37.18 2.85
150 151 4.022068 ACCAACATGTGCTTGAATGGTTAG 60.022 41.667 9.79 0.00 37.18 2.34
151 152 4.218200 CCAACATGTGCTTGAATGGTTAGA 59.782 41.667 0.00 0.00 0.00 2.10
152 153 5.396484 CAACATGTGCTTGAATGGTTAGAG 58.604 41.667 0.00 0.00 0.00 2.43
153 154 4.012374 ACATGTGCTTGAATGGTTAGAGG 58.988 43.478 0.00 0.00 0.00 3.69
154 155 3.071874 TGTGCTTGAATGGTTAGAGGG 57.928 47.619 0.00 0.00 0.00 4.30
155 156 2.642311 TGTGCTTGAATGGTTAGAGGGA 59.358 45.455 0.00 0.00 0.00 4.20
156 157 3.010420 GTGCTTGAATGGTTAGAGGGAC 58.990 50.000 0.00 0.00 0.00 4.46
157 158 2.280628 GCTTGAATGGTTAGAGGGACG 58.719 52.381 0.00 0.00 0.00 4.79
158 159 2.093658 GCTTGAATGGTTAGAGGGACGA 60.094 50.000 0.00 0.00 0.00 4.20
159 160 3.432326 GCTTGAATGGTTAGAGGGACGAT 60.432 47.826 0.00 0.00 0.00 3.73
160 161 3.819564 TGAATGGTTAGAGGGACGATG 57.180 47.619 0.00 0.00 0.00 3.84
161 162 2.434336 TGAATGGTTAGAGGGACGATGG 59.566 50.000 0.00 0.00 0.00 3.51
162 163 2.176247 ATGGTTAGAGGGACGATGGT 57.824 50.000 0.00 0.00 0.00 3.55
163 164 2.832643 TGGTTAGAGGGACGATGGTA 57.167 50.000 0.00 0.00 0.00 3.25
164 165 3.323774 TGGTTAGAGGGACGATGGTAT 57.676 47.619 0.00 0.00 0.00 2.73
165 166 3.228453 TGGTTAGAGGGACGATGGTATC 58.772 50.000 0.00 0.00 0.00 2.24
166 167 2.561858 GGTTAGAGGGACGATGGTATCC 59.438 54.545 0.00 0.00 0.00 2.59
176 177 3.844063 TGGTATCCCCAACCCACC 58.156 61.111 0.00 0.00 41.50 4.61
177 178 1.151565 TGGTATCCCCAACCCACCA 60.152 57.895 0.00 0.00 41.50 4.17
178 179 1.211567 TGGTATCCCCAACCCACCAG 61.212 60.000 0.00 0.00 41.50 4.00
179 180 1.613061 GTATCCCCAACCCACCAGG 59.387 63.158 0.00 0.00 43.78 4.45
190 191 2.976099 CCACCAGGGTTCAAATCCC 58.024 57.895 0.00 0.00 44.90 3.85
195 196 4.834911 GGGTTCAAATCCCGGTGT 57.165 55.556 0.00 0.00 35.27 4.16
196 197 3.045518 GGGTTCAAATCCCGGTGTT 57.954 52.632 0.00 0.00 35.27 3.32
197 198 0.885879 GGGTTCAAATCCCGGTGTTC 59.114 55.000 0.00 0.00 35.27 3.18
198 199 1.611519 GGTTCAAATCCCGGTGTTCA 58.388 50.000 0.00 0.00 0.00 3.18
199 200 1.268625 GGTTCAAATCCCGGTGTTCAC 59.731 52.381 0.00 0.00 0.00 3.18
200 201 1.950909 GTTCAAATCCCGGTGTTCACA 59.049 47.619 0.00 0.00 0.00 3.58
201 202 2.556622 GTTCAAATCCCGGTGTTCACAT 59.443 45.455 0.00 0.00 0.00 3.21
202 203 2.870175 TCAAATCCCGGTGTTCACATT 58.130 42.857 0.00 0.00 0.00 2.71
203 204 3.226777 TCAAATCCCGGTGTTCACATTT 58.773 40.909 0.00 0.39 0.00 2.32
204 205 4.399219 TCAAATCCCGGTGTTCACATTTA 58.601 39.130 0.00 0.00 0.00 1.40
205 206 5.013547 TCAAATCCCGGTGTTCACATTTAT 58.986 37.500 0.00 0.00 0.00 1.40
206 207 5.478679 TCAAATCCCGGTGTTCACATTTATT 59.521 36.000 0.00 0.00 0.00 1.40
207 208 5.576447 AATCCCGGTGTTCACATTTATTC 57.424 39.130 0.00 0.00 0.00 1.75
208 209 3.349022 TCCCGGTGTTCACATTTATTCC 58.651 45.455 0.00 0.00 0.00 3.01
209 210 3.009695 TCCCGGTGTTCACATTTATTCCT 59.990 43.478 0.00 0.00 0.00 3.36
210 211 3.128589 CCCGGTGTTCACATTTATTCCTG 59.871 47.826 0.00 0.00 0.00 3.86
211 212 3.128589 CCGGTGTTCACATTTATTCCTGG 59.871 47.826 0.00 0.00 0.00 4.45
212 213 4.006989 CGGTGTTCACATTTATTCCTGGA 58.993 43.478 5.32 0.00 0.00 3.86
213 214 4.640201 CGGTGTTCACATTTATTCCTGGAT 59.360 41.667 0.00 0.00 0.00 3.41
214 215 5.125417 CGGTGTTCACATTTATTCCTGGATT 59.875 40.000 0.00 0.00 0.00 3.01
215 216 6.350110 CGGTGTTCACATTTATTCCTGGATTT 60.350 38.462 0.00 0.00 0.00 2.17
216 217 7.148154 CGGTGTTCACATTTATTCCTGGATTTA 60.148 37.037 0.00 0.00 0.00 1.40
217 218 8.695456 GGTGTTCACATTTATTCCTGGATTTAT 58.305 33.333 0.00 0.00 0.00 1.40
223 224 9.754382 CACATTTATTCCTGGATTTATTTCAGG 57.246 33.333 0.00 0.00 46.91 3.86
233 234 8.792831 CTGGATTTATTTCAGGATTTTCGATG 57.207 34.615 0.00 0.00 0.00 3.84
234 235 8.518430 TGGATTTATTTCAGGATTTTCGATGA 57.482 30.769 0.00 0.00 0.00 2.92
235 236 9.135189 TGGATTTATTTCAGGATTTTCGATGAT 57.865 29.630 0.00 0.00 0.00 2.45
236 237 9.403110 GGATTTATTTCAGGATTTTCGATGATG 57.597 33.333 0.00 0.00 0.00 3.07
237 238 8.807667 ATTTATTTCAGGATTTTCGATGATGC 57.192 30.769 0.00 0.00 0.00 3.91
238 239 3.950087 TTCAGGATTTTCGATGATGCG 57.050 42.857 0.00 0.00 0.00 4.73
239 240 1.599071 TCAGGATTTTCGATGATGCGC 59.401 47.619 0.00 0.00 0.00 6.09
240 241 1.331447 CAGGATTTTCGATGATGCGCA 59.669 47.619 14.96 14.96 0.00 6.09
241 242 2.031420 CAGGATTTTCGATGATGCGCAT 60.031 45.455 25.66 25.66 40.77 4.73
242 243 2.620115 AGGATTTTCGATGATGCGCATT 59.380 40.909 26.12 9.76 37.34 3.56
243 244 3.067180 AGGATTTTCGATGATGCGCATTT 59.933 39.130 26.12 15.47 37.34 2.32
244 245 4.275689 AGGATTTTCGATGATGCGCATTTA 59.724 37.500 26.12 17.16 37.34 1.40
245 246 4.614284 GGATTTTCGATGATGCGCATTTAG 59.386 41.667 26.12 15.18 37.34 1.85
246 247 4.614555 TTTTCGATGATGCGCATTTAGT 57.385 36.364 26.12 10.79 37.34 2.24
247 248 3.590720 TTCGATGATGCGCATTTAGTG 57.409 42.857 26.12 13.62 37.34 2.74
248 249 1.866601 TCGATGATGCGCATTTAGTGG 59.133 47.619 26.12 12.00 37.34 4.00
249 250 1.069703 CGATGATGCGCATTTAGTGGG 60.070 52.381 26.12 6.81 43.21 4.61
250 251 2.221169 GATGATGCGCATTTAGTGGGA 58.779 47.619 26.12 1.80 43.02 4.37
251 252 1.667236 TGATGCGCATTTAGTGGGAG 58.333 50.000 26.12 0.00 43.02 4.30
252 253 0.947244 GATGCGCATTTAGTGGGAGG 59.053 55.000 26.12 0.00 43.02 4.30
253 254 0.546122 ATGCGCATTTAGTGGGAGGA 59.454 50.000 19.28 0.00 43.02 3.71
254 255 0.107703 TGCGCATTTAGTGGGAGGAG 60.108 55.000 5.66 0.00 43.02 3.69
255 256 0.178068 GCGCATTTAGTGGGAGGAGA 59.822 55.000 0.30 0.00 43.02 3.71
256 257 1.941325 CGCATTTAGTGGGAGGAGAC 58.059 55.000 0.00 0.00 43.02 3.36
257 258 1.802880 CGCATTTAGTGGGAGGAGACG 60.803 57.143 0.00 0.00 43.02 4.18
258 259 1.207329 GCATTTAGTGGGAGGAGACGT 59.793 52.381 0.00 0.00 0.00 4.34
259 260 2.354805 GCATTTAGTGGGAGGAGACGTT 60.355 50.000 0.00 0.00 0.00 3.99
260 261 3.868754 GCATTTAGTGGGAGGAGACGTTT 60.869 47.826 0.00 0.00 0.00 3.60
261 262 3.672767 TTTAGTGGGAGGAGACGTTTC 57.327 47.619 0.00 0.00 0.00 2.78
262 263 1.553706 TAGTGGGAGGAGACGTTTCC 58.446 55.000 17.16 17.16 37.52 3.13
263 264 1.080025 GTGGGAGGAGACGTTTCCG 60.080 63.158 18.59 0.00 42.29 4.30
283 284 2.353607 GACGACGAGGCGCCTATG 60.354 66.667 32.97 27.02 33.86 2.23
284 285 2.827190 ACGACGAGGCGCCTATGA 60.827 61.111 32.97 0.00 33.86 2.15
285 286 2.131294 GACGACGAGGCGCCTATGAT 62.131 60.000 32.97 15.46 33.86 2.45
286 287 1.730902 CGACGAGGCGCCTATGATG 60.731 63.158 32.97 18.94 0.00 3.07
287 288 1.660355 GACGAGGCGCCTATGATGA 59.340 57.895 32.97 0.00 0.00 2.92
288 289 0.664767 GACGAGGCGCCTATGATGAC 60.665 60.000 32.97 14.51 0.00 3.06
289 290 1.109920 ACGAGGCGCCTATGATGACT 61.110 55.000 32.97 3.02 0.00 3.41
290 291 0.032678 CGAGGCGCCTATGATGACTT 59.967 55.000 32.97 2.04 0.00 3.01
291 292 1.789506 GAGGCGCCTATGATGACTTC 58.210 55.000 32.97 9.38 0.00 3.01
292 293 1.069204 GAGGCGCCTATGATGACTTCA 59.931 52.381 32.97 0.00 39.12 3.02
293 294 1.696336 AGGCGCCTATGATGACTTCAT 59.304 47.619 31.86 0.00 46.86 2.57
294 295 2.899900 AGGCGCCTATGATGACTTCATA 59.100 45.455 31.86 9.88 43.43 2.15
295 296 3.324846 AGGCGCCTATGATGACTTCATAA 59.675 43.478 31.86 0.00 44.72 1.90
296 297 4.065088 GGCGCCTATGATGACTTCATAAA 58.935 43.478 22.15 0.00 44.72 1.40
297 298 4.697352 GGCGCCTATGATGACTTCATAAAT 59.303 41.667 22.15 0.00 44.72 1.40
298 299 5.163814 GGCGCCTATGATGACTTCATAAATC 60.164 44.000 22.15 4.35 44.72 2.17
299 300 5.641209 GCGCCTATGATGACTTCATAAATCT 59.359 40.000 11.10 0.00 44.72 2.40
300 301 6.183360 GCGCCTATGATGACTTCATAAATCTC 60.183 42.308 11.10 1.28 44.72 2.75
301 302 6.870439 CGCCTATGATGACTTCATAAATCTCA 59.130 38.462 11.10 0.00 44.72 3.27
302 303 7.386025 CGCCTATGATGACTTCATAAATCTCAA 59.614 37.037 11.10 0.00 44.72 3.02
303 304 8.719648 GCCTATGATGACTTCATAAATCTCAAG 58.280 37.037 11.10 1.27 44.72 3.02
304 305 9.993454 CCTATGATGACTTCATAAATCTCAAGA 57.007 33.333 11.10 0.00 44.72 3.02
315 316 9.875691 TTCATAAATCTCAAGATGATATACCGG 57.124 33.333 0.00 0.00 34.49 5.28
316 317 7.981789 TCATAAATCTCAAGATGATATACCGGC 59.018 37.037 0.00 0.00 34.49 6.13
317 318 6.365970 AAATCTCAAGATGATATACCGGCT 57.634 37.500 0.00 0.00 34.49 5.52
318 319 5.590530 ATCTCAAGATGATATACCGGCTC 57.409 43.478 0.00 0.00 32.68 4.70
319 320 4.407365 TCTCAAGATGATATACCGGCTCA 58.593 43.478 0.00 0.00 0.00 4.26
320 321 4.460731 TCTCAAGATGATATACCGGCTCAG 59.539 45.833 0.00 0.00 0.00 3.35
321 322 4.152647 TCAAGATGATATACCGGCTCAGT 58.847 43.478 0.00 0.00 0.00 3.41
322 323 4.218635 TCAAGATGATATACCGGCTCAGTC 59.781 45.833 0.00 0.00 0.00 3.51
323 324 4.040936 AGATGATATACCGGCTCAGTCT 57.959 45.455 0.00 2.84 0.00 3.24
324 325 4.411927 AGATGATATACCGGCTCAGTCTT 58.588 43.478 0.00 0.00 0.00 3.01
325 326 4.835615 AGATGATATACCGGCTCAGTCTTT 59.164 41.667 0.00 0.00 0.00 2.52
326 327 4.585955 TGATATACCGGCTCAGTCTTTC 57.414 45.455 0.00 0.00 0.00 2.62
327 328 3.004419 TGATATACCGGCTCAGTCTTTCG 59.996 47.826 0.00 0.00 0.00 3.46
328 329 0.460311 ATACCGGCTCAGTCTTTCGG 59.540 55.000 0.00 0.00 45.42 4.30
329 330 0.609957 TACCGGCTCAGTCTTTCGGA 60.610 55.000 0.00 0.00 42.94 4.55
330 331 1.153745 CCGGCTCAGTCTTTCGGAG 60.154 63.158 0.00 0.00 42.94 4.63
331 332 1.153745 CGGCTCAGTCTTTCGGAGG 60.154 63.158 0.00 0.00 38.48 4.30
332 333 1.878656 CGGCTCAGTCTTTCGGAGGT 61.879 60.000 0.00 0.00 38.48 3.85
333 334 0.390472 GGCTCAGTCTTTCGGAGGTG 60.390 60.000 0.00 0.00 38.48 4.00
334 335 1.016653 GCTCAGTCTTTCGGAGGTGC 61.017 60.000 0.00 0.00 38.48 5.01
335 336 0.605589 CTCAGTCTTTCGGAGGTGCT 59.394 55.000 0.00 0.00 35.32 4.40
336 337 0.603569 TCAGTCTTTCGGAGGTGCTC 59.396 55.000 0.00 0.00 0.00 4.26
337 338 0.318441 CAGTCTTTCGGAGGTGCTCA 59.682 55.000 0.00 0.00 31.08 4.26
338 339 1.066573 CAGTCTTTCGGAGGTGCTCAT 60.067 52.381 0.00 0.00 31.08 2.90
339 340 2.166459 CAGTCTTTCGGAGGTGCTCATA 59.834 50.000 0.00 0.00 31.08 2.15
340 341 2.832129 AGTCTTTCGGAGGTGCTCATAA 59.168 45.455 0.00 0.00 31.08 1.90
341 342 3.118956 AGTCTTTCGGAGGTGCTCATAAG 60.119 47.826 0.00 0.00 31.08 1.73
342 343 2.168521 TCTTTCGGAGGTGCTCATAAGG 59.831 50.000 0.00 0.00 31.08 2.69
343 344 0.830648 TTCGGAGGTGCTCATAAGGG 59.169 55.000 0.00 0.00 31.08 3.95
344 345 0.325296 TCGGAGGTGCTCATAAGGGT 60.325 55.000 0.00 0.00 31.08 4.34
345 346 1.063492 TCGGAGGTGCTCATAAGGGTA 60.063 52.381 0.00 0.00 31.08 3.69
346 347 1.341531 CGGAGGTGCTCATAAGGGTAG 59.658 57.143 0.00 0.00 31.08 3.18
347 348 1.694696 GGAGGTGCTCATAAGGGTAGG 59.305 57.143 0.00 0.00 31.08 3.18
348 349 2.679082 GAGGTGCTCATAAGGGTAGGA 58.321 52.381 0.00 0.00 0.00 2.94
349 350 3.243724 GAGGTGCTCATAAGGGTAGGAT 58.756 50.000 0.00 0.00 0.00 3.24
350 351 2.975489 AGGTGCTCATAAGGGTAGGATG 59.025 50.000 0.00 0.00 0.00 3.51
351 352 2.706190 GGTGCTCATAAGGGTAGGATGT 59.294 50.000 0.00 0.00 0.00 3.06
352 353 3.901844 GGTGCTCATAAGGGTAGGATGTA 59.098 47.826 0.00 0.00 0.00 2.29
353 354 4.262506 GGTGCTCATAAGGGTAGGATGTAC 60.263 50.000 0.00 0.00 0.00 2.90
354 355 3.572682 TGCTCATAAGGGTAGGATGTACG 59.427 47.826 0.00 0.00 0.00 3.67
355 356 3.573110 GCTCATAAGGGTAGGATGTACGT 59.427 47.826 0.00 0.00 0.00 3.57
356 357 4.558898 GCTCATAAGGGTAGGATGTACGTG 60.559 50.000 0.00 0.00 0.00 4.49
357 358 4.539726 TCATAAGGGTAGGATGTACGTGT 58.460 43.478 0.00 0.00 0.00 4.49
358 359 4.340097 TCATAAGGGTAGGATGTACGTGTG 59.660 45.833 0.00 0.00 0.00 3.82
359 360 2.226962 AGGGTAGGATGTACGTGTGT 57.773 50.000 0.00 0.00 0.00 3.72
360 361 1.822990 AGGGTAGGATGTACGTGTGTG 59.177 52.381 0.00 0.00 0.00 3.82
361 362 1.636988 GGTAGGATGTACGTGTGTGC 58.363 55.000 0.00 0.00 0.00 4.57
362 363 1.265568 GTAGGATGTACGTGTGTGCG 58.734 55.000 0.00 0.00 32.77 5.34
364 365 0.032952 AGGATGTACGTGTGTGCGTT 59.967 50.000 0.00 0.00 43.04 4.84
365 366 0.863144 GGATGTACGTGTGTGCGTTT 59.137 50.000 0.00 0.00 43.04 3.60
366 367 2.060284 GGATGTACGTGTGTGCGTTTA 58.940 47.619 0.00 0.00 43.04 2.01
367 368 2.669434 GGATGTACGTGTGTGCGTTTAT 59.331 45.455 0.00 0.00 43.04 1.40
368 369 3.482923 GGATGTACGTGTGTGCGTTTATG 60.483 47.826 0.00 0.00 43.04 1.90
369 370 1.793532 TGTACGTGTGTGCGTTTATGG 59.206 47.619 0.00 0.00 43.04 2.74
370 371 1.127213 GTACGTGTGTGCGTTTATGGG 59.873 52.381 0.00 0.00 43.04 4.00
371 372 0.249953 ACGTGTGTGCGTTTATGGGA 60.250 50.000 0.00 0.00 43.04 4.37
372 373 1.083489 CGTGTGTGCGTTTATGGGAT 58.917 50.000 0.00 0.00 0.00 3.85
373 374 1.202020 CGTGTGTGCGTTTATGGGATG 60.202 52.381 0.00 0.00 0.00 3.51
374 375 2.080693 GTGTGTGCGTTTATGGGATGA 58.919 47.619 0.00 0.00 0.00 2.92
375 376 2.095853 GTGTGTGCGTTTATGGGATGAG 59.904 50.000 0.00 0.00 0.00 2.90
376 377 2.290008 TGTGTGCGTTTATGGGATGAGT 60.290 45.455 0.00 0.00 0.00 3.41
377 378 2.095853 GTGTGCGTTTATGGGATGAGTG 59.904 50.000 0.00 0.00 0.00 3.51
378 379 2.290008 TGTGCGTTTATGGGATGAGTGT 60.290 45.455 0.00 0.00 0.00 3.55
379 380 3.055747 TGTGCGTTTATGGGATGAGTGTA 60.056 43.478 0.00 0.00 0.00 2.90
380 381 4.127171 GTGCGTTTATGGGATGAGTGTAT 58.873 43.478 0.00 0.00 0.00 2.29
381 382 4.024893 GTGCGTTTATGGGATGAGTGTATG 60.025 45.833 0.00 0.00 0.00 2.39
382 383 3.058914 GCGTTTATGGGATGAGTGTATGC 60.059 47.826 0.00 0.00 0.00 3.14
383 384 3.184379 CGTTTATGGGATGAGTGTATGCG 59.816 47.826 0.00 0.00 0.00 4.73
384 385 2.455674 TATGGGATGAGTGTATGCGC 57.544 50.000 0.00 0.00 0.00 6.09
385 386 0.601046 ATGGGATGAGTGTATGCGCG 60.601 55.000 0.00 0.00 0.00 6.86
386 387 1.227263 GGGATGAGTGTATGCGCGT 60.227 57.895 8.43 7.55 0.00 6.01
387 388 1.490693 GGGATGAGTGTATGCGCGTG 61.491 60.000 13.61 0.00 0.00 5.34
388 389 0.806102 GGATGAGTGTATGCGCGTGT 60.806 55.000 13.61 0.00 0.00 4.49
389 390 1.535226 GGATGAGTGTATGCGCGTGTA 60.535 52.381 13.61 0.00 0.00 2.90
390 391 2.394708 GATGAGTGTATGCGCGTGTAT 58.605 47.619 13.61 4.63 0.00 2.29
391 392 3.561503 GATGAGTGTATGCGCGTGTATA 58.438 45.455 13.61 2.40 0.00 1.47
392 393 3.636282 TGAGTGTATGCGCGTGTATAT 57.364 42.857 13.61 0.00 0.00 0.86
393 394 3.305110 TGAGTGTATGCGCGTGTATATG 58.695 45.455 13.61 0.00 0.00 1.78
394 395 3.003897 TGAGTGTATGCGCGTGTATATGA 59.996 43.478 13.61 0.00 0.00 2.15
395 396 3.565516 AGTGTATGCGCGTGTATATGAG 58.434 45.455 13.61 0.00 0.00 2.90
396 397 2.090658 GTGTATGCGCGTGTATATGAGC 59.909 50.000 13.61 0.41 38.85 4.26
401 402 2.264207 CGCGTGTATATGAGCGTTTG 57.736 50.000 0.00 0.00 46.48 2.93
402 403 1.586578 CGCGTGTATATGAGCGTTTGT 59.413 47.619 0.00 0.00 46.48 2.83
403 404 2.594269 CGCGTGTATATGAGCGTTTGTG 60.594 50.000 0.00 0.00 46.48 3.33
404 405 2.347452 GCGTGTATATGAGCGTTTGTGT 59.653 45.455 0.00 0.00 0.00 3.72
405 406 3.541516 GCGTGTATATGAGCGTTTGTGTC 60.542 47.826 0.00 0.00 0.00 3.67
406 407 3.857665 CGTGTATATGAGCGTTTGTGTCT 59.142 43.478 0.00 0.00 0.00 3.41
407 408 4.259411 CGTGTATATGAGCGTTTGTGTCTG 60.259 45.833 0.00 0.00 0.00 3.51
408 409 4.625742 GTGTATATGAGCGTTTGTGTCTGT 59.374 41.667 0.00 0.00 0.00 3.41
409 410 5.803461 GTGTATATGAGCGTTTGTGTCTGTA 59.197 40.000 0.00 0.00 0.00 2.74
410 411 5.803461 TGTATATGAGCGTTTGTGTCTGTAC 59.197 40.000 0.00 0.00 0.00 2.90
411 412 2.882927 TGAGCGTTTGTGTCTGTACT 57.117 45.000 0.00 0.00 0.00 2.73
412 413 2.469826 TGAGCGTTTGTGTCTGTACTG 58.530 47.619 0.00 0.00 0.00 2.74
413 414 2.100087 TGAGCGTTTGTGTCTGTACTGA 59.900 45.455 0.00 0.00 0.00 3.41
414 415 3.243737 TGAGCGTTTGTGTCTGTACTGAT 60.244 43.478 5.69 0.00 0.00 2.90
415 416 3.059884 AGCGTTTGTGTCTGTACTGATG 58.940 45.455 5.69 0.00 0.00 3.07
416 417 2.800544 GCGTTTGTGTCTGTACTGATGT 59.199 45.455 5.69 0.00 0.00 3.06
417 418 3.247648 GCGTTTGTGTCTGTACTGATGTT 59.752 43.478 5.69 0.00 0.00 2.71
418 419 4.608445 GCGTTTGTGTCTGTACTGATGTTC 60.608 45.833 5.69 0.00 0.00 3.18
419 420 4.506288 CGTTTGTGTCTGTACTGATGTTCA 59.494 41.667 5.69 0.00 0.00 3.18
420 421 5.006261 CGTTTGTGTCTGTACTGATGTTCAA 59.994 40.000 5.69 6.72 0.00 2.69
421 422 6.456315 CGTTTGTGTCTGTACTGATGTTCAAA 60.456 38.462 5.69 11.23 0.00 2.69
422 423 6.993786 TTGTGTCTGTACTGATGTTCAAAA 57.006 33.333 5.69 0.00 0.00 2.44
423 424 6.993786 TGTGTCTGTACTGATGTTCAAAAA 57.006 33.333 5.69 0.00 0.00 1.94
453 454 2.763448 ACAGCCTATCTCCTCTGTTCAC 59.237 50.000 0.00 0.00 36.48 3.18
463 464 3.165875 TCCTCTGTTCACCCAACTAGAG 58.834 50.000 0.00 0.00 38.59 2.43
488 489 1.417517 TGGATTGTCTCGCTATGCCAT 59.582 47.619 0.00 0.00 0.00 4.40
535 536 4.365514 TGGTCAAATTAGGTGAGCTTGA 57.634 40.909 8.75 0.00 42.63 3.02
562 563 2.297033 GTGGTGCCAAGATCAAACACAT 59.703 45.455 0.00 0.00 32.89 3.21
563 564 3.505680 GTGGTGCCAAGATCAAACACATA 59.494 43.478 0.00 0.00 32.89 2.29
603 604 4.890088 TGTAATCTGCGTTCCTTACAGTT 58.110 39.130 0.00 0.00 32.10 3.16
723 739 9.211485 CAACTCCATTGCTCATTTCTTAAAATT 57.789 29.630 0.00 0.00 32.69 1.82
799 1251 1.599422 GCAGCAACAACGAACATGCG 61.599 55.000 0.00 0.00 43.39 4.73
809 1292 1.003972 ACGAACATGCGCCAAATATCG 60.004 47.619 4.18 10.30 35.36 2.92
828 1333 9.862371 AAATATCGTAACATGCACCAAATAAAA 57.138 25.926 0.00 0.00 0.00 1.52
830 1335 5.704888 TCGTAACATGCACCAAATAAAAGG 58.295 37.500 0.00 0.00 0.00 3.11
831 1336 4.862018 CGTAACATGCACCAAATAAAAGGG 59.138 41.667 0.00 0.00 0.00 3.95
1022 1546 2.483889 GGACCAGAGAAAGGAATAGGCG 60.484 54.545 0.00 0.00 0.00 5.52
1410 1934 2.738521 GCGCTTGTTCTCTCCGCA 60.739 61.111 0.00 0.00 43.67 5.69
1489 2013 1.145119 GTTCACCCTTCCCTTTCCAGT 59.855 52.381 0.00 0.00 0.00 4.00
1494 2018 1.705186 CCCTTCCCTTTCCAGTCTTCA 59.295 52.381 0.00 0.00 0.00 3.02
1596 2120 2.481795 CCATGTTCATGGGAAATTCGCC 60.482 50.000 20.44 0.94 38.04 5.54
1748 2272 4.271291 GCTATCGTCCTCTTTGTTTGATCC 59.729 45.833 0.00 0.00 0.00 3.36
2031 2555 2.161609 GTCCCAAATGGTTCTAGTTGCG 59.838 50.000 0.00 0.00 34.77 4.85
2055 2579 2.739379 GACTTCTAAACCAGCAGCTGAC 59.261 50.000 24.90 9.11 32.44 3.51
2141 2665 2.746362 GCTCTGTTCCAGATGAAAGTGG 59.254 50.000 0.00 0.00 39.92 4.00
2177 2701 7.618117 TGATATACTAAGAACACCAAGACTGGA 59.382 37.037 0.00 0.00 46.92 3.86
2292 2816 4.537135 ATGTTTACATGTGAGTCGGAGT 57.463 40.909 9.11 0.00 34.83 3.85
2381 2905 4.974645 AGTCATACTTTGTGGTCAGGAA 57.025 40.909 0.00 0.00 0.00 3.36
2535 3059 4.155709 TGGTTTTTGGAGTTCATATGCCA 58.844 39.130 0.00 0.00 0.00 4.92
2536 3060 4.776837 TGGTTTTTGGAGTTCATATGCCAT 59.223 37.500 0.00 0.00 0.00 4.40
2670 3194 5.706916 TGCTATCGATTATCGGGTAAAGTC 58.293 41.667 14.86 3.57 40.88 3.01
2763 3287 5.696724 ACTTGGCGATGCTACTAATAATGAC 59.303 40.000 0.00 0.00 0.00 3.06
2781 3305 6.619801 AATGACGACCATTATAAGAAAGCC 57.380 37.500 6.12 0.00 43.30 4.35
3086 3610 0.610232 GCAGTCCAGGCATTCAAGGT 60.610 55.000 0.00 0.00 0.00 3.50
3195 3719 7.230510 ACACTTGAAGCTGTCAAAATGGTATTA 59.769 33.333 17.27 0.00 45.67 0.98
3205 3729 8.642935 TGTCAAAATGGTATTAAATCTGTCCA 57.357 30.769 0.00 0.00 0.00 4.02
3206 3730 9.083422 TGTCAAAATGGTATTAAATCTGTCCAA 57.917 29.630 0.00 0.00 0.00 3.53
3215 3739 6.899393 ATTAAATCTGTCCAAGAACAAGCA 57.101 33.333 0.00 0.00 38.79 3.91
3237 3761 7.844009 AGCACTTCAATGTTGATTTATTGGAT 58.156 30.769 0.00 0.00 37.00 3.41
3264 3788 0.976641 TGGCCTCTGTCGAAGAACAT 59.023 50.000 3.32 0.00 39.69 2.71
3304 3834 5.741388 AGAAGCTAAATCCATAAGCAACG 57.259 39.130 0.00 0.00 38.75 4.10
3348 3878 5.191722 AGAGACCAGGCTACCAAATCAATTA 59.808 40.000 0.00 0.00 0.00 1.40
3409 3939 1.225704 GGGGCTAGCAATGCAGAGT 59.774 57.895 18.24 0.00 0.00 3.24
3411 3941 1.467920 GGGCTAGCAATGCAGAGTTT 58.532 50.000 18.24 0.00 0.00 2.66
3534 4064 4.260170 GGCATGATCAGAAGAAGTTCACT 58.740 43.478 5.50 1.29 34.82 3.41
3535 4065 4.332268 GGCATGATCAGAAGAAGTTCACTC 59.668 45.833 5.50 1.33 34.82 3.51
3579 4109 6.279227 CAACTTTGCAAGGTCTATATCGAG 57.721 41.667 15.21 0.00 0.00 4.04
3769 4299 4.728772 TCTTGGTTGTGAATCAAGGTCAT 58.271 39.130 8.99 0.00 38.59 3.06
3789 4319 7.716998 AGGTCATCTTGTCATATGGTTTATCAC 59.283 37.037 2.13 0.00 0.00 3.06
3790 4320 7.498900 GGTCATCTTGTCATATGGTTTATCACA 59.501 37.037 2.13 0.00 0.00 3.58
3791 4321 8.554528 GTCATCTTGTCATATGGTTTATCACAG 58.445 37.037 2.13 0.00 0.00 3.66
3792 4322 8.485392 TCATCTTGTCATATGGTTTATCACAGA 58.515 33.333 2.13 0.00 0.00 3.41
3793 4323 8.554528 CATCTTGTCATATGGTTTATCACAGAC 58.445 37.037 2.13 0.00 0.00 3.51
3794 4324 7.047891 TCTTGTCATATGGTTTATCACAGACC 58.952 38.462 2.13 0.00 0.00 3.85
3795 4325 5.680619 TGTCATATGGTTTATCACAGACCC 58.319 41.667 2.13 0.00 32.39 4.46
3796 4326 5.428457 TGTCATATGGTTTATCACAGACCCT 59.572 40.000 2.13 0.00 32.39 4.34
3797 4327 6.069673 TGTCATATGGTTTATCACAGACCCTT 60.070 38.462 2.13 0.00 32.39 3.95
3798 4328 6.828785 GTCATATGGTTTATCACAGACCCTTT 59.171 38.462 2.13 0.00 32.39 3.11
3799 4329 7.990886 GTCATATGGTTTATCACAGACCCTTTA 59.009 37.037 2.13 0.00 32.39 1.85
3800 4330 7.990886 TCATATGGTTTATCACAGACCCTTTAC 59.009 37.037 2.13 0.00 32.39 2.01
3801 4331 5.570205 TGGTTTATCACAGACCCTTTACA 57.430 39.130 0.00 0.00 32.39 2.41
3802 4332 5.556915 TGGTTTATCACAGACCCTTTACAG 58.443 41.667 0.00 0.00 32.39 2.74
3803 4333 5.308497 TGGTTTATCACAGACCCTTTACAGA 59.692 40.000 0.00 0.00 32.39 3.41
3804 4334 6.183361 TGGTTTATCACAGACCCTTTACAGAA 60.183 38.462 0.00 0.00 32.39 3.02
3805 4335 6.713450 GGTTTATCACAGACCCTTTACAGAAA 59.287 38.462 0.00 0.00 0.00 2.52
3806 4336 7.229907 GGTTTATCACAGACCCTTTACAGAAAA 59.770 37.037 0.00 0.00 0.00 2.29
3807 4337 8.626526 GTTTATCACAGACCCTTTACAGAAAAA 58.373 33.333 0.00 0.00 0.00 1.94
3808 4338 6.884280 ATCACAGACCCTTTACAGAAAAAG 57.116 37.500 0.00 0.00 36.43 2.27
3809 4339 5.751586 TCACAGACCCTTTACAGAAAAAGT 58.248 37.500 0.00 0.00 35.16 2.66
3810 4340 6.184789 TCACAGACCCTTTACAGAAAAAGTT 58.815 36.000 0.00 0.00 35.16 2.66
3811 4341 6.661805 TCACAGACCCTTTACAGAAAAAGTTT 59.338 34.615 0.00 0.00 35.16 2.66
3812 4342 7.177744 TCACAGACCCTTTACAGAAAAAGTTTT 59.822 33.333 0.00 0.00 35.16 2.43
3813 4343 7.817478 CACAGACCCTTTACAGAAAAAGTTTTT 59.183 33.333 13.35 13.35 35.16 1.94
3868 4398 0.025513 GCATCGTCAAGTCGCATCAC 59.974 55.000 0.00 0.00 0.00 3.06
3952 4485 3.559238 ATTCATGTTGGTCGTTTGCTC 57.441 42.857 0.00 0.00 0.00 4.26
4303 5407 7.874528 TGCATGGACAATCTACTCATACTTATG 59.125 37.037 0.00 0.00 35.04 1.90
4304 5408 7.148507 GCATGGACAATCTACTCATACTTATGC 60.149 40.741 0.00 0.00 33.76 3.14
4305 5409 7.360113 TGGACAATCTACTCATACTTATGCA 57.640 36.000 0.00 0.00 33.76 3.96
4306 5410 7.966812 TGGACAATCTACTCATACTTATGCAT 58.033 34.615 3.79 3.79 33.76 3.96
4307 5411 7.874528 TGGACAATCTACTCATACTTATGCATG 59.125 37.037 10.16 0.00 33.76 4.06
4308 5412 7.332926 GGACAATCTACTCATACTTATGCATGG 59.667 40.741 10.16 4.66 33.76 3.66
4309 5413 7.966812 ACAATCTACTCATACTTATGCATGGA 58.033 34.615 10.16 0.00 33.76 3.41
4310 5414 8.600668 ACAATCTACTCATACTTATGCATGGAT 58.399 33.333 10.16 4.68 33.76 3.41
4420 5524 5.105146 ACTGAAATAAGTTTGTGGGTTGCAA 60.105 36.000 0.00 0.00 0.00 4.08
4591 5722 7.995488 ACATGCCTTTTTAGACTATTCAGCTAT 59.005 33.333 0.00 0.00 0.00 2.97
4592 5723 8.502387 CATGCCTTTTTAGACTATTCAGCTATC 58.498 37.037 0.00 0.00 0.00 2.08
4652 5816 9.352784 TGTTAACTGACAAACATTCTCTTTTTG 57.647 29.630 7.22 0.00 36.49 2.44
4701 5865 2.027192 GGTGAGTTTAGTGCCCATCTGA 60.027 50.000 0.00 0.00 0.00 3.27
4800 5968 7.446769 TCAGTTTACCTTTTATGCTCACTGTA 58.553 34.615 0.00 0.00 32.63 2.74
4801 5969 7.934665 TCAGTTTACCTTTTATGCTCACTGTAA 59.065 33.333 0.00 0.00 32.63 2.41
4847 6015 6.828785 GGGATACATGTGAAACTGAACCTTAT 59.171 38.462 9.11 0.00 36.07 1.73
4964 6133 9.871238 ATACTGGTAAATAGGAATTATGCTACG 57.129 33.333 0.00 0.00 31.77 3.51
5059 6229 7.423844 TGCAATGTAGATATATACTCCCAGG 57.576 40.000 8.85 0.00 0.00 4.45
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.280186 GGCCGGAGCATTAGACCG 60.280 66.667 5.05 0.00 45.24 4.79
49 50 1.270732 TGGGTTGTTGCATGGATTTGC 60.271 47.619 0.00 0.00 43.07 3.68
69 70 3.832527 ACAGGCTGTTTTACCACTGAAT 58.167 40.909 15.88 0.00 0.00 2.57
116 117 1.228245 ATGTTGGTTCGCAGGCTGT 60.228 52.632 17.16 0.00 0.00 4.40
117 118 1.210931 CATGTTGGTTCGCAGGCTG 59.789 57.895 10.94 10.94 0.00 4.85
118 119 1.228245 ACATGTTGGTTCGCAGGCT 60.228 52.632 0.00 0.00 0.00 4.58
119 120 1.081242 CACATGTTGGTTCGCAGGC 60.081 57.895 0.00 0.00 0.00 4.85
120 121 1.081242 GCACATGTTGGTTCGCAGG 60.081 57.895 0.00 0.00 0.00 4.85
121 122 0.311790 AAGCACATGTTGGTTCGCAG 59.688 50.000 0.00 0.00 42.45 5.18
122 123 0.030504 CAAGCACATGTTGGTTCGCA 59.969 50.000 0.00 0.00 44.32 5.10
123 124 0.310543 TCAAGCACATGTTGGTTCGC 59.689 50.000 0.00 0.00 44.32 4.70
124 125 2.772568 TTCAAGCACATGTTGGTTCG 57.227 45.000 0.00 0.64 44.32 3.95
125 126 3.243839 ACCATTCAAGCACATGTTGGTTC 60.244 43.478 9.79 0.00 44.32 3.62
127 128 2.318908 ACCATTCAAGCACATGTTGGT 58.681 42.857 9.79 9.79 37.63 3.67
128 129 3.389925 AACCATTCAAGCACATGTTGG 57.610 42.857 8.60 8.60 33.66 3.77
129 130 5.375417 TCTAACCATTCAAGCACATGTTG 57.625 39.130 0.00 0.00 0.00 3.33
130 131 4.460382 CCTCTAACCATTCAAGCACATGTT 59.540 41.667 0.00 0.00 0.00 2.71
131 132 4.012374 CCTCTAACCATTCAAGCACATGT 58.988 43.478 0.00 0.00 0.00 3.21
132 133 3.379372 CCCTCTAACCATTCAAGCACATG 59.621 47.826 0.00 0.00 0.00 3.21
133 134 3.266772 TCCCTCTAACCATTCAAGCACAT 59.733 43.478 0.00 0.00 0.00 3.21
134 135 2.642311 TCCCTCTAACCATTCAAGCACA 59.358 45.455 0.00 0.00 0.00 4.57
135 136 3.010420 GTCCCTCTAACCATTCAAGCAC 58.990 50.000 0.00 0.00 0.00 4.40
136 137 2.354704 CGTCCCTCTAACCATTCAAGCA 60.355 50.000 0.00 0.00 0.00 3.91
137 138 2.093658 TCGTCCCTCTAACCATTCAAGC 60.094 50.000 0.00 0.00 0.00 4.01
138 139 3.887621 TCGTCCCTCTAACCATTCAAG 57.112 47.619 0.00 0.00 0.00 3.02
139 140 3.118408 CCATCGTCCCTCTAACCATTCAA 60.118 47.826 0.00 0.00 0.00 2.69
140 141 2.434336 CCATCGTCCCTCTAACCATTCA 59.566 50.000 0.00 0.00 0.00 2.57
141 142 2.434702 ACCATCGTCCCTCTAACCATTC 59.565 50.000 0.00 0.00 0.00 2.67
142 143 2.478292 ACCATCGTCCCTCTAACCATT 58.522 47.619 0.00 0.00 0.00 3.16
143 144 2.176247 ACCATCGTCCCTCTAACCAT 57.824 50.000 0.00 0.00 0.00 3.55
144 145 2.832643 TACCATCGTCCCTCTAACCA 57.167 50.000 0.00 0.00 0.00 3.67
145 146 2.561858 GGATACCATCGTCCCTCTAACC 59.438 54.545 0.00 0.00 0.00 2.85
146 147 3.938289 GGATACCATCGTCCCTCTAAC 57.062 52.381 0.00 0.00 0.00 2.34
161 162 1.613061 CCTGGTGGGTTGGGGATAC 59.387 63.158 0.00 0.00 0.00 2.24
162 163 4.179896 CCTGGTGGGTTGGGGATA 57.820 61.111 0.00 0.00 0.00 2.59
172 173 0.965363 CGGGATTTGAACCCTGGTGG 60.965 60.000 0.00 0.00 44.72 4.61
173 174 0.965363 CCGGGATTTGAACCCTGGTG 60.965 60.000 0.00 0.00 44.72 4.17
174 175 1.382629 CCGGGATTTGAACCCTGGT 59.617 57.895 0.00 0.00 44.72 4.00
175 176 0.965363 CACCGGGATTTGAACCCTGG 60.965 60.000 6.32 0.01 44.72 4.45
176 177 0.251165 ACACCGGGATTTGAACCCTG 60.251 55.000 6.32 0.00 44.72 4.45
177 178 0.481128 AACACCGGGATTTGAACCCT 59.519 50.000 6.32 0.00 44.72 4.34
178 179 0.885879 GAACACCGGGATTTGAACCC 59.114 55.000 6.32 0.00 43.57 4.11
179 180 1.268625 GTGAACACCGGGATTTGAACC 59.731 52.381 6.32 0.00 0.00 3.62
180 181 1.950909 TGTGAACACCGGGATTTGAAC 59.049 47.619 6.32 0.90 0.00 3.18
181 182 2.350057 TGTGAACACCGGGATTTGAA 57.650 45.000 6.32 0.00 0.00 2.69
182 183 2.577606 ATGTGAACACCGGGATTTGA 57.422 45.000 6.32 0.00 0.00 2.69
183 184 3.658757 AAATGTGAACACCGGGATTTG 57.341 42.857 6.32 0.00 0.00 2.32
184 185 5.105513 GGAATAAATGTGAACACCGGGATTT 60.106 40.000 6.32 0.00 0.00 2.17
185 186 4.401202 GGAATAAATGTGAACACCGGGATT 59.599 41.667 6.32 0.00 0.00 3.01
186 187 3.951680 GGAATAAATGTGAACACCGGGAT 59.048 43.478 6.32 0.00 0.00 3.85
187 188 3.009695 AGGAATAAATGTGAACACCGGGA 59.990 43.478 6.32 0.00 0.00 5.14
188 189 3.128589 CAGGAATAAATGTGAACACCGGG 59.871 47.826 6.32 0.00 0.00 5.73
189 190 3.128589 CCAGGAATAAATGTGAACACCGG 59.871 47.826 0.00 0.00 0.00 5.28
190 191 4.006989 TCCAGGAATAAATGTGAACACCG 58.993 43.478 2.46 0.00 0.00 4.94
191 192 6.530019 AATCCAGGAATAAATGTGAACACC 57.470 37.500 0.00 0.00 0.00 4.16
207 208 7.333528 TCGAAAATCCTGAAATAAATCCAGG 57.666 36.000 0.00 0.00 46.64 4.45
208 209 8.623903 TCATCGAAAATCCTGAAATAAATCCAG 58.376 33.333 0.00 0.00 0.00 3.86
209 210 8.518430 TCATCGAAAATCCTGAAATAAATCCA 57.482 30.769 0.00 0.00 0.00 3.41
210 211 9.403110 CATCATCGAAAATCCTGAAATAAATCC 57.597 33.333 0.00 0.00 0.00 3.01
211 212 8.909671 GCATCATCGAAAATCCTGAAATAAATC 58.090 33.333 0.00 0.00 0.00 2.17
212 213 7.592533 CGCATCATCGAAAATCCTGAAATAAAT 59.407 33.333 0.00 0.00 0.00 1.40
213 214 6.912051 CGCATCATCGAAAATCCTGAAATAAA 59.088 34.615 0.00 0.00 0.00 1.40
214 215 6.429624 CGCATCATCGAAAATCCTGAAATAA 58.570 36.000 0.00 0.00 0.00 1.40
215 216 5.560760 GCGCATCATCGAAAATCCTGAAATA 60.561 40.000 0.30 0.00 0.00 1.40
216 217 4.790766 GCGCATCATCGAAAATCCTGAAAT 60.791 41.667 0.30 0.00 0.00 2.17
217 218 3.487376 GCGCATCATCGAAAATCCTGAAA 60.487 43.478 0.30 0.00 0.00 2.69
218 219 2.032054 GCGCATCATCGAAAATCCTGAA 59.968 45.455 0.30 0.00 0.00 3.02
219 220 1.599071 GCGCATCATCGAAAATCCTGA 59.401 47.619 0.30 0.00 0.00 3.86
220 221 1.331447 TGCGCATCATCGAAAATCCTG 59.669 47.619 5.66 0.00 0.00 3.86
221 222 1.667236 TGCGCATCATCGAAAATCCT 58.333 45.000 5.66 0.00 0.00 3.24
222 223 2.693797 ATGCGCATCATCGAAAATCC 57.306 45.000 19.28 0.00 0.00 3.01
223 224 5.114572 CACTAAATGCGCATCATCGAAAATC 59.885 40.000 25.53 0.00 33.40 2.17
224 225 4.971830 CACTAAATGCGCATCATCGAAAAT 59.028 37.500 25.53 0.62 33.40 1.82
225 226 4.341935 CACTAAATGCGCATCATCGAAAA 58.658 39.130 25.53 2.32 33.40 2.29
226 227 3.242706 CCACTAAATGCGCATCATCGAAA 60.243 43.478 25.53 3.39 33.40 3.46
227 228 2.287644 CCACTAAATGCGCATCATCGAA 59.712 45.455 25.53 4.82 33.40 3.71
228 229 1.866601 CCACTAAATGCGCATCATCGA 59.133 47.619 25.53 6.42 33.40 3.59
229 230 1.069703 CCCACTAAATGCGCATCATCG 60.070 52.381 25.53 14.02 33.40 3.84
230 231 2.221169 TCCCACTAAATGCGCATCATC 58.779 47.619 25.53 0.00 33.40 2.92
231 232 2.224606 CTCCCACTAAATGCGCATCAT 58.775 47.619 25.53 18.01 36.87 2.45
232 233 1.667236 CTCCCACTAAATGCGCATCA 58.333 50.000 25.53 13.80 0.00 3.07
233 234 0.947244 CCTCCCACTAAATGCGCATC 59.053 55.000 25.53 0.00 0.00 3.91
234 235 0.546122 TCCTCCCACTAAATGCGCAT 59.454 50.000 19.28 19.28 0.00 4.73
235 236 0.107703 CTCCTCCCACTAAATGCGCA 60.108 55.000 14.96 14.96 0.00 6.09
236 237 0.178068 TCTCCTCCCACTAAATGCGC 59.822 55.000 0.00 0.00 0.00 6.09
237 238 1.802880 CGTCTCCTCCCACTAAATGCG 60.803 57.143 0.00 0.00 0.00 4.73
238 239 1.207329 ACGTCTCCTCCCACTAAATGC 59.793 52.381 0.00 0.00 0.00 3.56
239 240 3.611766 AACGTCTCCTCCCACTAAATG 57.388 47.619 0.00 0.00 0.00 2.32
240 241 3.055312 GGAAACGTCTCCTCCCACTAAAT 60.055 47.826 0.00 0.00 32.21 1.40
241 242 2.301009 GGAAACGTCTCCTCCCACTAAA 59.699 50.000 0.00 0.00 32.21 1.85
242 243 1.897802 GGAAACGTCTCCTCCCACTAA 59.102 52.381 0.00 0.00 32.21 2.24
243 244 1.553706 GGAAACGTCTCCTCCCACTA 58.446 55.000 0.00 0.00 32.21 2.74
244 245 2.363297 GGAAACGTCTCCTCCCACT 58.637 57.895 0.00 0.00 32.21 4.00
265 266 3.950254 ATAGGCGCCTCGTCGTCG 61.950 66.667 36.73 0.00 39.34 5.12
266 267 2.131294 ATCATAGGCGCCTCGTCGTC 62.131 60.000 36.73 0.00 36.23 4.20
267 268 2.194212 ATCATAGGCGCCTCGTCGT 61.194 57.895 36.73 14.07 36.23 4.34
268 269 1.730902 CATCATAGGCGCCTCGTCG 60.731 63.158 36.73 19.75 36.23 5.12
269 270 0.664767 GTCATCATAGGCGCCTCGTC 60.665 60.000 36.73 13.65 0.00 4.20
270 271 1.109920 AGTCATCATAGGCGCCTCGT 61.110 55.000 36.73 21.12 0.00 4.18
271 272 0.032678 AAGTCATCATAGGCGCCTCG 59.967 55.000 36.73 25.72 0.00 4.63
272 273 1.069204 TGAAGTCATCATAGGCGCCTC 59.931 52.381 36.73 17.40 31.50 4.70
273 274 1.123077 TGAAGTCATCATAGGCGCCT 58.877 50.000 34.85 34.85 31.50 5.52
274 275 3.686622 TGAAGTCATCATAGGCGCC 57.313 52.632 21.89 21.89 31.50 6.53
289 290 9.875691 CCGGTATATCATCTTGAGATTTATGAA 57.124 33.333 0.00 0.00 30.15 2.57
290 291 7.981789 GCCGGTATATCATCTTGAGATTTATGA 59.018 37.037 1.90 0.00 30.15 2.15
291 292 7.984050 AGCCGGTATATCATCTTGAGATTTATG 59.016 37.037 1.90 0.00 30.15 1.90
292 293 8.083828 AGCCGGTATATCATCTTGAGATTTAT 57.916 34.615 1.90 0.00 30.15 1.40
293 294 7.178451 TGAGCCGGTATATCATCTTGAGATTTA 59.822 37.037 1.90 0.00 30.15 1.40
294 295 6.014242 TGAGCCGGTATATCATCTTGAGATTT 60.014 38.462 1.90 0.00 30.15 2.17
295 296 5.481824 TGAGCCGGTATATCATCTTGAGATT 59.518 40.000 1.90 0.00 30.15 2.40
296 297 5.019470 TGAGCCGGTATATCATCTTGAGAT 58.981 41.667 1.90 0.00 32.49 2.75
297 298 4.407365 TGAGCCGGTATATCATCTTGAGA 58.593 43.478 1.90 0.00 0.00 3.27
298 299 4.219507 ACTGAGCCGGTATATCATCTTGAG 59.780 45.833 1.90 0.00 0.00 3.02
299 300 4.152647 ACTGAGCCGGTATATCATCTTGA 58.847 43.478 1.90 0.00 0.00 3.02
300 301 4.219507 AGACTGAGCCGGTATATCATCTTG 59.780 45.833 1.90 0.00 0.00 3.02
301 302 4.411927 AGACTGAGCCGGTATATCATCTT 58.588 43.478 1.90 0.00 0.00 2.40
302 303 4.040936 AGACTGAGCCGGTATATCATCT 57.959 45.455 1.90 5.54 0.00 2.90
303 304 4.792521 AAGACTGAGCCGGTATATCATC 57.207 45.455 1.90 3.56 0.00 2.92
304 305 4.321304 CGAAAGACTGAGCCGGTATATCAT 60.321 45.833 1.90 0.00 0.00 2.45
305 306 3.004419 CGAAAGACTGAGCCGGTATATCA 59.996 47.826 1.90 1.83 0.00 2.15
306 307 3.566523 CGAAAGACTGAGCCGGTATATC 58.433 50.000 1.90 0.00 0.00 1.63
307 308 2.296471 CCGAAAGACTGAGCCGGTATAT 59.704 50.000 1.90 0.00 35.83 0.86
308 309 1.679680 CCGAAAGACTGAGCCGGTATA 59.320 52.381 1.90 0.00 35.83 1.47
309 310 0.460311 CCGAAAGACTGAGCCGGTAT 59.540 55.000 1.90 0.00 35.83 2.73
310 311 0.609957 TCCGAAAGACTGAGCCGGTA 60.610 55.000 1.90 0.00 40.87 4.02
311 312 1.878656 CTCCGAAAGACTGAGCCGGT 61.879 60.000 1.90 0.00 40.87 5.28
312 313 1.153745 CTCCGAAAGACTGAGCCGG 60.154 63.158 0.00 0.00 41.36 6.13
313 314 1.153745 CCTCCGAAAGACTGAGCCG 60.154 63.158 0.00 0.00 0.00 5.52
314 315 0.390472 CACCTCCGAAAGACTGAGCC 60.390 60.000 0.00 0.00 0.00 4.70
315 316 1.016653 GCACCTCCGAAAGACTGAGC 61.017 60.000 0.00 0.00 0.00 4.26
316 317 0.605589 AGCACCTCCGAAAGACTGAG 59.394 55.000 0.00 0.00 0.00 3.35
317 318 0.603569 GAGCACCTCCGAAAGACTGA 59.396 55.000 0.00 0.00 0.00 3.41
318 319 0.318441 TGAGCACCTCCGAAAGACTG 59.682 55.000 0.00 0.00 0.00 3.51
319 320 1.270907 ATGAGCACCTCCGAAAGACT 58.729 50.000 0.00 0.00 0.00 3.24
320 321 2.961526 TATGAGCACCTCCGAAAGAC 57.038 50.000 0.00 0.00 0.00 3.01
321 322 2.168521 CCTTATGAGCACCTCCGAAAGA 59.831 50.000 0.00 0.00 0.00 2.52
322 323 2.555199 CCTTATGAGCACCTCCGAAAG 58.445 52.381 0.00 0.00 0.00 2.62
323 324 1.209504 CCCTTATGAGCACCTCCGAAA 59.790 52.381 0.00 0.00 0.00 3.46
324 325 0.830648 CCCTTATGAGCACCTCCGAA 59.169 55.000 0.00 0.00 0.00 4.30
325 326 0.325296 ACCCTTATGAGCACCTCCGA 60.325 55.000 0.00 0.00 0.00 4.55
326 327 1.341531 CTACCCTTATGAGCACCTCCG 59.658 57.143 0.00 0.00 0.00 4.63
327 328 1.694696 CCTACCCTTATGAGCACCTCC 59.305 57.143 0.00 0.00 0.00 4.30
328 329 2.679082 TCCTACCCTTATGAGCACCTC 58.321 52.381 0.00 0.00 0.00 3.85
329 330 2.868964 TCCTACCCTTATGAGCACCT 57.131 50.000 0.00 0.00 0.00 4.00
330 331 2.706190 ACATCCTACCCTTATGAGCACC 59.294 50.000 0.00 0.00 0.00 5.01
331 332 4.558898 CGTACATCCTACCCTTATGAGCAC 60.559 50.000 0.00 0.00 0.00 4.40
332 333 3.572682 CGTACATCCTACCCTTATGAGCA 59.427 47.826 0.00 0.00 0.00 4.26
333 334 3.573110 ACGTACATCCTACCCTTATGAGC 59.427 47.826 0.00 0.00 0.00 4.26
334 335 4.583489 ACACGTACATCCTACCCTTATGAG 59.417 45.833 0.00 0.00 0.00 2.90
335 336 4.340097 CACACGTACATCCTACCCTTATGA 59.660 45.833 0.00 0.00 0.00 2.15
336 337 4.098960 ACACACGTACATCCTACCCTTATG 59.901 45.833 0.00 0.00 0.00 1.90
337 338 4.098960 CACACACGTACATCCTACCCTTAT 59.901 45.833 0.00 0.00 0.00 1.73
338 339 3.444742 CACACACGTACATCCTACCCTTA 59.555 47.826 0.00 0.00 0.00 2.69
339 340 2.232941 CACACACGTACATCCTACCCTT 59.767 50.000 0.00 0.00 0.00 3.95
340 341 1.822990 CACACACGTACATCCTACCCT 59.177 52.381 0.00 0.00 0.00 4.34
341 342 1.738030 GCACACACGTACATCCTACCC 60.738 57.143 0.00 0.00 0.00 3.69
342 343 1.636988 GCACACACGTACATCCTACC 58.363 55.000 0.00 0.00 0.00 3.18
343 344 1.265568 CGCACACACGTACATCCTAC 58.734 55.000 0.00 0.00 0.00 3.18
344 345 0.883153 ACGCACACACGTACATCCTA 59.117 50.000 0.00 0.00 46.19 2.94
345 346 1.663739 ACGCACACACGTACATCCT 59.336 52.632 0.00 0.00 46.19 3.24
346 347 4.255126 ACGCACACACGTACATCC 57.745 55.556 0.00 0.00 46.19 3.51
353 354 1.083489 ATCCCATAAACGCACACACG 58.917 50.000 0.00 0.00 39.50 4.49
354 355 2.080693 TCATCCCATAAACGCACACAC 58.919 47.619 0.00 0.00 0.00 3.82
355 356 2.290008 ACTCATCCCATAAACGCACACA 60.290 45.455 0.00 0.00 0.00 3.72
356 357 2.095853 CACTCATCCCATAAACGCACAC 59.904 50.000 0.00 0.00 0.00 3.82
357 358 2.290008 ACACTCATCCCATAAACGCACA 60.290 45.455 0.00 0.00 0.00 4.57
358 359 2.356135 ACACTCATCCCATAAACGCAC 58.644 47.619 0.00 0.00 0.00 5.34
359 360 2.779755 ACACTCATCCCATAAACGCA 57.220 45.000 0.00 0.00 0.00 5.24
360 361 3.058914 GCATACACTCATCCCATAAACGC 60.059 47.826 0.00 0.00 0.00 4.84
361 362 3.184379 CGCATACACTCATCCCATAAACG 59.816 47.826 0.00 0.00 0.00 3.60
362 363 3.058914 GCGCATACACTCATCCCATAAAC 60.059 47.826 0.30 0.00 0.00 2.01
363 364 3.138304 GCGCATACACTCATCCCATAAA 58.862 45.455 0.30 0.00 0.00 1.40
364 365 2.766313 GCGCATACACTCATCCCATAA 58.234 47.619 0.30 0.00 0.00 1.90
365 366 1.336795 CGCGCATACACTCATCCCATA 60.337 52.381 8.75 0.00 0.00 2.74
366 367 0.601046 CGCGCATACACTCATCCCAT 60.601 55.000 8.75 0.00 0.00 4.00
367 368 1.227234 CGCGCATACACTCATCCCA 60.227 57.895 8.75 0.00 0.00 4.37
368 369 1.227263 ACGCGCATACACTCATCCC 60.227 57.895 5.73 0.00 0.00 3.85
369 370 0.806102 ACACGCGCATACACTCATCC 60.806 55.000 5.73 0.00 0.00 3.51
370 371 1.835121 TACACGCGCATACACTCATC 58.165 50.000 5.73 0.00 0.00 2.92
371 372 2.509052 ATACACGCGCATACACTCAT 57.491 45.000 5.73 0.00 0.00 2.90
372 373 3.003897 TCATATACACGCGCATACACTCA 59.996 43.478 5.73 0.00 0.00 3.41
373 374 3.561503 TCATATACACGCGCATACACTC 58.438 45.455 5.73 0.00 0.00 3.51
374 375 3.565516 CTCATATACACGCGCATACACT 58.434 45.455 5.73 0.00 0.00 3.55
375 376 2.090658 GCTCATATACACGCGCATACAC 59.909 50.000 5.73 0.00 0.00 2.90
376 377 2.324860 GCTCATATACACGCGCATACA 58.675 47.619 5.73 0.00 0.00 2.29
377 378 1.317611 CGCTCATATACACGCGCATAC 59.682 52.381 5.73 0.00 39.11 2.39
378 379 1.613270 CGCTCATATACACGCGCATA 58.387 50.000 5.73 1.53 39.11 3.14
379 380 2.434688 CGCTCATATACACGCGCAT 58.565 52.632 5.73 0.00 39.11 4.73
380 381 3.916439 CGCTCATATACACGCGCA 58.084 55.556 5.73 0.00 39.11 6.09
383 384 2.347452 ACACAAACGCTCATATACACGC 59.653 45.455 0.00 0.00 0.00 5.34
384 385 3.857665 AGACACAAACGCTCATATACACG 59.142 43.478 0.00 0.00 0.00 4.49
385 386 4.625742 ACAGACACAAACGCTCATATACAC 59.374 41.667 0.00 0.00 0.00 2.90
386 387 4.816392 ACAGACACAAACGCTCATATACA 58.184 39.130 0.00 0.00 0.00 2.29
387 388 6.020599 CAGTACAGACACAAACGCTCATATAC 60.021 42.308 0.00 0.00 0.00 1.47
388 389 6.033966 CAGTACAGACACAAACGCTCATATA 58.966 40.000 0.00 0.00 0.00 0.86
389 390 4.864806 CAGTACAGACACAAACGCTCATAT 59.135 41.667 0.00 0.00 0.00 1.78
390 391 4.022676 TCAGTACAGACACAAACGCTCATA 60.023 41.667 0.00 0.00 0.00 2.15
391 392 3.059884 CAGTACAGACACAAACGCTCAT 58.940 45.455 0.00 0.00 0.00 2.90
392 393 2.100087 TCAGTACAGACACAAACGCTCA 59.900 45.455 0.00 0.00 0.00 4.26
393 394 2.739292 TCAGTACAGACACAAACGCTC 58.261 47.619 0.00 0.00 0.00 5.03
394 395 2.882927 TCAGTACAGACACAAACGCT 57.117 45.000 0.00 0.00 0.00 5.07
395 396 2.800544 ACATCAGTACAGACACAAACGC 59.199 45.455 0.00 0.00 0.00 4.84
396 397 4.506288 TGAACATCAGTACAGACACAAACG 59.494 41.667 0.00 0.00 0.00 3.60
397 398 5.984233 TGAACATCAGTACAGACACAAAC 57.016 39.130 0.00 0.00 0.00 2.93
398 399 6.993786 TTTGAACATCAGTACAGACACAAA 57.006 33.333 0.00 2.00 0.00 2.83
399 400 6.993786 TTTTGAACATCAGTACAGACACAA 57.006 33.333 0.00 0.00 0.00 3.33
400 401 6.993786 TTTTTGAACATCAGTACAGACACA 57.006 33.333 0.00 0.00 0.00 3.72
426 427 4.534103 ACAGAGGAGATAGGCTGTCTTTTT 59.466 41.667 15.31 4.25 36.98 1.94
427 428 4.100373 ACAGAGGAGATAGGCTGTCTTTT 58.900 43.478 15.31 6.69 36.98 2.27
428 429 3.718723 ACAGAGGAGATAGGCTGTCTTT 58.281 45.455 15.31 7.04 36.98 2.52
429 430 3.396685 ACAGAGGAGATAGGCTGTCTT 57.603 47.619 15.31 0.00 36.98 3.01
430 431 3.295973 GAACAGAGGAGATAGGCTGTCT 58.704 50.000 14.07 14.07 40.43 3.41
431 432 3.027412 TGAACAGAGGAGATAGGCTGTC 58.973 50.000 2.62 2.62 40.43 3.51
439 440 2.625639 AGTTGGGTGAACAGAGGAGAT 58.374 47.619 0.00 0.00 36.98 2.75
442 443 3.165875 CTCTAGTTGGGTGAACAGAGGA 58.834 50.000 0.00 0.00 36.81 3.71
453 454 5.600484 AGACAATCCATCTACTCTAGTTGGG 59.400 44.000 6.55 0.00 43.01 4.12
463 464 3.923461 GCATAGCGAGACAATCCATCTAC 59.077 47.826 0.00 0.00 0.00 2.59
471 472 1.233019 GCATGGCATAGCGAGACAAT 58.767 50.000 0.00 0.00 0.00 2.71
475 476 2.427320 GGGCATGGCATAGCGAGA 59.573 61.111 22.06 0.00 0.00 4.04
535 536 1.355381 TGATCTTGGCACCACAAGGAT 59.645 47.619 6.15 0.00 46.04 3.24
562 563 2.637872 ACAAACTGCTAGGCAAGAGGTA 59.362 45.455 0.00 0.00 38.41 3.08
563 564 1.421646 ACAAACTGCTAGGCAAGAGGT 59.578 47.619 0.00 0.00 38.41 3.85
631 632 9.383519 CCACTCTTACTCAAATTAGCTTGATAA 57.616 33.333 0.00 0.00 34.86 1.75
638 654 6.349300 TGGATCCACTCTTACTCAAATTAGC 58.651 40.000 11.44 0.00 0.00 3.09
723 739 2.500098 CTGTTCTATTCCGGTGGAAGGA 59.500 50.000 0.00 2.79 45.48 3.36
739 755 2.342179 GCTGCCTCTTCTGTACTGTTC 58.658 52.381 0.00 0.00 0.00 3.18
740 756 1.002544 GGCTGCCTCTTCTGTACTGTT 59.997 52.381 12.43 0.00 0.00 3.16
799 1251 3.066064 TGGTGCATGTTACGATATTTGGC 59.934 43.478 0.00 0.00 0.00 4.52
809 1292 6.031751 TCCCTTTTATTTGGTGCATGTTAC 57.968 37.500 0.00 0.00 0.00 2.50
828 1333 2.368875 CAGTGGTTATTCGCCTATCCCT 59.631 50.000 0.00 0.00 0.00 4.20
830 1335 2.767505 CCAGTGGTTATTCGCCTATCC 58.232 52.381 0.00 0.00 0.00 2.59
831 1336 2.143925 GCCAGTGGTTATTCGCCTATC 58.856 52.381 11.74 0.00 0.00 2.08
958 1468 1.226686 CGCTCAGGCTATCACATGGC 61.227 60.000 0.00 0.00 36.09 4.40
959 1469 1.226686 GCGCTCAGGCTATCACATGG 61.227 60.000 0.00 0.00 36.09 3.66
960 1470 0.249784 AGCGCTCAGGCTATCACATG 60.250 55.000 2.64 0.00 42.62 3.21
962 1472 1.439228 GAGCGCTCAGGCTATCACA 59.561 57.895 31.91 0.00 44.93 3.58
1022 1546 1.538512 GTGGCGAGGTTTAGGGTTTTC 59.461 52.381 0.00 0.00 0.00 2.29
1596 2120 2.503895 AGACAATGAAGGGCAAGAGG 57.496 50.000 0.00 0.00 0.00 3.69
2031 2555 3.434984 CAGCTGCTGGTTTAGAAGTCTTC 59.565 47.826 21.71 4.26 34.18 2.87
2055 2579 0.379669 GCTCTGTTGATTGGCCATCG 59.620 55.000 6.09 0.00 34.08 3.84
2177 2701 3.629398 GCTCGAGTCATTCCCATTTTCAT 59.371 43.478 15.13 0.00 0.00 2.57
2292 2816 4.142160 CCAGACATTTCATCACTCCGACTA 60.142 45.833 0.00 0.00 0.00 2.59
2381 2905 1.953559 ACGCAGAACATCACACAAGT 58.046 45.000 0.00 0.00 0.00 3.16
2535 3059 6.331307 ACTCTTTCCTTAATGCAGGGATAGAT 59.669 38.462 15.43 8.16 36.90 1.98
2536 3060 5.667626 ACTCTTTCCTTAATGCAGGGATAGA 59.332 40.000 14.77 14.77 35.79 1.98
2763 3287 3.815401 CCAGGGCTTTCTTATAATGGTCG 59.185 47.826 0.00 0.00 0.00 4.79
2781 3305 7.533426 CAGATTTGTTATTTGAGACTTCCAGG 58.467 38.462 0.00 0.00 0.00 4.45
3195 3719 4.210331 AGTGCTTGTTCTTGGACAGATTT 58.790 39.130 0.00 0.00 0.00 2.17
3205 3729 5.581126 TCAACATTGAAGTGCTTGTTCTT 57.419 34.783 0.00 0.00 33.55 2.52
3206 3730 5.779529 ATCAACATTGAAGTGCTTGTTCT 57.220 34.783 0.00 0.00 41.13 3.01
3237 3761 0.824109 CGACAGAGGCCATCACCTTA 59.176 55.000 5.01 0.00 41.32 2.69
3264 3788 5.054477 GCTTCTTGAGTAAGTTGTGTACCA 58.946 41.667 0.00 0.00 35.38 3.25
3304 3834 4.801891 TCTTTGTTTGCATCATCTGAAGC 58.198 39.130 0.64 0.64 39.04 3.86
3409 3939 5.011943 GCCATCTTGCATATAATCCCCAAAA 59.988 40.000 0.00 0.00 0.00 2.44
3411 3941 4.088634 GCCATCTTGCATATAATCCCCAA 58.911 43.478 0.00 0.00 0.00 4.12
3504 4034 5.571791 TCTTCTGATCATGCCATAATCCA 57.428 39.130 0.00 0.00 0.00 3.41
3534 4064 3.678252 GCAGAGAAGCTTGAGCATACTGA 60.678 47.826 2.10 0.00 45.16 3.41
3535 4065 2.608546 GCAGAGAAGCTTGAGCATACTG 59.391 50.000 2.10 9.60 45.16 2.74
3728 4258 8.200024 ACCAAGATATCAGTAACTCTATGCAT 57.800 34.615 3.79 3.79 0.00 3.96
3769 4299 7.047891 GGTCTGTGATAAACCATATGACAAGA 58.952 38.462 3.65 0.00 33.11 3.02
3782 4312 8.754991 TTTTTCTGTAAAGGGTCTGTGATAAA 57.245 30.769 0.00 0.00 0.00 1.40
3813 4343 3.955551 AGGGTCTGCTTTTTCGGTAAAAA 59.044 39.130 0.00 0.00 41.21 1.94
3814 4344 3.558033 AGGGTCTGCTTTTTCGGTAAAA 58.442 40.909 0.00 0.00 34.64 1.52
3815 4345 3.217681 AGGGTCTGCTTTTTCGGTAAA 57.782 42.857 0.00 0.00 0.00 2.01
3816 4346 2.943036 AGGGTCTGCTTTTTCGGTAA 57.057 45.000 0.00 0.00 0.00 2.85
3817 4347 2.943036 AAGGGTCTGCTTTTTCGGTA 57.057 45.000 0.00 0.00 0.00 4.02
3818 4348 2.067365 AAAGGGTCTGCTTTTTCGGT 57.933 45.000 0.00 0.00 0.00 4.69
3819 4349 5.890424 TTATAAAGGGTCTGCTTTTTCGG 57.110 39.130 0.00 0.00 0.00 4.30
3820 4350 7.484959 GTCATTTATAAAGGGTCTGCTTTTTCG 59.515 37.037 9.79 0.00 0.00 3.46
3821 4351 8.303876 TGTCATTTATAAAGGGTCTGCTTTTTC 58.696 33.333 9.79 0.00 0.00 2.29
3822 4352 8.189119 TGTCATTTATAAAGGGTCTGCTTTTT 57.811 30.769 9.79 0.00 0.00 1.94
3823 4353 7.775053 TGTCATTTATAAAGGGTCTGCTTTT 57.225 32.000 9.79 0.00 0.00 2.27
3824 4354 7.577616 GCTTGTCATTTATAAAGGGTCTGCTTT 60.578 37.037 9.79 0.00 0.00 3.51
3825 4355 6.127619 GCTTGTCATTTATAAAGGGTCTGCTT 60.128 38.462 9.79 0.00 0.00 3.91
3826 4356 5.358160 GCTTGTCATTTATAAAGGGTCTGCT 59.642 40.000 9.79 0.00 0.00 4.24
3827 4357 5.125417 TGCTTGTCATTTATAAAGGGTCTGC 59.875 40.000 9.79 9.83 0.00 4.26
3868 4398 1.414181 ACTTGAGCATAGACCATCGGG 59.586 52.381 0.00 0.00 41.29 5.14
3952 4485 1.987770 GGATTGTGCGCTGAAACATTG 59.012 47.619 9.73 0.00 0.00 2.82
4038 4571 9.463443 AAACAGAAGCAACAGTACAAATATTTC 57.537 29.630 0.00 0.00 0.00 2.17
4102 4636 4.141274 TGGGAGAAAGAACAAACTGGATGA 60.141 41.667 0.00 0.00 0.00 2.92
4109 4643 5.536538 AGGAGAATTGGGAGAAAGAACAAAC 59.463 40.000 0.00 0.00 0.00 2.93
4110 4644 5.705400 AGGAGAATTGGGAGAAAGAACAAA 58.295 37.500 0.00 0.00 0.00 2.83
4158 5246 5.824904 AATTGGTACTGCAGAACATCATC 57.175 39.130 23.35 1.50 0.00 2.92
4264 5357 6.647334 TTGTCCATGCAAGAGTCAAAAATA 57.353 33.333 0.00 0.00 0.00 1.40
4266 5359 4.998671 TTGTCCATGCAAGAGTCAAAAA 57.001 36.364 0.00 0.00 0.00 1.94
4303 5407 9.793252 GACCACAATTTATCATATTATCCATGC 57.207 33.333 0.00 0.00 0.00 4.06
4306 5410 9.013229 GCTGACCACAATTTATCATATTATCCA 57.987 33.333 0.00 0.00 0.00 3.41
4307 5411 9.236006 AGCTGACCACAATTTATCATATTATCC 57.764 33.333 0.00 0.00 0.00 2.59
4309 5413 8.517878 GCAGCTGACCACAATTTATCATATTAT 58.482 33.333 20.43 0.00 0.00 1.28
4310 5414 7.720957 AGCAGCTGACCACAATTTATCATATTA 59.279 33.333 20.43 0.00 0.00 0.98
4311 5415 6.548622 AGCAGCTGACCACAATTTATCATATT 59.451 34.615 20.43 0.00 0.00 1.28
4312 5416 6.066690 AGCAGCTGACCACAATTTATCATAT 58.933 36.000 20.43 0.00 0.00 1.78
4313 5417 5.439721 AGCAGCTGACCACAATTTATCATA 58.560 37.500 20.43 0.00 0.00 2.15
4521 5652 6.024552 ACTGAATAACCAATTTGCGATGTT 57.975 33.333 0.00 0.00 0.00 2.71
4591 5722 6.259608 CCAAACAGGCAAAAACACATAAATGA 59.740 34.615 0.00 0.00 0.00 2.57
4592 5723 6.038050 ACCAAACAGGCAAAAACACATAAATG 59.962 34.615 0.00 0.00 43.14 2.32
4701 5865 9.062524 TGATTTGCAAACACAGTATTACTACTT 57.937 29.630 15.41 0.00 35.99 2.24
4800 5968 6.503570 TCCCAAGAACAAATCCCCAATATTTT 59.496 34.615 0.00 0.00 0.00 1.82
4801 5969 6.028780 TCCCAAGAACAAATCCCCAATATTT 58.971 36.000 0.00 0.00 0.00 1.40
4847 6015 4.839121 ACAGAGCACGTGGGATTAAAATA 58.161 39.130 18.88 0.00 0.00 1.40
4949 6117 7.865889 CACAACATAGACGTAGCATAATTCCTA 59.134 37.037 0.00 0.00 0.00 2.94
4958 6127 3.313012 AAGCACAACATAGACGTAGCA 57.687 42.857 0.00 0.00 0.00 3.49
4964 6133 3.999663 AGAGAGCAAAGCACAACATAGAC 59.000 43.478 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.