Multiple sequence alignment - TraesCS4A01G124100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G124100 chr4A 100.000 2291 0 0 1 2291 157319039 157316749 0.000000e+00 4231.0
1 TraesCS4A01G124100 chr4D 89.790 1283 75 29 642 1909 317541844 317543085 0.000000e+00 1592.0
2 TraesCS4A01G124100 chr4D 84.434 212 17 8 410 613 317541650 317541853 6.460000e-46 195.0
3 TraesCS4A01G124100 chr4B 90.350 1171 61 20 762 1911 394621271 394622410 0.000000e+00 1489.0
4 TraesCS4A01G124100 chr4B 94.656 131 5 2 644 772 394606733 394606863 3.860000e-48 202.0
5 TraesCS4A01G124100 chr5D 90.437 366 28 5 1911 2274 302353585 302353945 2.060000e-130 475.0
6 TraesCS4A01G124100 chr5D 87.678 211 19 6 247 453 339108722 339108929 2.940000e-59 239.0
7 TraesCS4A01G124100 chr2D 95.294 170 7 1 243 411 593801764 593801595 3.750000e-68 268.0
8 TraesCS4A01G124100 chr2D 94.737 171 8 1 241 410 637587904 637588074 4.850000e-67 265.0
9 TraesCS4A01G124100 chr3D 93.785 177 10 1 245 420 526050791 526050615 4.850000e-67 265.0
10 TraesCS4A01G124100 chr3D 93.103 174 11 1 247 419 396430331 396430158 1.050000e-63 254.0
11 TraesCS4A01G124100 chr6D 94.220 173 9 1 246 417 8921592 8921420 1.750000e-66 263.0
12 TraesCS4A01G124100 chr6D 93.296 179 10 2 240 416 41542657 41542479 1.750000e-66 263.0
13 TraesCS4A01G124100 chr3A 95.181 166 7 1 246 410 451717329 451717164 6.280000e-66 261.0
14 TraesCS4A01G124100 chrUn 93.605 172 10 1 246 416 112299216 112299387 2.920000e-64 255.0
15 TraesCS4A01G124100 chr1D 90.385 52 4 1 65 116 50073283 50073333 1.470000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G124100 chr4A 157316749 157319039 2290 True 4231.0 4231 100.000 1 2291 1 chr4A.!!$R1 2290
1 TraesCS4A01G124100 chr4D 317541650 317543085 1435 False 893.5 1592 87.112 410 1909 2 chr4D.!!$F1 1499
2 TraesCS4A01G124100 chr4B 394621271 394622410 1139 False 1489.0 1489 90.350 762 1911 1 chr4B.!!$F2 1149

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
536 537 0.323178 CTGGGCCTGCTCAATTCACT 60.323 55.0 4.53 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2069 2105 0.030638 GCCATCACAACACCACACAC 59.969 55.0 0.0 0.0 0.0 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.918630 AATTAGATGAACTTTGAGAATTTGGTG 57.081 29.630 0.00 0.00 0.00 4.17
72 73 8.690203 TTAGATGAACTTTGAGAATTTGGTGA 57.310 30.769 0.00 0.00 0.00 4.02
73 74 7.587037 AGATGAACTTTGAGAATTTGGTGAA 57.413 32.000 0.00 0.00 0.00 3.18
74 75 7.428826 AGATGAACTTTGAGAATTTGGTGAAC 58.571 34.615 0.00 0.00 0.00 3.18
75 76 6.522625 TGAACTTTGAGAATTTGGTGAACA 57.477 33.333 0.00 0.00 0.00 3.18
76 77 6.929625 TGAACTTTGAGAATTTGGTGAACAA 58.070 32.000 0.00 0.00 37.28 2.83
109 110 9.781633 AATTGGATGAACATTTTCTGAATTCAA 57.218 25.926 9.88 0.00 33.29 2.69
110 111 9.953565 ATTGGATGAACATTTTCTGAATTCAAT 57.046 25.926 9.88 0.00 33.29 2.57
111 112 8.766000 TGGATGAACATTTTCTGAATTCAATG 57.234 30.769 9.88 12.21 33.29 2.82
112 113 8.586744 TGGATGAACATTTTCTGAATTCAATGA 58.413 29.630 19.80 8.66 33.29 2.57
113 114 9.426837 GGATGAACATTTTCTGAATTCAATGAA 57.573 29.630 19.80 13.43 33.29 2.57
115 116 9.767228 ATGAACATTTTCTGAATTCAATGAACA 57.233 25.926 19.80 17.54 33.29 3.18
116 117 9.767228 TGAACATTTTCTGAATTCAATGAACAT 57.233 25.926 19.80 11.99 32.07 2.71
172 173 9.991388 AAAACATGAAGACATTTTTGAATTGTG 57.009 25.926 0.00 0.00 36.78 3.33
173 174 8.945481 AACATGAAGACATTTTTGAATTGTGA 57.055 26.923 0.00 0.00 34.15 3.58
174 175 9.550406 AACATGAAGACATTTTTGAATTGTGAT 57.450 25.926 0.00 0.00 34.15 3.06
175 176 8.984764 ACATGAAGACATTTTTGAATTGTGATG 58.015 29.630 0.00 0.00 34.15 3.07
176 177 9.198837 CATGAAGACATTTTTGAATTGTGATGA 57.801 29.630 0.00 0.00 34.15 2.92
177 178 8.806177 TGAAGACATTTTTGAATTGTGATGAG 57.194 30.769 0.00 0.00 0.00 2.90
178 179 7.383029 TGAAGACATTTTTGAATTGTGATGAGC 59.617 33.333 0.00 0.00 0.00 4.26
179 180 6.751157 AGACATTTTTGAATTGTGATGAGCA 58.249 32.000 0.00 0.00 0.00 4.26
180 181 7.383687 AGACATTTTTGAATTGTGATGAGCAT 58.616 30.769 0.00 0.00 0.00 3.79
181 182 7.876068 AGACATTTTTGAATTGTGATGAGCATT 59.124 29.630 0.00 0.00 0.00 3.56
182 183 8.385898 ACATTTTTGAATTGTGATGAGCATTT 57.614 26.923 0.00 0.00 0.00 2.32
183 184 8.842280 ACATTTTTGAATTGTGATGAGCATTTT 58.158 25.926 0.00 0.00 0.00 1.82
184 185 9.672086 CATTTTTGAATTGTGATGAGCATTTTT 57.328 25.926 0.00 0.00 0.00 1.94
210 211 9.605275 TTTAATTTGATGGACACACAATTTTCA 57.395 25.926 0.00 0.00 0.00 2.69
211 212 7.481275 AATTTGATGGACACACAATTTTCAC 57.519 32.000 0.00 0.00 0.00 3.18
212 213 5.588958 TTGATGGACACACAATTTTCACA 57.411 34.783 0.00 0.00 0.00 3.58
213 214 5.588958 TGATGGACACACAATTTTCACAA 57.411 34.783 0.00 0.00 0.00 3.33
214 215 6.159299 TGATGGACACACAATTTTCACAAT 57.841 33.333 0.00 0.00 0.00 2.71
215 216 6.580788 TGATGGACACACAATTTTCACAATT 58.419 32.000 0.00 0.00 0.00 2.32
216 217 7.046652 TGATGGACACACAATTTTCACAATTT 58.953 30.769 0.00 0.00 0.00 1.82
217 218 7.551974 TGATGGACACACAATTTTCACAATTTT 59.448 29.630 0.00 0.00 0.00 1.82
218 219 7.678947 TGGACACACAATTTTCACAATTTTT 57.321 28.000 0.00 0.00 0.00 1.94
219 220 8.777865 TGGACACACAATTTTCACAATTTTTA 57.222 26.923 0.00 0.00 0.00 1.52
220 221 9.219603 TGGACACACAATTTTCACAATTTTTAA 57.780 25.926 0.00 0.00 0.00 1.52
258 259 7.828508 AATTTTAAAAACTACTCCCTCCGTT 57.171 32.000 4.44 0.00 0.00 4.44
259 260 6.866010 TTTTAAAAACTACTCCCTCCGTTC 57.134 37.500 0.00 0.00 0.00 3.95
260 261 5.813513 TTAAAAACTACTCCCTCCGTTCT 57.186 39.130 0.00 0.00 0.00 3.01
261 262 6.916360 TTAAAAACTACTCCCTCCGTTCTA 57.084 37.500 0.00 0.00 0.00 2.10
262 263 5.813513 AAAAACTACTCCCTCCGTTCTAA 57.186 39.130 0.00 0.00 0.00 2.10
263 264 5.813513 AAAACTACTCCCTCCGTTCTAAA 57.186 39.130 0.00 0.00 0.00 1.85
264 265 6.370186 AAAACTACTCCCTCCGTTCTAAAT 57.630 37.500 0.00 0.00 0.00 1.40
265 266 7.486407 AAAACTACTCCCTCCGTTCTAAATA 57.514 36.000 0.00 0.00 0.00 1.40
266 267 7.672122 AAACTACTCCCTCCGTTCTAAATAT 57.328 36.000 0.00 0.00 0.00 1.28
267 268 8.773033 AAACTACTCCCTCCGTTCTAAATATA 57.227 34.615 0.00 0.00 0.00 0.86
268 269 8.773033 AACTACTCCCTCCGTTCTAAATATAA 57.227 34.615 0.00 0.00 0.00 0.98
269 270 8.406730 ACTACTCCCTCCGTTCTAAATATAAG 57.593 38.462 0.00 0.00 0.00 1.73
270 271 8.003629 ACTACTCCCTCCGTTCTAAATATAAGT 58.996 37.037 0.00 0.00 0.00 2.24
271 272 9.512588 CTACTCCCTCCGTTCTAAATATAAGTA 57.487 37.037 0.00 0.00 0.00 2.24
272 273 8.953223 ACTCCCTCCGTTCTAAATATAAGTAT 57.047 34.615 0.00 0.00 0.00 2.12
273 274 9.377238 ACTCCCTCCGTTCTAAATATAAGTATT 57.623 33.333 0.00 0.00 31.89 1.89
307 308 7.709269 TCCAATAAATGACTACATACGAAGC 57.291 36.000 0.00 0.00 35.50 3.86
308 309 7.269316 TCCAATAAATGACTACATACGAAGCA 58.731 34.615 0.00 0.00 35.50 3.91
309 310 7.766738 TCCAATAAATGACTACATACGAAGCAA 59.233 33.333 0.00 0.00 35.50 3.91
310 311 8.394877 CCAATAAATGACTACATACGAAGCAAA 58.605 33.333 0.00 0.00 35.50 3.68
311 312 9.767684 CAATAAATGACTACATACGAAGCAAAA 57.232 29.630 0.00 0.00 35.50 2.44
313 314 9.935682 ATAAATGACTACATACGAAGCAAAATG 57.064 29.630 0.00 0.00 35.50 2.32
314 315 7.609760 AATGACTACATACGAAGCAAAATGA 57.390 32.000 0.00 0.00 35.50 2.57
315 316 6.647212 TGACTACATACGAAGCAAAATGAG 57.353 37.500 0.00 0.00 0.00 2.90
316 317 6.163476 TGACTACATACGAAGCAAAATGAGT 58.837 36.000 0.00 0.00 0.00 3.41
317 318 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
318 319 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
319 320 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
320 321 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
321 322 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
322 323 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
323 324 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
324 325 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
325 326 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
326 327 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
386 387 9.136323 AGTCCATTTGAAATGTCTAAAAAGACT 57.864 29.630 15.93 14.21 39.41 3.24
387 388 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
404 405 8.959705 AAAAGACTTATATTTAGGAACGGAGG 57.040 34.615 0.00 0.00 0.00 4.30
405 406 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
406 407 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
407 408 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
408 409 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
415 416 2.108970 GGAACGGAGGGAGTATCTGTT 58.891 52.381 0.00 0.00 46.42 3.16
428 429 9.853177 AGGGAGTATCTGTTAAATGGAAAATAG 57.147 33.333 0.00 0.00 33.73 1.73
435 436 9.942526 ATCTGTTAAATGGAAAATAGAGGGAAT 57.057 29.630 0.00 0.00 0.00 3.01
532 533 2.753043 CGCTGGGCCTGCTCAATT 60.753 61.111 29.26 0.00 0.00 2.32
533 534 2.768492 CGCTGGGCCTGCTCAATTC 61.768 63.158 29.26 3.15 0.00 2.17
534 535 1.679977 GCTGGGCCTGCTCAATTCA 60.680 57.895 26.17 0.00 0.00 2.57
536 537 0.323178 CTGGGCCTGCTCAATTCACT 60.323 55.000 4.53 0.00 0.00 3.41
539 540 1.251251 GGCCTGCTCAATTCACTGTT 58.749 50.000 0.00 0.00 0.00 3.16
541 542 1.668047 GCCTGCTCAATTCACTGTTGC 60.668 52.381 0.00 0.00 0.00 4.17
542 543 1.884579 CCTGCTCAATTCACTGTTGCT 59.115 47.619 0.00 0.00 0.00 3.91
557 566 2.954868 GCTCGTCATACCGCCGTG 60.955 66.667 0.00 0.00 0.00 4.94
558 567 2.954868 CTCGTCATACCGCCGTGC 60.955 66.667 0.00 0.00 0.00 5.34
560 569 4.508128 CGTCATACCGCCGTGCCT 62.508 66.667 0.00 0.00 0.00 4.75
561 570 2.890474 GTCATACCGCCGTGCCTG 60.890 66.667 0.00 0.00 0.00 4.85
562 571 4.155733 TCATACCGCCGTGCCTGG 62.156 66.667 0.00 0.00 0.00 4.45
605 614 2.995547 GGCCCACCGAATACCAGT 59.004 61.111 0.00 0.00 0.00 4.00
606 615 2.214235 GGCCCACCGAATACCAGTA 58.786 57.895 0.00 0.00 0.00 2.74
607 616 0.763035 GGCCCACCGAATACCAGTAT 59.237 55.000 0.00 0.00 0.00 2.12
608 617 1.542547 GGCCCACCGAATACCAGTATG 60.543 57.143 0.00 0.00 0.00 2.39
609 618 1.140252 GCCCACCGAATACCAGTATGT 59.860 52.381 0.00 0.00 0.00 2.29
610 619 2.833794 CCCACCGAATACCAGTATGTG 58.166 52.381 0.00 0.00 0.00 3.21
611 620 2.169769 CCCACCGAATACCAGTATGTGT 59.830 50.000 6.20 0.00 0.00 3.72
612 621 3.194861 CCACCGAATACCAGTATGTGTG 58.805 50.000 6.20 6.75 0.00 3.82
613 622 3.369052 CCACCGAATACCAGTATGTGTGT 60.369 47.826 10.90 0.00 0.00 3.72
614 623 3.616821 CACCGAATACCAGTATGTGTGTG 59.383 47.826 0.00 0.00 0.00 3.82
615 624 3.259876 ACCGAATACCAGTATGTGTGTGT 59.740 43.478 0.00 0.00 0.00 3.72
616 625 4.250464 CCGAATACCAGTATGTGTGTGTT 58.750 43.478 0.00 0.00 0.00 3.32
617 626 4.693566 CCGAATACCAGTATGTGTGTGTTT 59.306 41.667 0.00 0.00 0.00 2.83
618 627 5.180492 CCGAATACCAGTATGTGTGTGTTTT 59.820 40.000 0.00 0.00 0.00 2.43
619 628 6.293735 CCGAATACCAGTATGTGTGTGTTTTT 60.294 38.462 0.00 0.00 0.00 1.94
732 743 1.218316 CCCCCTCGTGTGCTAAGTC 59.782 63.158 0.00 0.00 0.00 3.01
748 759 9.244292 TGTGCTAAGTCTAGAGAAGATTTTCTA 57.756 33.333 0.00 0.00 43.63 2.10
782 793 7.713734 GTCTAGAGACTAGATAGAGGCTAGA 57.286 44.000 10.92 0.00 41.65 2.43
848 864 1.607628 AGTACGAACAAGAGACACGCT 59.392 47.619 0.00 0.00 0.00 5.07
892 908 3.114809 CGTAACACGTTACACTTCCACA 58.885 45.455 17.67 0.00 44.12 4.17
913 929 2.523740 TAGACGGCTCCACCCCATCA 62.524 60.000 0.00 0.00 33.26 3.07
936 952 0.465460 AAAACAACCTCGAGCCAGCA 60.465 50.000 6.99 0.00 0.00 4.41
939 955 2.357517 AACCTCGAGCCAGCAACG 60.358 61.111 6.99 0.00 0.00 4.10
1041 1057 3.227276 CTCCGGTGGCCGCTAGAT 61.227 66.667 17.49 0.00 46.86 1.98
1049 1065 2.913060 GCCGCTAGATCTCGGGGT 60.913 66.667 25.32 0.00 45.37 4.95
1053 1069 1.519751 CGCTAGATCTCGGGGTCCTG 61.520 65.000 0.00 0.00 0.00 3.86
1218 1234 4.681978 GTGCTCTGGGGCGTCGTT 62.682 66.667 0.00 0.00 34.52 3.85
1221 1237 2.183555 CTCTGGGGCGTCGTTACC 59.816 66.667 0.00 0.00 0.00 2.85
1328 1344 0.033228 CGGAGGAAGGATGCAGCTAG 59.967 60.000 0.22 0.00 0.00 3.42
1370 1386 6.805760 GCTATACTATGTACGGTTAGCCTTTC 59.194 42.308 0.00 0.00 0.00 2.62
1383 1399 3.813529 AGCCTTTCGATTTCTTTGTCG 57.186 42.857 0.00 0.00 39.11 4.35
1407 1429 4.142622 CCATGCTGTGTTCATCATACGTTT 60.143 41.667 0.00 0.00 30.59 3.60
1468 1499 9.069082 TGCTTGCTTTAGTACTAATTTGGTAAA 57.931 29.630 15.92 0.00 0.00 2.01
1469 1500 9.902196 GCTTGCTTTAGTACTAATTTGGTAAAA 57.098 29.630 15.92 0.00 0.00 1.52
1526 1557 3.019564 GGTAGTACCTAGGAAGCGTGAA 58.980 50.000 17.98 0.00 34.73 3.18
1569 1600 1.082104 GGTTTTCTTGTCGGCGCTG 60.082 57.895 10.86 10.86 0.00 5.18
1608 1639 4.344102 TGAGGTAGAATAGGACGGATTTGG 59.656 45.833 0.00 0.00 0.00 3.28
1614 1645 1.646912 TAGGACGGATTTGGGTGACA 58.353 50.000 0.00 0.00 0.00 3.58
1615 1646 0.324943 AGGACGGATTTGGGTGACAG 59.675 55.000 0.00 0.00 0.00 3.51
1621 1653 1.648467 GATTTGGGTGACAGGCGCTC 61.648 60.000 7.64 0.00 0.00 5.03
1671 1703 3.562232 GTGGGAACGGGGGTGACA 61.562 66.667 0.00 0.00 0.00 3.58
1674 1706 2.125269 GGAACGGGGGTGACATCG 60.125 66.667 0.00 0.00 0.00 3.84
1678 1710 0.392461 AACGGGGGTGACATCGATTG 60.392 55.000 0.00 0.00 0.00 2.67
1693 1729 7.225341 TGACATCGATTGTGGAAAATATCTCTG 59.775 37.037 0.00 0.00 39.18 3.35
1716 1752 0.178767 CTCATCATCCCGGTCAAGCA 59.821 55.000 0.00 0.00 0.00 3.91
1820 1856 8.247562 TGTATATTTGTGTTGTTCCTAATTGGC 58.752 33.333 0.00 0.00 35.26 4.52
1824 1860 1.892474 TGTTGTTCCTAATTGGCAGGC 59.108 47.619 0.00 0.00 35.26 4.85
1838 1874 2.594592 AGGCGGTTGTGGAGTTGC 60.595 61.111 0.00 0.00 0.00 4.17
1839 1875 3.670377 GGCGGTTGTGGAGTTGCC 61.670 66.667 0.00 0.00 35.04 4.52
1864 1900 3.181493 ACAGTCGTACAAGTCTCGTTTGT 60.181 43.478 0.00 0.00 41.36 2.83
1885 1921 3.512033 AAGGTTAGAGCAACTCTAGCG 57.488 47.619 10.96 0.00 42.92 4.26
1888 1924 2.165845 GGTTAGAGCAACTCTAGCGGAA 59.834 50.000 10.96 0.00 42.92 4.30
1911 1947 0.623723 TTGTAGGGCTCCAATGGTCC 59.376 55.000 0.00 1.84 0.00 4.46
1912 1948 1.146263 GTAGGGCTCCAATGGTCCG 59.854 63.158 0.00 0.00 0.00 4.79
1913 1949 2.742116 TAGGGCTCCAATGGTCCGC 61.742 63.158 0.00 0.72 0.00 5.54
1915 1951 4.778143 GGCTCCAATGGTCCGCGT 62.778 66.667 4.92 0.00 0.00 6.01
1916 1952 3.195698 GCTCCAATGGTCCGCGTC 61.196 66.667 4.92 0.00 0.00 5.19
1917 1953 2.885644 CTCCAATGGTCCGCGTCG 60.886 66.667 4.92 0.00 0.00 5.12
1918 1954 3.642778 CTCCAATGGTCCGCGTCGT 62.643 63.158 4.92 0.00 0.00 4.34
1919 1955 3.186047 CCAATGGTCCGCGTCGTC 61.186 66.667 4.92 0.00 0.00 4.20
1920 1956 3.186047 CAATGGTCCGCGTCGTCC 61.186 66.667 4.92 2.12 0.00 4.79
1921 1957 4.789075 AATGGTCCGCGTCGTCCG 62.789 66.667 4.92 0.00 40.40 4.79
1946 1982 4.803426 GACTCGGGCAGCGTCCAG 62.803 72.222 0.00 0.00 0.00 3.86
1948 1984 3.842923 CTCGGGCAGCGTCCAGAT 61.843 66.667 1.29 0.00 30.17 2.90
1949 1985 3.781770 CTCGGGCAGCGTCCAGATC 62.782 68.421 1.29 0.00 30.17 2.75
1950 1986 4.899239 CGGGCAGCGTCCAGATCC 62.899 72.222 0.41 0.00 0.00 3.36
1951 1987 4.899239 GGGCAGCGTCCAGATCCG 62.899 72.222 0.00 0.00 0.00 4.18
1952 1988 3.838271 GGCAGCGTCCAGATCCGA 61.838 66.667 0.00 0.00 0.00 4.55
1953 1989 2.419198 GCAGCGTCCAGATCCGAT 59.581 61.111 0.00 0.00 0.00 4.18
1954 1990 1.660355 GCAGCGTCCAGATCCGATA 59.340 57.895 0.00 0.00 0.00 2.92
1955 1991 0.032130 GCAGCGTCCAGATCCGATAA 59.968 55.000 0.00 0.00 0.00 1.75
1956 1992 1.337260 GCAGCGTCCAGATCCGATAAT 60.337 52.381 0.00 0.00 0.00 1.28
1957 1993 2.600731 CAGCGTCCAGATCCGATAATC 58.399 52.381 0.00 0.00 0.00 1.75
1958 1994 2.230025 CAGCGTCCAGATCCGATAATCT 59.770 50.000 0.00 0.00 36.41 2.40
1959 1995 2.490115 AGCGTCCAGATCCGATAATCTC 59.510 50.000 0.00 0.00 33.68 2.75
1975 2011 3.197614 TCGACAGCCTCGATCCAC 58.802 61.111 0.03 0.00 46.75 4.02
1976 2012 2.278206 CGACAGCCTCGATCCACG 60.278 66.667 0.00 0.00 46.14 4.94
1977 2013 2.583593 GACAGCCTCGATCCACGC 60.584 66.667 0.00 0.00 42.26 5.34
1978 2014 3.356639 GACAGCCTCGATCCACGCA 62.357 63.158 0.00 0.00 42.26 5.24
1979 2015 2.887568 CAGCCTCGATCCACGCAC 60.888 66.667 0.00 0.00 42.26 5.34
1980 2016 4.148825 AGCCTCGATCCACGCACC 62.149 66.667 0.00 0.00 42.26 5.01
1982 2018 3.461773 CCTCGATCCACGCACCCT 61.462 66.667 0.00 0.00 42.26 4.34
1983 2019 2.105128 CTCGATCCACGCACCCTC 59.895 66.667 0.00 0.00 42.26 4.30
1984 2020 3.432051 CTCGATCCACGCACCCTCC 62.432 68.421 0.00 0.00 42.26 4.30
1985 2021 4.530857 CGATCCACGCACCCTCCC 62.531 72.222 0.00 0.00 34.51 4.30
1986 2022 4.176752 GATCCACGCACCCTCCCC 62.177 72.222 0.00 0.00 0.00 4.81
1987 2023 4.741239 ATCCACGCACCCTCCCCT 62.741 66.667 0.00 0.00 0.00 4.79
2026 2062 4.308458 CCGGGCTTGTCCACGTGA 62.308 66.667 19.30 0.00 36.21 4.35
2027 2063 3.041940 CGGGCTTGTCCACGTGAC 61.042 66.667 19.30 13.69 44.72 3.67
2028 2064 2.668550 GGGCTTGTCCACGTGACC 60.669 66.667 19.30 7.33 43.78 4.02
2029 2065 2.110213 GGCTTGTCCACGTGACCA 59.890 61.111 19.30 10.17 43.78 4.02
2030 2066 1.525077 GGCTTGTCCACGTGACCAA 60.525 57.895 19.30 17.10 43.78 3.67
2031 2067 1.647084 GCTTGTCCACGTGACCAAC 59.353 57.895 19.30 10.01 43.78 3.77
2058 2094 3.732849 GGGGCTCCCTCCCTGTTG 61.733 72.222 4.74 0.00 45.80 3.33
2059 2095 4.432741 GGGCTCCCTCCCTGTTGC 62.433 72.222 0.00 0.00 43.13 4.17
2060 2096 3.334054 GGCTCCCTCCCTGTTGCT 61.334 66.667 0.00 0.00 0.00 3.91
2061 2097 2.045536 GCTCCCTCCCTGTTGCTG 60.046 66.667 0.00 0.00 0.00 4.41
2062 2098 2.596851 GCTCCCTCCCTGTTGCTGA 61.597 63.158 0.00 0.00 0.00 4.26
2063 2099 1.919600 GCTCCCTCCCTGTTGCTGAT 61.920 60.000 0.00 0.00 0.00 2.90
2064 2100 0.179936 CTCCCTCCCTGTTGCTGATC 59.820 60.000 0.00 0.00 0.00 2.92
2065 2101 0.547471 TCCCTCCCTGTTGCTGATCA 60.547 55.000 0.00 0.00 0.00 2.92
2066 2102 0.107312 CCCTCCCTGTTGCTGATCAG 60.107 60.000 18.84 18.84 0.00 2.90
2068 2104 0.617413 CTCCCTGTTGCTGATCAGGT 59.383 55.000 23.89 0.00 46.79 4.00
2069 2105 0.325933 TCCCTGTTGCTGATCAGGTG 59.674 55.000 23.89 0.02 46.79 4.00
2070 2106 0.037303 CCCTGTTGCTGATCAGGTGT 59.963 55.000 23.89 0.00 46.79 4.16
2071 2107 1.162698 CCTGTTGCTGATCAGGTGTG 58.837 55.000 23.89 0.00 44.19 3.82
2072 2108 1.544093 CCTGTTGCTGATCAGGTGTGT 60.544 52.381 23.89 0.00 44.19 3.72
2073 2109 1.534163 CTGTTGCTGATCAGGTGTGTG 59.466 52.381 23.89 0.00 0.00 3.82
2074 2110 1.134128 TGTTGCTGATCAGGTGTGTGT 60.134 47.619 23.89 0.00 0.00 3.72
2075 2111 1.265095 GTTGCTGATCAGGTGTGTGTG 59.735 52.381 23.89 0.00 0.00 3.82
2076 2112 0.250424 TGCTGATCAGGTGTGTGTGG 60.250 55.000 23.89 0.00 0.00 4.17
2077 2113 0.250467 GCTGATCAGGTGTGTGTGGT 60.250 55.000 23.89 0.00 0.00 4.16
2078 2114 1.516161 CTGATCAGGTGTGTGTGGTG 58.484 55.000 15.38 0.00 0.00 4.17
2079 2115 0.836606 TGATCAGGTGTGTGTGGTGT 59.163 50.000 0.00 0.00 0.00 4.16
2080 2116 1.211703 TGATCAGGTGTGTGTGGTGTT 59.788 47.619 0.00 0.00 0.00 3.32
2081 2117 1.603802 GATCAGGTGTGTGTGGTGTTG 59.396 52.381 0.00 0.00 0.00 3.33
2082 2118 0.326595 TCAGGTGTGTGTGGTGTTGT 59.673 50.000 0.00 0.00 0.00 3.32
2083 2119 0.451383 CAGGTGTGTGTGGTGTTGTG 59.549 55.000 0.00 0.00 0.00 3.33
2084 2120 0.326595 AGGTGTGTGTGGTGTTGTGA 59.673 50.000 0.00 0.00 0.00 3.58
2085 2121 1.064758 AGGTGTGTGTGGTGTTGTGAT 60.065 47.619 0.00 0.00 0.00 3.06
2086 2122 1.065401 GGTGTGTGTGGTGTTGTGATG 59.935 52.381 0.00 0.00 0.00 3.07
2087 2123 1.065401 GTGTGTGTGGTGTTGTGATGG 59.935 52.381 0.00 0.00 0.00 3.51
2088 2124 0.030638 GTGTGTGGTGTTGTGATGGC 59.969 55.000 0.00 0.00 0.00 4.40
2089 2125 0.394899 TGTGTGGTGTTGTGATGGCA 60.395 50.000 0.00 0.00 0.00 4.92
2090 2126 0.743688 GTGTGGTGTTGTGATGGCAA 59.256 50.000 0.00 0.00 0.00 4.52
2091 2127 0.743688 TGTGGTGTTGTGATGGCAAC 59.256 50.000 0.00 2.38 46.36 4.17
2095 2131 3.354678 GTTGTGATGGCAACGGCT 58.645 55.556 0.00 0.00 39.20 5.52
2096 2132 1.659794 GTTGTGATGGCAACGGCTT 59.340 52.632 0.00 0.00 39.20 4.35
2097 2133 0.664166 GTTGTGATGGCAACGGCTTG 60.664 55.000 0.00 0.00 39.20 4.01
2104 2140 3.747976 GCAACGGCTTGCGGGAAT 61.748 61.111 6.03 0.00 43.42 3.01
2105 2141 2.179018 CAACGGCTTGCGGGAATG 59.821 61.111 5.24 0.00 0.00 2.67
2106 2142 3.061848 AACGGCTTGCGGGAATGG 61.062 61.111 5.24 0.00 0.00 3.16
2107 2143 3.561120 AACGGCTTGCGGGAATGGA 62.561 57.895 5.24 0.00 0.00 3.41
2108 2144 2.516930 CGGCTTGCGGGAATGGAT 60.517 61.111 0.00 0.00 0.00 3.41
2109 2145 2.837883 CGGCTTGCGGGAATGGATG 61.838 63.158 0.00 0.00 0.00 3.51
2110 2146 1.754234 GGCTTGCGGGAATGGATGT 60.754 57.895 0.00 0.00 0.00 3.06
2111 2147 1.434696 GCTTGCGGGAATGGATGTG 59.565 57.895 0.00 0.00 0.00 3.21
2112 2148 2.008268 GCTTGCGGGAATGGATGTGG 62.008 60.000 0.00 0.00 0.00 4.17
2113 2149 0.680921 CTTGCGGGAATGGATGTGGT 60.681 55.000 0.00 0.00 0.00 4.16
2114 2150 0.251564 TTGCGGGAATGGATGTGGTT 60.252 50.000 0.00 0.00 0.00 3.67
2115 2151 0.964860 TGCGGGAATGGATGTGGTTG 60.965 55.000 0.00 0.00 0.00 3.77
2116 2152 0.679640 GCGGGAATGGATGTGGTTGA 60.680 55.000 0.00 0.00 0.00 3.18
2117 2153 1.832883 CGGGAATGGATGTGGTTGAA 58.167 50.000 0.00 0.00 0.00 2.69
2118 2154 1.745087 CGGGAATGGATGTGGTTGAAG 59.255 52.381 0.00 0.00 0.00 3.02
2119 2155 1.478105 GGGAATGGATGTGGTTGAAGC 59.522 52.381 0.00 0.00 0.00 3.86
2120 2156 2.170166 GGAATGGATGTGGTTGAAGCA 58.830 47.619 0.00 0.00 0.00 3.91
2121 2157 2.165030 GGAATGGATGTGGTTGAAGCAG 59.835 50.000 0.00 0.00 0.00 4.24
2122 2158 1.180029 ATGGATGTGGTTGAAGCAGC 58.820 50.000 0.00 0.00 0.00 5.25
2123 2159 1.236616 TGGATGTGGTTGAAGCAGCG 61.237 55.000 0.00 0.00 0.00 5.18
2124 2160 1.503542 GATGTGGTTGAAGCAGCGG 59.496 57.895 0.00 0.00 0.00 5.52
2125 2161 2.533391 GATGTGGTTGAAGCAGCGGC 62.533 60.000 0.00 0.00 41.61 6.53
2147 2183 4.504916 CAGCCTCCGAGCACCGAG 62.505 72.222 0.00 0.00 41.76 4.63
2148 2184 4.742649 AGCCTCCGAGCACCGAGA 62.743 66.667 1.35 0.00 41.76 4.04
2149 2185 4.200283 GCCTCCGAGCACCGAGAG 62.200 72.222 1.35 5.81 41.76 3.20
2150 2186 4.200283 CCTCCGAGCACCGAGAGC 62.200 72.222 1.35 0.00 41.76 4.09
2151 2187 3.443925 CTCCGAGCACCGAGAGCA 61.444 66.667 0.00 0.00 41.76 4.26
2152 2188 3.691744 CTCCGAGCACCGAGAGCAC 62.692 68.421 0.00 0.00 41.76 4.40
2154 2190 4.103103 CGAGCACCGAGAGCACGA 62.103 66.667 7.49 0.00 46.48 4.35
2155 2191 2.505118 GAGCACCGAGAGCACGAC 60.505 66.667 0.00 0.00 35.09 4.34
2156 2192 2.983930 GAGCACCGAGAGCACGACT 61.984 63.158 0.00 0.00 35.09 4.18
2157 2193 2.505118 GCACCGAGAGCACGACTC 60.505 66.667 0.00 0.00 46.66 3.36
2164 2200 2.363147 GAGCACGACTCCCCCTCT 60.363 66.667 0.00 0.00 39.75 3.69
2165 2201 1.985116 GAGCACGACTCCCCCTCTT 60.985 63.158 0.00 0.00 39.75 2.85
2166 2202 1.950973 GAGCACGACTCCCCCTCTTC 61.951 65.000 0.00 0.00 39.75 2.87
2167 2203 1.985116 GCACGACTCCCCCTCTTCT 60.985 63.158 0.00 0.00 0.00 2.85
2168 2204 1.893786 CACGACTCCCCCTCTTCTG 59.106 63.158 0.00 0.00 0.00 3.02
2169 2205 0.612174 CACGACTCCCCCTCTTCTGA 60.612 60.000 0.00 0.00 0.00 3.27
2170 2206 0.336737 ACGACTCCCCCTCTTCTGAT 59.663 55.000 0.00 0.00 0.00 2.90
2171 2207 1.273324 ACGACTCCCCCTCTTCTGATT 60.273 52.381 0.00 0.00 0.00 2.57
2172 2208 1.137872 CGACTCCCCCTCTTCTGATTG 59.862 57.143 0.00 0.00 0.00 2.67
2173 2209 0.915364 ACTCCCCCTCTTCTGATTGC 59.085 55.000 0.00 0.00 0.00 3.56
2174 2210 0.179062 CTCCCCCTCTTCTGATTGCG 60.179 60.000 0.00 0.00 0.00 4.85
2175 2211 0.909610 TCCCCCTCTTCTGATTGCGT 60.910 55.000 0.00 0.00 0.00 5.24
2176 2212 0.462759 CCCCCTCTTCTGATTGCGTC 60.463 60.000 0.00 0.00 0.00 5.19
2177 2213 0.250234 CCCCTCTTCTGATTGCGTCA 59.750 55.000 0.00 0.00 35.05 4.35
2189 2225 4.420143 GCGTCAGTATCGCCATGT 57.580 55.556 0.00 0.00 46.61 3.21
2190 2226 2.677971 GCGTCAGTATCGCCATGTT 58.322 52.632 0.00 0.00 46.61 2.71
2191 2227 0.301687 GCGTCAGTATCGCCATGTTG 59.698 55.000 0.00 0.00 46.61 3.33
2192 2228 0.301687 CGTCAGTATCGCCATGTTGC 59.698 55.000 0.00 0.00 0.00 4.17
2214 2250 3.819188 GCATCAAGCGAAGGAGGG 58.181 61.111 0.00 0.00 0.00 4.30
2215 2251 1.221840 GCATCAAGCGAAGGAGGGA 59.778 57.895 0.00 0.00 0.00 4.20
2216 2252 0.392998 GCATCAAGCGAAGGAGGGAA 60.393 55.000 0.00 0.00 0.00 3.97
2217 2253 1.950484 GCATCAAGCGAAGGAGGGAAA 60.950 52.381 0.00 0.00 0.00 3.13
2218 2254 2.012673 CATCAAGCGAAGGAGGGAAAG 58.987 52.381 0.00 0.00 0.00 2.62
2219 2255 0.324943 TCAAGCGAAGGAGGGAAAGG 59.675 55.000 0.00 0.00 0.00 3.11
2220 2256 0.324943 CAAGCGAAGGAGGGAAAGGA 59.675 55.000 0.00 0.00 0.00 3.36
2221 2257 0.325272 AAGCGAAGGAGGGAAAGGAC 59.675 55.000 0.00 0.00 0.00 3.85
2222 2258 1.078356 GCGAAGGAGGGAAAGGACC 60.078 63.158 0.00 0.00 0.00 4.46
2223 2259 1.838073 GCGAAGGAGGGAAAGGACCA 61.838 60.000 0.00 0.00 0.00 4.02
2224 2260 0.690762 CGAAGGAGGGAAAGGACCAA 59.309 55.000 0.00 0.00 0.00 3.67
2225 2261 1.610886 CGAAGGAGGGAAAGGACCAAC 60.611 57.143 0.00 0.00 0.00 3.77
2226 2262 1.423921 GAAGGAGGGAAAGGACCAACA 59.576 52.381 0.00 0.00 0.00 3.33
2227 2263 1.760405 AGGAGGGAAAGGACCAACAT 58.240 50.000 0.00 0.00 0.00 2.71
2228 2264 1.636003 AGGAGGGAAAGGACCAACATC 59.364 52.381 0.00 0.00 0.00 3.06
2229 2265 1.636003 GGAGGGAAAGGACCAACATCT 59.364 52.381 0.00 0.00 0.00 2.90
2230 2266 2.619074 GGAGGGAAAGGACCAACATCTG 60.619 54.545 0.00 0.00 0.00 2.90
2231 2267 1.177401 GGGAAAGGACCAACATCTGC 58.823 55.000 0.00 0.00 0.00 4.26
2232 2268 1.177401 GGAAAGGACCAACATCTGCC 58.823 55.000 0.00 0.00 0.00 4.85
2233 2269 1.547675 GGAAAGGACCAACATCTGCCA 60.548 52.381 0.00 0.00 0.00 4.92
2234 2270 2.450476 GAAAGGACCAACATCTGCCAT 58.550 47.619 0.00 0.00 0.00 4.40
2235 2271 1.843368 AAGGACCAACATCTGCCATG 58.157 50.000 0.00 0.00 0.00 3.66
2236 2272 0.994247 AGGACCAACATCTGCCATGA 59.006 50.000 0.00 0.00 0.00 3.07
2237 2273 1.098050 GGACCAACATCTGCCATGAC 58.902 55.000 0.00 0.00 0.00 3.06
2238 2274 1.098050 GACCAACATCTGCCATGACC 58.902 55.000 0.00 0.00 0.00 4.02
2239 2275 0.323725 ACCAACATCTGCCATGACCC 60.324 55.000 0.00 0.00 0.00 4.46
2240 2276 0.033796 CCAACATCTGCCATGACCCT 60.034 55.000 0.00 0.00 0.00 4.34
2241 2277 1.212688 CCAACATCTGCCATGACCCTA 59.787 52.381 0.00 0.00 0.00 3.53
2242 2278 2.292267 CAACATCTGCCATGACCCTAC 58.708 52.381 0.00 0.00 0.00 3.18
2243 2279 0.465705 ACATCTGCCATGACCCTACG 59.534 55.000 0.00 0.00 0.00 3.51
2244 2280 0.465705 CATCTGCCATGACCCTACGT 59.534 55.000 0.00 0.00 0.00 3.57
2245 2281 0.465705 ATCTGCCATGACCCTACGTG 59.534 55.000 0.00 0.00 0.00 4.49
2246 2282 1.153369 CTGCCATGACCCTACGTGG 60.153 63.158 0.00 0.00 46.30 4.94
2247 2283 1.899437 CTGCCATGACCCTACGTGGT 61.899 60.000 0.00 0.00 45.58 4.16
2248 2284 1.449601 GCCATGACCCTACGTGGTG 60.450 63.158 1.67 0.00 45.58 4.17
2249 2285 1.895020 GCCATGACCCTACGTGGTGA 61.895 60.000 1.67 0.00 45.58 4.02
2250 2286 0.175760 CCATGACCCTACGTGGTGAG 59.824 60.000 1.67 0.00 39.24 3.51
2251 2287 0.460284 CATGACCCTACGTGGTGAGC 60.460 60.000 1.67 0.00 39.24 4.26
2252 2288 1.614241 ATGACCCTACGTGGTGAGCC 61.614 60.000 1.67 0.00 39.24 4.70
2253 2289 1.982938 GACCCTACGTGGTGAGCCT 60.983 63.158 1.67 0.00 39.24 4.58
2254 2290 2.227089 GACCCTACGTGGTGAGCCTG 62.227 65.000 1.67 0.00 39.24 4.85
2255 2291 2.283529 CCCTACGTGGTGAGCCTGT 61.284 63.158 0.00 0.00 35.27 4.00
2256 2292 1.671742 CCTACGTGGTGAGCCTGTT 59.328 57.895 0.00 0.00 35.27 3.16
2257 2293 0.389948 CCTACGTGGTGAGCCTGTTC 60.390 60.000 0.00 0.00 35.27 3.18
2258 2294 0.317160 CTACGTGGTGAGCCTGTTCA 59.683 55.000 0.00 0.00 35.27 3.18
2259 2295 0.753867 TACGTGGTGAGCCTGTTCAA 59.246 50.000 0.00 0.00 35.27 2.69
2260 2296 0.532862 ACGTGGTGAGCCTGTTCAAG 60.533 55.000 0.00 0.00 35.27 3.02
2261 2297 0.249868 CGTGGTGAGCCTGTTCAAGA 60.250 55.000 0.00 0.00 35.27 3.02
2262 2298 1.609061 CGTGGTGAGCCTGTTCAAGAT 60.609 52.381 0.00 0.00 35.27 2.40
2263 2299 2.079925 GTGGTGAGCCTGTTCAAGATC 58.920 52.381 0.00 0.00 35.27 2.75
2264 2300 1.980765 TGGTGAGCCTGTTCAAGATCT 59.019 47.619 0.00 0.00 35.27 2.75
2265 2301 2.027745 TGGTGAGCCTGTTCAAGATCTC 60.028 50.000 0.00 0.00 35.27 2.75
2266 2302 2.027745 GGTGAGCCTGTTCAAGATCTCA 60.028 50.000 0.00 0.00 34.81 3.27
2267 2303 2.999355 GTGAGCCTGTTCAAGATCTCAC 59.001 50.000 0.00 4.72 42.99 3.51
2268 2304 2.266554 GAGCCTGTTCAAGATCTCACG 58.733 52.381 0.00 0.00 0.00 4.35
2269 2305 1.620819 AGCCTGTTCAAGATCTCACGT 59.379 47.619 0.00 0.00 0.00 4.49
2270 2306 1.728971 GCCTGTTCAAGATCTCACGTG 59.271 52.381 9.94 9.94 0.00 4.49
2271 2307 2.341257 CCTGTTCAAGATCTCACGTGG 58.659 52.381 17.00 6.71 0.00 4.94
2272 2308 2.289072 CCTGTTCAAGATCTCACGTGGT 60.289 50.000 17.00 1.87 0.00 4.16
2273 2309 2.733552 CTGTTCAAGATCTCACGTGGTG 59.266 50.000 17.00 9.37 34.45 4.17
2274 2310 2.364002 TGTTCAAGATCTCACGTGGTGA 59.636 45.455 17.00 14.60 40.50 4.02
2281 2317 3.532501 TCACGTGGTGAGCTGTGA 58.467 55.556 17.00 6.27 37.67 3.58
2282 2318 1.363807 TCACGTGGTGAGCTGTGAG 59.636 57.895 17.00 0.00 37.67 3.51
2283 2319 2.029666 ACGTGGTGAGCTGTGAGC 59.970 61.111 0.00 0.00 42.84 4.26
2284 2320 2.740055 CGTGGTGAGCTGTGAGCC 60.740 66.667 0.00 0.00 43.77 4.70
2285 2321 2.746359 GTGGTGAGCTGTGAGCCT 59.254 61.111 0.00 0.00 43.77 4.58
2286 2322 1.670406 GTGGTGAGCTGTGAGCCTG 60.670 63.158 0.00 0.00 43.77 4.85
2287 2323 2.745492 GGTGAGCTGTGAGCCTGC 60.745 66.667 0.00 0.00 43.77 4.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 9.918630 CACCAAATTCTCAAAGTTCATCTAATT 57.081 29.630 0.00 0.00 0.00 1.40
46 47 9.300681 TCACCAAATTCTCAAAGTTCATCTAAT 57.699 29.630 0.00 0.00 0.00 1.73
47 48 8.690203 TCACCAAATTCTCAAAGTTCATCTAA 57.310 30.769 0.00 0.00 0.00 2.10
48 49 8.567948 GTTCACCAAATTCTCAAAGTTCATCTA 58.432 33.333 0.00 0.00 0.00 1.98
49 50 7.068593 TGTTCACCAAATTCTCAAAGTTCATCT 59.931 33.333 0.00 0.00 0.00 2.90
50 51 7.202526 TGTTCACCAAATTCTCAAAGTTCATC 58.797 34.615 0.00 0.00 0.00 2.92
51 52 7.111247 TGTTCACCAAATTCTCAAAGTTCAT 57.889 32.000 0.00 0.00 0.00 2.57
52 53 6.522625 TGTTCACCAAATTCTCAAAGTTCA 57.477 33.333 0.00 0.00 0.00 3.18
53 54 7.826260 TTTGTTCACCAAATTCTCAAAGTTC 57.174 32.000 0.00 0.00 38.12 3.01
83 84 9.781633 TTGAATTCAGAAAATGTTCATCCAATT 57.218 25.926 8.41 0.00 36.09 2.32
84 85 9.953565 ATTGAATTCAGAAAATGTTCATCCAAT 57.046 25.926 8.41 0.00 36.09 3.16
85 86 9.210329 CATTGAATTCAGAAAATGTTCATCCAA 57.790 29.630 8.41 0.00 36.09 3.53
86 87 8.586744 TCATTGAATTCAGAAAATGTTCATCCA 58.413 29.630 8.41 0.00 36.09 3.41
87 88 8.991243 TCATTGAATTCAGAAAATGTTCATCC 57.009 30.769 8.41 0.00 36.09 3.51
89 90 9.767228 TGTTCATTGAATTCAGAAAATGTTCAT 57.233 25.926 8.41 0.00 36.09 2.57
90 91 9.767228 ATGTTCATTGAATTCAGAAAATGTTCA 57.233 25.926 8.41 12.08 36.09 3.18
146 147 9.991388 CACAATTCAAAAATGTCTTCATGTTTT 57.009 25.926 0.00 0.00 38.86 2.43
147 148 9.381033 TCACAATTCAAAAATGTCTTCATGTTT 57.619 25.926 0.00 0.00 40.80 2.83
148 149 8.945481 TCACAATTCAAAAATGTCTTCATGTT 57.055 26.923 0.00 0.00 33.37 2.71
149 150 8.984764 CATCACAATTCAAAAATGTCTTCATGT 58.015 29.630 0.00 0.00 34.19 3.21
150 151 9.198837 TCATCACAATTCAAAAATGTCTTCATG 57.801 29.630 0.00 0.00 34.19 3.07
151 152 9.419297 CTCATCACAATTCAAAAATGTCTTCAT 57.581 29.630 0.00 0.00 35.59 2.57
152 153 7.383029 GCTCATCACAATTCAAAAATGTCTTCA 59.617 33.333 0.00 0.00 0.00 3.02
153 154 7.383029 TGCTCATCACAATTCAAAAATGTCTTC 59.617 33.333 0.00 0.00 0.00 2.87
154 155 7.211573 TGCTCATCACAATTCAAAAATGTCTT 58.788 30.769 0.00 0.00 0.00 3.01
155 156 6.751157 TGCTCATCACAATTCAAAAATGTCT 58.249 32.000 0.00 0.00 0.00 3.41
156 157 7.591006 ATGCTCATCACAATTCAAAAATGTC 57.409 32.000 0.00 0.00 0.00 3.06
157 158 7.972832 AATGCTCATCACAATTCAAAAATGT 57.027 28.000 0.00 0.00 0.00 2.71
158 159 9.672086 AAAAATGCTCATCACAATTCAAAAATG 57.328 25.926 0.00 0.00 0.00 2.32
184 185 9.605275 TGAAAATTGTGTGTCCATCAAATTAAA 57.395 25.926 0.00 0.00 0.00 1.52
185 186 9.039870 GTGAAAATTGTGTGTCCATCAAATTAA 57.960 29.630 0.00 0.00 0.00 1.40
186 187 8.200120 TGTGAAAATTGTGTGTCCATCAAATTA 58.800 29.630 0.00 0.00 0.00 1.40
187 188 7.046652 TGTGAAAATTGTGTGTCCATCAAATT 58.953 30.769 0.00 0.00 0.00 1.82
188 189 6.580788 TGTGAAAATTGTGTGTCCATCAAAT 58.419 32.000 0.00 0.00 0.00 2.32
189 190 5.970592 TGTGAAAATTGTGTGTCCATCAAA 58.029 33.333 0.00 0.00 0.00 2.69
190 191 5.588958 TGTGAAAATTGTGTGTCCATCAA 57.411 34.783 0.00 0.00 0.00 2.57
191 192 5.588958 TTGTGAAAATTGTGTGTCCATCA 57.411 34.783 0.00 0.00 0.00 3.07
192 193 7.481275 AAATTGTGAAAATTGTGTGTCCATC 57.519 32.000 0.00 0.00 0.00 3.51
193 194 7.862512 AAAATTGTGAAAATTGTGTGTCCAT 57.137 28.000 0.00 0.00 0.00 3.41
194 195 7.678947 AAAAATTGTGAAAATTGTGTGTCCA 57.321 28.000 0.00 0.00 0.00 4.02
232 233 9.524496 AACGGAGGGAGTAGTTTTTAAAATTAT 57.476 29.630 0.55 0.00 0.00 1.28
233 234 8.922931 AACGGAGGGAGTAGTTTTTAAAATTA 57.077 30.769 0.55 0.00 0.00 1.40
234 235 7.722728 AGAACGGAGGGAGTAGTTTTTAAAATT 59.277 33.333 0.55 0.00 0.00 1.82
235 236 7.229308 AGAACGGAGGGAGTAGTTTTTAAAAT 58.771 34.615 0.55 0.00 0.00 1.82
236 237 6.594744 AGAACGGAGGGAGTAGTTTTTAAAA 58.405 36.000 0.00 0.00 0.00 1.52
237 238 6.178607 AGAACGGAGGGAGTAGTTTTTAAA 57.821 37.500 0.00 0.00 0.00 1.52
238 239 5.813513 AGAACGGAGGGAGTAGTTTTTAA 57.186 39.130 0.00 0.00 0.00 1.52
239 240 6.916360 TTAGAACGGAGGGAGTAGTTTTTA 57.084 37.500 0.00 0.00 0.00 1.52
240 241 5.813513 TTAGAACGGAGGGAGTAGTTTTT 57.186 39.130 0.00 0.00 0.00 1.94
241 242 5.813513 TTTAGAACGGAGGGAGTAGTTTT 57.186 39.130 0.00 0.00 0.00 2.43
242 243 7.672122 ATATTTAGAACGGAGGGAGTAGTTT 57.328 36.000 0.00 0.00 0.00 2.66
243 244 8.773033 TTATATTTAGAACGGAGGGAGTAGTT 57.227 34.615 0.00 0.00 0.00 2.24
244 245 8.003629 ACTTATATTTAGAACGGAGGGAGTAGT 58.996 37.037 0.00 0.00 0.00 2.73
245 246 8.406730 ACTTATATTTAGAACGGAGGGAGTAG 57.593 38.462 0.00 0.00 0.00 2.57
247 248 8.953223 ATACTTATATTTAGAACGGAGGGAGT 57.047 34.615 0.00 0.00 0.00 3.85
281 282 8.774586 GCTTCGTATGTAGTCATTTATTGGAAT 58.225 33.333 0.00 0.00 35.70 3.01
282 283 7.766738 TGCTTCGTATGTAGTCATTTATTGGAA 59.233 33.333 0.00 0.00 35.70 3.53
283 284 7.269316 TGCTTCGTATGTAGTCATTTATTGGA 58.731 34.615 0.00 0.00 35.70 3.53
284 285 7.477144 TGCTTCGTATGTAGTCATTTATTGG 57.523 36.000 0.00 0.00 35.70 3.16
285 286 9.767684 TTTTGCTTCGTATGTAGTCATTTATTG 57.232 29.630 0.00 0.00 35.70 1.90
287 288 9.935682 CATTTTGCTTCGTATGTAGTCATTTAT 57.064 29.630 0.00 0.00 35.70 1.40
288 289 9.157104 TCATTTTGCTTCGTATGTAGTCATTTA 57.843 29.630 0.00 0.00 35.70 1.40
289 290 8.039603 TCATTTTGCTTCGTATGTAGTCATTT 57.960 30.769 0.00 0.00 35.70 2.32
290 291 7.334421 ACTCATTTTGCTTCGTATGTAGTCATT 59.666 33.333 0.00 0.00 35.70 2.57
291 292 6.818644 ACTCATTTTGCTTCGTATGTAGTCAT 59.181 34.615 0.00 0.00 38.00 3.06
292 293 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
293 294 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
294 295 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
295 296 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
296 297 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
297 298 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
298 299 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
299 300 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
300 301 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
301 302 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
302 303 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
303 304 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
360 361 9.136323 AGTCTTTTTAGACATTTCAAATGGACT 57.864 29.630 14.70 14.18 41.02 3.85
361 362 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
378 379 9.392259 CCTCCGTTCCTAAATATAAGTCTTTTT 57.608 33.333 0.00 0.00 0.00 1.94
379 380 7.991460 CCCTCCGTTCCTAAATATAAGTCTTTT 59.009 37.037 0.00 0.00 0.00 2.27
380 381 7.346436 TCCCTCCGTTCCTAAATATAAGTCTTT 59.654 37.037 0.00 0.00 0.00 2.52
381 382 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
382 383 6.379579 TCCCTCCGTTCCTAAATATAAGTCT 58.620 40.000 0.00 0.00 0.00 3.24
383 384 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
384 385 6.141790 ACTCCCTCCGTTCCTAAATATAAGT 58.858 40.000 0.00 0.00 0.00 2.24
385 386 6.667558 ACTCCCTCCGTTCCTAAATATAAG 57.332 41.667 0.00 0.00 0.00 1.73
386 387 8.175431 AGATACTCCCTCCGTTCCTAAATATAA 58.825 37.037 0.00 0.00 0.00 0.98
387 388 7.614583 CAGATACTCCCTCCGTTCCTAAATATA 59.385 40.741 0.00 0.00 0.00 0.86
388 389 6.437793 CAGATACTCCCTCCGTTCCTAAATAT 59.562 42.308 0.00 0.00 0.00 1.28
389 390 5.773680 CAGATACTCCCTCCGTTCCTAAATA 59.226 44.000 0.00 0.00 0.00 1.40
390 391 4.589374 CAGATACTCCCTCCGTTCCTAAAT 59.411 45.833 0.00 0.00 0.00 1.40
391 392 3.958798 CAGATACTCCCTCCGTTCCTAAA 59.041 47.826 0.00 0.00 0.00 1.85
392 393 3.053095 ACAGATACTCCCTCCGTTCCTAA 60.053 47.826 0.00 0.00 0.00 2.69
393 394 2.512896 ACAGATACTCCCTCCGTTCCTA 59.487 50.000 0.00 0.00 0.00 2.94
394 395 1.288335 ACAGATACTCCCTCCGTTCCT 59.712 52.381 0.00 0.00 0.00 3.36
395 396 1.777941 ACAGATACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
396 397 4.996788 TTAACAGATACTCCCTCCGTTC 57.003 45.455 0.00 0.00 0.00 3.95
397 398 5.396436 CCATTTAACAGATACTCCCTCCGTT 60.396 44.000 0.00 0.00 0.00 4.44
398 399 4.101119 CCATTTAACAGATACTCCCTCCGT 59.899 45.833 0.00 0.00 0.00 4.69
399 400 4.344102 TCCATTTAACAGATACTCCCTCCG 59.656 45.833 0.00 0.00 0.00 4.63
400 401 5.888982 TCCATTTAACAGATACTCCCTCC 57.111 43.478 0.00 0.00 0.00 4.30
401 402 8.753497 ATTTTCCATTTAACAGATACTCCCTC 57.247 34.615 0.00 0.00 0.00 4.30
402 403 9.853177 CTATTTTCCATTTAACAGATACTCCCT 57.147 33.333 0.00 0.00 0.00 4.20
403 404 9.847224 TCTATTTTCCATTTAACAGATACTCCC 57.153 33.333 0.00 0.00 0.00 4.30
406 407 9.853177 CCCTCTATTTTCCATTTAACAGATACT 57.147 33.333 0.00 0.00 0.00 2.12
407 408 9.847224 TCCCTCTATTTTCCATTTAACAGATAC 57.153 33.333 0.00 0.00 0.00 2.24
428 429 9.856488 GTTTGTTTCTAATTTTCCTATTCCCTC 57.144 33.333 0.00 0.00 0.00 4.30
524 525 1.532437 CGAGCAACAGTGAATTGAGCA 59.468 47.619 0.00 0.00 0.00 4.26
530 531 3.262420 GGTATGACGAGCAACAGTGAAT 58.738 45.455 0.00 0.00 0.00 2.57
531 532 2.683968 GGTATGACGAGCAACAGTGAA 58.316 47.619 0.00 0.00 0.00 3.18
532 533 1.402325 CGGTATGACGAGCAACAGTGA 60.402 52.381 0.00 0.00 35.47 3.41
533 534 0.992072 CGGTATGACGAGCAACAGTG 59.008 55.000 0.00 0.00 35.47 3.66
534 535 0.736325 GCGGTATGACGAGCAACAGT 60.736 55.000 0.00 0.00 35.47 3.55
536 537 1.447140 GGCGGTATGACGAGCAACA 60.447 57.895 0.00 0.00 35.47 3.33
569 578 2.268920 GGCTTCTGGACATCGCCA 59.731 61.111 0.00 0.00 40.41 5.69
595 604 5.856126 AAACACACACATACTGGTATTCG 57.144 39.130 0.00 0.00 0.00 3.34
617 626 8.796475 ACTACTACTGGTATTCGTGTCTAAAAA 58.204 33.333 0.00 0.00 0.00 1.94
618 627 8.340618 ACTACTACTGGTATTCGTGTCTAAAA 57.659 34.615 0.00 0.00 0.00 1.52
619 628 7.928307 ACTACTACTGGTATTCGTGTCTAAA 57.072 36.000 0.00 0.00 0.00 1.85
620 629 9.049523 CATACTACTACTGGTATTCGTGTCTAA 57.950 37.037 0.00 0.00 0.00 2.10
621 630 8.206867 ACATACTACTACTGGTATTCGTGTCTA 58.793 37.037 0.00 0.00 0.00 2.59
622 631 7.012138 CACATACTACTACTGGTATTCGTGTCT 59.988 40.741 0.00 0.00 0.00 3.41
623 632 7.130917 CACATACTACTACTGGTATTCGTGTC 58.869 42.308 0.00 0.00 0.00 3.67
624 633 6.600822 ACACATACTACTACTGGTATTCGTGT 59.399 38.462 0.00 0.00 34.11 4.49
625 634 6.910972 CACACATACTACTACTGGTATTCGTG 59.089 42.308 0.00 0.00 32.98 4.35
626 635 6.825213 TCACACATACTACTACTGGTATTCGT 59.175 38.462 0.00 0.00 0.00 3.85
627 636 7.255491 TCACACATACTACTACTGGTATTCG 57.745 40.000 0.00 0.00 0.00 3.34
628 637 7.648510 GCTTCACACATACTACTACTGGTATTC 59.351 40.741 0.00 0.00 0.00 1.75
629 638 7.490000 GCTTCACACATACTACTACTGGTATT 58.510 38.462 0.00 0.00 0.00 1.89
630 639 6.238676 CGCTTCACACATACTACTACTGGTAT 60.239 42.308 0.00 0.00 0.00 2.73
631 640 5.065602 CGCTTCACACATACTACTACTGGTA 59.934 44.000 0.00 0.00 0.00 3.25
632 641 4.142447 CGCTTCACACATACTACTACTGGT 60.142 45.833 0.00 0.00 0.00 4.00
633 642 4.352039 CGCTTCACACATACTACTACTGG 58.648 47.826 0.00 0.00 0.00 4.00
634 643 4.352039 CCGCTTCACACATACTACTACTG 58.648 47.826 0.00 0.00 0.00 2.74
635 644 3.380637 CCCGCTTCACACATACTACTACT 59.619 47.826 0.00 0.00 0.00 2.57
636 645 3.703420 CCCGCTTCACACATACTACTAC 58.297 50.000 0.00 0.00 0.00 2.73
637 646 2.100252 GCCCGCTTCACACATACTACTA 59.900 50.000 0.00 0.00 0.00 1.82
638 647 1.134788 GCCCGCTTCACACATACTACT 60.135 52.381 0.00 0.00 0.00 2.57
639 648 1.287425 GCCCGCTTCACACATACTAC 58.713 55.000 0.00 0.00 0.00 2.73
640 649 0.177141 GGCCCGCTTCACACATACTA 59.823 55.000 0.00 0.00 0.00 1.82
696 707 4.343323 TCACATGGTGGTGGGCCG 62.343 66.667 0.00 0.00 39.27 6.13
760 771 9.959721 AAATTCTAGCCTCTATCTAGTCTCTAG 57.040 37.037 0.00 0.00 36.00 2.43
814 827 8.259411 TCTTGTTCGTACTTCTAGTCTCTATCT 58.741 37.037 0.00 0.00 0.00 1.98
848 864 0.955428 ACTTACCCGTCTCGTGCGTA 60.955 55.000 0.00 0.00 0.00 4.42
892 908 2.363925 GGGGTGGAGCCGTCTAGT 60.364 66.667 0.00 0.00 38.44 2.57
913 929 1.029681 GGCTCGAGGTTGTTTTGGTT 58.970 50.000 15.58 0.00 0.00 3.67
939 955 4.736896 GTCTCCGTGGACGTGGGC 62.737 72.222 0.00 0.00 37.74 5.36
1037 1053 1.152525 GGCAGGACCCCGAGATCTA 60.153 63.158 0.00 0.00 0.00 1.98
1041 1057 2.279073 CTAGGCAGGACCCCGAGA 59.721 66.667 0.00 0.00 40.58 4.04
1049 1065 3.085947 CCAGCTGGCTAGGCAGGA 61.086 66.667 38.24 11.23 38.40 3.86
1287 1303 3.827302 GTCGGTATGAGTATGACCCTCAT 59.173 47.826 7.90 7.90 42.68 2.90
1339 1355 8.599774 GCTAACCGTACATAGTATAGCTAGTAC 58.400 40.741 0.00 4.28 34.57 2.73
1340 1356 7.766278 GGCTAACCGTACATAGTATAGCTAGTA 59.234 40.741 0.00 0.00 35.72 1.82
1341 1357 6.597280 GGCTAACCGTACATAGTATAGCTAGT 59.403 42.308 0.00 0.00 35.72 2.57
1342 1358 6.822676 AGGCTAACCGTACATAGTATAGCTAG 59.177 42.308 0.00 0.00 42.76 3.42
1343 1359 6.715280 AGGCTAACCGTACATAGTATAGCTA 58.285 40.000 0.00 0.00 42.76 3.32
1344 1360 5.568392 AGGCTAACCGTACATAGTATAGCT 58.432 41.667 0.00 0.00 42.76 3.32
1345 1361 5.893897 AGGCTAACCGTACATAGTATAGC 57.106 43.478 0.00 0.00 42.76 2.97
1346 1362 7.020010 CGAAAGGCTAACCGTACATAGTATAG 58.980 42.308 0.00 0.00 42.76 1.31
1347 1363 6.710295 TCGAAAGGCTAACCGTACATAGTATA 59.290 38.462 0.00 0.00 42.76 1.47
1348 1364 5.532406 TCGAAAGGCTAACCGTACATAGTAT 59.468 40.000 0.00 0.00 42.76 2.12
1349 1365 4.881273 TCGAAAGGCTAACCGTACATAGTA 59.119 41.667 0.00 0.00 42.76 1.82
1383 1399 2.286595 CGTATGATGAACACAGCATGGC 60.287 50.000 10.50 3.90 43.62 4.40
1407 1429 5.164620 TGTCTTATGTCTTGGCAGAATCA 57.835 39.130 0.00 0.00 0.00 2.57
1526 1557 4.517952 TCGCAAAACATCACAATTCCAT 57.482 36.364 0.00 0.00 0.00 3.41
1569 1600 1.256284 CTCATCGATCGTCGTCGTGC 61.256 60.000 15.94 0.00 41.35 5.34
1608 1639 4.767255 CCCAGAGCGCCTGTCACC 62.767 72.222 19.93 0.00 41.33 4.02
1614 1645 3.160047 CAGATCCCCAGAGCGCCT 61.160 66.667 2.29 0.00 32.16 5.52
1615 1646 3.453070 GACAGATCCCCAGAGCGCC 62.453 68.421 2.29 0.00 32.16 6.53
1621 1653 3.144120 CTCGCCGACAGATCCCCAG 62.144 68.421 0.00 0.00 0.00 4.45
1666 1698 7.225538 AGAGATATTTTCCACAATCGATGTCAC 59.774 37.037 0.00 0.00 41.46 3.67
1671 1703 8.511604 AAACAGAGATATTTTCCACAATCGAT 57.488 30.769 0.00 0.00 0.00 3.59
1674 1706 8.950210 TGAGAAACAGAGATATTTTCCACAATC 58.050 33.333 0.00 0.00 30.82 2.67
1678 1710 8.498054 TGATGAGAAACAGAGATATTTTCCAC 57.502 34.615 0.00 0.00 30.82 4.02
1693 1729 2.691409 TGACCGGGATGATGAGAAAC 57.309 50.000 6.32 0.00 0.00 2.78
1820 1856 2.908073 GCAACTCCACAACCGCCTG 61.908 63.158 0.00 0.00 0.00 4.85
1864 1900 3.380637 CCGCTAGAGTTGCTCTAACCTTA 59.619 47.826 7.22 0.00 41.74 2.69
1885 1921 0.539986 TGGAGCCCTACAACGATTCC 59.460 55.000 0.00 0.00 0.00 3.01
1888 1924 1.134098 CCATTGGAGCCCTACAACGAT 60.134 52.381 0.00 0.00 36.02 3.73
1929 1965 4.803426 CTGGACGCTGCCCGAGTC 62.803 72.222 0.61 0.01 41.14 3.36
1931 1967 3.781770 GATCTGGACGCTGCCCGAG 62.782 68.421 0.61 0.00 41.02 4.63
1932 1968 3.838271 GATCTGGACGCTGCCCGA 61.838 66.667 0.61 0.00 41.02 5.14
1933 1969 4.899239 GGATCTGGACGCTGCCCG 62.899 72.222 0.00 0.00 44.21 6.13
1934 1970 4.899239 CGGATCTGGACGCTGCCC 62.899 72.222 0.00 0.00 0.00 5.36
1935 1971 1.806461 TATCGGATCTGGACGCTGCC 61.806 60.000 0.62 0.00 0.00 4.85
1936 1972 0.032130 TTATCGGATCTGGACGCTGC 59.968 55.000 0.62 0.00 0.00 5.25
1937 1973 2.230025 AGATTATCGGATCTGGACGCTG 59.770 50.000 0.62 0.00 35.13 5.18
1938 1974 2.490115 GAGATTATCGGATCTGGACGCT 59.510 50.000 0.62 0.00 36.54 5.07
1939 1975 2.869897 GAGATTATCGGATCTGGACGC 58.130 52.381 0.62 0.00 36.54 5.19
1960 1996 2.583593 GCGTGGATCGAGGCTGTC 60.584 66.667 14.24 0.00 42.86 3.51
1961 1997 3.381983 TGCGTGGATCGAGGCTGT 61.382 61.111 20.63 0.00 42.86 4.40
1962 1998 2.887568 GTGCGTGGATCGAGGCTG 60.888 66.667 20.63 0.00 42.86 4.85
1963 1999 4.148825 GGTGCGTGGATCGAGGCT 62.149 66.667 20.63 0.00 42.86 4.58
1965 2001 3.432051 GAGGGTGCGTGGATCGAGG 62.432 68.421 0.00 0.00 42.86 4.63
1966 2002 2.105128 GAGGGTGCGTGGATCGAG 59.895 66.667 0.00 0.00 42.86 4.04
1967 2003 3.458163 GGAGGGTGCGTGGATCGA 61.458 66.667 0.00 0.00 42.86 3.59
1968 2004 4.530857 GGGAGGGTGCGTGGATCG 62.531 72.222 0.00 0.00 43.12 3.69
1969 2005 4.176752 GGGGAGGGTGCGTGGATC 62.177 72.222 0.00 0.00 0.00 3.36
1970 2006 4.741239 AGGGGAGGGTGCGTGGAT 62.741 66.667 0.00 0.00 0.00 3.41
2009 2045 4.308458 TCACGTGGACAAGCCCGG 62.308 66.667 17.00 0.00 35.47 5.73
2010 2046 3.041940 GTCACGTGGACAAGCCCG 61.042 66.667 17.00 0.00 46.19 6.13
2043 2079 3.334054 AGCAACAGGGAGGGAGCC 61.334 66.667 0.00 0.00 0.00 4.70
2044 2080 1.919600 ATCAGCAACAGGGAGGGAGC 61.920 60.000 0.00 0.00 0.00 4.70
2045 2081 0.179936 GATCAGCAACAGGGAGGGAG 59.820 60.000 0.00 0.00 0.00 4.30
2046 2082 0.547471 TGATCAGCAACAGGGAGGGA 60.547 55.000 0.00 0.00 0.00 4.20
2047 2083 0.107312 CTGATCAGCAACAGGGAGGG 60.107 60.000 10.38 0.00 0.00 4.30
2048 2084 0.107312 CCTGATCAGCAACAGGGAGG 60.107 60.000 17.76 0.00 46.76 4.30
2049 2085 3.473147 CCTGATCAGCAACAGGGAG 57.527 57.895 17.76 0.00 46.76 4.30
2053 2089 1.534163 CACACACCTGATCAGCAACAG 59.466 52.381 17.76 5.80 0.00 3.16
2054 2090 1.134128 ACACACACCTGATCAGCAACA 60.134 47.619 17.76 0.00 0.00 3.33
2055 2091 1.265095 CACACACACCTGATCAGCAAC 59.735 52.381 17.76 0.00 0.00 4.17
2056 2092 1.596603 CACACACACCTGATCAGCAA 58.403 50.000 17.76 0.00 0.00 3.91
2057 2093 0.250424 CCACACACACCTGATCAGCA 60.250 55.000 17.76 0.00 0.00 4.41
2058 2094 0.250467 ACCACACACACCTGATCAGC 60.250 55.000 17.76 0.00 0.00 4.26
2059 2095 1.202687 ACACCACACACACCTGATCAG 60.203 52.381 16.24 16.24 0.00 2.90
2060 2096 0.836606 ACACCACACACACCTGATCA 59.163 50.000 0.00 0.00 0.00 2.92
2061 2097 1.603802 CAACACCACACACACCTGATC 59.396 52.381 0.00 0.00 0.00 2.92
2062 2098 1.064758 ACAACACCACACACACCTGAT 60.065 47.619 0.00 0.00 0.00 2.90
2063 2099 0.326595 ACAACACCACACACACCTGA 59.673 50.000 0.00 0.00 0.00 3.86
2064 2100 0.451383 CACAACACCACACACACCTG 59.549 55.000 0.00 0.00 0.00 4.00
2065 2101 0.326595 TCACAACACCACACACACCT 59.673 50.000 0.00 0.00 0.00 4.00
2066 2102 1.065401 CATCACAACACCACACACACC 59.935 52.381 0.00 0.00 0.00 4.16
2067 2103 1.065401 CCATCACAACACCACACACAC 59.935 52.381 0.00 0.00 0.00 3.82
2068 2104 1.387539 CCATCACAACACCACACACA 58.612 50.000 0.00 0.00 0.00 3.72
2069 2105 0.030638 GCCATCACAACACCACACAC 59.969 55.000 0.00 0.00 0.00 3.82
2070 2106 0.394899 TGCCATCACAACACCACACA 60.395 50.000 0.00 0.00 0.00 3.72
2071 2107 0.743688 TTGCCATCACAACACCACAC 59.256 50.000 0.00 0.00 0.00 3.82
2072 2108 3.197664 TTGCCATCACAACACCACA 57.802 47.368 0.00 0.00 0.00 4.17
2078 2114 0.664166 CAAGCCGTTGCCATCACAAC 60.664 55.000 0.00 0.00 45.19 3.32
2079 2115 1.659233 CAAGCCGTTGCCATCACAA 59.341 52.632 0.00 0.00 38.69 3.33
2080 2116 3.353600 CAAGCCGTTGCCATCACA 58.646 55.556 0.00 0.00 38.69 3.58
2088 2124 2.179018 CATTCCCGCAAGCCGTTG 59.821 61.111 0.00 0.00 36.67 4.10
2089 2125 2.837031 ATCCATTCCCGCAAGCCGTT 62.837 55.000 0.00 0.00 34.38 4.44
2090 2126 3.344137 ATCCATTCCCGCAAGCCGT 62.344 57.895 0.00 0.00 34.38 5.68
2091 2127 2.516930 ATCCATTCCCGCAAGCCG 60.517 61.111 0.00 0.00 0.00 5.52
2092 2128 1.754234 ACATCCATTCCCGCAAGCC 60.754 57.895 0.00 0.00 0.00 4.35
2093 2129 1.434696 CACATCCATTCCCGCAAGC 59.565 57.895 0.00 0.00 0.00 4.01
2094 2130 0.680921 ACCACATCCATTCCCGCAAG 60.681 55.000 0.00 0.00 0.00 4.01
2095 2131 0.251564 AACCACATCCATTCCCGCAA 60.252 50.000 0.00 0.00 0.00 4.85
2096 2132 0.964860 CAACCACATCCATTCCCGCA 60.965 55.000 0.00 0.00 0.00 5.69
2097 2133 0.679640 TCAACCACATCCATTCCCGC 60.680 55.000 0.00 0.00 0.00 6.13
2098 2134 1.745087 CTTCAACCACATCCATTCCCG 59.255 52.381 0.00 0.00 0.00 5.14
2099 2135 1.478105 GCTTCAACCACATCCATTCCC 59.522 52.381 0.00 0.00 0.00 3.97
2100 2136 2.165030 CTGCTTCAACCACATCCATTCC 59.835 50.000 0.00 0.00 0.00 3.01
2101 2137 2.416431 GCTGCTTCAACCACATCCATTC 60.416 50.000 0.00 0.00 0.00 2.67
2102 2138 1.547372 GCTGCTTCAACCACATCCATT 59.453 47.619 0.00 0.00 0.00 3.16
2103 2139 1.180029 GCTGCTTCAACCACATCCAT 58.820 50.000 0.00 0.00 0.00 3.41
2104 2140 1.236616 CGCTGCTTCAACCACATCCA 61.237 55.000 0.00 0.00 0.00 3.41
2105 2141 1.503542 CGCTGCTTCAACCACATCC 59.496 57.895 0.00 0.00 0.00 3.51
2106 2142 1.503542 CCGCTGCTTCAACCACATC 59.496 57.895 0.00 0.00 0.00 3.06
2107 2143 2.629656 GCCGCTGCTTCAACCACAT 61.630 57.895 0.00 0.00 33.53 3.21
2108 2144 3.286751 GCCGCTGCTTCAACCACA 61.287 61.111 0.00 0.00 33.53 4.17
2109 2145 4.389576 CGCCGCTGCTTCAACCAC 62.390 66.667 0.00 0.00 34.43 4.16
2130 2166 4.504916 CTCGGTGCTCGGAGGCTG 62.505 72.222 13.79 0.00 39.77 4.85
2131 2167 4.742649 TCTCGGTGCTCGGAGGCT 62.743 66.667 19.37 0.00 40.11 4.58
2132 2168 4.200283 CTCTCGGTGCTCGGAGGC 62.200 72.222 19.37 0.00 40.11 4.70
2133 2169 4.200283 GCTCTCGGTGCTCGGAGG 62.200 72.222 19.37 12.81 40.11 4.30
2134 2170 3.443925 TGCTCTCGGTGCTCGGAG 61.444 66.667 15.07 15.07 40.74 4.63
2135 2171 3.749064 GTGCTCTCGGTGCTCGGA 61.749 66.667 0.70 0.00 39.77 4.55
2137 2173 4.103103 TCGTGCTCTCGGTGCTCG 62.103 66.667 12.75 12.75 45.07 5.03
2138 2174 2.505118 GTCGTGCTCTCGGTGCTC 60.505 66.667 0.00 0.00 0.00 4.26
2139 2175 2.983930 GAGTCGTGCTCTCGGTGCT 61.984 63.158 3.24 0.00 40.98 4.40
2140 2176 2.505118 GAGTCGTGCTCTCGGTGC 60.505 66.667 3.24 0.00 40.98 5.01
2141 2177 2.179517 GGAGTCGTGCTCTCGGTG 59.820 66.667 8.98 0.00 43.62 4.94
2142 2178 3.063084 GGGAGTCGTGCTCTCGGT 61.063 66.667 8.98 0.00 43.62 4.69
2143 2179 3.827898 GGGGAGTCGTGCTCTCGG 61.828 72.222 8.98 0.00 45.69 4.63
2144 2180 3.827898 GGGGGAGTCGTGCTCTCG 61.828 72.222 8.98 0.00 45.69 4.04
2145 2181 2.363147 AGGGGGAGTCGTGCTCTC 60.363 66.667 8.98 5.63 44.01 3.20
2146 2182 2.363147 GAGGGGGAGTCGTGCTCT 60.363 66.667 8.98 0.00 43.62 4.09
2147 2183 1.950973 GAAGAGGGGGAGTCGTGCTC 61.951 65.000 2.04 2.04 43.39 4.26
2148 2184 1.985116 GAAGAGGGGGAGTCGTGCT 60.985 63.158 0.00 0.00 0.00 4.40
2149 2185 1.985116 AGAAGAGGGGGAGTCGTGC 60.985 63.158 0.00 0.00 0.00 5.34
2150 2186 0.612174 TCAGAAGAGGGGGAGTCGTG 60.612 60.000 0.00 0.00 0.00 4.35
2151 2187 0.336737 ATCAGAAGAGGGGGAGTCGT 59.663 55.000 0.00 0.00 0.00 4.34
2152 2188 1.137872 CAATCAGAAGAGGGGGAGTCG 59.862 57.143 0.00 0.00 0.00 4.18
2153 2189 1.134250 GCAATCAGAAGAGGGGGAGTC 60.134 57.143 0.00 0.00 0.00 3.36
2154 2190 0.915364 GCAATCAGAAGAGGGGGAGT 59.085 55.000 0.00 0.00 0.00 3.85
2155 2191 0.179062 CGCAATCAGAAGAGGGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
2156 2192 0.909610 ACGCAATCAGAAGAGGGGGA 60.910 55.000 0.00 0.00 0.00 4.81
2157 2193 0.462759 GACGCAATCAGAAGAGGGGG 60.463 60.000 0.00 0.00 0.00 5.40
2158 2194 0.250234 TGACGCAATCAGAAGAGGGG 59.750 55.000 0.00 0.00 31.91 4.79
2159 2195 3.840831 TGACGCAATCAGAAGAGGG 57.159 52.632 0.00 0.00 31.91 4.30
2173 2209 0.301687 GCAACATGGCGATACTGACG 59.698 55.000 0.00 0.00 0.00 4.35
2197 2233 0.392998 TTCCCTCCTTCGCTTGATGC 60.393 55.000 0.00 0.00 38.57 3.91
2198 2234 2.012673 CTTTCCCTCCTTCGCTTGATG 58.987 52.381 0.00 0.00 0.00 3.07
2199 2235 1.065126 CCTTTCCCTCCTTCGCTTGAT 60.065 52.381 0.00 0.00 0.00 2.57
2200 2236 0.324943 CCTTTCCCTCCTTCGCTTGA 59.675 55.000 0.00 0.00 0.00 3.02
2201 2237 0.324943 TCCTTTCCCTCCTTCGCTTG 59.675 55.000 0.00 0.00 0.00 4.01
2202 2238 0.325272 GTCCTTTCCCTCCTTCGCTT 59.675 55.000 0.00 0.00 0.00 4.68
2203 2239 1.554583 GGTCCTTTCCCTCCTTCGCT 61.555 60.000 0.00 0.00 0.00 4.93
2204 2240 1.078356 GGTCCTTTCCCTCCTTCGC 60.078 63.158 0.00 0.00 0.00 4.70
2205 2241 0.690762 TTGGTCCTTTCCCTCCTTCG 59.309 55.000 0.00 0.00 0.00 3.79
2206 2242 1.423921 TGTTGGTCCTTTCCCTCCTTC 59.576 52.381 0.00 0.00 0.00 3.46
2207 2243 1.529744 TGTTGGTCCTTTCCCTCCTT 58.470 50.000 0.00 0.00 0.00 3.36
2208 2244 1.636003 GATGTTGGTCCTTTCCCTCCT 59.364 52.381 0.00 0.00 0.00 3.69
2209 2245 1.636003 AGATGTTGGTCCTTTCCCTCC 59.364 52.381 0.00 0.00 0.00 4.30
2210 2246 2.716217 CAGATGTTGGTCCTTTCCCTC 58.284 52.381 0.00 0.00 0.00 4.30
2211 2247 1.272147 GCAGATGTTGGTCCTTTCCCT 60.272 52.381 0.00 0.00 0.00 4.20
2212 2248 1.177401 GCAGATGTTGGTCCTTTCCC 58.823 55.000 0.00 0.00 0.00 3.97
2213 2249 1.177401 GGCAGATGTTGGTCCTTTCC 58.823 55.000 0.00 0.00 0.00 3.13
2214 2250 1.909700 TGGCAGATGTTGGTCCTTTC 58.090 50.000 0.00 0.00 0.00 2.62
2215 2251 2.173519 CATGGCAGATGTTGGTCCTTT 58.826 47.619 0.00 0.00 0.00 3.11
2216 2252 1.355381 TCATGGCAGATGTTGGTCCTT 59.645 47.619 0.00 0.00 0.00 3.36
2217 2253 0.994247 TCATGGCAGATGTTGGTCCT 59.006 50.000 0.00 0.00 0.00 3.85
2218 2254 1.098050 GTCATGGCAGATGTTGGTCC 58.902 55.000 0.00 0.00 0.00 4.46
2219 2255 1.098050 GGTCATGGCAGATGTTGGTC 58.902 55.000 0.00 0.00 0.00 4.02
2220 2256 0.323725 GGGTCATGGCAGATGTTGGT 60.324 55.000 0.00 0.00 0.00 3.67
2221 2257 0.033796 AGGGTCATGGCAGATGTTGG 60.034 55.000 0.00 0.00 0.00 3.77
2222 2258 2.292267 GTAGGGTCATGGCAGATGTTG 58.708 52.381 0.00 0.00 0.00 3.33
2223 2259 1.134401 CGTAGGGTCATGGCAGATGTT 60.134 52.381 0.00 0.00 0.00 2.71
2224 2260 0.465705 CGTAGGGTCATGGCAGATGT 59.534 55.000 0.00 0.00 0.00 3.06
2225 2261 0.465705 ACGTAGGGTCATGGCAGATG 59.534 55.000 0.00 0.00 0.00 2.90
2226 2262 0.465705 CACGTAGGGTCATGGCAGAT 59.534 55.000 0.00 0.00 0.00 2.90
2227 2263 1.613317 CCACGTAGGGTCATGGCAGA 61.613 60.000 0.00 0.00 0.00 4.26
2228 2264 1.153369 CCACGTAGGGTCATGGCAG 60.153 63.158 0.00 0.00 0.00 4.85
2229 2265 1.916273 ACCACGTAGGGTCATGGCA 60.916 57.895 0.00 0.00 43.89 4.92
2230 2266 1.449601 CACCACGTAGGGTCATGGC 60.450 63.158 8.57 0.00 43.89 4.40
2231 2267 0.175760 CTCACCACGTAGGGTCATGG 59.824 60.000 8.57 0.00 43.89 3.66
2232 2268 0.460284 GCTCACCACGTAGGGTCATG 60.460 60.000 8.57 0.00 43.89 3.07
2233 2269 1.614241 GGCTCACCACGTAGGGTCAT 61.614 60.000 8.57 0.00 43.89 3.06
2234 2270 2.280552 GGCTCACCACGTAGGGTCA 61.281 63.158 8.57 0.00 43.89 4.02
2235 2271 1.982938 AGGCTCACCACGTAGGGTC 60.983 63.158 8.57 0.00 43.89 4.46
2236 2272 2.119832 AGGCTCACCACGTAGGGT 59.880 61.111 8.57 0.49 43.89 4.34
2237 2273 1.827399 AACAGGCTCACCACGTAGGG 61.827 60.000 8.57 0.00 43.89 3.53
2238 2274 0.389948 GAACAGGCTCACCACGTAGG 60.390 60.000 0.00 0.00 45.67 3.18
2239 2275 0.317160 TGAACAGGCTCACCACGTAG 59.683 55.000 0.00 0.00 39.06 3.51
2240 2276 0.753867 TTGAACAGGCTCACCACGTA 59.246 50.000 0.00 0.00 39.06 3.57
2241 2277 0.532862 CTTGAACAGGCTCACCACGT 60.533 55.000 0.00 0.00 39.06 4.49
2242 2278 0.249868 TCTTGAACAGGCTCACCACG 60.250 55.000 0.00 0.00 39.06 4.94
2243 2279 2.079925 GATCTTGAACAGGCTCACCAC 58.920 52.381 0.00 0.00 39.06 4.16
2244 2280 1.980765 AGATCTTGAACAGGCTCACCA 59.019 47.619 0.00 0.00 39.06 4.17
2245 2281 2.027745 TGAGATCTTGAACAGGCTCACC 60.028 50.000 0.00 0.00 32.59 4.02
2246 2282 2.999355 GTGAGATCTTGAACAGGCTCAC 59.001 50.000 0.00 0.00 42.68 3.51
2247 2283 2.353109 CGTGAGATCTTGAACAGGCTCA 60.353 50.000 0.00 0.00 34.13 4.26
2248 2284 2.266554 CGTGAGATCTTGAACAGGCTC 58.733 52.381 0.00 0.00 0.00 4.70
2249 2285 1.620819 ACGTGAGATCTTGAACAGGCT 59.379 47.619 0.00 0.00 0.00 4.58
2250 2286 1.728971 CACGTGAGATCTTGAACAGGC 59.271 52.381 10.90 0.00 0.00 4.85
2251 2287 2.289072 ACCACGTGAGATCTTGAACAGG 60.289 50.000 19.30 0.00 0.00 4.00
2252 2288 2.733552 CACCACGTGAGATCTTGAACAG 59.266 50.000 19.30 0.00 35.23 3.16
2253 2289 2.364002 TCACCACGTGAGATCTTGAACA 59.636 45.455 19.30 0.00 37.67 3.18
2254 2290 3.026630 TCACCACGTGAGATCTTGAAC 57.973 47.619 19.30 0.00 37.67 3.18
2264 2300 1.363807 CTCACAGCTCACCACGTGA 59.636 57.895 19.30 0.00 40.50 4.35
2265 2301 2.313172 GCTCACAGCTCACCACGTG 61.313 63.158 9.08 9.08 38.45 4.49
2266 2302 2.029666 GCTCACAGCTCACCACGT 59.970 61.111 0.00 0.00 38.45 4.49
2267 2303 2.740055 GGCTCACAGCTCACCACG 60.740 66.667 0.00 0.00 41.99 4.94
2268 2304 1.670406 CAGGCTCACAGCTCACCAC 60.670 63.158 0.00 0.00 41.99 4.16
2269 2305 2.745698 CAGGCTCACAGCTCACCA 59.254 61.111 0.00 0.00 41.99 4.17
2270 2306 2.745492 GCAGGCTCACAGCTCACC 60.745 66.667 0.00 0.00 41.99 4.02
2271 2307 2.346739 AGCAGGCTCACAGCTCAC 59.653 61.111 0.00 0.00 41.99 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.