Multiple sequence alignment - TraesCS4A01G122800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G122800 chr4A 100.000 4411 0 0 1 4411 152737727 152742137 0.000000e+00 8146.0
1 TraesCS4A01G122800 chr4A 95.437 263 12 0 577 839 78157368 78157630 1.900000e-113 420.0
2 TraesCS4A01G122800 chr4A 93.502 277 15 3 564 839 542603315 542603041 4.110000e-110 409.0
3 TraesCS4A01G122800 chr4B 96.949 1442 40 3 838 2279 400399451 400400888 0.000000e+00 2416.0
4 TraesCS4A01G122800 chr4B 94.169 1372 60 11 2331 3682 400400893 400402264 0.000000e+00 2073.0
5 TraesCS4A01G122800 chr4B 96.970 66 1 1 2278 2343 20290903 20290839 4.660000e-20 110.0
6 TraesCS4A01G122800 chr4B 96.923 65 2 0 2278 2342 321732485 321732549 4.660000e-20 110.0
7 TraesCS4A01G122800 chr4B 93.151 73 3 2 2278 2348 223382910 223382838 6.030000e-19 106.0
8 TraesCS4A01G122800 chr4D 96.214 1479 41 5 2820 4295 320208905 320207439 0.000000e+00 2407.0
9 TraesCS4A01G122800 chr4D 95.534 1433 34 8 863 2279 320210672 320209254 0.000000e+00 2265.0
10 TraesCS4A01G122800 chr4D 95.614 342 13 2 2331 2671 320209249 320208909 8.340000e-152 547.0
11 TraesCS4A01G122800 chr4D 89.189 185 20 0 39 223 197025907 197025723 9.540000e-57 231.0
12 TraesCS4A01G122800 chr7A 95.172 580 25 2 1 580 197153907 197153331 0.000000e+00 913.0
13 TraesCS4A01G122800 chr7A 94.585 277 14 1 571 847 506291315 506291590 1.130000e-115 427.0
14 TraesCS4A01G122800 chr7A 95.785 261 11 0 579 839 108819420 108819680 5.270000e-114 422.0
15 TraesCS4A01G122800 chr7A 95.113 266 13 0 574 839 599647348 599647083 1.900000e-113 420.0
16 TraesCS4A01G122800 chr6A 94.948 574 29 0 1 574 33409563 33410136 0.000000e+00 900.0
17 TraesCS4A01G122800 chr6A 95.113 266 13 0 574 839 374662183 374662448 1.900000e-113 420.0
18 TraesCS4A01G122800 chr6A 94.403 268 15 0 576 843 614497195 614497462 3.170000e-111 412.0
19 TraesCS4A01G122800 chr6A 100.000 60 0 0 2278 2337 127176427 127176486 1.300000e-20 111.0
20 TraesCS4A01G122800 chr3A 96.401 389 14 0 1 389 103593745 103594133 3.720000e-180 641.0
21 TraesCS4A01G122800 chr3A 95.785 261 11 0 579 839 522717637 522717897 5.270000e-114 422.0
22 TraesCS4A01G122800 chr3A 94.388 196 7 3 387 580 103605309 103605502 9.270000e-77 298.0
23 TraesCS4A01G122800 chr3A 95.652 115 5 0 4290 4404 82346418 82346304 7.530000e-43 185.0
24 TraesCS4A01G122800 chr3A 96.970 66 2 0 2278 2343 208067566 208067501 1.300000e-20 111.0
25 TraesCS4A01G122800 chr2D 96.341 328 11 1 235 562 432025643 432025969 5.020000e-149 538.0
26 TraesCS4A01G122800 chr2D 93.836 146 8 1 2671 2816 27519793 27519649 7.430000e-53 219.0
27 TraesCS4A01G122800 chr2A 93.484 353 18 5 226 574 735575775 735576126 1.820000e-143 520.0
28 TraesCS4A01G122800 chr2A 85.093 322 33 12 266 578 536189744 536189429 9.210000e-82 315.0
29 TraesCS4A01G122800 chr5A 95.539 269 11 1 576 844 442308405 442308672 3.150000e-116 429.0
30 TraesCS4A01G122800 chr5A 93.913 115 7 0 4287 4401 64655941 64655827 1.630000e-39 174.0
31 TraesCS4A01G122800 chr5A 83.784 74 9 3 3816 3887 665597698 665597626 2.850000e-07 67.6
32 TraesCS4A01G122800 chr6B 89.474 323 24 5 259 580 139447356 139447043 2.470000e-107 399.0
33 TraesCS4A01G122800 chr6B 91.597 119 8 2 4287 4404 583625360 583625243 3.530000e-36 163.0
34 TraesCS4A01G122800 chr5B 93.213 221 12 3 357 574 65726352 65726572 5.500000e-84 322.0
35 TraesCS4A01G122800 chr5B 79.124 388 44 22 219 574 270666986 270666604 2.650000e-57 233.0
36 TraesCS4A01G122800 chr5B 88.435 147 17 0 5 151 400549505 400549359 1.260000e-40 178.0
37 TraesCS4A01G122800 chr5B 94.495 109 6 0 4294 4402 322860996 322861104 7.590000e-38 169.0
38 TraesCS4A01G122800 chr5B 94.286 70 3 1 2278 2346 476799402 476799471 6.030000e-19 106.0
39 TraesCS4A01G122800 chr5B 88.043 92 6 4 2278 2368 239391923 239392010 2.170000e-18 104.0
40 TraesCS4A01G122800 chr5B 100.000 56 0 0 2278 2333 382894306 382894361 2.170000e-18 104.0
41 TraesCS4A01G122800 chr7B 91.026 234 17 4 343 574 279832768 279832537 3.310000e-81 313.0
42 TraesCS4A01G122800 chr7B 93.220 118 8 0 4287 4404 34609641 34609758 1.630000e-39 174.0
43 TraesCS4A01G122800 chr1A 92.157 204 13 3 371 574 567999207 567999007 7.220000e-73 285.0
44 TraesCS4A01G122800 chr1A 96.923 65 0 1 2278 2342 130343556 130343618 1.680000e-19 108.0
45 TraesCS4A01G122800 chr5D 94.737 114 6 0 4290 4403 560243046 560242933 1.260000e-40 178.0
46 TraesCS4A01G122800 chr5D 91.736 121 10 0 4291 4411 313637594 313637474 7.590000e-38 169.0
47 TraesCS4A01G122800 chr3B 94.495 109 6 0 4294 4402 125619486 125619594 7.590000e-38 169.0
48 TraesCS4A01G122800 chr1D 93.043 115 7 1 4290 4404 366680751 366680638 2.730000e-37 167.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G122800 chr4A 152737727 152742137 4410 False 8146.000000 8146 100.000000 1 4411 1 chr4A.!!$F2 4410
1 TraesCS4A01G122800 chr4B 400399451 400402264 2813 False 2244.500000 2416 95.559000 838 3682 2 chr4B.!!$F2 2844
2 TraesCS4A01G122800 chr4D 320207439 320210672 3233 True 1739.666667 2407 95.787333 863 4295 3 chr4D.!!$R2 3432
3 TraesCS4A01G122800 chr7A 197153331 197153907 576 True 913.000000 913 95.172000 1 580 1 chr7A.!!$R1 579
4 TraesCS4A01G122800 chr6A 33409563 33410136 573 False 900.000000 900 94.948000 1 574 1 chr6A.!!$F1 573

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
964 973 0.026803 GCTGCGATCGATCAACCAAC 59.973 55.0 24.4 10.06 0.0 3.77 F
967 976 0.931005 GCGATCGATCAACCAACTCC 59.069 55.0 24.4 0.00 0.0 3.85 F
2293 2312 0.253020 TTAGACCCTTCCCTGGACCC 60.253 60.0 0.0 0.00 0.0 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2015 2034 0.108585 TATTCCTCGCAATGGCCTCC 59.891 55.0 3.32 0.0 36.38 4.30 R
2941 2966 0.830648 GTCTCCCGAATGACCCATGA 59.169 55.0 0.00 0.0 0.00 3.07 R
3757 3796 0.107214 TCGCAAATGTCATCCCTCCC 60.107 55.0 0.00 0.0 0.00 4.30 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 75 2.041115 CGTCCTGCTCTCGTCTCCA 61.041 63.158 0.00 0.00 0.00 3.86
76 77 0.102120 GTCCTGCTCTCGTCTCCATG 59.898 60.000 0.00 0.00 0.00 3.66
501 502 2.485966 ATGCTGGAGGGATGTAGACT 57.514 50.000 0.00 0.00 0.00 3.24
513 514 5.604231 AGGGATGTAGACTATCAGATTGCAA 59.396 40.000 0.00 0.00 0.00 4.08
566 567 6.729100 TCCACCCTCTCTTTCTTTTATAGTGA 59.271 38.462 0.00 0.00 0.00 3.41
587 588 7.738847 AGTGATAGTAGACTAGTACTTCCTCC 58.261 42.308 0.00 0.00 34.91 4.30
588 589 7.347748 AGTGATAGTAGACTAGTACTTCCTCCA 59.652 40.741 0.00 0.00 34.91 3.86
589 590 8.158789 GTGATAGTAGACTAGTACTTCCTCCAT 58.841 40.741 0.00 0.00 34.91 3.41
590 591 8.725256 TGATAGTAGACTAGTACTTCCTCCATT 58.275 37.037 0.00 0.00 34.91 3.16
591 592 9.577222 GATAGTAGACTAGTACTTCCTCCATTT 57.423 37.037 0.00 0.00 34.91 2.32
592 593 9.939424 ATAGTAGACTAGTACTTCCTCCATTTT 57.061 33.333 0.00 0.00 34.91 1.82
593 594 8.667592 AGTAGACTAGTACTTCCTCCATTTTT 57.332 34.615 0.00 0.00 28.15 1.94
594 595 9.765295 AGTAGACTAGTACTTCCTCCATTTTTA 57.235 33.333 0.00 0.00 28.15 1.52
604 605 8.056407 ACTTCCTCCATTTTTATTTACTCTGC 57.944 34.615 0.00 0.00 0.00 4.26
605 606 7.669722 ACTTCCTCCATTTTTATTTACTCTGCA 59.330 33.333 0.00 0.00 0.00 4.41
606 607 8.593945 TTCCTCCATTTTTATTTACTCTGCAT 57.406 30.769 0.00 0.00 0.00 3.96
607 608 9.693739 TTCCTCCATTTTTATTTACTCTGCATA 57.306 29.630 0.00 0.00 0.00 3.14
608 609 9.866655 TCCTCCATTTTTATTTACTCTGCATAT 57.133 29.630 0.00 0.00 0.00 1.78
621 622 9.719355 TTTACTCTGCATATTAAAGTTGACTGA 57.281 29.630 0.00 0.00 0.00 3.41
622 623 9.719355 TTACTCTGCATATTAAAGTTGACTGAA 57.281 29.630 0.00 0.00 0.00 3.02
623 624 8.261492 ACTCTGCATATTAAAGTTGACTGAAG 57.739 34.615 0.00 0.00 0.00 3.02
624 625 7.880195 ACTCTGCATATTAAAGTTGACTGAAGT 59.120 33.333 0.00 0.00 0.00 3.01
625 626 8.256611 TCTGCATATTAAAGTTGACTGAAGTC 57.743 34.615 3.41 3.41 44.97 3.01
740 741 9.868277 TGAATTTAGTGTTGTTGATTTGTTCTT 57.132 25.926 0.00 0.00 0.00 2.52
742 743 9.651913 AATTTAGTGTTGTTGATTTGTTCTTGT 57.348 25.926 0.00 0.00 0.00 3.16
800 801 6.330278 AAGTTTGTAAAGCTTGACTTTGACC 58.670 36.000 15.19 0.00 45.94 4.02
801 802 6.071616 AAGTTTGTAAAGCTTGACTTTGACCA 60.072 34.615 15.19 0.00 45.94 4.02
802 803 7.524698 AAGTTTGTAAAGCTTGACTTTGACCAA 60.525 33.333 15.19 0.00 45.94 3.67
805 806 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
806 807 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
807 808 4.164843 AGCTTGACTTTGACCAAACCTA 57.835 40.909 0.00 0.00 0.00 3.08
808 809 4.532834 AGCTTGACTTTGACCAAACCTAA 58.467 39.130 0.00 0.00 0.00 2.69
809 810 5.140454 AGCTTGACTTTGACCAAACCTAAT 58.860 37.500 0.00 0.00 0.00 1.73
810 811 6.303839 AGCTTGACTTTGACCAAACCTAATA 58.696 36.000 0.00 0.00 0.00 0.98
811 812 6.948309 AGCTTGACTTTGACCAAACCTAATAT 59.052 34.615 0.00 0.00 0.00 1.28
812 813 7.029563 GCTTGACTTTGACCAAACCTAATATG 58.970 38.462 0.00 0.00 0.00 1.78
813 814 6.509418 TGACTTTGACCAAACCTAATATGC 57.491 37.500 0.00 0.00 0.00 3.14
814 815 5.123186 TGACTTTGACCAAACCTAATATGCG 59.877 40.000 0.00 0.00 0.00 4.73
815 816 5.250200 ACTTTGACCAAACCTAATATGCGA 58.750 37.500 0.00 0.00 0.00 5.10
816 817 5.708230 ACTTTGACCAAACCTAATATGCGAA 59.292 36.000 0.00 0.00 0.00 4.70
817 818 5.554822 TTGACCAAACCTAATATGCGAAC 57.445 39.130 0.00 0.00 0.00 3.95
818 819 4.839121 TGACCAAACCTAATATGCGAACT 58.161 39.130 0.00 0.00 0.00 3.01
819 820 5.979993 TGACCAAACCTAATATGCGAACTA 58.020 37.500 0.00 0.00 0.00 2.24
820 821 6.408035 TGACCAAACCTAATATGCGAACTAA 58.592 36.000 0.00 0.00 0.00 2.24
821 822 6.879993 TGACCAAACCTAATATGCGAACTAAA 59.120 34.615 0.00 0.00 0.00 1.85
822 823 7.554835 TGACCAAACCTAATATGCGAACTAAAT 59.445 33.333 0.00 0.00 0.00 1.40
823 824 8.967664 ACCAAACCTAATATGCGAACTAAATA 57.032 30.769 0.00 0.00 0.00 1.40
824 825 9.398538 ACCAAACCTAATATGCGAACTAAATAA 57.601 29.630 0.00 0.00 0.00 1.40
829 830 9.925268 ACCTAATATGCGAACTAAATAAAAACG 57.075 29.630 0.00 0.00 0.00 3.60
830 831 9.377383 CCTAATATGCGAACTAAATAAAAACGG 57.623 33.333 0.00 0.00 0.00 4.44
833 834 5.285798 TGCGAACTAAATAAAAACGGAGG 57.714 39.130 0.00 0.00 0.00 4.30
834 835 4.154556 TGCGAACTAAATAAAAACGGAGGG 59.845 41.667 0.00 0.00 0.00 4.30
835 836 4.392754 GCGAACTAAATAAAAACGGAGGGA 59.607 41.667 0.00 0.00 0.00 4.20
836 837 5.446875 GCGAACTAAATAAAAACGGAGGGAG 60.447 44.000 0.00 0.00 0.00 4.30
861 862 2.396590 TTTATCAGAACCGCCCTGAC 57.603 50.000 0.00 0.00 42.68 3.51
897 898 3.370978 GCAGCACTTCGCAATTTAGAGTA 59.629 43.478 0.00 0.00 46.13 2.59
898 899 4.034510 GCAGCACTTCGCAATTTAGAGTAT 59.965 41.667 0.00 0.00 46.13 2.12
920 929 9.628500 AGTATAGTTCTCAAAAGTCAAAAGGTT 57.372 29.630 0.00 0.00 0.00 3.50
944 953 1.870055 GCACAAGCACATGGTCCCAG 61.870 60.000 0.00 0.00 41.58 4.45
955 964 3.838271 GTCCCAGGCTGCGATCGA 61.838 66.667 21.57 3.01 0.00 3.59
964 973 0.026803 GCTGCGATCGATCAACCAAC 59.973 55.000 24.40 10.06 0.00 3.77
967 976 0.931005 GCGATCGATCAACCAACTCC 59.069 55.000 24.40 0.00 0.00 3.85
1438 1447 1.136695 CCAAGTGAGCTAGCTCTCCTG 59.863 57.143 37.42 31.98 43.12 3.86
1491 1500 3.573967 AGTAAAATCCAACTTGGCTGGTG 59.426 43.478 2.52 0.00 37.47 4.17
1503 1512 1.133513 TGGCTGGTGGTCAATCTGTTT 60.134 47.619 0.00 0.00 0.00 2.83
1520 1533 5.458891 TCTGTTTAGTTTCTCAGTAGACGC 58.541 41.667 0.00 0.00 0.00 5.19
1534 1547 8.521176 TCTCAGTAGACGCTAATTAAAACTTCT 58.479 33.333 0.00 0.00 0.00 2.85
1577 1590 8.756864 GGAAAATCTCACTCGAACTCAATATAC 58.243 37.037 0.00 0.00 0.00 1.47
1584 1597 3.997021 CTCGAACTCAATATACCCATGCC 59.003 47.826 0.00 0.00 0.00 4.40
1597 1610 2.827921 ACCCATGCCAGTGAAATTCTTC 59.172 45.455 0.00 0.00 0.00 2.87
1638 1651 6.930164 TGAAACACAAGATTTGCTGCAAATAT 59.070 30.769 33.33 29.12 43.05 1.28
1722 1741 7.253905 ACACCTATGTTTGTACTACCTGAAT 57.746 36.000 0.00 0.00 34.46 2.57
1886 1905 3.088532 ACAGAAGCTCTCTCGTCTCATT 58.911 45.455 0.00 0.00 29.07 2.57
2189 2208 8.587952 ACTTACAGCCAATATTTGTTGTTTTC 57.412 30.769 13.05 0.00 31.69 2.29
2279 2298 5.705609 TGAAAAACCAGGCAGAATTAGAC 57.294 39.130 0.00 0.00 0.00 2.59
2280 2299 4.522789 TGAAAAACCAGGCAGAATTAGACC 59.477 41.667 0.00 0.00 0.00 3.85
2281 2300 2.808906 AACCAGGCAGAATTAGACCC 57.191 50.000 0.00 0.00 0.00 4.46
2282 2301 1.972588 ACCAGGCAGAATTAGACCCT 58.027 50.000 0.00 0.00 0.00 4.34
2283 2302 2.279173 ACCAGGCAGAATTAGACCCTT 58.721 47.619 0.00 0.00 0.00 3.95
2284 2303 2.239907 ACCAGGCAGAATTAGACCCTTC 59.760 50.000 0.00 0.00 0.00 3.46
2285 2304 2.422093 CCAGGCAGAATTAGACCCTTCC 60.422 54.545 0.00 0.00 0.00 3.46
2286 2305 1.847088 AGGCAGAATTAGACCCTTCCC 59.153 52.381 0.00 0.00 0.00 3.97
2287 2306 1.847088 GGCAGAATTAGACCCTTCCCT 59.153 52.381 0.00 0.00 0.00 4.20
2288 2307 2.422093 GGCAGAATTAGACCCTTCCCTG 60.422 54.545 0.00 0.00 0.00 4.45
2289 2308 2.422093 GCAGAATTAGACCCTTCCCTGG 60.422 54.545 0.00 0.00 0.00 4.45
2290 2309 3.115390 CAGAATTAGACCCTTCCCTGGA 58.885 50.000 0.00 0.00 0.00 3.86
2291 2310 3.116174 AGAATTAGACCCTTCCCTGGAC 58.884 50.000 0.00 0.00 0.00 4.02
2292 2311 1.894699 ATTAGACCCTTCCCTGGACC 58.105 55.000 0.00 0.00 0.00 4.46
2293 2312 0.253020 TTAGACCCTTCCCTGGACCC 60.253 60.000 0.00 0.00 0.00 4.46
2294 2313 1.160289 TAGACCCTTCCCTGGACCCT 61.160 60.000 0.00 0.00 0.00 4.34
2295 2314 2.204151 ACCCTTCCCTGGACCCTG 60.204 66.667 0.00 0.00 0.00 4.45
2296 2315 3.732849 CCCTTCCCTGGACCCTGC 61.733 72.222 0.00 0.00 0.00 4.85
2297 2316 4.101448 CCTTCCCTGGACCCTGCG 62.101 72.222 0.00 0.00 0.00 5.18
2298 2317 4.785453 CTTCCCTGGACCCTGCGC 62.785 72.222 0.00 0.00 0.00 6.09
2323 2342 3.558674 GAGCTACATGCACCAGGTT 57.441 52.632 0.00 0.00 45.94 3.50
2324 2343 1.089920 GAGCTACATGCACCAGGTTG 58.910 55.000 0.00 0.00 45.94 3.77
2325 2344 0.962356 AGCTACATGCACCAGGTTGC 60.962 55.000 8.03 8.03 44.17 4.17
2326 2345 1.937546 GCTACATGCACCAGGTTGCC 61.938 60.000 10.46 0.00 39.88 4.52
2327 2346 1.304052 TACATGCACCAGGTTGCCC 60.304 57.895 10.46 0.00 42.25 5.36
2328 2347 1.788518 TACATGCACCAGGTTGCCCT 61.789 55.000 10.46 0.00 42.25 5.19
2329 2348 1.909781 CATGCACCAGGTTGCCCTT 60.910 57.895 10.46 0.00 42.25 3.95
2403 2422 7.548075 GTCTTAAATCCTCTTTGGTATCAACGA 59.452 37.037 0.00 0.00 37.07 3.85
2433 2452 7.230510 TGCATTCTAGTTAATTTGTGTTCCTGT 59.769 33.333 0.00 0.00 0.00 4.00
2643 2667 9.049523 CCTCCCATAATAATGATATGATTCACG 57.950 37.037 0.00 0.00 34.84 4.35
2644 2668 8.962884 TCCCATAATAATGATATGATTCACGG 57.037 34.615 0.00 0.00 34.84 4.94
2672 2696 5.711036 ACACTAGAAGTCTTCGGTCAATAGT 59.289 40.000 6.94 5.70 34.02 2.12
2682 2706 3.035363 TCGGTCAATAGTAGGGATGCAA 58.965 45.455 0.00 0.00 0.00 4.08
2684 2708 3.181465 CGGTCAATAGTAGGGATGCAAGT 60.181 47.826 0.00 0.00 0.00 3.16
2723 2747 5.129815 TCCCGCATAAGTAGGAAAATAGTGT 59.870 40.000 0.00 0.00 0.00 3.55
2726 2750 7.496591 CCCGCATAAGTAGGAAAATAGTGTAAA 59.503 37.037 0.00 0.00 0.00 2.01
2782 2806 9.778993 GTTAAGTTGATCTGTGTATACTACGAA 57.221 33.333 4.17 0.00 0.00 3.85
2787 2811 2.615447 TCTGTGTATACTACGAAGCGGG 59.385 50.000 4.17 0.00 0.00 6.13
2788 2812 2.615447 CTGTGTATACTACGAAGCGGGA 59.385 50.000 4.17 0.00 0.00 5.14
2841 2865 1.276622 AGCATCAAGGGTACTTCCGT 58.723 50.000 0.00 0.00 33.81 4.69
2908 2933 2.525368 GGGAAGTGTTTTGCCTGGTAT 58.475 47.619 0.00 0.00 0.00 2.73
2941 2966 7.458170 TCTTAGATAAGTTTGAGGAAAGGAGGT 59.542 37.037 0.00 0.00 34.93 3.85
3007 3032 7.560991 TCATATGGGCACTAAGATGAATTTGTT 59.439 33.333 2.13 0.00 0.00 2.83
3145 3177 7.992608 TCATATGTTAGCATCCACAGTATGTTT 59.007 33.333 1.90 0.00 41.46 2.83
3203 3235 7.745620 ATAAAGTCTTAATTTGATAGGGGCG 57.254 36.000 0.00 0.00 0.00 6.13
3238 3270 5.280945 TGAAAGAAACGGAAATTGCTCTTG 58.719 37.500 0.00 0.00 0.00 3.02
3243 3275 7.681939 AGAAACGGAAATTGCTCTTGTTATA 57.318 32.000 0.00 0.00 0.00 0.98
3534 3566 7.007995 CCACGTTGTTTTACTTTGAAGTTTCTC 59.992 37.037 1.20 0.00 40.37 2.87
3543 3575 2.363788 TGAAGTTTCTCCGGTCATCG 57.636 50.000 0.00 0.00 38.88 3.84
3595 3634 3.474007 GACGAACGTCAGCTGAGAA 57.526 52.632 18.89 0.00 44.02 2.87
3646 3685 3.163594 CAGTTTCGAACGATGGCAATTC 58.836 45.455 0.00 0.00 36.23 2.17
3690 3729 3.068024 TGAAGAAACTGCCATGTTGTTCC 59.932 43.478 0.00 0.00 0.00 3.62
3714 3753 5.004251 CGAAGAAATCGTCATCTCTTCACAG 59.996 44.000 10.35 0.00 46.52 3.66
3720 3759 5.330455 TCGTCATCTCTTCACAGCTAAAT 57.670 39.130 0.00 0.00 0.00 1.40
3731 3770 3.932710 TCACAGCTAAATTACCAGCGAAG 59.067 43.478 0.00 0.57 42.74 3.79
3750 3789 5.851703 GCGAAGTTGTTCAAAATAGAGAACC 59.148 40.000 0.00 0.00 42.57 3.62
3757 3796 3.259064 TCAAAATAGAGAACCTTCGCCG 58.741 45.455 0.00 0.00 0.00 6.46
3775 3814 1.439353 CGGGAGGGATGACATTTGCG 61.439 60.000 0.00 0.00 0.00 4.85
3879 3918 6.746745 TTTTCTTCTAAAACTGTCACCGTT 57.253 33.333 0.00 0.00 0.00 4.44
3880 3919 6.746745 TTTCTTCTAAAACTGTCACCGTTT 57.253 33.333 0.00 0.00 36.22 3.60
3881 3920 5.728351 TCTTCTAAAACTGTCACCGTTTG 57.272 39.130 0.00 0.00 35.00 2.93
3882 3921 5.421277 TCTTCTAAAACTGTCACCGTTTGA 58.579 37.500 0.00 0.00 35.00 2.69
3883 3922 6.053005 TCTTCTAAAACTGTCACCGTTTGAT 58.947 36.000 0.00 0.00 36.32 2.57
3884 3923 5.917541 TCTAAAACTGTCACCGTTTGATC 57.082 39.130 0.00 0.00 36.32 2.92
3885 3924 5.607477 TCTAAAACTGTCACCGTTTGATCT 58.393 37.500 0.00 0.00 36.32 2.75
3898 3937 1.698165 TTGATCTCACGTCGCAACTC 58.302 50.000 0.00 0.00 0.00 3.01
3971 4010 9.490379 AGAGAATGTTCGTCAGTTAGTATTTTT 57.510 29.630 0.00 0.00 0.00 1.94
4012 4051 3.190535 CGGCTTATATGGTATGTTTGGGC 59.809 47.826 0.00 0.00 0.00 5.36
4039 4078 7.148035 TGGTAAGGATTGACATCACATTTCATG 60.148 37.037 0.00 0.00 0.00 3.07
4118 4157 1.077005 AGGCCTATGCTTGGTTTGGAA 59.923 47.619 1.29 0.00 37.74 3.53
4232 4271 5.699001 GCGGGTTTATTTTTCTGTGGAAAAT 59.301 36.000 5.03 2.65 46.57 1.82
4277 4316 3.690475 AGACATTGCATGTGAGACTCA 57.310 42.857 0.00 0.00 45.03 3.41
4295 4334 6.109359 AGACTCAGTCCATACAAATTGCTAC 58.891 40.000 0.00 0.00 32.18 3.58
4296 4335 6.054860 ACTCAGTCCATACAAATTGCTACT 57.945 37.500 0.00 0.00 0.00 2.57
4297 4336 6.109359 ACTCAGTCCATACAAATTGCTACTC 58.891 40.000 0.00 0.00 0.00 2.59
4298 4337 5.428253 TCAGTCCATACAAATTGCTACTCC 58.572 41.667 0.00 0.00 0.00 3.85
4299 4338 5.189736 TCAGTCCATACAAATTGCTACTCCT 59.810 40.000 0.00 0.00 0.00 3.69
4300 4339 5.882557 CAGTCCATACAAATTGCTACTCCTT 59.117 40.000 0.00 0.00 0.00 3.36
4301 4340 6.037610 CAGTCCATACAAATTGCTACTCCTTC 59.962 42.308 0.00 0.00 0.00 3.46
4302 4341 5.297029 GTCCATACAAATTGCTACTCCTTCC 59.703 44.000 0.00 0.00 0.00 3.46
4303 4342 4.273480 CCATACAAATTGCTACTCCTTCCG 59.727 45.833 0.00 0.00 0.00 4.30
4304 4343 3.418684 ACAAATTGCTACTCCTTCCGT 57.581 42.857 0.00 0.00 0.00 4.69
4305 4344 3.751518 ACAAATTGCTACTCCTTCCGTT 58.248 40.909 0.00 0.00 0.00 4.44
4306 4345 3.751698 ACAAATTGCTACTCCTTCCGTTC 59.248 43.478 0.00 0.00 0.00 3.95
4307 4346 3.695830 AATTGCTACTCCTTCCGTTCA 57.304 42.857 0.00 0.00 0.00 3.18
4308 4347 2.450609 TTGCTACTCCTTCCGTTCAC 57.549 50.000 0.00 0.00 0.00 3.18
4309 4348 1.629043 TGCTACTCCTTCCGTTCACT 58.371 50.000 0.00 0.00 0.00 3.41
4310 4349 1.968493 TGCTACTCCTTCCGTTCACTT 59.032 47.619 0.00 0.00 0.00 3.16
4311 4350 2.367567 TGCTACTCCTTCCGTTCACTTT 59.632 45.455 0.00 0.00 0.00 2.66
4312 4351 3.181458 TGCTACTCCTTCCGTTCACTTTT 60.181 43.478 0.00 0.00 0.00 2.27
4313 4352 4.039488 TGCTACTCCTTCCGTTCACTTTTA 59.961 41.667 0.00 0.00 0.00 1.52
4314 4353 5.176592 GCTACTCCTTCCGTTCACTTTTAT 58.823 41.667 0.00 0.00 0.00 1.40
4315 4354 6.071221 TGCTACTCCTTCCGTTCACTTTTATA 60.071 38.462 0.00 0.00 0.00 0.98
4316 4355 6.815142 GCTACTCCTTCCGTTCACTTTTATAA 59.185 38.462 0.00 0.00 0.00 0.98
4317 4356 7.010275 GCTACTCCTTCCGTTCACTTTTATAAG 59.990 40.741 0.00 0.00 37.40 1.73
4318 4357 6.171213 ACTCCTTCCGTTCACTTTTATAAGG 58.829 40.000 0.00 0.00 35.61 2.69
4319 4358 4.939439 TCCTTCCGTTCACTTTTATAAGGC 59.061 41.667 0.00 0.00 35.61 4.35
4320 4359 4.941873 CCTTCCGTTCACTTTTATAAGGCT 59.058 41.667 0.00 0.00 35.61 4.58
4321 4360 5.414765 CCTTCCGTTCACTTTTATAAGGCTT 59.585 40.000 4.58 4.58 35.61 4.35
4322 4361 6.072119 CCTTCCGTTCACTTTTATAAGGCTTT 60.072 38.462 4.45 0.00 35.61 3.51
4323 4362 6.249035 TCCGTTCACTTTTATAAGGCTTTG 57.751 37.500 4.45 0.00 35.61 2.77
4324 4363 5.766174 TCCGTTCACTTTTATAAGGCTTTGT 59.234 36.000 4.45 0.00 35.61 2.83
4325 4364 6.935771 TCCGTTCACTTTTATAAGGCTTTGTA 59.064 34.615 4.45 0.00 35.61 2.41
4326 4365 7.118680 TCCGTTCACTTTTATAAGGCTTTGTAG 59.881 37.037 4.45 0.00 35.61 2.74
4327 4366 7.118680 CCGTTCACTTTTATAAGGCTTTGTAGA 59.881 37.037 4.45 0.00 35.61 2.59
4328 4367 8.665685 CGTTCACTTTTATAAGGCTTTGTAGAT 58.334 33.333 4.45 0.00 35.61 1.98
4329 4368 9.774742 GTTCACTTTTATAAGGCTTTGTAGATG 57.225 33.333 4.45 0.00 35.61 2.90
4330 4369 9.515226 TTCACTTTTATAAGGCTTTGTAGATGT 57.485 29.630 4.45 1.05 35.61 3.06
4331 4370 9.515226 TCACTTTTATAAGGCTTTGTAGATGTT 57.485 29.630 4.45 0.00 35.61 2.71
4336 4375 9.733556 TTTATAAGGCTTTGTAGATGTTTCAGA 57.266 29.630 4.45 0.00 0.00 3.27
4337 4376 5.948992 AAGGCTTTGTAGATGTTTCAGAC 57.051 39.130 0.00 0.00 0.00 3.51
4338 4377 4.973168 AGGCTTTGTAGATGTTTCAGACA 58.027 39.130 0.00 0.00 43.71 3.41
4351 4390 7.878477 ATGTTTCAGACATTATGCAAAACAG 57.122 32.000 11.74 0.00 46.80 3.16
4352 4391 5.691305 TGTTTCAGACATTATGCAAAACAGC 59.309 36.000 3.99 0.00 32.93 4.40
4353 4392 5.710513 TTCAGACATTATGCAAAACAGCT 57.289 34.783 0.00 0.00 34.99 4.24
4354 4393 5.300969 TCAGACATTATGCAAAACAGCTC 57.699 39.130 0.00 0.00 34.99 4.09
4355 4394 4.761227 TCAGACATTATGCAAAACAGCTCA 59.239 37.500 0.00 0.00 34.99 4.26
4356 4395 5.241285 TCAGACATTATGCAAAACAGCTCAA 59.759 36.000 0.00 0.00 34.99 3.02
4357 4396 6.071784 TCAGACATTATGCAAAACAGCTCAAT 60.072 34.615 0.00 0.00 34.99 2.57
4358 4397 6.588756 CAGACATTATGCAAAACAGCTCAATT 59.411 34.615 0.00 0.00 34.99 2.32
4359 4398 7.117236 CAGACATTATGCAAAACAGCTCAATTT 59.883 33.333 0.00 0.00 34.99 1.82
4360 4399 7.330208 AGACATTATGCAAAACAGCTCAATTTC 59.670 33.333 0.00 0.00 34.99 2.17
4361 4400 6.930164 ACATTATGCAAAACAGCTCAATTTCA 59.070 30.769 0.00 0.00 34.99 2.69
4362 4401 6.768029 TTATGCAAAACAGCTCAATTTCAC 57.232 33.333 0.00 0.00 34.99 3.18
4363 4402 4.389890 TGCAAAACAGCTCAATTTCACT 57.610 36.364 0.00 0.00 34.99 3.41
4364 4403 4.757594 TGCAAAACAGCTCAATTTCACTT 58.242 34.783 0.00 0.00 34.99 3.16
4365 4404 4.567558 TGCAAAACAGCTCAATTTCACTTG 59.432 37.500 0.00 0.00 34.99 3.16
4366 4405 4.567959 GCAAAACAGCTCAATTTCACTTGT 59.432 37.500 0.00 0.00 0.00 3.16
4367 4406 5.276536 GCAAAACAGCTCAATTTCACTTGTC 60.277 40.000 0.00 0.00 0.00 3.18
4368 4407 5.841957 AAACAGCTCAATTTCACTTGTCT 57.158 34.783 0.00 0.00 0.00 3.41
4369 4408 4.825546 ACAGCTCAATTTCACTTGTCTG 57.174 40.909 0.00 0.00 35.73 3.51
4370 4409 4.454678 ACAGCTCAATTTCACTTGTCTGA 58.545 39.130 12.20 0.00 34.76 3.27
4371 4410 4.883585 ACAGCTCAATTTCACTTGTCTGAA 59.116 37.500 12.20 0.00 34.76 3.02
4372 4411 5.357878 ACAGCTCAATTTCACTTGTCTGAAA 59.642 36.000 12.20 0.00 42.83 2.69
4373 4412 5.684626 CAGCTCAATTTCACTTGTCTGAAAC 59.315 40.000 0.00 0.00 41.76 2.78
4374 4413 4.672413 GCTCAATTTCACTTGTCTGAAACG 59.328 41.667 0.00 0.00 41.76 3.60
4375 4414 5.504010 GCTCAATTTCACTTGTCTGAAACGA 60.504 40.000 0.00 0.00 41.76 3.85
4376 4415 5.806286 TCAATTTCACTTGTCTGAAACGAC 58.194 37.500 0.00 0.00 41.76 4.34
4377 4416 5.584649 TCAATTTCACTTGTCTGAAACGACT 59.415 36.000 0.00 0.00 41.76 4.18
4378 4417 6.093495 TCAATTTCACTTGTCTGAAACGACTT 59.907 34.615 0.00 0.00 41.76 3.01
4379 4418 7.279090 TCAATTTCACTTGTCTGAAACGACTTA 59.721 33.333 0.00 0.00 41.76 2.24
4380 4419 7.730364 ATTTCACTTGTCTGAAACGACTTAT 57.270 32.000 0.00 0.00 41.76 1.73
4381 4420 8.827177 ATTTCACTTGTCTGAAACGACTTATA 57.173 30.769 0.00 0.00 41.76 0.98
4382 4421 8.651391 TTTCACTTGTCTGAAACGACTTATAA 57.349 30.769 0.00 0.00 35.63 0.98
4383 4422 8.651391 TTCACTTGTCTGAAACGACTTATAAA 57.349 30.769 0.00 0.00 35.00 1.40
4384 4423 8.651391 TCACTTGTCTGAAACGACTTATAAAA 57.349 30.769 0.00 0.00 35.00 1.52
4385 4424 8.761497 TCACTTGTCTGAAACGACTTATAAAAG 58.239 33.333 0.00 0.00 38.77 2.27
4387 4426 8.548721 ACTTGTCTGAAACGACTTATAAAAGTG 58.451 33.333 0.00 0.00 46.09 3.16
4388 4427 8.651391 TTGTCTGAAACGACTTATAAAAGTGA 57.349 30.769 0.00 0.00 46.09 3.41
4389 4428 8.651391 TGTCTGAAACGACTTATAAAAGTGAA 57.349 30.769 0.00 0.00 46.09 3.18
4390 4429 8.545420 TGTCTGAAACGACTTATAAAAGTGAAC 58.455 33.333 0.00 0.00 46.09 3.18
4391 4430 8.545420 GTCTGAAACGACTTATAAAAGTGAACA 58.455 33.333 0.00 0.00 46.09 3.18
4392 4431 8.761497 TCTGAAACGACTTATAAAAGTGAACAG 58.239 33.333 0.00 0.00 46.09 3.16
4393 4432 8.651391 TGAAACGACTTATAAAAGTGAACAGA 57.349 30.769 0.00 0.00 46.09 3.41
4394 4433 8.761497 TGAAACGACTTATAAAAGTGAACAGAG 58.239 33.333 0.00 0.00 46.09 3.35
4395 4434 7.653767 AACGACTTATAAAAGTGAACAGAGG 57.346 36.000 0.00 0.00 46.09 3.69
4396 4435 6.164176 ACGACTTATAAAAGTGAACAGAGGG 58.836 40.000 0.00 0.00 46.09 4.30
4397 4436 6.014840 ACGACTTATAAAAGTGAACAGAGGGA 60.015 38.462 0.00 0.00 46.09 4.20
4398 4437 6.531948 CGACTTATAAAAGTGAACAGAGGGAG 59.468 42.308 0.00 0.00 46.09 4.30
4399 4438 7.317722 ACTTATAAAAGTGAACAGAGGGAGT 57.682 36.000 0.00 0.00 44.40 3.85
4400 4439 8.431910 ACTTATAAAAGTGAACAGAGGGAGTA 57.568 34.615 0.00 0.00 44.40 2.59
4401 4440 8.532819 ACTTATAAAAGTGAACAGAGGGAGTAG 58.467 37.037 0.00 0.00 44.40 2.57
4402 4441 6.936968 ATAAAAGTGAACAGAGGGAGTAGT 57.063 37.500 0.00 0.00 0.00 2.73
4403 4442 9.537852 TTATAAAAGTGAACAGAGGGAGTAGTA 57.462 33.333 0.00 0.00 0.00 1.82
4404 4443 6.936968 AAAAGTGAACAGAGGGAGTAGTAT 57.063 37.500 0.00 0.00 0.00 2.12
4405 4444 9.710818 ATAAAAGTGAACAGAGGGAGTAGTATA 57.289 33.333 0.00 0.00 0.00 1.47
4406 4445 8.611051 AAAAGTGAACAGAGGGAGTAGTATAT 57.389 34.615 0.00 0.00 0.00 0.86
4407 4446 9.710818 AAAAGTGAACAGAGGGAGTAGTATATA 57.289 33.333 0.00 0.00 0.00 0.86
4408 4447 9.884814 AAAGTGAACAGAGGGAGTAGTATATAT 57.115 33.333 0.00 0.00 0.00 0.86
4409 4448 9.884814 AAGTGAACAGAGGGAGTAGTATATATT 57.115 33.333 0.00 0.00 0.00 1.28
4410 4449 9.884814 AGTGAACAGAGGGAGTAGTATATATTT 57.115 33.333 0.00 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 95 4.452733 ACGCAAGAGTAGGCCGCC 62.453 66.667 0.00 0.00 43.62 6.13
501 502 5.427378 TCCATCGAAACTTGCAATCTGATA 58.573 37.500 0.00 0.00 0.00 2.15
513 514 6.000219 CCAAATCATCCTATCCATCGAAACT 59.000 40.000 0.00 0.00 0.00 2.66
566 567 9.939424 AAAATGGAGGAAGTACTAGTCTACTAT 57.061 33.333 0.00 0.00 0.00 2.12
578 579 9.174166 GCAGAGTAAATAAAAATGGAGGAAGTA 57.826 33.333 0.00 0.00 0.00 2.24
579 580 7.669722 TGCAGAGTAAATAAAAATGGAGGAAGT 59.330 33.333 0.00 0.00 0.00 3.01
580 581 8.055279 TGCAGAGTAAATAAAAATGGAGGAAG 57.945 34.615 0.00 0.00 0.00 3.46
581 582 8.593945 ATGCAGAGTAAATAAAAATGGAGGAA 57.406 30.769 0.00 0.00 0.00 3.36
582 583 9.866655 ATATGCAGAGTAAATAAAAATGGAGGA 57.133 29.630 0.00 0.00 0.00 3.71
595 596 9.719355 TCAGTCAACTTTAATATGCAGAGTAAA 57.281 29.630 12.75 12.75 0.00 2.01
596 597 9.719355 TTCAGTCAACTTTAATATGCAGAGTAA 57.281 29.630 0.00 0.00 0.00 2.24
597 598 9.371136 CTTCAGTCAACTTTAATATGCAGAGTA 57.629 33.333 0.00 0.00 0.00 2.59
598 599 7.880195 ACTTCAGTCAACTTTAATATGCAGAGT 59.120 33.333 0.00 0.00 0.00 3.24
599 600 8.261492 ACTTCAGTCAACTTTAATATGCAGAG 57.739 34.615 0.00 0.00 0.00 3.35
600 601 8.256611 GACTTCAGTCAACTTTAATATGCAGA 57.743 34.615 1.86 0.00 44.18 4.26
714 715 9.868277 AAGAACAAATCAACAACACTAAATTCA 57.132 25.926 0.00 0.00 0.00 2.57
716 717 9.651913 ACAAGAACAAATCAACAACACTAAATT 57.348 25.926 0.00 0.00 0.00 1.82
768 769 8.398665 AGTCAAGCTTTACAAACTTTGACTAAG 58.601 33.333 13.07 8.84 39.87 2.18
769 770 8.276252 AGTCAAGCTTTACAAACTTTGACTAA 57.724 30.769 13.07 0.00 33.77 2.24
770 771 7.859325 AGTCAAGCTTTACAAACTTTGACTA 57.141 32.000 13.07 0.00 33.77 2.59
771 772 6.759497 AGTCAAGCTTTACAAACTTTGACT 57.241 33.333 13.07 16.10 32.23 3.41
772 773 7.812309 AAAGTCAAGCTTTACAAACTTTGAC 57.188 32.000 13.07 6.64 44.90 3.18
775 776 6.811665 GGTCAAAGTCAAGCTTTACAAACTTT 59.188 34.615 13.07 12.29 44.95 2.66
776 777 6.071616 TGGTCAAAGTCAAGCTTTACAAACTT 60.072 34.615 13.07 7.60 44.95 2.66
777 778 5.417580 TGGTCAAAGTCAAGCTTTACAAACT 59.582 36.000 13.07 2.11 44.95 2.66
778 779 5.646606 TGGTCAAAGTCAAGCTTTACAAAC 58.353 37.500 13.07 5.27 44.95 2.93
779 780 5.906113 TGGTCAAAGTCAAGCTTTACAAA 57.094 34.783 13.07 0.00 44.95 2.83
780 781 5.906113 TTGGTCAAAGTCAAGCTTTACAA 57.094 34.783 13.07 0.00 44.95 2.41
781 782 5.393678 GGTTTGGTCAAAGTCAAGCTTTACA 60.394 40.000 13.07 0.00 44.95 2.41
782 783 5.041287 GGTTTGGTCAAAGTCAAGCTTTAC 58.959 41.667 2.40 2.40 44.95 2.01
783 784 4.953579 AGGTTTGGTCAAAGTCAAGCTTTA 59.046 37.500 0.00 0.00 44.95 1.85
785 786 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
786 787 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
787 788 4.911514 TTAGGTTTGGTCAAAGTCAAGC 57.088 40.909 0.00 0.00 0.00 4.01
788 789 7.029563 GCATATTAGGTTTGGTCAAAGTCAAG 58.970 38.462 0.00 0.00 0.00 3.02
789 790 6.348950 CGCATATTAGGTTTGGTCAAAGTCAA 60.349 38.462 0.00 0.00 0.00 3.18
790 791 5.123186 CGCATATTAGGTTTGGTCAAAGTCA 59.877 40.000 0.00 0.00 0.00 3.41
791 792 5.353123 TCGCATATTAGGTTTGGTCAAAGTC 59.647 40.000 0.00 0.00 0.00 3.01
792 793 5.250200 TCGCATATTAGGTTTGGTCAAAGT 58.750 37.500 0.00 0.00 0.00 2.66
793 794 5.811399 TCGCATATTAGGTTTGGTCAAAG 57.189 39.130 0.00 0.00 0.00 2.77
794 795 5.708230 AGTTCGCATATTAGGTTTGGTCAAA 59.292 36.000 0.00 0.00 0.00 2.69
795 796 5.250200 AGTTCGCATATTAGGTTTGGTCAA 58.750 37.500 0.00 0.00 0.00 3.18
796 797 4.839121 AGTTCGCATATTAGGTTTGGTCA 58.161 39.130 0.00 0.00 0.00 4.02
797 798 6.913873 TTAGTTCGCATATTAGGTTTGGTC 57.086 37.500 0.00 0.00 0.00 4.02
798 799 7.875327 ATTTAGTTCGCATATTAGGTTTGGT 57.125 32.000 0.00 0.00 0.00 3.67
803 804 9.925268 CGTTTTTATTTAGTTCGCATATTAGGT 57.075 29.630 0.00 0.00 0.00 3.08
804 805 9.377383 CCGTTTTTATTTAGTTCGCATATTAGG 57.623 33.333 0.00 0.00 0.00 2.69
807 808 8.126700 CCTCCGTTTTTATTTAGTTCGCATATT 58.873 33.333 0.00 0.00 0.00 1.28
808 809 7.255001 CCCTCCGTTTTTATTTAGTTCGCATAT 60.255 37.037 0.00 0.00 0.00 1.78
809 810 6.037391 CCCTCCGTTTTTATTTAGTTCGCATA 59.963 38.462 0.00 0.00 0.00 3.14
810 811 5.163693 CCCTCCGTTTTTATTTAGTTCGCAT 60.164 40.000 0.00 0.00 0.00 4.73
811 812 4.154556 CCCTCCGTTTTTATTTAGTTCGCA 59.845 41.667 0.00 0.00 0.00 5.10
812 813 4.392754 TCCCTCCGTTTTTATTTAGTTCGC 59.607 41.667 0.00 0.00 0.00 4.70
813 814 5.640783 ACTCCCTCCGTTTTTATTTAGTTCG 59.359 40.000 0.00 0.00 0.00 3.95
814 815 7.821359 ACTACTCCCTCCGTTTTTATTTAGTTC 59.179 37.037 0.00 0.00 0.00 3.01
815 816 7.683578 ACTACTCCCTCCGTTTTTATTTAGTT 58.316 34.615 0.00 0.00 0.00 2.24
816 817 7.250032 ACTACTCCCTCCGTTTTTATTTAGT 57.750 36.000 0.00 0.00 0.00 2.24
817 818 9.828039 AATACTACTCCCTCCGTTTTTATTTAG 57.172 33.333 0.00 0.00 0.00 1.85
821 822 9.993454 GATAAATACTACTCCCTCCGTTTTTAT 57.007 33.333 0.00 0.00 31.17 1.40
822 823 8.980596 TGATAAATACTACTCCCTCCGTTTTTA 58.019 33.333 0.00 0.00 0.00 1.52
823 824 7.854337 TGATAAATACTACTCCCTCCGTTTTT 58.146 34.615 0.00 0.00 0.00 1.94
824 825 7.343833 TCTGATAAATACTACTCCCTCCGTTTT 59.656 37.037 0.00 0.00 0.00 2.43
825 826 6.837568 TCTGATAAATACTACTCCCTCCGTTT 59.162 38.462 0.00 0.00 0.00 3.60
826 827 6.371278 TCTGATAAATACTACTCCCTCCGTT 58.629 40.000 0.00 0.00 0.00 4.44
827 828 5.950023 TCTGATAAATACTACTCCCTCCGT 58.050 41.667 0.00 0.00 0.00 4.69
828 829 6.294620 GGTTCTGATAAATACTACTCCCTCCG 60.295 46.154 0.00 0.00 0.00 4.63
829 830 6.294620 CGGTTCTGATAAATACTACTCCCTCC 60.295 46.154 0.00 0.00 0.00 4.30
830 831 6.679843 CGGTTCTGATAAATACTACTCCCTC 58.320 44.000 0.00 0.00 0.00 4.30
831 832 5.010820 GCGGTTCTGATAAATACTACTCCCT 59.989 44.000 0.00 0.00 0.00 4.20
832 833 5.228665 GCGGTTCTGATAAATACTACTCCC 58.771 45.833 0.00 0.00 0.00 4.30
833 834 5.228665 GGCGGTTCTGATAAATACTACTCC 58.771 45.833 0.00 0.00 0.00 3.85
834 835 5.010820 AGGGCGGTTCTGATAAATACTACTC 59.989 44.000 0.00 0.00 0.00 2.59
835 836 4.900054 AGGGCGGTTCTGATAAATACTACT 59.100 41.667 0.00 0.00 0.00 2.57
836 837 4.989168 CAGGGCGGTTCTGATAAATACTAC 59.011 45.833 0.00 0.00 34.36 2.73
861 862 0.601046 TGCTGCACCGAACTGAAGAG 60.601 55.000 0.00 0.00 0.00 2.85
897 898 7.068716 AGCAACCTTTTGACTTTTGAGAACTAT 59.931 33.333 0.00 0.00 34.24 2.12
898 899 6.377146 AGCAACCTTTTGACTTTTGAGAACTA 59.623 34.615 0.00 0.00 34.24 2.24
936 945 3.785859 GATCGCAGCCTGGGACCA 61.786 66.667 14.20 0.00 42.20 4.02
944 953 1.089481 TTGGTTGATCGATCGCAGCC 61.089 55.000 20.03 17.58 36.12 4.85
955 964 0.687354 AGCGTCTGGAGTTGGTTGAT 59.313 50.000 0.00 0.00 0.00 2.57
964 973 1.739338 AATCGGGCTAGCGTCTGGAG 61.739 60.000 9.00 0.00 0.00 3.86
967 976 0.179111 TGAAATCGGGCTAGCGTCTG 60.179 55.000 9.00 0.65 0.00 3.51
1401 1410 2.264794 GCGTGGGTGTCGAGGAAT 59.735 61.111 0.00 0.00 0.00 3.01
1438 1447 4.629200 AGAAATGAGATGAAGAAGCGTGTC 59.371 41.667 0.00 0.00 0.00 3.67
1475 1484 0.251341 GACCACCAGCCAAGTTGGAT 60.251 55.000 26.52 17.68 40.96 3.41
1491 1500 8.088981 TCTACTGAGAAACTAAACAGATTGACC 58.911 37.037 0.00 0.00 34.88 4.02
1534 1547 8.135382 AGATTTTCCAGCTCAACTAGTAGTAA 57.865 34.615 2.50 0.00 0.00 2.24
1577 1590 3.094572 AGAAGAATTTCACTGGCATGGG 58.905 45.455 0.00 0.00 35.70 4.00
1584 1597 2.886523 TGCCCACAGAAGAATTTCACTG 59.113 45.455 16.47 16.47 35.70 3.66
1597 1610 1.250328 TTCATTTGCTCTGCCCACAG 58.750 50.000 0.00 0.00 45.95 3.66
1702 1721 7.415206 GCCCAAATTCAGGTAGTACAAACATAG 60.415 40.741 2.06 0.00 0.00 2.23
1886 1905 2.594303 CGTGCTCTGTTTGGCCCA 60.594 61.111 0.00 0.00 0.00 5.36
1979 1998 3.701542 CCTTACTCAGCACCTGACTATCA 59.298 47.826 0.00 0.00 35.39 2.15
2015 2034 0.108585 TATTCCTCGCAATGGCCTCC 59.891 55.000 3.32 0.00 36.38 4.30
2149 2168 5.123227 GCTGTAAGTTAAGCCATGGATACA 58.877 41.667 18.40 8.49 46.34 2.29
2279 2298 3.732849 GCAGGGTCCAGGGAAGGG 61.733 72.222 0.00 0.00 0.00 3.95
2280 2299 4.101448 CGCAGGGTCCAGGGAAGG 62.101 72.222 0.00 0.00 0.00 3.46
2281 2300 4.785453 GCGCAGGGTCCAGGGAAG 62.785 72.222 0.30 0.00 0.00 3.46
2293 2312 4.819761 TAGCTCCCGCTTGCGCAG 62.820 66.667 11.31 6.32 46.47 5.18
2296 2315 2.202932 ATGTAGCTCCCGCTTGCG 60.203 61.111 8.14 8.14 46.47 4.85
2297 2316 2.828128 GCATGTAGCTCCCGCTTGC 61.828 63.158 0.00 0.00 46.47 4.01
2298 2317 1.450134 TGCATGTAGCTCCCGCTTG 60.450 57.895 0.00 0.00 46.47 4.01
2299 2318 1.450312 GTGCATGTAGCTCCCGCTT 60.450 57.895 0.00 0.00 46.47 4.68
2305 2324 1.089920 CAACCTGGTGCATGTAGCTC 58.910 55.000 14.15 0.00 45.94 4.09
2306 2325 0.962356 GCAACCTGGTGCATGTAGCT 60.962 55.000 14.15 0.00 44.29 3.32
2307 2326 1.508088 GCAACCTGGTGCATGTAGC 59.492 57.895 6.00 6.00 44.29 3.58
2308 2327 2.183409 GGCAACCTGGTGCATGTAG 58.817 57.895 18.44 0.00 46.81 2.74
2309 2328 4.413928 GGCAACCTGGTGCATGTA 57.586 55.556 18.44 0.00 46.81 2.29
2321 2340 4.139038 TCTAGTGTACCAAAAAGGGCAAC 58.861 43.478 0.00 0.00 43.89 4.17
2322 2341 4.440826 TCTAGTGTACCAAAAAGGGCAA 57.559 40.909 0.00 0.00 43.89 4.52
2323 2342 4.440826 TTCTAGTGTACCAAAAAGGGCA 57.559 40.909 0.00 0.00 43.89 5.36
2324 2343 5.977489 ATTTCTAGTGTACCAAAAAGGGC 57.023 39.130 0.00 0.00 43.89 5.19
2325 2344 7.865889 GTCAAATTTCTAGTGTACCAAAAAGGG 59.134 37.037 0.00 0.00 43.89 3.95
2326 2345 8.410141 TGTCAAATTTCTAGTGTACCAAAAAGG 58.590 33.333 0.00 0.00 45.67 3.11
2327 2346 9.450807 CTGTCAAATTTCTAGTGTACCAAAAAG 57.549 33.333 0.00 0.00 0.00 2.27
2328 2347 9.179909 TCTGTCAAATTTCTAGTGTACCAAAAA 57.820 29.630 0.00 0.00 0.00 1.94
2329 2348 8.740123 TCTGTCAAATTTCTAGTGTACCAAAA 57.260 30.769 0.00 0.00 0.00 2.44
2403 2422 7.466746 ACACAAATTAACTAGAATGCATGGT 57.533 32.000 0.00 0.00 0.00 3.55
2607 2627 7.981142 TCATTATTATGGGAGGTAGGTTAACC 58.019 38.462 17.41 17.41 34.68 2.85
2611 2631 9.574577 TCATATCATTATTATGGGAGGTAGGTT 57.425 33.333 0.00 0.00 32.40 3.50
2643 2667 2.424246 CCGAAGACTTCTAGTGTCCTCC 59.576 54.545 13.22 4.74 35.21 4.30
2644 2668 3.083293 ACCGAAGACTTCTAGTGTCCTC 58.917 50.000 13.22 9.66 35.21 3.71
2672 2696 2.252072 GACGCCCACTTGCATCCCTA 62.252 60.000 0.00 0.00 0.00 3.53
2696 2720 7.876068 CACTATTTTCCTACTTATGCGGGATAA 59.124 37.037 1.91 1.91 0.00 1.75
2723 2747 8.209802 TCCTCACCCAGATTTAACTTAGTTTA 57.790 34.615 1.94 0.00 0.00 2.01
2726 2750 6.697641 TTCCTCACCCAGATTTAACTTAGT 57.302 37.500 0.00 0.00 0.00 2.24
2739 2763 8.607713 TCAACTTAACTATAATTTCCTCACCCA 58.392 33.333 0.00 0.00 0.00 4.51
2771 2795 1.069636 CCGTCCCGCTTCGTAGTATAC 60.070 57.143 0.00 0.00 38.50 1.47
2798 2822 3.376935 CTAGGGGTGCAGAGCGGTG 62.377 68.421 0.00 0.00 0.00 4.94
2799 2823 3.077556 CTAGGGGTGCAGAGCGGT 61.078 66.667 0.00 0.00 0.00 5.68
2810 2834 3.244700 CCCTTGATGCTATTGACTAGGGG 60.245 52.174 0.00 0.00 40.09 4.79
2908 2933 6.672218 TCCTCAAACTTATCTAAGATGACCCA 59.328 38.462 4.03 0.00 37.08 4.51
2941 2966 0.830648 GTCTCCCGAATGACCCATGA 59.169 55.000 0.00 0.00 0.00 3.07
3007 3032 6.543465 CAGCTCAAACTGGATTGGTATCAATA 59.457 38.462 0.00 0.00 43.08 1.90
3026 3054 4.019792 TCCTTGAAGCATTTACAGCTCA 57.980 40.909 0.00 0.00 42.53 4.26
3203 3235 4.201763 CCGTTTCTTTCAGCTAGAATGCTC 60.202 45.833 0.00 0.00 41.98 4.26
3534 3566 2.591715 GGGGAATGCGATGACCGG 60.592 66.667 0.00 0.00 39.04 5.28
3543 3575 1.134699 GCAGCTAAAAAGGGGGAATGC 60.135 52.381 0.00 0.00 0.00 3.56
3592 3631 1.067295 TTCACCTGCCATCCACTTCT 58.933 50.000 0.00 0.00 0.00 2.85
3595 3634 0.250901 GTGTTCACCTGCCATCCACT 60.251 55.000 0.00 0.00 0.00 4.00
3646 3685 7.636259 TCAGAAAAACACACTTTTTGTTCAG 57.364 32.000 0.00 0.00 36.13 3.02
3714 3753 4.680171 ACAACTTCGCTGGTAATTTAGC 57.320 40.909 0.00 0.00 36.60 3.09
3720 3759 4.966965 TTTTGAACAACTTCGCTGGTAA 57.033 36.364 0.00 0.00 0.00 2.85
3731 3770 5.851703 GCGAAGGTTCTCTATTTTGAACAAC 59.148 40.000 7.91 0.00 42.91 3.32
3750 3789 3.154473 TCATCCCTCCCGGCGAAG 61.154 66.667 9.30 5.24 0.00 3.79
3757 3796 0.107214 TCGCAAATGTCATCCCTCCC 60.107 55.000 0.00 0.00 0.00 4.30
3799 3838 8.653984 TTTGAAGAAAAATGTCATACGAATCG 57.346 30.769 0.00 0.00 0.00 3.34
3859 3898 5.421277 TCAAACGGTGACAGTTTTAGAAGA 58.579 37.500 11.04 3.11 39.50 2.87
3879 3918 1.000717 TGAGTTGCGACGTGAGATCAA 60.001 47.619 0.00 0.00 0.00 2.57
3880 3919 0.596082 TGAGTTGCGACGTGAGATCA 59.404 50.000 0.00 0.00 0.00 2.92
3881 3920 1.698165 TTGAGTTGCGACGTGAGATC 58.302 50.000 0.00 0.00 0.00 2.75
3882 3921 1.792949 GTTTGAGTTGCGACGTGAGAT 59.207 47.619 0.00 0.00 0.00 2.75
3883 3922 1.202371 AGTTTGAGTTGCGACGTGAGA 60.202 47.619 0.00 0.00 0.00 3.27
3884 3923 1.209128 AGTTTGAGTTGCGACGTGAG 58.791 50.000 0.00 0.00 0.00 3.51
3885 3924 2.390938 CTAGTTTGAGTTGCGACGTGA 58.609 47.619 0.00 0.00 0.00 4.35
3898 3937 4.379793 GCGACACATTTTCTTGCTAGTTTG 59.620 41.667 0.00 0.00 0.00 2.93
3971 4010 3.682858 GCCGTGTGATCTTTTAGCTAACA 59.317 43.478 5.45 0.00 0.00 2.41
4012 4051 6.375174 TGAAATGTGATGTCAATCCTTACCAG 59.625 38.462 0.00 0.00 31.15 4.00
4039 4078 2.705730 ACCCAAACAACCAAAGCAAAC 58.294 42.857 0.00 0.00 0.00 2.93
4094 4133 0.698238 AACCAAGCATAGGCCTGTGA 59.302 50.000 31.65 4.63 42.56 3.58
4097 4136 0.819582 CCAAACCAAGCATAGGCCTG 59.180 55.000 17.99 0.25 42.56 4.85
4118 4157 0.687354 CCTCCCGCAAGCTATATGGT 59.313 55.000 0.00 0.00 0.00 3.55
4179 4218 1.211949 TGGCTTCTTCCCGGGAATTAG 59.788 52.381 35.62 31.11 33.28 1.73
4232 4271 2.422597 CGAGTCCAAATGCACCACTTA 58.577 47.619 0.00 0.00 0.00 2.24
4277 4316 5.700402 AGGAGTAGCAATTTGTATGGACT 57.300 39.130 0.00 0.00 0.00 3.85
4295 4334 5.064834 GCCTTATAAAAGTGAACGGAAGGAG 59.935 44.000 0.00 0.00 35.27 3.69
4296 4335 4.939439 GCCTTATAAAAGTGAACGGAAGGA 59.061 41.667 0.00 0.00 35.27 3.36
4297 4336 4.941873 AGCCTTATAAAAGTGAACGGAAGG 59.058 41.667 0.00 0.00 36.18 3.46
4298 4337 6.496338 AAGCCTTATAAAAGTGAACGGAAG 57.504 37.500 0.00 0.00 0.00 3.46
4299 4338 6.263617 ACAAAGCCTTATAAAAGTGAACGGAA 59.736 34.615 0.00 0.00 0.00 4.30
4300 4339 5.766174 ACAAAGCCTTATAAAAGTGAACGGA 59.234 36.000 0.00 0.00 0.00 4.69
4301 4340 6.009115 ACAAAGCCTTATAAAAGTGAACGG 57.991 37.500 0.00 0.00 0.00 4.44
4302 4341 8.025243 TCTACAAAGCCTTATAAAAGTGAACG 57.975 34.615 0.00 0.00 0.00 3.95
4303 4342 9.774742 CATCTACAAAGCCTTATAAAAGTGAAC 57.225 33.333 0.00 0.00 0.00 3.18
4304 4343 9.515226 ACATCTACAAAGCCTTATAAAAGTGAA 57.485 29.630 0.00 0.00 0.00 3.18
4305 4344 9.515226 AACATCTACAAAGCCTTATAAAAGTGA 57.485 29.630 0.00 0.00 0.00 3.41
4310 4349 9.733556 TCTGAAACATCTACAAAGCCTTATAAA 57.266 29.630 0.00 0.00 0.00 1.40
4311 4350 9.162764 GTCTGAAACATCTACAAAGCCTTATAA 57.837 33.333 0.00 0.00 0.00 0.98
4312 4351 8.318412 TGTCTGAAACATCTACAAAGCCTTATA 58.682 33.333 0.00 0.00 31.20 0.98
4313 4352 7.168219 TGTCTGAAACATCTACAAAGCCTTAT 58.832 34.615 0.00 0.00 31.20 1.73
4314 4353 6.530120 TGTCTGAAACATCTACAAAGCCTTA 58.470 36.000 0.00 0.00 31.20 2.69
4315 4354 5.376625 TGTCTGAAACATCTACAAAGCCTT 58.623 37.500 0.00 0.00 31.20 4.35
4316 4355 4.973168 TGTCTGAAACATCTACAAAGCCT 58.027 39.130 0.00 0.00 31.20 4.58
4317 4356 5.886960 ATGTCTGAAACATCTACAAAGCC 57.113 39.130 0.00 0.00 45.78 4.35
4327 4366 7.738950 AGCTGTTTTGCATAATGTCTGAAACAT 60.739 33.333 7.72 0.00 42.06 2.71
4328 4367 5.691305 GCTGTTTTGCATAATGTCTGAAACA 59.309 36.000 7.19 7.19 43.51 2.83
4329 4368 5.922544 AGCTGTTTTGCATAATGTCTGAAAC 59.077 36.000 0.00 0.00 34.99 2.78
4330 4369 6.088016 AGCTGTTTTGCATAATGTCTGAAA 57.912 33.333 0.00 0.00 34.99 2.69
4331 4370 5.241285 TGAGCTGTTTTGCATAATGTCTGAA 59.759 36.000 0.00 0.00 34.99 3.02
4332 4371 4.761227 TGAGCTGTTTTGCATAATGTCTGA 59.239 37.500 0.00 0.00 34.99 3.27
4333 4372 5.050644 TGAGCTGTTTTGCATAATGTCTG 57.949 39.130 0.00 0.00 34.99 3.51
4334 4373 5.710513 TTGAGCTGTTTTGCATAATGTCT 57.289 34.783 0.00 0.00 34.99 3.41
4335 4374 6.956299 AATTGAGCTGTTTTGCATAATGTC 57.044 33.333 0.00 0.00 34.99 3.06
4336 4375 6.930164 TGAAATTGAGCTGTTTTGCATAATGT 59.070 30.769 0.00 0.00 34.99 2.71
4337 4376 7.117236 AGTGAAATTGAGCTGTTTTGCATAATG 59.883 33.333 0.00 0.00 34.99 1.90
4338 4377 7.156673 AGTGAAATTGAGCTGTTTTGCATAAT 58.843 30.769 0.00 0.00 34.99 1.28
4339 4378 6.514947 AGTGAAATTGAGCTGTTTTGCATAA 58.485 32.000 0.00 0.00 34.99 1.90
4340 4379 6.088016 AGTGAAATTGAGCTGTTTTGCATA 57.912 33.333 0.00 0.00 34.99 3.14
4341 4380 4.952460 AGTGAAATTGAGCTGTTTTGCAT 58.048 34.783 0.00 0.00 34.99 3.96
4342 4381 4.389890 AGTGAAATTGAGCTGTTTTGCA 57.610 36.364 0.00 0.00 34.99 4.08
4343 4382 4.567959 ACAAGTGAAATTGAGCTGTTTTGC 59.432 37.500 0.00 0.00 34.20 3.68
4344 4383 6.020121 CAGACAAGTGAAATTGAGCTGTTTTG 60.020 38.462 0.00 0.00 34.50 2.44
4345 4384 6.038356 CAGACAAGTGAAATTGAGCTGTTTT 58.962 36.000 0.00 0.00 34.50 2.43
4346 4385 5.357878 TCAGACAAGTGAAATTGAGCTGTTT 59.642 36.000 0.00 0.00 37.38 2.83
4347 4386 4.883585 TCAGACAAGTGAAATTGAGCTGTT 59.116 37.500 0.00 0.00 37.38 3.16
4348 4387 4.454678 TCAGACAAGTGAAATTGAGCTGT 58.545 39.130 0.00 0.00 37.38 4.40
4349 4388 5.428496 TTCAGACAAGTGAAATTGAGCTG 57.572 39.130 0.00 5.01 37.41 4.24
4350 4389 5.504665 CGTTTCAGACAAGTGAAATTGAGCT 60.505 40.000 2.59 0.00 45.71 4.09
4351 4390 4.672413 CGTTTCAGACAAGTGAAATTGAGC 59.328 41.667 2.59 0.00 45.71 4.26
4352 4391 5.904080 GTCGTTTCAGACAAGTGAAATTGAG 59.096 40.000 2.59 0.00 45.71 3.02
4353 4392 5.584649 AGTCGTTTCAGACAAGTGAAATTGA 59.415 36.000 2.59 2.32 45.71 2.57
4354 4393 5.810525 AGTCGTTTCAGACAAGTGAAATTG 58.189 37.500 2.59 0.24 45.71 2.32
4355 4394 6.436843 AAGTCGTTTCAGACAAGTGAAATT 57.563 33.333 2.59 0.00 45.71 1.82
4356 4395 7.730364 ATAAGTCGTTTCAGACAAGTGAAAT 57.270 32.000 2.59 0.00 45.71 2.17
4357 4396 8.651391 TTATAAGTCGTTTCAGACAAGTGAAA 57.349 30.769 0.00 0.00 42.79 2.69
4358 4397 8.651391 TTTATAAGTCGTTTCAGACAAGTGAA 57.349 30.769 0.00 0.00 43.24 3.18
4359 4398 8.651391 TTTTATAAGTCGTTTCAGACAAGTGA 57.349 30.769 0.00 0.00 43.24 3.41
4360 4399 8.548721 ACTTTTATAAGTCGTTTCAGACAAGTG 58.451 33.333 0.00 0.00 40.60 3.16
4361 4400 8.548721 CACTTTTATAAGTCGTTTCAGACAAGT 58.451 33.333 0.00 0.00 42.67 3.16
4362 4401 8.761497 TCACTTTTATAAGTCGTTTCAGACAAG 58.239 33.333 0.00 0.00 42.67 3.16
4363 4402 8.651391 TCACTTTTATAAGTCGTTTCAGACAA 57.349 30.769 0.00 0.00 42.67 3.18
4364 4403 8.545420 GTTCACTTTTATAAGTCGTTTCAGACA 58.455 33.333 0.00 0.00 42.67 3.41
4365 4404 8.545420 TGTTCACTTTTATAAGTCGTTTCAGAC 58.455 33.333 0.00 0.00 42.67 3.51
4366 4405 8.651391 TGTTCACTTTTATAAGTCGTTTCAGA 57.349 30.769 0.00 0.00 42.67 3.27
4367 4406 8.761497 TCTGTTCACTTTTATAAGTCGTTTCAG 58.239 33.333 0.00 2.61 42.67 3.02
4368 4407 8.651391 TCTGTTCACTTTTATAAGTCGTTTCA 57.349 30.769 0.00 0.00 42.67 2.69
4369 4408 8.221766 CCTCTGTTCACTTTTATAAGTCGTTTC 58.778 37.037 0.00 0.00 42.67 2.78
4370 4409 7.172703 CCCTCTGTTCACTTTTATAAGTCGTTT 59.827 37.037 0.00 0.00 42.67 3.60
4371 4410 6.649557 CCCTCTGTTCACTTTTATAAGTCGTT 59.350 38.462 0.00 0.00 42.67 3.85
4372 4411 6.014840 TCCCTCTGTTCACTTTTATAAGTCGT 60.015 38.462 0.00 0.00 42.67 4.34
4373 4412 6.395629 TCCCTCTGTTCACTTTTATAAGTCG 58.604 40.000 0.00 0.00 42.67 4.18
4374 4413 7.387643 ACTCCCTCTGTTCACTTTTATAAGTC 58.612 38.462 0.00 0.00 42.67 3.01
4375 4414 7.317722 ACTCCCTCTGTTCACTTTTATAAGT 57.682 36.000 0.00 0.00 45.40 2.24
4376 4415 8.532819 ACTACTCCCTCTGTTCACTTTTATAAG 58.467 37.037 0.00 0.00 37.40 1.73
4377 4416 8.431910 ACTACTCCCTCTGTTCACTTTTATAA 57.568 34.615 0.00 0.00 0.00 0.98
4378 4417 9.710818 ATACTACTCCCTCTGTTCACTTTTATA 57.289 33.333 0.00 0.00 0.00 0.98
4379 4418 6.936968 ACTACTCCCTCTGTTCACTTTTAT 57.063 37.500 0.00 0.00 0.00 1.40
4380 4419 9.710818 ATATACTACTCCCTCTGTTCACTTTTA 57.289 33.333 0.00 0.00 0.00 1.52
4381 4420 6.936968 ATACTACTCCCTCTGTTCACTTTT 57.063 37.500 0.00 0.00 0.00 2.27
4382 4421 9.884814 ATATATACTACTCCCTCTGTTCACTTT 57.115 33.333 0.00 0.00 0.00 2.66
4383 4422 9.884814 AATATATACTACTCCCTCTGTTCACTT 57.115 33.333 0.00 0.00 0.00 3.16
4384 4423 9.884814 AAATATATACTACTCCCTCTGTTCACT 57.115 33.333 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.