Multiple sequence alignment - TraesCS4A01G123200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G123200 chr4A 100.000 3967 0 0 1 3967 154353577 154357543 0.000000e+00 7326.0
1 TraesCS4A01G123200 chr4B 94.762 2329 71 14 753 3061 397010776 397008479 0.000000e+00 3578.0
2 TraesCS4A01G123200 chr4B 89.091 660 55 6 1 645 397014832 397014175 0.000000e+00 804.0
3 TraesCS4A01G123200 chr4B 96.875 32 0 1 2448 2479 397009139 397009109 7.000000e-03 52.8
4 TraesCS4A01G123200 chr4D 96.648 1462 30 6 756 2210 319328824 319327375 0.000000e+00 2410.0
5 TraesCS4A01G123200 chr4D 88.960 779 66 9 1 761 319334353 319333577 0.000000e+00 944.0
6 TraesCS4A01G123200 chr4D 96.275 349 9 3 2723 3069 319320304 319319958 1.600000e-158 569.0
7 TraesCS4A01G123200 chr4D 95.130 308 6 4 2428 2735 319320663 319320365 9.970000e-131 477.0
8 TraesCS4A01G123200 chr4D 93.820 178 10 1 2206 2383 319322198 319322022 2.350000e-67 267.0
9 TraesCS4A01G123200 chr4D 96.875 32 0 1 2448 2479 319320697 319320667 7.000000e-03 52.8
10 TraesCS4A01G123200 chr3B 89.349 1521 104 39 808 2301 260842023 260843512 0.000000e+00 1858.0
11 TraesCS4A01G123200 chr3B 78.102 1096 198 29 1049 2132 226004772 226003707 0.000000e+00 656.0
12 TraesCS4A01G123200 chr3B 81.982 444 48 21 2256 2683 260843666 260844093 8.160000e-92 348.0
13 TraesCS4A01G123200 chr3B 97.222 36 1 0 2255 2290 323374087 323374052 1.190000e-05 62.1
14 TraesCS4A01G123200 chr5A 97.433 896 23 0 3072 3967 17519473 17518578 0.000000e+00 1528.0
15 TraesCS4A01G123200 chr6A 96.987 896 25 2 3072 3967 572205269 572204376 0.000000e+00 1504.0
16 TraesCS4A01G123200 chr7D 96.760 895 27 2 3072 3965 617969812 617968919 0.000000e+00 1491.0
17 TraesCS4A01G123200 chr7D 96.745 891 27 2 3076 3965 589454296 589455185 0.000000e+00 1483.0
18 TraesCS4A01G123200 chr2D 96.548 898 29 2 3069 3965 394097233 394098129 0.000000e+00 1485.0
19 TraesCS4A01G123200 chr2D 96.425 895 28 4 3072 3965 23546702 23545811 0.000000e+00 1472.0
20 TraesCS4A01G123200 chr3D 90.501 1137 82 14 1179 2301 182334349 182335473 0.000000e+00 1478.0
21 TraesCS4A01G123200 chr3D 96.425 895 29 3 3072 3965 577540424 577539532 0.000000e+00 1472.0
22 TraesCS4A01G123200 chr3D 96.313 895 29 4 3071 3965 91636260 91637150 0.000000e+00 1467.0
23 TraesCS4A01G123200 chr3D 82.827 856 112 22 958 1791 182320108 182320950 0.000000e+00 734.0
24 TraesCS4A01G123200 chr3D 77.283 876 152 28 1062 1923 155675007 155675849 4.640000e-129 472.0
25 TraesCS4A01G123200 chr3D 82.164 342 36 18 2256 2586 182335612 182335939 1.820000e-68 270.0
26 TraesCS4A01G123200 chr7A 96.317 896 32 1 3072 3967 732191948 732192842 0.000000e+00 1471.0
27 TraesCS4A01G123200 chr7A 79.487 195 35 4 325 514 129706260 129706066 2.490000e-27 134.0
28 TraesCS4A01G123200 chr3A 77.657 1101 191 31 1046 2132 174542448 174543507 1.570000e-173 619.0
29 TraesCS4A01G123200 chr7B 81.553 103 15 4 292 392 496781061 496780961 9.140000e-12 82.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G123200 chr4A 154353577 154357543 3966 False 7326.00 7326 100.0000 1 3967 1 chr4A.!!$F1 3966
1 TraesCS4A01G123200 chr4B 397008479 397010776 2297 True 1815.40 3578 95.8185 753 3061 2 chr4B.!!$R2 2308
2 TraesCS4A01G123200 chr4B 397014175 397014832 657 True 804.00 804 89.0910 1 645 1 chr4B.!!$R1 644
3 TraesCS4A01G123200 chr4D 319327375 319328824 1449 True 2410.00 2410 96.6480 756 2210 1 chr4D.!!$R1 1454
4 TraesCS4A01G123200 chr4D 319333577 319334353 776 True 944.00 944 88.9600 1 761 1 chr4D.!!$R2 760
5 TraesCS4A01G123200 chr4D 319319958 319322198 2240 True 341.45 569 95.5250 2206 3069 4 chr4D.!!$R3 863
6 TraesCS4A01G123200 chr3B 260842023 260844093 2070 False 1103.00 1858 85.6655 808 2683 2 chr3B.!!$F1 1875
7 TraesCS4A01G123200 chr3B 226003707 226004772 1065 True 656.00 656 78.1020 1049 2132 1 chr3B.!!$R1 1083
8 TraesCS4A01G123200 chr5A 17518578 17519473 895 True 1528.00 1528 97.4330 3072 3967 1 chr5A.!!$R1 895
9 TraesCS4A01G123200 chr6A 572204376 572205269 893 True 1504.00 1504 96.9870 3072 3967 1 chr6A.!!$R1 895
10 TraesCS4A01G123200 chr7D 617968919 617969812 893 True 1491.00 1491 96.7600 3072 3965 1 chr7D.!!$R1 893
11 TraesCS4A01G123200 chr7D 589454296 589455185 889 False 1483.00 1483 96.7450 3076 3965 1 chr7D.!!$F1 889
12 TraesCS4A01G123200 chr2D 394097233 394098129 896 False 1485.00 1485 96.5480 3069 3965 1 chr2D.!!$F1 896
13 TraesCS4A01G123200 chr2D 23545811 23546702 891 True 1472.00 1472 96.4250 3072 3965 1 chr2D.!!$R1 893
14 TraesCS4A01G123200 chr3D 577539532 577540424 892 True 1472.00 1472 96.4250 3072 3965 1 chr3D.!!$R1 893
15 TraesCS4A01G123200 chr3D 91636260 91637150 890 False 1467.00 1467 96.3130 3071 3965 1 chr3D.!!$F1 894
16 TraesCS4A01G123200 chr3D 182334349 182335939 1590 False 874.00 1478 86.3325 1179 2586 2 chr3D.!!$F4 1407
17 TraesCS4A01G123200 chr3D 182320108 182320950 842 False 734.00 734 82.8270 958 1791 1 chr3D.!!$F3 833
18 TraesCS4A01G123200 chr3D 155675007 155675849 842 False 472.00 472 77.2830 1062 1923 1 chr3D.!!$F2 861
19 TraesCS4A01G123200 chr7A 732191948 732192842 894 False 1471.00 1471 96.3170 3072 3967 1 chr7A.!!$F1 895
20 TraesCS4A01G123200 chr3A 174542448 174543507 1059 False 619.00 619 77.6570 1046 2132 1 chr3A.!!$F1 1086

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
417 429 0.041833 TGGGAGGAGGTTGAGAGGAG 59.958 60.0 0.0 0.0 0.00 3.69 F
575 587 0.250684 TCTTGCATCCAACGGCTGAA 60.251 50.0 0.0 0.0 0.00 3.02 F
577 589 0.313672 TTGCATCCAACGGCTGAAAC 59.686 50.0 0.0 0.0 0.00 2.78 F
579 591 0.313672 GCATCCAACGGCTGAAACAA 59.686 50.0 0.0 0.0 0.00 2.83 F
715 727 0.324091 GAACGTCCCCTCCAGGTCTA 60.324 60.0 0.0 0.0 0.00 2.59 F
2420 4098 0.035439 TGAGGATCGGTTTTGCTCCC 60.035 55.0 0.0 0.0 38.61 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2413 4091 0.110295 TAAGCACTGCAAGGGAGCAA 59.890 50.0 3.30 0.00 43.23 3.91 R
2417 4095 0.609131 GCCTTAAGCACTGCAAGGGA 60.609 55.0 17.64 0.00 43.23 4.20 R
2419 4097 0.895100 TGGCCTTAAGCACTGCAAGG 60.895 55.0 13.53 13.53 46.50 3.61 R
2420 4098 1.180029 ATGGCCTTAAGCACTGCAAG 58.820 50.0 3.32 0.00 46.50 4.01 R
2426 4124 3.198872 GACACTCTATGGCCTTAAGCAC 58.801 50.0 3.32 0.00 46.50 4.40 R
3927 5732 0.976641 AACTGAGGGCGTTCAGATCA 59.023 50.0 20.24 0.00 45.95 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 74 2.486472 CAACTCATGCTCTGTTCCCT 57.514 50.000 0.00 0.00 0.00 4.20
87 88 6.407525 GCTCTGTTCCCTGAGTTCACTATAAT 60.408 42.308 0.00 0.00 38.52 1.28
104 105 6.003950 ACTATAATGTGTTCATATGTGGCCC 58.996 40.000 0.00 0.00 33.49 5.80
112 113 3.017048 TCATATGTGGCCCAGAAAAGG 57.983 47.619 0.00 0.00 0.00 3.11
124 125 4.895297 GCCCAGAAAAGGAATTGGATGATA 59.105 41.667 0.00 0.00 32.34 2.15
174 175 1.260297 CATGCGAGTCACGTGAAAACA 59.740 47.619 21.95 16.17 44.60 2.83
183 184 4.156922 AGTCACGTGAAAACACAATTTGGA 59.843 37.500 21.95 0.00 0.00 3.53
231 242 2.289133 ACAACGGAGAGAAGGAAAGAGC 60.289 50.000 0.00 0.00 0.00 4.09
247 258 0.538287 GAGCAGGCCACCCCATTATC 60.538 60.000 5.01 0.00 35.39 1.75
255 266 4.785376 AGGCCACCCCATTATCTATCTTAG 59.215 45.833 5.01 0.00 35.39 2.18
268 280 0.988678 ATCTTAGGGGTGTGGAGGGC 60.989 60.000 0.00 0.00 0.00 5.19
270 282 3.549433 TTAGGGGTGTGGAGGGCGA 62.549 63.158 0.00 0.00 0.00 5.54
318 330 4.528596 CAGTATCTATCTTAGGGGTGTGGG 59.471 50.000 0.00 0.00 0.00 4.61
336 348 3.056328 GAGGGGGTGCAAGTTCGC 61.056 66.667 0.00 0.00 0.00 4.70
346 358 1.466950 TGCAAGTTCGCCGGAAATAAG 59.533 47.619 5.05 0.00 33.05 1.73
348 360 1.737793 CAAGTTCGCCGGAAATAAGCT 59.262 47.619 5.05 0.00 33.05 3.74
351 363 2.418976 AGTTCGCCGGAAATAAGCTTTC 59.581 45.455 5.05 0.00 33.05 2.62
352 364 2.102070 TCGCCGGAAATAAGCTTTCA 57.898 45.000 5.05 0.00 0.00 2.69
353 365 2.639065 TCGCCGGAAATAAGCTTTCAT 58.361 42.857 5.05 0.00 0.00 2.57
354 366 2.612212 TCGCCGGAAATAAGCTTTCATC 59.388 45.455 5.05 0.06 0.00 2.92
355 367 2.354510 CGCCGGAAATAAGCTTTCATCA 59.645 45.455 5.05 0.00 0.00 3.07
356 368 3.003689 CGCCGGAAATAAGCTTTCATCAT 59.996 43.478 5.05 0.00 0.00 2.45
357 369 4.540824 GCCGGAAATAAGCTTTCATCATC 58.459 43.478 5.05 0.00 0.00 2.92
358 370 4.776743 CCGGAAATAAGCTTTCATCATCG 58.223 43.478 3.20 0.98 0.00 3.84
359 371 4.319766 CCGGAAATAAGCTTTCATCATCGG 60.320 45.833 3.20 6.62 0.00 4.18
360 372 4.319766 CGGAAATAAGCTTTCATCATCGGG 60.320 45.833 3.20 0.00 0.00 5.14
361 373 4.022849 GGAAATAAGCTTTCATCATCGGGG 60.023 45.833 3.20 0.00 0.00 5.73
362 374 1.967319 TAAGCTTTCATCATCGGGGC 58.033 50.000 3.20 0.00 0.00 5.80
363 375 0.257039 AAGCTTTCATCATCGGGGCT 59.743 50.000 0.00 0.00 0.00 5.19
364 376 1.131638 AGCTTTCATCATCGGGGCTA 58.868 50.000 0.00 0.00 0.00 3.93
365 377 1.071385 AGCTTTCATCATCGGGGCTAG 59.929 52.381 0.00 0.00 0.00 3.42
366 378 1.070758 GCTTTCATCATCGGGGCTAGA 59.929 52.381 0.00 0.00 0.00 2.43
367 379 2.869636 GCTTTCATCATCGGGGCTAGAG 60.870 54.545 0.00 0.00 0.00 2.43
368 380 1.342074 TTCATCATCGGGGCTAGAGG 58.658 55.000 0.00 0.00 0.00 3.69
369 381 0.542938 TCATCATCGGGGCTAGAGGG 60.543 60.000 0.00 0.00 0.00 4.30
370 382 1.229336 ATCATCGGGGCTAGAGGGG 60.229 63.158 0.00 0.00 0.00 4.79
371 383 2.037304 ATCATCGGGGCTAGAGGGGT 62.037 60.000 0.00 0.00 0.00 4.95
372 384 2.122813 ATCGGGGCTAGAGGGGTG 60.123 66.667 0.00 0.00 0.00 4.61
373 385 3.776016 ATCGGGGCTAGAGGGGTGG 62.776 68.421 0.00 0.00 0.00 4.61
375 387 4.825679 GGGGCTAGAGGGGTGGCT 62.826 72.222 0.00 0.00 0.00 4.75
376 388 3.483869 GGGCTAGAGGGGTGGCTG 61.484 72.222 0.00 0.00 0.00 4.85
377 389 3.483869 GGCTAGAGGGGTGGCTGG 61.484 72.222 0.00 0.00 0.00 4.85
378 390 3.483869 GCTAGAGGGGTGGCTGGG 61.484 72.222 0.00 0.00 0.00 4.45
379 391 2.770048 CTAGAGGGGTGGCTGGGG 60.770 72.222 0.00 0.00 0.00 4.96
407 419 3.760035 CACGACGGTGGGAGGAGG 61.760 72.222 0.00 0.00 40.58 4.30
408 420 4.296729 ACGACGGTGGGAGGAGGT 62.297 66.667 0.00 0.00 0.00 3.85
409 421 2.995574 CGACGGTGGGAGGAGGTT 60.996 66.667 0.00 0.00 0.00 3.50
410 422 2.663196 GACGGTGGGAGGAGGTTG 59.337 66.667 0.00 0.00 0.00 3.77
411 423 1.911766 GACGGTGGGAGGAGGTTGA 60.912 63.158 0.00 0.00 0.00 3.18
412 424 1.889530 GACGGTGGGAGGAGGTTGAG 61.890 65.000 0.00 0.00 0.00 3.02
413 425 1.609501 CGGTGGGAGGAGGTTGAGA 60.610 63.158 0.00 0.00 0.00 3.27
414 426 1.608717 CGGTGGGAGGAGGTTGAGAG 61.609 65.000 0.00 0.00 0.00 3.20
415 427 1.268283 GGTGGGAGGAGGTTGAGAGG 61.268 65.000 0.00 0.00 0.00 3.69
416 428 0.252284 GTGGGAGGAGGTTGAGAGGA 60.252 60.000 0.00 0.00 0.00 3.71
417 429 0.041833 TGGGAGGAGGTTGAGAGGAG 59.958 60.000 0.00 0.00 0.00 3.69
418 430 0.689412 GGGAGGAGGTTGAGAGGAGG 60.689 65.000 0.00 0.00 0.00 4.30
419 431 0.689412 GGAGGAGGTTGAGAGGAGGG 60.689 65.000 0.00 0.00 0.00 4.30
420 432 1.306568 AGGAGGTTGAGAGGAGGGC 60.307 63.158 0.00 0.00 0.00 5.19
421 433 2.726351 GGAGGTTGAGAGGAGGGCG 61.726 68.421 0.00 0.00 0.00 6.13
422 434 2.685380 AGGTTGAGAGGAGGGCGG 60.685 66.667 0.00 0.00 0.00 6.13
423 435 3.787001 GGTTGAGAGGAGGGCGGG 61.787 72.222 0.00 0.00 0.00 6.13
424 436 4.475135 GTTGAGAGGAGGGCGGGC 62.475 72.222 0.00 0.00 0.00 6.13
441 453 4.680237 CAGCGAGGTTGTGCGGGA 62.680 66.667 0.00 0.00 35.87 5.14
442 454 4.379243 AGCGAGGTTGTGCGGGAG 62.379 66.667 0.00 0.00 35.87 4.30
491 503 3.637184 GGTTTGACCGGTGGTATGT 57.363 52.632 14.63 0.00 35.25 2.29
492 504 1.900245 GGTTTGACCGGTGGTATGTT 58.100 50.000 14.63 0.00 35.25 2.71
493 505 1.808343 GGTTTGACCGGTGGTATGTTC 59.192 52.381 14.63 0.00 35.25 3.18
494 506 1.461897 GTTTGACCGGTGGTATGTTCG 59.538 52.381 14.63 0.00 35.25 3.95
495 507 0.680618 TTGACCGGTGGTATGTTCGT 59.319 50.000 14.63 0.00 35.25 3.85
496 508 1.543607 TGACCGGTGGTATGTTCGTA 58.456 50.000 14.63 0.00 35.25 3.43
497 509 2.101783 TGACCGGTGGTATGTTCGTAT 58.898 47.619 14.63 0.00 35.25 3.06
498 510 2.159212 TGACCGGTGGTATGTTCGTATG 60.159 50.000 14.63 0.00 35.25 2.39
499 511 1.214367 CCGGTGGTATGTTCGTATGC 58.786 55.000 0.00 0.00 0.00 3.14
500 512 0.850217 CGGTGGTATGTTCGTATGCG 59.150 55.000 0.00 0.00 39.92 4.73
501 513 1.214367 GGTGGTATGTTCGTATGCGG 58.786 55.000 2.62 0.00 38.89 5.69
502 514 1.214367 GTGGTATGTTCGTATGCGGG 58.786 55.000 2.62 0.00 38.89 6.13
503 515 1.112950 TGGTATGTTCGTATGCGGGA 58.887 50.000 2.62 0.00 38.89 5.14
504 516 1.481363 TGGTATGTTCGTATGCGGGAA 59.519 47.619 2.62 0.00 38.89 3.97
505 517 2.132762 GGTATGTTCGTATGCGGGAAG 58.867 52.381 2.62 0.00 38.89 3.46
506 518 2.223876 GGTATGTTCGTATGCGGGAAGA 60.224 50.000 2.62 0.00 38.89 2.87
507 519 2.684001 ATGTTCGTATGCGGGAAGAA 57.316 45.000 2.62 0.00 38.89 2.52
508 520 2.004583 TGTTCGTATGCGGGAAGAAG 57.995 50.000 2.62 0.00 38.89 2.85
509 521 1.546923 TGTTCGTATGCGGGAAGAAGA 59.453 47.619 2.62 0.00 38.89 2.87
510 522 2.028839 TGTTCGTATGCGGGAAGAAGAA 60.029 45.455 2.62 0.00 38.89 2.52
511 523 2.579207 TCGTATGCGGGAAGAAGAAG 57.421 50.000 2.62 0.00 38.89 2.85
512 524 2.097036 TCGTATGCGGGAAGAAGAAGA 58.903 47.619 2.62 0.00 38.89 2.87
513 525 2.494471 TCGTATGCGGGAAGAAGAAGAA 59.506 45.455 2.62 0.00 38.89 2.52
514 526 2.603560 CGTATGCGGGAAGAAGAAGAAC 59.396 50.000 0.00 0.00 0.00 3.01
515 527 2.859165 ATGCGGGAAGAAGAAGAACA 57.141 45.000 0.00 0.00 0.00 3.18
516 528 2.169832 TGCGGGAAGAAGAAGAACAG 57.830 50.000 0.00 0.00 0.00 3.16
517 529 1.270839 TGCGGGAAGAAGAAGAACAGG 60.271 52.381 0.00 0.00 0.00 4.00
518 530 1.946283 GCGGGAAGAAGAAGAACAGGG 60.946 57.143 0.00 0.00 0.00 4.45
519 531 1.339151 CGGGAAGAAGAAGAACAGGGG 60.339 57.143 0.00 0.00 0.00 4.79
520 532 1.705745 GGGAAGAAGAAGAACAGGGGT 59.294 52.381 0.00 0.00 0.00 4.95
521 533 2.553247 GGGAAGAAGAAGAACAGGGGTG 60.553 54.545 0.00 0.00 0.00 4.61
522 534 2.372172 GGAAGAAGAAGAACAGGGGTGA 59.628 50.000 0.00 0.00 0.00 4.02
523 535 3.558109 GGAAGAAGAAGAACAGGGGTGAG 60.558 52.174 0.00 0.00 0.00 3.51
524 536 1.349357 AGAAGAAGAACAGGGGTGAGC 59.651 52.381 0.00 0.00 0.00 4.26
525 537 1.349357 GAAGAAGAACAGGGGTGAGCT 59.651 52.381 0.00 0.00 0.00 4.09
526 538 0.689623 AGAAGAACAGGGGTGAGCTG 59.310 55.000 0.00 0.00 0.00 4.24
527 539 0.322008 GAAGAACAGGGGTGAGCTGG 60.322 60.000 0.00 0.00 0.00 4.85
528 540 0.768221 AAGAACAGGGGTGAGCTGGA 60.768 55.000 0.00 0.00 0.00 3.86
529 541 1.197430 AGAACAGGGGTGAGCTGGAG 61.197 60.000 0.00 0.00 0.00 3.86
530 542 2.190488 GAACAGGGGTGAGCTGGAGG 62.190 65.000 0.00 0.00 0.00 4.30
531 543 2.608988 CAGGGGTGAGCTGGAGGT 60.609 66.667 0.00 0.00 0.00 3.85
532 544 2.208349 AGGGGTGAGCTGGAGGTT 59.792 61.111 0.00 0.00 0.00 3.50
533 545 2.227036 AGGGGTGAGCTGGAGGTTG 61.227 63.158 0.00 0.00 0.00 3.77
534 546 2.224159 GGGGTGAGCTGGAGGTTGA 61.224 63.158 0.00 0.00 0.00 3.18
535 547 1.761174 GGGTGAGCTGGAGGTTGAA 59.239 57.895 0.00 0.00 0.00 2.69
536 548 0.322008 GGGTGAGCTGGAGGTTGAAG 60.322 60.000 0.00 0.00 0.00 3.02
537 549 0.687354 GGTGAGCTGGAGGTTGAAGA 59.313 55.000 0.00 0.00 0.00 2.87
538 550 1.072331 GGTGAGCTGGAGGTTGAAGAA 59.928 52.381 0.00 0.00 0.00 2.52
539 551 2.421619 GTGAGCTGGAGGTTGAAGAAG 58.578 52.381 0.00 0.00 0.00 2.85
540 552 1.271054 TGAGCTGGAGGTTGAAGAAGC 60.271 52.381 0.00 0.00 0.00 3.86
541 553 0.767375 AGCTGGAGGTTGAAGAAGCA 59.233 50.000 0.00 0.00 33.08 3.91
542 554 1.143684 AGCTGGAGGTTGAAGAAGCAA 59.856 47.619 0.00 0.00 33.08 3.91
543 555 2.165998 GCTGGAGGTTGAAGAAGCAAT 58.834 47.619 0.00 0.00 31.56 3.56
544 556 2.163211 GCTGGAGGTTGAAGAAGCAATC 59.837 50.000 0.00 0.00 31.56 2.67
545 557 3.683802 CTGGAGGTTGAAGAAGCAATCT 58.316 45.455 0.00 0.00 41.69 2.40
546 558 3.415212 TGGAGGTTGAAGAAGCAATCTG 58.585 45.455 0.00 0.00 39.23 2.90
547 559 3.072915 TGGAGGTTGAAGAAGCAATCTGA 59.927 43.478 0.00 0.00 39.23 3.27
548 560 4.263639 TGGAGGTTGAAGAAGCAATCTGAT 60.264 41.667 0.00 0.00 39.23 2.90
549 561 4.335037 GGAGGTTGAAGAAGCAATCTGATC 59.665 45.833 0.00 0.00 39.23 2.92
550 562 4.268359 AGGTTGAAGAAGCAATCTGATCC 58.732 43.478 0.00 0.00 37.80 3.36
551 563 3.064545 GGTTGAAGAAGCAATCTGATCCG 59.935 47.826 0.00 0.00 38.79 4.18
552 564 3.616956 TGAAGAAGCAATCTGATCCGT 57.383 42.857 0.00 0.00 38.79 4.69
553 565 3.264947 TGAAGAAGCAATCTGATCCGTG 58.735 45.455 0.00 0.00 38.79 4.94
554 566 1.661341 AGAAGCAATCTGATCCGTGC 58.339 50.000 4.95 4.95 36.88 5.34
555 567 0.302890 GAAGCAATCTGATCCGTGCG 59.697 55.000 7.05 0.00 41.90 5.34
556 568 0.391661 AAGCAATCTGATCCGTGCGT 60.392 50.000 7.05 2.16 41.90 5.24
557 569 0.807667 AGCAATCTGATCCGTGCGTC 60.808 55.000 7.05 0.00 41.90 5.19
558 570 0.807667 GCAATCTGATCCGTGCGTCT 60.808 55.000 0.00 0.00 0.00 4.18
559 571 1.645034 CAATCTGATCCGTGCGTCTT 58.355 50.000 0.00 0.00 0.00 3.01
560 572 1.325640 CAATCTGATCCGTGCGTCTTG 59.674 52.381 0.00 0.00 0.00 3.02
561 573 0.807667 ATCTGATCCGTGCGTCTTGC 60.808 55.000 0.00 0.00 46.70 4.01
570 582 2.480555 GCGTCTTGCATCCAACGG 59.519 61.111 11.09 0.00 45.45 4.44
571 583 2.480555 CGTCTTGCATCCAACGGC 59.519 61.111 0.00 0.00 0.00 5.68
572 584 2.034879 CGTCTTGCATCCAACGGCT 61.035 57.895 0.00 0.00 0.00 5.52
573 585 1.503542 GTCTTGCATCCAACGGCTG 59.496 57.895 0.00 0.00 0.00 4.85
574 586 0.955428 GTCTTGCATCCAACGGCTGA 60.955 55.000 0.00 0.00 0.00 4.26
575 587 0.250684 TCTTGCATCCAACGGCTGAA 60.251 50.000 0.00 0.00 0.00 3.02
576 588 0.597568 CTTGCATCCAACGGCTGAAA 59.402 50.000 0.00 0.00 0.00 2.69
577 589 0.313672 TTGCATCCAACGGCTGAAAC 59.686 50.000 0.00 0.00 0.00 2.78
578 590 0.821301 TGCATCCAACGGCTGAAACA 60.821 50.000 0.00 0.00 0.00 2.83
579 591 0.313672 GCATCCAACGGCTGAAACAA 59.686 50.000 0.00 0.00 0.00 2.83
580 592 1.269517 GCATCCAACGGCTGAAACAAA 60.270 47.619 0.00 0.00 0.00 2.83
581 593 2.610232 GCATCCAACGGCTGAAACAAAT 60.610 45.455 0.00 0.00 0.00 2.32
582 594 3.652274 CATCCAACGGCTGAAACAAATT 58.348 40.909 0.00 0.00 0.00 1.82
583 595 3.363341 TCCAACGGCTGAAACAAATTC 57.637 42.857 0.00 0.00 38.60 2.17
584 596 2.690497 TCCAACGGCTGAAACAAATTCA 59.310 40.909 0.00 0.00 45.71 2.57
585 597 2.794350 CCAACGGCTGAAACAAATTCAC 59.206 45.455 0.00 0.00 43.08 3.18
586 598 3.490761 CCAACGGCTGAAACAAATTCACT 60.491 43.478 0.00 0.00 43.08 3.41
587 599 3.354089 ACGGCTGAAACAAATTCACTG 57.646 42.857 0.00 0.00 43.08 3.66
588 600 2.948979 ACGGCTGAAACAAATTCACTGA 59.051 40.909 0.00 0.00 43.08 3.41
589 601 3.243068 ACGGCTGAAACAAATTCACTGAC 60.243 43.478 0.00 0.00 43.08 3.51
590 602 3.642705 GGCTGAAACAAATTCACTGACC 58.357 45.455 0.00 0.00 43.08 4.02
591 603 3.552890 GGCTGAAACAAATTCACTGACCC 60.553 47.826 0.00 0.00 43.08 4.46
592 604 3.068024 GCTGAAACAAATTCACTGACCCA 59.932 43.478 0.00 0.00 43.08 4.51
593 605 4.794003 GCTGAAACAAATTCACTGACCCAG 60.794 45.833 0.00 0.00 43.08 4.45
594 606 4.531854 TGAAACAAATTCACTGACCCAGA 58.468 39.130 0.45 0.00 43.08 3.86
595 607 5.139727 TGAAACAAATTCACTGACCCAGAT 58.860 37.500 0.45 0.00 43.08 2.90
596 608 5.598005 TGAAACAAATTCACTGACCCAGATT 59.402 36.000 0.45 0.00 43.08 2.40
597 609 5.458041 AACAAATTCACTGACCCAGATTG 57.542 39.130 0.45 0.00 35.18 2.67
598 610 4.728772 ACAAATTCACTGACCCAGATTGA 58.271 39.130 0.45 0.00 35.18 2.57
599 611 5.139727 ACAAATTCACTGACCCAGATTGAA 58.860 37.500 0.45 2.31 33.33 2.69
600 612 5.010012 ACAAATTCACTGACCCAGATTGAAC 59.990 40.000 0.45 0.00 32.21 3.18
601 613 4.647564 ATTCACTGACCCAGATTGAACT 57.352 40.909 0.45 0.00 32.21 3.01
602 614 4.437682 TTCACTGACCCAGATTGAACTT 57.562 40.909 0.45 0.00 35.18 2.66
603 615 4.008074 TCACTGACCCAGATTGAACTTC 57.992 45.455 0.45 0.00 35.18 3.01
604 616 3.390967 TCACTGACCCAGATTGAACTTCA 59.609 43.478 0.45 0.00 35.18 3.02
605 617 4.136796 CACTGACCCAGATTGAACTTCAA 58.863 43.478 6.67 6.67 36.50 2.69
617 629 5.917541 TTGAACTTCAATCGTCTTACACC 57.082 39.130 0.00 0.00 30.26 4.16
618 630 5.209818 TGAACTTCAATCGTCTTACACCT 57.790 39.130 0.00 0.00 0.00 4.00
619 631 6.335471 TGAACTTCAATCGTCTTACACCTA 57.665 37.500 0.00 0.00 0.00 3.08
620 632 6.387465 TGAACTTCAATCGTCTTACACCTAG 58.613 40.000 0.00 0.00 0.00 3.02
621 633 4.745649 ACTTCAATCGTCTTACACCTAGC 58.254 43.478 0.00 0.00 0.00 3.42
622 634 4.219944 ACTTCAATCGTCTTACACCTAGCA 59.780 41.667 0.00 0.00 0.00 3.49
623 635 4.794278 TCAATCGTCTTACACCTAGCAA 57.206 40.909 0.00 0.00 0.00 3.91
624 636 5.339008 TCAATCGTCTTACACCTAGCAAT 57.661 39.130 0.00 0.00 0.00 3.56
625 637 5.348986 TCAATCGTCTTACACCTAGCAATC 58.651 41.667 0.00 0.00 0.00 2.67
626 638 3.795623 TCGTCTTACACCTAGCAATCC 57.204 47.619 0.00 0.00 0.00 3.01
627 639 2.429610 TCGTCTTACACCTAGCAATCCC 59.570 50.000 0.00 0.00 0.00 3.85
628 640 2.431057 CGTCTTACACCTAGCAATCCCT 59.569 50.000 0.00 0.00 0.00 4.20
629 641 3.118738 CGTCTTACACCTAGCAATCCCTT 60.119 47.826 0.00 0.00 0.00 3.95
630 642 4.098960 CGTCTTACACCTAGCAATCCCTTA 59.901 45.833 0.00 0.00 0.00 2.69
631 643 5.221461 CGTCTTACACCTAGCAATCCCTTAT 60.221 44.000 0.00 0.00 0.00 1.73
632 644 6.592870 GTCTTACACCTAGCAATCCCTTATT 58.407 40.000 0.00 0.00 0.00 1.40
633 645 7.054751 GTCTTACACCTAGCAATCCCTTATTT 58.945 38.462 0.00 0.00 0.00 1.40
634 646 7.556635 GTCTTACACCTAGCAATCCCTTATTTT 59.443 37.037 0.00 0.00 0.00 1.82
635 647 8.774183 TCTTACACCTAGCAATCCCTTATTTTA 58.226 33.333 0.00 0.00 0.00 1.52
636 648 9.574516 CTTACACCTAGCAATCCCTTATTTTAT 57.425 33.333 0.00 0.00 0.00 1.40
637 649 9.569122 TTACACCTAGCAATCCCTTATTTTATC 57.431 33.333 0.00 0.00 0.00 1.75
638 650 7.816411 ACACCTAGCAATCCCTTATTTTATCT 58.184 34.615 0.00 0.00 0.00 1.98
639 651 8.282256 ACACCTAGCAATCCCTTATTTTATCTT 58.718 33.333 0.00 0.00 0.00 2.40
640 652 9.136323 CACCTAGCAATCCCTTATTTTATCTTT 57.864 33.333 0.00 0.00 0.00 2.52
708 720 3.345508 AAAATACTGAACGTCCCCTCC 57.654 47.619 0.00 0.00 0.00 4.30
709 721 1.946984 AATACTGAACGTCCCCTCCA 58.053 50.000 0.00 0.00 0.00 3.86
710 722 1.486211 ATACTGAACGTCCCCTCCAG 58.514 55.000 0.00 0.00 0.00 3.86
711 723 0.613853 TACTGAACGTCCCCTCCAGG 60.614 60.000 0.00 0.00 0.00 4.45
712 724 1.913762 CTGAACGTCCCCTCCAGGT 60.914 63.158 0.00 0.00 0.00 4.00
713 725 1.889530 CTGAACGTCCCCTCCAGGTC 61.890 65.000 0.00 0.00 0.00 3.85
714 726 1.609794 GAACGTCCCCTCCAGGTCT 60.610 63.158 0.00 0.00 0.00 3.85
715 727 0.324091 GAACGTCCCCTCCAGGTCTA 60.324 60.000 0.00 0.00 0.00 2.59
716 728 0.338814 AACGTCCCCTCCAGGTCTAT 59.661 55.000 0.00 0.00 0.00 1.98
717 729 1.229131 ACGTCCCCTCCAGGTCTATA 58.771 55.000 0.00 0.00 0.00 1.31
718 730 1.572415 ACGTCCCCTCCAGGTCTATAA 59.428 52.381 0.00 0.00 0.00 0.98
719 731 2.179424 ACGTCCCCTCCAGGTCTATAAT 59.821 50.000 0.00 0.00 0.00 1.28
720 732 2.826725 CGTCCCCTCCAGGTCTATAATC 59.173 54.545 0.00 0.00 0.00 1.75
721 733 3.500654 CGTCCCCTCCAGGTCTATAATCT 60.501 52.174 0.00 0.00 0.00 2.40
722 734 3.835395 GTCCCCTCCAGGTCTATAATCTG 59.165 52.174 0.00 0.00 0.00 2.90
723 735 3.471306 TCCCCTCCAGGTCTATAATCTGT 59.529 47.826 0.00 0.00 0.00 3.41
724 736 3.835395 CCCCTCCAGGTCTATAATCTGTC 59.165 52.174 0.00 0.00 0.00 3.51
725 737 4.483950 CCCTCCAGGTCTATAATCTGTCA 58.516 47.826 0.00 0.00 0.00 3.58
726 738 4.282195 CCCTCCAGGTCTATAATCTGTCAC 59.718 50.000 0.00 0.00 0.00 3.67
727 739 4.282195 CCTCCAGGTCTATAATCTGTCACC 59.718 50.000 0.00 0.00 0.00 4.02
728 740 4.878968 TCCAGGTCTATAATCTGTCACCA 58.121 43.478 0.00 0.00 0.00 4.17
729 741 5.467738 TCCAGGTCTATAATCTGTCACCAT 58.532 41.667 0.00 0.00 0.00 3.55
730 742 5.305386 TCCAGGTCTATAATCTGTCACCATG 59.695 44.000 0.00 0.00 0.00 3.66
731 743 4.993584 CAGGTCTATAATCTGTCACCATGC 59.006 45.833 0.00 0.00 0.00 4.06
732 744 4.040952 AGGTCTATAATCTGTCACCATGCC 59.959 45.833 0.00 0.00 0.00 4.40
733 745 4.202357 GGTCTATAATCTGTCACCATGCCA 60.202 45.833 0.00 0.00 0.00 4.92
734 746 5.513788 GGTCTATAATCTGTCACCATGCCAT 60.514 44.000 0.00 0.00 0.00 4.40
735 747 6.000219 GTCTATAATCTGTCACCATGCCATT 59.000 40.000 0.00 0.00 0.00 3.16
736 748 6.488006 GTCTATAATCTGTCACCATGCCATTT 59.512 38.462 0.00 0.00 0.00 2.32
737 749 7.013655 GTCTATAATCTGTCACCATGCCATTTT 59.986 37.037 0.00 0.00 0.00 1.82
738 750 3.880047 ATCTGTCACCATGCCATTTTG 57.120 42.857 0.00 0.00 0.00 2.44
739 751 1.273048 TCTGTCACCATGCCATTTTGC 59.727 47.619 0.00 0.00 0.00 3.68
740 752 1.001068 CTGTCACCATGCCATTTTGCA 59.999 47.619 0.00 0.00 46.94 4.08
741 753 1.415289 TGTCACCATGCCATTTTGCAA 59.585 42.857 0.00 0.00 45.84 4.08
742 754 2.158856 TGTCACCATGCCATTTTGCAAA 60.159 40.909 8.05 8.05 45.84 3.68
743 755 2.481185 GTCACCATGCCATTTTGCAAAG 59.519 45.455 12.41 2.14 45.84 2.77
744 756 2.104451 TCACCATGCCATTTTGCAAAGT 59.896 40.909 12.41 6.68 45.84 2.66
745 757 2.224549 CACCATGCCATTTTGCAAAGTG 59.775 45.455 23.59 23.59 45.84 3.16
746 758 2.104451 ACCATGCCATTTTGCAAAGTGA 59.896 40.909 29.86 15.44 45.84 3.41
747 759 3.139850 CCATGCCATTTTGCAAAGTGAA 58.860 40.909 29.86 19.85 45.84 3.18
748 760 3.187637 CCATGCCATTTTGCAAAGTGAAG 59.812 43.478 29.86 17.94 45.84 3.02
749 761 3.540314 TGCCATTTTGCAAAGTGAAGT 57.460 38.095 29.86 5.15 38.56 3.01
750 762 4.662468 TGCCATTTTGCAAAGTGAAGTA 57.338 36.364 29.86 14.68 38.56 2.24
751 763 4.619973 TGCCATTTTGCAAAGTGAAGTAG 58.380 39.130 29.86 16.72 38.56 2.57
752 764 4.099266 TGCCATTTTGCAAAGTGAAGTAGT 59.901 37.500 29.86 0.00 38.56 2.73
753 765 5.300539 TGCCATTTTGCAAAGTGAAGTAGTA 59.699 36.000 29.86 13.45 38.56 1.82
754 766 6.183360 TGCCATTTTGCAAAGTGAAGTAGTAA 60.183 34.615 29.86 5.35 38.56 2.24
783 795 3.072330 TGGTCTTGTGGAAAGCATCTGTA 59.928 43.478 0.00 0.00 0.00 2.74
806 818 4.095483 AGAAAGCGACAAGAAATAGCATGG 59.905 41.667 0.00 0.00 0.00 3.66
841 853 2.361438 AGGAGACGAGACGTTCAAACTT 59.639 45.455 0.00 0.00 41.37 2.66
924 957 4.343323 CACGCCACCCATCCCACA 62.343 66.667 0.00 0.00 0.00 4.17
927 960 3.978193 GCCACCCATCCCACACCA 61.978 66.667 0.00 0.00 0.00 4.17
928 961 2.035626 CCACCCATCCCACACCAC 59.964 66.667 0.00 0.00 0.00 4.16
929 962 2.359850 CACCCATCCCACACCACG 60.360 66.667 0.00 0.00 0.00 4.94
930 963 4.344865 ACCCATCCCACACCACGC 62.345 66.667 0.00 0.00 0.00 5.34
931 964 4.033776 CCCATCCCACACCACGCT 62.034 66.667 0.00 0.00 0.00 5.07
932 965 2.436646 CCATCCCACACCACGCTC 60.437 66.667 0.00 0.00 0.00 5.03
933 966 2.436646 CATCCCACACCACGCTCC 60.437 66.667 0.00 0.00 0.00 4.70
934 967 3.717294 ATCCCACACCACGCTCCC 61.717 66.667 0.00 0.00 0.00 4.30
1156 1197 1.728672 GTCTCGATCCTCACCGTCC 59.271 63.158 0.00 0.00 0.00 4.79
1494 1550 2.048127 GACGAAGCCACGCTCCTT 60.048 61.111 0.00 0.00 38.25 3.36
1806 1888 3.964875 CGTGCTGGTGTTGGTGGC 61.965 66.667 0.00 0.00 0.00 5.01
1807 1889 2.832661 GTGCTGGTGTTGGTGGCA 60.833 61.111 0.00 0.00 0.00 4.92
2155 2315 1.135333 CGCTCTCCTCCTCAGGTAAAC 59.865 57.143 0.00 0.00 41.28 2.01
2177 2345 2.737679 GCTTTGCTGCCCATCATCTTTC 60.738 50.000 0.00 0.00 0.00 2.62
2294 2678 2.093306 TGTTTCATGCCTCTACACGG 57.907 50.000 0.00 0.00 0.00 4.94
2412 4090 2.496470 GTGGACTACTTGAGGATCGGTT 59.504 50.000 0.00 0.00 38.61 4.44
2413 4091 3.056035 GTGGACTACTTGAGGATCGGTTT 60.056 47.826 0.00 0.00 38.61 3.27
2415 4093 3.933332 GGACTACTTGAGGATCGGTTTTG 59.067 47.826 0.00 0.00 38.61 2.44
2416 4094 3.335579 ACTACTTGAGGATCGGTTTTGC 58.664 45.455 0.00 0.00 38.61 3.68
2417 4095 2.568623 ACTTGAGGATCGGTTTTGCT 57.431 45.000 0.00 0.00 38.61 3.91
2418 4096 2.427506 ACTTGAGGATCGGTTTTGCTC 58.572 47.619 0.00 0.00 38.61 4.26
2419 4097 1.740025 CTTGAGGATCGGTTTTGCTCC 59.260 52.381 0.00 0.00 38.61 4.70
2420 4098 0.035439 TGAGGATCGGTTTTGCTCCC 60.035 55.000 0.00 0.00 38.61 4.30
2424 4122 0.171231 GATCGGTTTTGCTCCCTTGC 59.829 55.000 0.00 0.00 0.00 4.01
2426 4124 1.172180 TCGGTTTTGCTCCCTTGCAG 61.172 55.000 0.00 0.00 44.27 4.41
2513 4219 9.538508 GGTTACTGTACCAATAATATCGACTTT 57.461 33.333 0.00 0.00 38.12 2.66
2599 4310 0.465642 GGAATTACCCGGCCCTCTTG 60.466 60.000 0.00 0.00 0.00 3.02
2615 4333 4.202441 CCTCTTGTTATGAATGGGTGAGG 58.798 47.826 0.00 0.00 33.68 3.86
2679 4403 3.061429 GCTTGCAGTCGAGAAGAATGTAC 59.939 47.826 0.00 0.00 45.83 2.90
2680 4404 4.489810 CTTGCAGTCGAGAAGAATGTACT 58.510 43.478 0.00 0.00 45.83 2.73
2681 4405 5.638596 TTGCAGTCGAGAAGAATGTACTA 57.361 39.130 0.00 0.00 45.83 1.82
2764 4561 6.174720 TGAGGTCTGGTAGCAATAATAAGG 57.825 41.667 0.00 0.00 0.00 2.69
2767 4564 4.757149 GGTCTGGTAGCAATAATAAGGCTG 59.243 45.833 0.00 0.00 38.55 4.85
2830 4629 6.000891 TGTTTCGAAATCCAGATTTGTCTG 57.999 37.500 14.69 0.00 40.77 3.51
2913 4712 4.108299 CACGCCCATACCAGCCCA 62.108 66.667 0.00 0.00 0.00 5.36
3048 4847 0.601311 CCATAGCGTTGCTCTAGCCC 60.601 60.000 0.00 0.00 40.44 5.19
3061 4860 3.622455 GCTCTAGCCCCAAACACAAGTAT 60.622 47.826 0.00 0.00 34.31 2.12
3062 4861 4.383770 GCTCTAGCCCCAAACACAAGTATA 60.384 45.833 0.00 0.00 34.31 1.47
3063 4862 5.093849 TCTAGCCCCAAACACAAGTATAC 57.906 43.478 0.00 0.00 0.00 1.47
3064 4863 2.706890 AGCCCCAAACACAAGTATACG 58.293 47.619 0.00 0.00 0.00 3.06
3065 4864 2.039348 AGCCCCAAACACAAGTATACGT 59.961 45.455 0.00 0.00 0.00 3.57
3066 4865 3.261390 AGCCCCAAACACAAGTATACGTA 59.739 43.478 0.00 0.00 0.00 3.57
3067 4866 3.371898 GCCCCAAACACAAGTATACGTAC 59.628 47.826 0.00 0.00 0.00 3.67
3068 4867 3.613737 CCCCAAACACAAGTATACGTACG 59.386 47.826 15.01 15.01 35.92 3.67
3069 4868 4.484236 CCCAAACACAAGTATACGTACGA 58.516 43.478 24.41 6.04 35.92 3.43
3170 4970 1.827789 GCCGCTGCCCATATCCAAA 60.828 57.895 0.00 0.00 0.00 3.28
3520 5320 0.454196 AACGAACTGCCGCTGTTTTT 59.546 45.000 15.80 10.08 0.00 1.94
3600 5400 3.367395 CGCAGATCTTGTTCTGGTAGTGA 60.367 47.826 0.00 0.00 42.78 3.41
3757 5557 3.131396 GGCGATCCAAAGTAATCACGAT 58.869 45.455 0.00 0.00 0.00 3.73
3765 5565 2.779755 AGTAATCACGATTGGTGCCA 57.220 45.000 2.48 0.00 46.56 4.92
3927 5732 3.353836 GGCGTCGGTTGTGTGCAT 61.354 61.111 0.00 0.00 0.00 3.96
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
65 66 6.536582 CACATTATAGTGAACTCAGGGAACAG 59.463 42.308 1.74 0.00 42.05 3.16
87 88 1.632920 TCTGGGCCACATATGAACACA 59.367 47.619 10.38 4.53 0.00 3.72
156 157 0.648441 GTGTTTTCACGTGACTCGCA 59.352 50.000 19.90 12.06 44.19 5.10
174 175 6.207417 ACTGAAAATCGACTGATCCAAATTGT 59.793 34.615 0.00 0.00 32.24 2.71
183 184 5.152623 TCCTTCACTGAAAATCGACTGAT 57.847 39.130 0.00 0.00 35.98 2.90
231 242 2.915604 AGATAGATAATGGGGTGGCCTG 59.084 50.000 3.32 0.00 0.00 4.85
247 258 2.330216 CCCTCCACACCCCTAAGATAG 58.670 57.143 0.00 0.00 0.00 2.08
255 266 4.489771 CATCGCCCTCCACACCCC 62.490 72.222 0.00 0.00 0.00 4.95
270 282 2.790791 CCTTCTCCGGCGAGCTCAT 61.791 63.158 15.40 0.00 35.94 2.90
318 330 2.359975 CGAACTTGCACCCCCTCC 60.360 66.667 0.00 0.00 0.00 4.30
336 348 4.319766 CCGATGATGAAAGCTTATTTCCGG 60.320 45.833 0.00 0.00 0.00 5.14
346 358 1.070758 TCTAGCCCCGATGATGAAAGC 59.929 52.381 0.00 0.00 0.00 3.51
348 360 1.694150 CCTCTAGCCCCGATGATGAAA 59.306 52.381 0.00 0.00 0.00 2.69
351 363 1.548357 CCCCTCTAGCCCCGATGATG 61.548 65.000 0.00 0.00 0.00 3.07
352 364 1.229336 CCCCTCTAGCCCCGATGAT 60.229 63.158 0.00 0.00 0.00 2.45
353 365 2.201490 CCCCTCTAGCCCCGATGA 59.799 66.667 0.00 0.00 0.00 2.92
354 366 2.122813 ACCCCTCTAGCCCCGATG 60.123 66.667 0.00 0.00 0.00 3.84
355 367 2.122813 CACCCCTCTAGCCCCGAT 60.123 66.667 0.00 0.00 0.00 4.18
356 368 4.475444 CCACCCCTCTAGCCCCGA 62.475 72.222 0.00 0.00 0.00 5.14
358 370 4.825679 AGCCACCCCTCTAGCCCC 62.826 72.222 0.00 0.00 0.00 5.80
359 371 3.483869 CAGCCACCCCTCTAGCCC 61.484 72.222 0.00 0.00 0.00 5.19
360 372 3.483869 CCAGCCACCCCTCTAGCC 61.484 72.222 0.00 0.00 0.00 3.93
361 373 3.483869 CCCAGCCACCCCTCTAGC 61.484 72.222 0.00 0.00 0.00 3.42
362 374 2.770048 CCCCAGCCACCCCTCTAG 60.770 72.222 0.00 0.00 0.00 2.43
382 394 3.698463 CACCGTCGTGTTGTCGCC 61.698 66.667 0.00 0.00 35.10 5.54
383 395 3.698463 CCACCGTCGTGTTGTCGC 61.698 66.667 0.00 0.00 38.41 5.19
384 396 3.033764 CCCACCGTCGTGTTGTCG 61.034 66.667 0.00 0.00 38.41 4.35
385 397 1.663702 CTCCCACCGTCGTGTTGTC 60.664 63.158 0.00 0.00 38.41 3.18
386 398 2.420043 CTCCCACCGTCGTGTTGT 59.580 61.111 0.00 0.00 38.41 3.32
387 399 2.357034 CCTCCCACCGTCGTGTTG 60.357 66.667 0.00 0.00 38.41 3.33
388 400 2.522436 TCCTCCCACCGTCGTGTT 60.522 61.111 0.00 0.00 38.41 3.32
389 401 2.989824 CTCCTCCCACCGTCGTGT 60.990 66.667 0.00 0.00 38.41 4.49
390 402 3.760035 CCTCCTCCCACCGTCGTG 61.760 72.222 0.00 0.00 39.91 4.35
391 403 3.822636 AACCTCCTCCCACCGTCGT 62.823 63.158 0.00 0.00 0.00 4.34
392 404 2.995574 AACCTCCTCCCACCGTCG 60.996 66.667 0.00 0.00 0.00 5.12
393 405 1.889530 CTCAACCTCCTCCCACCGTC 61.890 65.000 0.00 0.00 0.00 4.79
394 406 1.913762 CTCAACCTCCTCCCACCGT 60.914 63.158 0.00 0.00 0.00 4.83
395 407 1.608717 CTCTCAACCTCCTCCCACCG 61.609 65.000 0.00 0.00 0.00 4.94
396 408 1.268283 CCTCTCAACCTCCTCCCACC 61.268 65.000 0.00 0.00 0.00 4.61
397 409 0.252284 TCCTCTCAACCTCCTCCCAC 60.252 60.000 0.00 0.00 0.00 4.61
398 410 0.041833 CTCCTCTCAACCTCCTCCCA 59.958 60.000 0.00 0.00 0.00 4.37
399 411 0.689412 CCTCCTCTCAACCTCCTCCC 60.689 65.000 0.00 0.00 0.00 4.30
400 412 0.689412 CCCTCCTCTCAACCTCCTCC 60.689 65.000 0.00 0.00 0.00 4.30
401 413 1.334384 GCCCTCCTCTCAACCTCCTC 61.334 65.000 0.00 0.00 0.00 3.71
402 414 1.306568 GCCCTCCTCTCAACCTCCT 60.307 63.158 0.00 0.00 0.00 3.69
403 415 2.726351 CGCCCTCCTCTCAACCTCC 61.726 68.421 0.00 0.00 0.00 4.30
404 416 2.726351 CCGCCCTCCTCTCAACCTC 61.726 68.421 0.00 0.00 0.00 3.85
405 417 2.685380 CCGCCCTCCTCTCAACCT 60.685 66.667 0.00 0.00 0.00 3.50
406 418 3.787001 CCCGCCCTCCTCTCAACC 61.787 72.222 0.00 0.00 0.00 3.77
407 419 4.475135 GCCCGCCCTCCTCTCAAC 62.475 72.222 0.00 0.00 0.00 3.18
424 436 4.680237 TCCCGCACAACCTCGCTG 62.680 66.667 0.00 0.00 0.00 5.18
425 437 4.379243 CTCCCGCACAACCTCGCT 62.379 66.667 0.00 0.00 0.00 4.93
473 485 1.808343 GAACATACCACCGGTCAAACC 59.192 52.381 2.59 0.00 37.09 3.27
474 486 1.461897 CGAACATACCACCGGTCAAAC 59.538 52.381 2.59 0.00 37.09 2.93
475 487 1.070445 ACGAACATACCACCGGTCAAA 59.930 47.619 2.59 0.00 37.09 2.69
476 488 0.680618 ACGAACATACCACCGGTCAA 59.319 50.000 2.59 0.00 37.09 3.18
477 489 1.543607 TACGAACATACCACCGGTCA 58.456 50.000 2.59 0.00 37.09 4.02
478 490 2.466846 CATACGAACATACCACCGGTC 58.533 52.381 2.59 0.00 37.09 4.79
479 491 1.472026 GCATACGAACATACCACCGGT 60.472 52.381 0.00 0.00 40.16 5.28
480 492 1.214367 GCATACGAACATACCACCGG 58.786 55.000 0.00 0.00 0.00 5.28
481 493 0.850217 CGCATACGAACATACCACCG 59.150 55.000 0.00 0.00 43.93 4.94
482 494 1.214367 CCGCATACGAACATACCACC 58.786 55.000 0.00 0.00 43.93 4.61
483 495 1.202440 TCCCGCATACGAACATACCAC 60.202 52.381 0.00 0.00 43.93 4.16
484 496 1.112950 TCCCGCATACGAACATACCA 58.887 50.000 0.00 0.00 43.93 3.25
485 497 2.132762 CTTCCCGCATACGAACATACC 58.867 52.381 0.00 0.00 43.93 2.73
486 498 3.088194 TCTTCCCGCATACGAACATAC 57.912 47.619 0.00 0.00 43.93 2.39
487 499 3.382227 TCTTCTTCCCGCATACGAACATA 59.618 43.478 0.00 0.00 43.93 2.29
488 500 2.167693 TCTTCTTCCCGCATACGAACAT 59.832 45.455 0.00 0.00 43.93 2.71
489 501 1.546923 TCTTCTTCCCGCATACGAACA 59.453 47.619 0.00 0.00 43.93 3.18
490 502 2.288961 TCTTCTTCCCGCATACGAAC 57.711 50.000 0.00 0.00 43.93 3.95
491 503 2.494471 TCTTCTTCTTCCCGCATACGAA 59.506 45.455 0.00 0.00 43.93 3.85
492 504 2.097036 TCTTCTTCTTCCCGCATACGA 58.903 47.619 0.00 0.00 43.93 3.43
493 505 2.579207 TCTTCTTCTTCCCGCATACG 57.421 50.000 0.00 0.00 39.67 3.06
494 506 3.596214 TGTTCTTCTTCTTCCCGCATAC 58.404 45.455 0.00 0.00 0.00 2.39
495 507 3.369471 CCTGTTCTTCTTCTTCCCGCATA 60.369 47.826 0.00 0.00 0.00 3.14
496 508 2.616510 CCTGTTCTTCTTCTTCCCGCAT 60.617 50.000 0.00 0.00 0.00 4.73
497 509 1.270839 CCTGTTCTTCTTCTTCCCGCA 60.271 52.381 0.00 0.00 0.00 5.69
498 510 1.443802 CCTGTTCTTCTTCTTCCCGC 58.556 55.000 0.00 0.00 0.00 6.13
499 511 1.339151 CCCCTGTTCTTCTTCTTCCCG 60.339 57.143 0.00 0.00 0.00 5.14
500 512 1.705745 ACCCCTGTTCTTCTTCTTCCC 59.294 52.381 0.00 0.00 0.00 3.97
501 513 2.372172 TCACCCCTGTTCTTCTTCTTCC 59.628 50.000 0.00 0.00 0.00 3.46
502 514 3.669536 CTCACCCCTGTTCTTCTTCTTC 58.330 50.000 0.00 0.00 0.00 2.87
503 515 2.224646 GCTCACCCCTGTTCTTCTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
504 516 1.349357 GCTCACCCCTGTTCTTCTTCT 59.651 52.381 0.00 0.00 0.00 2.85
505 517 1.349357 AGCTCACCCCTGTTCTTCTTC 59.651 52.381 0.00 0.00 0.00 2.87
506 518 1.072965 CAGCTCACCCCTGTTCTTCTT 59.927 52.381 0.00 0.00 0.00 2.52
507 519 0.689623 CAGCTCACCCCTGTTCTTCT 59.310 55.000 0.00 0.00 0.00 2.85
508 520 0.322008 CCAGCTCACCCCTGTTCTTC 60.322 60.000 0.00 0.00 0.00 2.87
509 521 0.768221 TCCAGCTCACCCCTGTTCTT 60.768 55.000 0.00 0.00 0.00 2.52
510 522 1.152030 TCCAGCTCACCCCTGTTCT 60.152 57.895 0.00 0.00 0.00 3.01
511 523 1.298014 CTCCAGCTCACCCCTGTTC 59.702 63.158 0.00 0.00 0.00 3.18
512 524 2.227036 CCTCCAGCTCACCCCTGTT 61.227 63.158 0.00 0.00 0.00 3.16
513 525 2.608988 CCTCCAGCTCACCCCTGT 60.609 66.667 0.00 0.00 0.00 4.00
514 526 2.227036 AACCTCCAGCTCACCCCTG 61.227 63.158 0.00 0.00 0.00 4.45
515 527 2.208349 AACCTCCAGCTCACCCCT 59.792 61.111 0.00 0.00 0.00 4.79
516 528 1.779061 TTCAACCTCCAGCTCACCCC 61.779 60.000 0.00 0.00 0.00 4.95
517 529 0.322008 CTTCAACCTCCAGCTCACCC 60.322 60.000 0.00 0.00 0.00 4.61
518 530 0.687354 TCTTCAACCTCCAGCTCACC 59.313 55.000 0.00 0.00 0.00 4.02
519 531 2.421619 CTTCTTCAACCTCCAGCTCAC 58.578 52.381 0.00 0.00 0.00 3.51
520 532 1.271054 GCTTCTTCAACCTCCAGCTCA 60.271 52.381 0.00 0.00 0.00 4.26
521 533 1.271054 TGCTTCTTCAACCTCCAGCTC 60.271 52.381 0.00 0.00 0.00 4.09
522 534 0.767375 TGCTTCTTCAACCTCCAGCT 59.233 50.000 0.00 0.00 0.00 4.24
523 535 1.609208 TTGCTTCTTCAACCTCCAGC 58.391 50.000 0.00 0.00 0.00 4.85
524 536 3.439476 CAGATTGCTTCTTCAACCTCCAG 59.561 47.826 0.00 0.00 29.93 3.86
525 537 3.072915 TCAGATTGCTTCTTCAACCTCCA 59.927 43.478 0.00 0.00 29.93 3.86
526 538 3.679389 TCAGATTGCTTCTTCAACCTCC 58.321 45.455 0.00 0.00 29.93 4.30
527 539 4.335037 GGATCAGATTGCTTCTTCAACCTC 59.665 45.833 0.00 0.00 29.93 3.85
528 540 4.268359 GGATCAGATTGCTTCTTCAACCT 58.732 43.478 0.00 0.00 29.93 3.50
529 541 3.064545 CGGATCAGATTGCTTCTTCAACC 59.935 47.826 0.00 0.00 29.93 3.77
530 542 3.686726 ACGGATCAGATTGCTTCTTCAAC 59.313 43.478 0.00 0.00 29.93 3.18
531 543 3.686241 CACGGATCAGATTGCTTCTTCAA 59.314 43.478 0.00 0.00 29.93 2.69
532 544 3.264947 CACGGATCAGATTGCTTCTTCA 58.735 45.455 0.00 0.00 29.93 3.02
533 545 2.031437 GCACGGATCAGATTGCTTCTTC 59.969 50.000 0.00 0.00 29.93 2.87
534 546 2.012673 GCACGGATCAGATTGCTTCTT 58.987 47.619 0.00 0.00 29.93 2.52
535 547 1.661341 GCACGGATCAGATTGCTTCT 58.339 50.000 0.00 0.00 33.90 2.85
536 548 0.302890 CGCACGGATCAGATTGCTTC 59.697 55.000 0.00 0.00 32.56 3.86
537 549 0.391661 ACGCACGGATCAGATTGCTT 60.392 50.000 0.00 0.00 32.56 3.91
538 550 0.807667 GACGCACGGATCAGATTGCT 60.808 55.000 0.00 0.00 32.56 3.91
539 551 0.807667 AGACGCACGGATCAGATTGC 60.808 55.000 0.00 0.00 0.00 3.56
540 552 1.325640 CAAGACGCACGGATCAGATTG 59.674 52.381 0.00 0.00 0.00 2.67
541 553 1.645034 CAAGACGCACGGATCAGATT 58.355 50.000 0.00 0.00 0.00 2.40
542 554 0.807667 GCAAGACGCACGGATCAGAT 60.808 55.000 0.00 0.00 41.79 2.90
543 555 1.446099 GCAAGACGCACGGATCAGA 60.446 57.895 0.00 0.00 41.79 3.27
544 556 3.084579 GCAAGACGCACGGATCAG 58.915 61.111 0.00 0.00 41.79 2.90
553 565 2.480555 CCGTTGGATGCAAGACGC 59.519 61.111 0.00 0.00 42.89 5.19
554 566 2.034879 AGCCGTTGGATGCAAGACG 61.035 57.895 0.00 1.71 35.44 4.18
555 567 0.955428 TCAGCCGTTGGATGCAAGAC 60.955 55.000 0.00 0.00 39.19 3.01
556 568 0.250684 TTCAGCCGTTGGATGCAAGA 60.251 50.000 0.00 0.00 39.19 3.02
557 569 0.597568 TTTCAGCCGTTGGATGCAAG 59.402 50.000 0.00 0.00 39.19 4.01
558 570 0.313672 GTTTCAGCCGTTGGATGCAA 59.686 50.000 0.00 0.00 39.19 4.08
559 571 0.821301 TGTTTCAGCCGTTGGATGCA 60.821 50.000 0.00 0.00 39.19 3.96
560 572 0.313672 TTGTTTCAGCCGTTGGATGC 59.686 50.000 0.00 0.00 39.19 3.91
561 573 2.791383 TTTGTTTCAGCCGTTGGATG 57.209 45.000 0.00 0.00 40.92 3.51
562 574 3.320541 TGAATTTGTTTCAGCCGTTGGAT 59.679 39.130 0.00 0.00 39.44 3.41
563 575 2.690497 TGAATTTGTTTCAGCCGTTGGA 59.310 40.909 0.00 0.00 39.44 3.53
564 576 2.794350 GTGAATTTGTTTCAGCCGTTGG 59.206 45.455 0.00 0.00 44.89 3.77
565 577 3.486841 CAGTGAATTTGTTTCAGCCGTTG 59.513 43.478 0.00 0.00 44.89 4.10
566 578 3.380004 TCAGTGAATTTGTTTCAGCCGTT 59.620 39.130 0.00 0.00 44.89 4.44
567 579 2.948979 TCAGTGAATTTGTTTCAGCCGT 59.051 40.909 0.00 0.00 44.89 5.68
568 580 3.300009 GTCAGTGAATTTGTTTCAGCCG 58.700 45.455 0.00 0.00 44.89 5.52
569 581 3.552890 GGGTCAGTGAATTTGTTTCAGCC 60.553 47.826 0.00 0.00 44.89 4.85
570 582 3.068024 TGGGTCAGTGAATTTGTTTCAGC 59.932 43.478 0.00 0.00 44.89 4.26
571 583 4.580167 TCTGGGTCAGTGAATTTGTTTCAG 59.420 41.667 0.00 0.00 44.89 3.02
572 584 4.531854 TCTGGGTCAGTGAATTTGTTTCA 58.468 39.130 0.00 0.00 42.09 2.69
573 585 5.712152 ATCTGGGTCAGTGAATTTGTTTC 57.288 39.130 0.00 0.00 32.61 2.78
574 586 5.598005 TCAATCTGGGTCAGTGAATTTGTTT 59.402 36.000 0.00 0.00 32.61 2.83
575 587 5.139727 TCAATCTGGGTCAGTGAATTTGTT 58.860 37.500 0.00 0.00 32.61 2.83
576 588 4.728772 TCAATCTGGGTCAGTGAATTTGT 58.271 39.130 0.00 0.00 32.61 2.83
577 589 5.242393 AGTTCAATCTGGGTCAGTGAATTTG 59.758 40.000 0.00 0.00 32.14 2.32
578 590 5.388654 AGTTCAATCTGGGTCAGTGAATTT 58.611 37.500 0.00 0.00 32.14 1.82
579 591 4.990526 AGTTCAATCTGGGTCAGTGAATT 58.009 39.130 0.00 0.00 32.14 2.17
580 592 4.647564 AGTTCAATCTGGGTCAGTGAAT 57.352 40.909 0.00 0.00 32.14 2.57
581 593 4.141505 TGAAGTTCAATCTGGGTCAGTGAA 60.142 41.667 2.20 0.00 32.61 3.18
582 594 3.390967 TGAAGTTCAATCTGGGTCAGTGA 59.609 43.478 2.20 0.00 32.61 3.41
583 595 3.743521 TGAAGTTCAATCTGGGTCAGTG 58.256 45.455 2.20 0.00 32.61 3.66
584 596 4.437682 TTGAAGTTCAATCTGGGTCAGT 57.562 40.909 14.35 0.00 30.26 3.41
595 607 5.607477 AGGTGTAAGACGATTGAAGTTCAA 58.393 37.500 20.14 20.14 41.09 2.69
596 608 5.209818 AGGTGTAAGACGATTGAAGTTCA 57.790 39.130 0.08 0.08 0.00 3.18
597 609 5.288952 GCTAGGTGTAAGACGATTGAAGTTC 59.711 44.000 0.00 0.00 0.00 3.01
598 610 5.169295 GCTAGGTGTAAGACGATTGAAGTT 58.831 41.667 0.00 0.00 0.00 2.66
599 611 4.219944 TGCTAGGTGTAAGACGATTGAAGT 59.780 41.667 0.00 0.00 0.00 3.01
600 612 4.744570 TGCTAGGTGTAAGACGATTGAAG 58.255 43.478 0.00 0.00 0.00 3.02
601 613 4.794278 TGCTAGGTGTAAGACGATTGAA 57.206 40.909 0.00 0.00 0.00 2.69
602 614 4.794278 TTGCTAGGTGTAAGACGATTGA 57.206 40.909 0.00 0.00 0.00 2.57
603 615 4.508124 GGATTGCTAGGTGTAAGACGATTG 59.492 45.833 0.00 0.00 0.00 2.67
604 616 4.443034 GGGATTGCTAGGTGTAAGACGATT 60.443 45.833 0.00 0.00 0.00 3.34
605 617 3.069729 GGGATTGCTAGGTGTAAGACGAT 59.930 47.826 0.00 0.00 0.00 3.73
606 618 2.429610 GGGATTGCTAGGTGTAAGACGA 59.570 50.000 0.00 0.00 0.00 4.20
607 619 2.431057 AGGGATTGCTAGGTGTAAGACG 59.569 50.000 0.00 0.00 0.00 4.18
608 620 4.489306 AAGGGATTGCTAGGTGTAAGAC 57.511 45.455 0.00 0.00 0.00 3.01
609 621 6.824958 AATAAGGGATTGCTAGGTGTAAGA 57.175 37.500 0.00 0.00 0.00 2.10
610 622 7.881775 AAAATAAGGGATTGCTAGGTGTAAG 57.118 36.000 0.00 0.00 0.00 2.34
611 623 9.569122 GATAAAATAAGGGATTGCTAGGTGTAA 57.431 33.333 0.00 0.00 0.00 2.41
612 624 8.945193 AGATAAAATAAGGGATTGCTAGGTGTA 58.055 33.333 0.00 0.00 0.00 2.90
613 625 7.816411 AGATAAAATAAGGGATTGCTAGGTGT 58.184 34.615 0.00 0.00 0.00 4.16
614 626 8.697507 AAGATAAAATAAGGGATTGCTAGGTG 57.302 34.615 0.00 0.00 0.00 4.00
687 699 3.073356 TGGAGGGGACGTTCAGTATTTTT 59.927 43.478 0.00 0.00 0.00 1.94
688 700 2.640826 TGGAGGGGACGTTCAGTATTTT 59.359 45.455 0.00 0.00 0.00 1.82
689 701 2.236395 CTGGAGGGGACGTTCAGTATTT 59.764 50.000 0.00 0.00 44.18 1.40
690 702 1.831736 CTGGAGGGGACGTTCAGTATT 59.168 52.381 0.00 0.00 44.18 1.89
691 703 1.486211 CTGGAGGGGACGTTCAGTAT 58.514 55.000 0.00 0.00 44.18 2.12
692 704 2.971676 CTGGAGGGGACGTTCAGTA 58.028 57.895 0.00 0.00 44.18 2.74
693 705 3.793060 CTGGAGGGGACGTTCAGT 58.207 61.111 0.00 0.00 44.18 3.41
695 707 1.911766 GACCTGGAGGGGACGTTCA 60.912 63.158 0.00 0.00 40.27 3.18
696 708 0.324091 TAGACCTGGAGGGGACGTTC 60.324 60.000 0.00 0.00 40.27 3.95
697 709 0.338814 ATAGACCTGGAGGGGACGTT 59.661 55.000 0.00 0.00 40.27 3.99
698 710 1.229131 TATAGACCTGGAGGGGACGT 58.771 55.000 0.00 0.00 40.27 4.34
699 711 2.376695 TTATAGACCTGGAGGGGACG 57.623 55.000 0.00 0.00 40.27 4.79
700 712 3.835395 CAGATTATAGACCTGGAGGGGAC 59.165 52.174 0.00 0.00 40.27 4.46
701 713 3.471306 ACAGATTATAGACCTGGAGGGGA 59.529 47.826 0.00 0.00 40.27 4.81
702 714 3.835395 GACAGATTATAGACCTGGAGGGG 59.165 52.174 0.00 0.00 40.27 4.79
703 715 4.282195 GTGACAGATTATAGACCTGGAGGG 59.718 50.000 0.00 0.00 40.27 4.30
704 716 4.282195 GGTGACAGATTATAGACCTGGAGG 59.718 50.000 0.00 0.00 42.17 4.30
705 717 4.895889 TGGTGACAGATTATAGACCTGGAG 59.104 45.833 0.00 0.00 35.01 3.86
706 718 4.878968 TGGTGACAGATTATAGACCTGGA 58.121 43.478 0.00 0.00 35.01 3.86
721 733 1.415289 TTGCAAAATGGCATGGTGACA 59.585 42.857 13.30 8.52 44.48 3.58
722 734 2.166821 TTGCAAAATGGCATGGTGAC 57.833 45.000 13.30 6.52 44.48 3.67
723 735 2.104451 ACTTTGCAAAATGGCATGGTGA 59.896 40.909 13.84 0.00 44.48 4.02
724 736 2.224549 CACTTTGCAAAATGGCATGGTG 59.775 45.455 12.70 10.51 44.48 4.17
725 737 2.104451 TCACTTTGCAAAATGGCATGGT 59.896 40.909 19.53 5.77 44.48 3.55
726 738 2.768698 TCACTTTGCAAAATGGCATGG 58.231 42.857 19.53 5.14 44.48 3.66
727 739 3.810941 ACTTCACTTTGCAAAATGGCATG 59.189 39.130 19.53 10.15 44.48 4.06
728 740 4.075963 ACTTCACTTTGCAAAATGGCAT 57.924 36.364 19.53 3.57 44.48 4.40
729 741 3.540314 ACTTCACTTTGCAAAATGGCA 57.460 38.095 19.53 6.97 43.19 4.92
730 742 4.620982 ACTACTTCACTTTGCAAAATGGC 58.379 39.130 19.53 0.00 0.00 4.40
731 743 8.641499 TTTTACTACTTCACTTTGCAAAATGG 57.359 30.769 19.53 7.91 0.00 3.16
783 795 4.095483 CCATGCTATTTCTTGTCGCTTTCT 59.905 41.667 0.00 0.00 0.00 2.52
806 818 3.576982 TCGTCTCCTCTCTCTCTATCTCC 59.423 52.174 0.00 0.00 0.00 3.71
841 853 2.436109 GGGAGTGGCAGCCTTTCA 59.564 61.111 14.15 0.00 0.00 2.69
929 962 4.660938 GTGTGGGTGTGGGGGAGC 62.661 72.222 0.00 0.00 0.00 4.70
930 963 3.966543 GGTGTGGGTGTGGGGGAG 61.967 72.222 0.00 0.00 0.00 4.30
931 964 4.845307 TGGTGTGGGTGTGGGGGA 62.845 66.667 0.00 0.00 0.00 4.81
932 965 4.596585 GTGGTGTGGGTGTGGGGG 62.597 72.222 0.00 0.00 0.00 5.40
933 966 4.947147 CGTGGTGTGGGTGTGGGG 62.947 72.222 0.00 0.00 0.00 4.96
1494 1550 1.202806 CCAACCTCTGTGGAGAAGCAA 60.203 52.381 2.23 0.00 41.86 3.91
1815 1903 2.032681 GTGGGAGTGGGAGTGTGC 59.967 66.667 0.00 0.00 0.00 4.57
2155 2315 1.065273 GATGATGGGCAGCAAAGCG 59.935 57.895 0.00 0.00 34.64 4.68
2177 2345 5.422012 AGGTAATTTAGGAGGGCAAATGTTG 59.578 40.000 0.00 0.00 0.00 3.33
2294 2678 5.819901 AGATGCAGTAGAGTTAGAAAATGGC 59.180 40.000 0.00 0.00 0.00 4.40
2412 4090 0.756442 AAGCACTGCAAGGGAGCAAA 60.756 50.000 3.30 0.00 43.23 3.68
2413 4091 0.110295 TAAGCACTGCAAGGGAGCAA 59.890 50.000 3.30 0.00 43.23 3.91
2415 4093 0.807496 CTTAAGCACTGCAAGGGAGC 59.193 55.000 3.30 0.00 43.23 4.70
2416 4094 1.457346 CCTTAAGCACTGCAAGGGAG 58.543 55.000 10.94 0.00 43.23 4.30
2417 4095 0.609131 GCCTTAAGCACTGCAAGGGA 60.609 55.000 17.64 0.00 43.23 4.20
2418 4096 1.598701 GGCCTTAAGCACTGCAAGGG 61.599 60.000 17.64 10.09 46.50 3.95
2419 4097 0.895100 TGGCCTTAAGCACTGCAAGG 60.895 55.000 13.53 13.53 46.50 3.61
2420 4098 1.180029 ATGGCCTTAAGCACTGCAAG 58.820 50.000 3.32 0.00 46.50 4.01
2424 4122 3.201290 CACTCTATGGCCTTAAGCACTG 58.799 50.000 3.32 0.00 46.50 3.66
2426 4124 3.198872 GACACTCTATGGCCTTAAGCAC 58.801 50.000 3.32 0.00 46.50 4.40
2599 4310 5.059833 GTCTGATCCTCACCCATTCATAAC 58.940 45.833 0.00 0.00 0.00 1.89
2615 4333 6.518208 AGAGTACAGTGGTAAAGTCTGATC 57.482 41.667 0.00 0.00 33.93 2.92
2679 4403 8.696374 TGAGGAGATGGTTGTTCTAACTAATAG 58.304 37.037 0.00 0.00 0.00 1.73
2680 4404 8.603898 TGAGGAGATGGTTGTTCTAACTAATA 57.396 34.615 0.00 0.00 0.00 0.98
2681 4405 7.496346 TGAGGAGATGGTTGTTCTAACTAAT 57.504 36.000 0.00 0.00 0.00 1.73
2830 4629 6.510317 GCCTTCAAAGACGAGCAATATTAGTC 60.510 42.308 0.00 0.00 0.00 2.59
2912 4711 3.000819 TGGTAGTCCCCTGGCGTG 61.001 66.667 0.00 0.00 0.00 5.34
2913 4712 3.001406 GTGGTAGTCCCCTGGCGT 61.001 66.667 0.00 0.00 0.00 5.68
3048 4847 4.560035 CCTCGTACGTATACTTGTGTTTGG 59.440 45.833 16.05 0.00 0.00 3.28
3061 4860 0.679002 AGCAAGGCTCCTCGTACGTA 60.679 55.000 16.05 0.00 30.62 3.57
3062 4861 1.977544 AGCAAGGCTCCTCGTACGT 60.978 57.895 16.05 0.00 30.62 3.57
3063 4862 2.885861 AGCAAGGCTCCTCGTACG 59.114 61.111 9.53 9.53 30.62 3.67
3170 4970 0.400815 TTGGATATGGGCTACGGGGT 60.401 55.000 0.00 0.00 0.00 4.95
3252 5052 2.268920 CTGGTCGTGGGGTCATGG 59.731 66.667 0.00 0.00 0.00 3.66
3255 5055 1.608336 CTACCTGGTCGTGGGGTCA 60.608 63.158 0.63 0.00 34.86 4.02
3520 5320 2.162208 CGCTAGGTTAACCACTACGACA 59.838 50.000 26.26 0.58 38.89 4.35
3765 5565 2.883828 CGCCGGATTCCTAGCCCAT 61.884 63.158 5.05 0.00 0.00 4.00
3927 5732 0.976641 AACTGAGGGCGTTCAGATCA 59.023 50.000 20.24 0.00 45.95 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.