Multiple sequence alignment - TraesCS4A01G122100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G122100 chr4A 100.000 3787 0 0 1 3787 150865231 150869017 0.000000e+00 6994
1 TraesCS4A01G122100 chr4B 94.089 1421 35 18 618 2019 399191861 399193251 0.000000e+00 2113
2 TraesCS4A01G122100 chr4B 95.624 617 14 4 2372 2984 399193684 399194291 0.000000e+00 977
3 TraesCS4A01G122100 chr4B 94.488 254 3 5 2011 2262 399193434 399193678 7.680000e-102 381
4 TraesCS4A01G122100 chr4B 97.585 207 5 0 2982 3188 399194394 399194600 4.650000e-94 355
5 TraesCS4A01G122100 chr4B 96.703 91 3 0 213 303 399191773 399191863 6.550000e-33 152
6 TraesCS4A01G122100 chr4B 91.209 91 5 3 881 971 585957058 585956971 1.850000e-23 121
7 TraesCS4A01G122100 chr4D 95.386 1322 40 10 621 1934 321917159 321915851 0.000000e+00 2084
8 TraesCS4A01G122100 chr4D 92.032 1142 51 25 2051 3188 321915532 321914427 0.000000e+00 1568
9 TraesCS4A01G122100 chr4D 91.909 482 37 2 3213 3693 474914792 474914312 0.000000e+00 673
10 TraesCS4A01G122100 chr4D 93.617 188 10 2 118 303 321917347 321917160 2.880000e-71 279
11 TraesCS4A01G122100 chr4D 98.462 130 2 0 1920 2049 321915820 321915691 2.940000e-56 230
12 TraesCS4A01G122100 chr2A 89.931 576 36 6 3213 3787 10832377 10831823 0.000000e+00 723
13 TraesCS4A01G122100 chr2A 82.609 322 46 4 303 618 770209191 770208874 3.730000e-70 276
14 TraesCS4A01G122100 chr2A 74.085 328 71 11 301 619 560681437 560681759 5.140000e-24 122
15 TraesCS4A01G122100 chr7D 92.653 490 34 2 3205 3693 123137395 123137883 0.000000e+00 704
16 TraesCS4A01G122100 chr2D 92.739 482 33 2 3213 3693 400288915 400288435 0.000000e+00 695
17 TraesCS4A01G122100 chr2D 92.116 482 36 2 3213 3693 332825700 332826180 0.000000e+00 678
18 TraesCS4A01G122100 chr2D 81.597 288 43 5 303 582 648698068 648697783 2.940000e-56 230
19 TraesCS4A01G122100 chr7A 88.966 580 37 6 3214 3786 342531049 342530490 0.000000e+00 691
20 TraesCS4A01G122100 chr7A 92.371 485 36 1 3210 3693 662589302 662589786 0.000000e+00 689
21 TraesCS4A01G122100 chr7A 83.051 177 25 3 441 617 668251433 668251262 5.060000e-34 156
22 TraesCS4A01G122100 chr3A 88.581 578 49 15 3212 3786 712478310 712477747 0.000000e+00 686
23 TraesCS4A01G122100 chr3A 82.079 279 42 4 301 579 724800322 724800052 8.180000e-57 231
24 TraesCS4A01G122100 chr5D 92.453 477 34 2 3219 3693 85921690 85921214 0.000000e+00 680
25 TraesCS4A01G122100 chr7B 80.864 324 48 11 303 618 674591650 674591967 3.780000e-60 243
26 TraesCS4A01G122100 chr1B 80.243 329 53 7 300 618 465270032 465270358 1.760000e-58 237
27 TraesCS4A01G122100 chr6A 83.105 219 33 3 401 618 20711179 20710964 2.980000e-46 196
28 TraesCS4A01G122100 chr6B 77.231 325 64 8 300 620 32732363 32732681 8.360000e-42 182


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G122100 chr4A 150865231 150869017 3786 False 6994.00 6994 100.00000 1 3787 1 chr4A.!!$F1 3786
1 TraesCS4A01G122100 chr4B 399191773 399194600 2827 False 795.60 2113 95.69780 213 3188 5 chr4B.!!$F1 2975
2 TraesCS4A01G122100 chr4D 321914427 321917347 2920 True 1040.25 2084 94.87425 118 3188 4 chr4D.!!$R2 3070
3 TraesCS4A01G122100 chr2A 10831823 10832377 554 True 723.00 723 89.93100 3213 3787 1 chr2A.!!$R1 574
4 TraesCS4A01G122100 chr7A 342530490 342531049 559 True 691.00 691 88.96600 3214 3786 1 chr7A.!!$R1 572
5 TraesCS4A01G122100 chr3A 712477747 712478310 563 True 686.00 686 88.58100 3212 3786 1 chr3A.!!$R1 574

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
548 551 0.035036 TGTTGGTCCCGACGCAATAA 59.965 50.0 0.0 0.0 33.16 1.40 F
663 666 0.179111 CGATGGGCGACACATACACT 60.179 55.0 0.0 0.0 44.57 3.55 F
1551 1575 0.798159 GCTCGTGTGCATCATGAACA 59.202 50.0 0.0 0.0 40.93 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1528 1552 1.081094 CATGATGCACACGAGCTTGA 58.919 50.0 8.31 0.00 34.99 3.02 R
1894 1918 2.312424 ATTTTGTAGGCCGGGGAAAA 57.688 45.0 2.18 2.21 0.00 2.29 R
3276 3804 0.672401 AACCGGCACTAATGGACACG 60.672 55.0 0.00 0.00 0.00 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.915349 CATGTCCAGAGATGACTTGGG 58.085 52.381 0.00 0.00 34.35 4.12
21 22 2.030027 TGTCCAGAGATGACTTGGGT 57.970 50.000 0.00 0.00 33.83 4.51
22 23 1.902508 TGTCCAGAGATGACTTGGGTC 59.097 52.381 0.00 0.00 42.42 4.46
23 24 1.134965 GTCCAGAGATGACTTGGGTCG 60.135 57.143 0.00 0.00 44.83 4.79
24 25 0.176680 CCAGAGATGACTTGGGTCGG 59.823 60.000 0.00 0.00 44.83 4.79
25 26 0.898320 CAGAGATGACTTGGGTCGGT 59.102 55.000 0.00 0.00 44.83 4.69
26 27 1.276421 CAGAGATGACTTGGGTCGGTT 59.724 52.381 0.00 0.00 44.83 4.44
27 28 1.550976 AGAGATGACTTGGGTCGGTTC 59.449 52.381 0.00 0.00 44.83 3.62
28 29 0.246635 AGATGACTTGGGTCGGTTCG 59.753 55.000 0.00 0.00 44.83 3.95
29 30 0.739813 GATGACTTGGGTCGGTTCGG 60.740 60.000 0.00 0.00 44.83 4.30
30 31 2.741211 GACTTGGGTCGGTTCGGC 60.741 66.667 0.00 0.00 32.47 5.54
52 53 3.747099 CGGAGGATGTTTTGCAGTTAG 57.253 47.619 0.00 0.00 0.00 2.34
53 54 3.074412 CGGAGGATGTTTTGCAGTTAGT 58.926 45.455 0.00 0.00 0.00 2.24
54 55 3.125316 CGGAGGATGTTTTGCAGTTAGTC 59.875 47.826 0.00 0.00 0.00 2.59
55 56 4.327680 GGAGGATGTTTTGCAGTTAGTCT 58.672 43.478 0.00 0.00 0.00 3.24
56 57 4.762251 GGAGGATGTTTTGCAGTTAGTCTT 59.238 41.667 0.00 0.00 0.00 3.01
57 58 5.241728 GGAGGATGTTTTGCAGTTAGTCTTT 59.758 40.000 0.00 0.00 0.00 2.52
58 59 6.076981 AGGATGTTTTGCAGTTAGTCTTTG 57.923 37.500 0.00 0.00 0.00 2.77
59 60 5.827797 AGGATGTTTTGCAGTTAGTCTTTGA 59.172 36.000 0.00 0.00 0.00 2.69
60 61 6.491403 AGGATGTTTTGCAGTTAGTCTTTGAT 59.509 34.615 0.00 0.00 0.00 2.57
61 62 6.583806 GGATGTTTTGCAGTTAGTCTTTGATG 59.416 38.462 0.00 0.00 0.00 3.07
62 63 6.691754 TGTTTTGCAGTTAGTCTTTGATGA 57.308 33.333 0.00 0.00 0.00 2.92
63 64 7.275888 TGTTTTGCAGTTAGTCTTTGATGAT 57.724 32.000 0.00 0.00 0.00 2.45
64 65 7.715657 TGTTTTGCAGTTAGTCTTTGATGATT 58.284 30.769 0.00 0.00 0.00 2.57
65 66 7.648908 TGTTTTGCAGTTAGTCTTTGATGATTG 59.351 33.333 0.00 0.00 0.00 2.67
66 67 6.882610 TTGCAGTTAGTCTTTGATGATTGT 57.117 33.333 0.00 0.00 0.00 2.71
67 68 7.977789 TTGCAGTTAGTCTTTGATGATTGTA 57.022 32.000 0.00 0.00 0.00 2.41
68 69 7.977789 TGCAGTTAGTCTTTGATGATTGTAA 57.022 32.000 0.00 0.00 0.00 2.41
69 70 8.389779 TGCAGTTAGTCTTTGATGATTGTAAA 57.610 30.769 0.00 0.00 0.00 2.01
70 71 8.506437 TGCAGTTAGTCTTTGATGATTGTAAAG 58.494 33.333 0.00 0.00 33.77 1.85
71 72 8.721478 GCAGTTAGTCTTTGATGATTGTAAAGA 58.279 33.333 0.00 0.00 37.91 2.52
78 79 7.874940 TCTTTGATGATTGTAAAGACTTGGTG 58.125 34.615 0.00 0.00 36.00 4.17
79 80 7.719193 TCTTTGATGATTGTAAAGACTTGGTGA 59.281 33.333 0.00 0.00 36.00 4.02
80 81 7.815840 TTGATGATTGTAAAGACTTGGTGAA 57.184 32.000 0.00 0.00 0.00 3.18
81 82 8.408043 TTGATGATTGTAAAGACTTGGTGAAT 57.592 30.769 0.00 0.00 0.00 2.57
82 83 9.513906 TTGATGATTGTAAAGACTTGGTGAATA 57.486 29.630 0.00 0.00 0.00 1.75
83 84 9.513906 TGATGATTGTAAAGACTTGGTGAATAA 57.486 29.630 0.00 0.00 0.00 1.40
84 85 9.994432 GATGATTGTAAAGACTTGGTGAATAAG 57.006 33.333 0.00 0.00 0.00 1.73
85 86 8.918202 TGATTGTAAAGACTTGGTGAATAAGT 57.082 30.769 0.00 0.00 40.84 2.24
93 94 8.475331 AAGACTTGGTGAATAAGTAATACACG 57.525 34.615 0.00 0.00 38.42 4.49
94 95 7.609056 AGACTTGGTGAATAAGTAATACACGT 58.391 34.615 0.00 0.00 38.42 4.49
95 96 8.742777 AGACTTGGTGAATAAGTAATACACGTA 58.257 33.333 0.00 0.00 38.42 3.57
96 97 9.525409 GACTTGGTGAATAAGTAATACACGTAT 57.475 33.333 0.00 0.00 38.42 3.06
97 98 9.880157 ACTTGGTGAATAAGTAATACACGTATT 57.120 29.630 7.54 7.54 42.31 1.89
172 173 2.483889 GGGTCGGCTTCATTAAGGAGAG 60.484 54.545 0.00 0.00 32.98 3.20
204 207 6.147328 ACAGAGGCGTTAATTACAAGTTCTTC 59.853 38.462 0.00 0.00 0.00 2.87
207 210 7.444487 AGAGGCGTTAATTACAAGTTCTTCTTT 59.556 33.333 0.00 0.00 33.63 2.52
208 211 7.937649 AGGCGTTAATTACAAGTTCTTCTTTT 58.062 30.769 0.00 0.00 33.63 2.27
211 214 7.858879 GCGTTAATTACAAGTTCTTCTTTTCCA 59.141 33.333 0.00 0.00 33.63 3.53
292 295 2.429250 TCCATCGACCGACACATGTAAT 59.571 45.455 0.00 0.00 0.00 1.89
303 306 5.176406 CCGACACATGTAATCAGCTGATTAG 59.824 44.000 37.70 29.78 44.79 1.73
304 307 5.979517 CGACACATGTAATCAGCTGATTAGA 59.020 40.000 37.70 36.36 44.79 2.10
305 308 6.143598 CGACACATGTAATCAGCTGATTAGAG 59.856 42.308 37.70 31.02 44.79 2.43
306 309 5.757320 ACACATGTAATCAGCTGATTAGAGC 59.243 40.000 37.70 28.63 44.79 4.09
307 310 5.756833 CACATGTAATCAGCTGATTAGAGCA 59.243 40.000 37.70 31.99 44.79 4.26
308 311 6.427242 CACATGTAATCAGCTGATTAGAGCAT 59.573 38.462 37.70 32.51 44.79 3.79
309 312 6.649973 ACATGTAATCAGCTGATTAGAGCATC 59.350 38.462 37.70 27.51 44.79 3.91
310 313 6.416631 TGTAATCAGCTGATTAGAGCATCT 57.583 37.500 37.70 19.74 44.79 2.90
311 314 6.453943 TGTAATCAGCTGATTAGAGCATCTC 58.546 40.000 37.70 26.41 43.02 2.75
312 315 4.897140 AATCAGCTGATTAGAGCATCTCC 58.103 43.478 35.06 0.00 42.48 3.71
313 316 4.347292 AATCAGCTGATTAGAGCATCTCCA 59.653 41.667 35.06 1.43 42.48 3.86
314 317 5.163227 AATCAGCTGATTAGAGCATCTCCAA 60.163 40.000 35.06 1.02 42.48 3.53
315 318 7.185867 AATCAGCTGATTAGAGCATCTCCAAC 61.186 42.308 35.06 0.00 42.48 3.77
316 319 9.478524 AATCAGCTGATTAGAGCATCTCCAACA 62.479 40.741 35.06 0.30 42.48 3.33
321 324 2.378028 GAGCATCTCCAACAGACGC 58.622 57.895 0.00 0.00 40.90 5.19
322 325 1.078848 AGCATCTCCAACAGACGCC 60.079 57.895 0.00 0.00 41.57 5.68
323 326 2.109126 GCATCTCCAACAGACGCCC 61.109 63.158 0.00 0.00 33.99 6.13
324 327 1.296392 CATCTCCAACAGACGCCCA 59.704 57.895 0.00 0.00 32.26 5.36
325 328 0.321564 CATCTCCAACAGACGCCCAA 60.322 55.000 0.00 0.00 32.26 4.12
326 329 0.400213 ATCTCCAACAGACGCCCAAA 59.600 50.000 0.00 0.00 32.26 3.28
327 330 0.181587 TCTCCAACAGACGCCCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
328 331 1.028905 CTCCAACAGACGCCCAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
343 346 4.371975 AAAAAGCTCCGCGTGCTA 57.628 50.000 21.08 0.00 40.22 3.49
344 347 2.162716 AAAAAGCTCCGCGTGCTAG 58.837 52.632 21.08 7.35 40.22 3.42
345 348 0.320421 AAAAAGCTCCGCGTGCTAGA 60.320 50.000 21.08 3.20 40.22 2.43
346 349 0.320421 AAAAGCTCCGCGTGCTAGAA 60.320 50.000 21.08 0.00 40.22 2.10
347 350 0.320421 AAAGCTCCGCGTGCTAGAAA 60.320 50.000 21.08 0.00 40.22 2.52
348 351 0.108138 AAGCTCCGCGTGCTAGAAAT 60.108 50.000 21.08 5.65 40.22 2.17
349 352 0.108138 AGCTCCGCGTGCTAGAAATT 60.108 50.000 19.77 0.00 39.21 1.82
350 353 0.727398 GCTCCGCGTGCTAGAAATTT 59.273 50.000 4.92 0.00 0.00 1.82
351 354 1.931172 GCTCCGCGTGCTAGAAATTTA 59.069 47.619 4.92 0.00 0.00 1.40
352 355 2.544267 GCTCCGCGTGCTAGAAATTTAT 59.456 45.455 4.92 0.00 0.00 1.40
353 356 3.002348 GCTCCGCGTGCTAGAAATTTATT 59.998 43.478 4.92 0.00 0.00 1.40
354 357 4.495844 GCTCCGCGTGCTAGAAATTTATTT 60.496 41.667 4.92 0.00 0.00 1.40
355 358 5.554822 TCCGCGTGCTAGAAATTTATTTT 57.445 34.783 4.92 0.00 0.00 1.82
356 359 5.945155 TCCGCGTGCTAGAAATTTATTTTT 58.055 33.333 4.92 0.00 0.00 1.94
372 375 2.624169 TTTTTAGCGCCGAACAGCT 58.376 47.368 2.29 0.00 46.53 4.24
373 376 0.515564 TTTTTAGCGCCGAACAGCTC 59.484 50.000 2.29 0.00 43.44 4.09
374 377 1.296056 TTTTAGCGCCGAACAGCTCC 61.296 55.000 2.29 0.00 43.44 4.70
375 378 2.443260 TTTAGCGCCGAACAGCTCCA 62.443 55.000 2.29 0.00 43.44 3.86
376 379 2.443260 TTAGCGCCGAACAGCTCCAA 62.443 55.000 2.29 0.00 43.44 3.53
377 380 4.090057 GCGCCGAACAGCTCCAAC 62.090 66.667 0.00 0.00 0.00 3.77
378 381 2.664851 CGCCGAACAGCTCCAACA 60.665 61.111 0.00 0.00 0.00 3.33
379 382 2.671177 CGCCGAACAGCTCCAACAG 61.671 63.158 0.00 0.00 0.00 3.16
380 383 1.598130 GCCGAACAGCTCCAACAGT 60.598 57.895 0.00 0.00 0.00 3.55
381 384 0.320421 GCCGAACAGCTCCAACAGTA 60.320 55.000 0.00 0.00 0.00 2.74
382 385 1.876416 GCCGAACAGCTCCAACAGTAA 60.876 52.381 0.00 0.00 0.00 2.24
383 386 2.489971 CCGAACAGCTCCAACAGTAAA 58.510 47.619 0.00 0.00 0.00 2.01
384 387 2.875933 CCGAACAGCTCCAACAGTAAAA 59.124 45.455 0.00 0.00 0.00 1.52
385 388 3.502211 CCGAACAGCTCCAACAGTAAAAT 59.498 43.478 0.00 0.00 0.00 1.82
386 389 4.693566 CCGAACAGCTCCAACAGTAAAATA 59.306 41.667 0.00 0.00 0.00 1.40
387 390 5.354234 CCGAACAGCTCCAACAGTAAAATAT 59.646 40.000 0.00 0.00 0.00 1.28
388 391 6.128007 CCGAACAGCTCCAACAGTAAAATATT 60.128 38.462 0.00 0.00 0.00 1.28
389 392 6.742718 CGAACAGCTCCAACAGTAAAATATTG 59.257 38.462 0.00 0.00 0.00 1.90
390 393 5.954335 ACAGCTCCAACAGTAAAATATTGC 58.046 37.500 0.00 0.00 0.00 3.56
391 394 5.030295 CAGCTCCAACAGTAAAATATTGCG 58.970 41.667 0.00 0.00 0.00 4.85
392 395 3.791353 GCTCCAACAGTAAAATATTGCGC 59.209 43.478 0.00 0.00 0.00 6.09
393 396 4.009798 TCCAACAGTAAAATATTGCGCG 57.990 40.909 0.00 0.00 0.00 6.86
394 397 2.529894 CCAACAGTAAAATATTGCGCGC 59.470 45.455 27.26 27.26 0.00 6.86
395 398 2.085532 ACAGTAAAATATTGCGCGCG 57.914 45.000 28.44 28.44 0.00 6.86
396 399 1.395608 ACAGTAAAATATTGCGCGCGT 59.604 42.857 32.35 20.07 0.00 6.01
397 400 2.159626 ACAGTAAAATATTGCGCGCGTT 60.160 40.909 32.35 18.62 0.00 4.84
398 401 3.062369 ACAGTAAAATATTGCGCGCGTTA 59.938 39.130 32.35 20.28 0.00 3.18
399 402 4.023128 CAGTAAAATATTGCGCGCGTTAA 58.977 39.130 32.35 25.57 0.00 2.01
400 403 4.492645 CAGTAAAATATTGCGCGCGTTAAA 59.507 37.500 32.35 22.63 0.00 1.52
401 404 5.002654 CAGTAAAATATTGCGCGCGTTAAAA 59.997 36.000 32.35 20.11 0.00 1.52
402 405 4.887763 AAAATATTGCGCGCGTTAAAAA 57.112 31.818 32.35 14.53 0.00 1.94
403 406 4.477946 AAATATTGCGCGCGTTAAAAAG 57.522 36.364 32.35 0.04 0.00 2.27
404 407 2.598000 TATTGCGCGCGTTAAAAAGT 57.402 40.000 32.35 13.68 0.00 2.66
405 408 1.761206 ATTGCGCGCGTTAAAAAGTT 58.239 40.000 32.35 8.75 0.00 2.66
406 409 1.546834 TTGCGCGCGTTAAAAAGTTT 58.453 40.000 32.35 0.00 0.00 2.66
407 410 1.546834 TGCGCGCGTTAAAAAGTTTT 58.453 40.000 32.35 0.00 0.00 2.43
408 411 1.253034 TGCGCGCGTTAAAAAGTTTTG 59.747 42.857 32.35 0.00 0.00 2.44
409 412 1.394957 GCGCGCGTTAAAAAGTTTTGG 60.395 47.619 32.35 0.00 0.00 3.28
410 413 1.188355 CGCGCGTTAAAAAGTTTTGGG 59.812 47.619 24.19 0.00 0.00 4.12
411 414 1.071107 GCGCGTTAAAAAGTTTTGGGC 60.071 47.619 8.43 5.74 0.00 5.36
412 415 2.194271 CGCGTTAAAAAGTTTTGGGCA 58.806 42.857 0.61 0.00 0.00 5.36
413 416 2.034423 CGCGTTAAAAAGTTTTGGGCAC 60.034 45.455 0.61 0.00 0.00 5.01
414 417 2.930682 GCGTTAAAAAGTTTTGGGCACA 59.069 40.909 0.61 0.00 0.00 4.57
415 418 3.242155 GCGTTAAAAAGTTTTGGGCACAC 60.242 43.478 0.61 0.00 0.00 3.82
416 419 3.000575 CGTTAAAAAGTTTTGGGCACACG 60.001 43.478 0.61 1.57 0.00 4.49
417 420 2.017138 AAAAAGTTTTGGGCACACGG 57.983 45.000 0.61 0.00 0.00 4.94
418 421 0.899019 AAAAGTTTTGGGCACACGGT 59.101 45.000 0.00 0.00 0.00 4.83
419 422 0.174617 AAAGTTTTGGGCACACGGTG 59.825 50.000 6.58 6.58 36.51 4.94
420 423 0.681564 AAGTTTTGGGCACACGGTGA 60.682 50.000 16.29 0.00 35.23 4.02
421 424 0.681564 AGTTTTGGGCACACGGTGAA 60.682 50.000 16.29 0.00 35.23 3.18
422 425 0.173708 GTTTTGGGCACACGGTGAAA 59.826 50.000 16.29 1.36 35.23 2.69
423 426 0.895530 TTTTGGGCACACGGTGAAAA 59.104 45.000 16.29 7.77 35.23 2.29
424 427 0.895530 TTTGGGCACACGGTGAAAAA 59.104 45.000 16.29 5.00 35.23 1.94
425 428 0.173708 TTGGGCACACGGTGAAAAAC 59.826 50.000 16.29 1.73 35.23 2.43
426 429 1.298788 GGGCACACGGTGAAAAACG 60.299 57.895 16.29 0.00 35.23 3.60
427 430 1.942223 GGCACACGGTGAAAAACGC 60.942 57.895 16.29 6.95 35.23 4.84
428 431 1.063488 GCACACGGTGAAAAACGCT 59.937 52.632 16.29 0.00 35.23 5.07
429 432 0.305313 GCACACGGTGAAAAACGCTA 59.695 50.000 16.29 0.00 35.23 4.26
430 433 1.069500 GCACACGGTGAAAAACGCTAT 60.069 47.619 16.29 0.00 35.23 2.97
431 434 2.834689 CACACGGTGAAAAACGCTATC 58.165 47.619 16.29 0.00 35.23 2.08
432 435 2.478894 CACACGGTGAAAAACGCTATCT 59.521 45.455 16.29 0.00 35.23 1.98
433 436 2.735134 ACACGGTGAAAAACGCTATCTC 59.265 45.455 16.29 0.00 0.00 2.75
434 437 1.990563 ACGGTGAAAAACGCTATCTCG 59.009 47.619 0.00 0.00 0.00 4.04
435 438 1.266891 CGGTGAAAAACGCTATCTCGC 60.267 52.381 0.00 0.00 0.00 5.03
443 446 3.254654 GCTATCTCGCGCGCAACA 61.255 61.111 32.61 13.99 0.00 3.33
444 447 2.589492 GCTATCTCGCGCGCAACAT 61.589 57.895 32.61 20.17 0.00 2.71
445 448 1.275471 GCTATCTCGCGCGCAACATA 61.275 55.000 32.61 20.20 0.00 2.29
446 449 1.340658 CTATCTCGCGCGCAACATAT 58.659 50.000 32.61 17.86 0.00 1.78
447 450 1.721389 CTATCTCGCGCGCAACATATT 59.279 47.619 32.61 10.81 0.00 1.28
448 451 0.937304 ATCTCGCGCGCAACATATTT 59.063 45.000 32.61 3.62 0.00 1.40
449 452 0.724549 TCTCGCGCGCAACATATTTT 59.275 45.000 32.61 0.00 0.00 1.82
450 453 0.833264 CTCGCGCGCAACATATTTTG 59.167 50.000 32.61 10.59 0.00 2.44
451 454 0.522286 TCGCGCGCAACATATTTTGG 60.522 50.000 32.61 10.01 0.00 3.28
452 455 1.470699 CGCGCGCAACATATTTTGGG 61.471 55.000 32.61 12.88 41.23 4.12
457 460 3.995412 CGCAACATATTTTGGGCTTTG 57.005 42.857 5.81 0.00 33.26 2.77
458 461 2.672381 CGCAACATATTTTGGGCTTTGG 59.328 45.455 5.81 0.00 33.26 3.28
459 462 3.616076 CGCAACATATTTTGGGCTTTGGA 60.616 43.478 5.81 0.00 33.26 3.53
460 463 4.516323 GCAACATATTTTGGGCTTTGGAT 58.484 39.130 3.87 0.00 0.00 3.41
461 464 4.943093 GCAACATATTTTGGGCTTTGGATT 59.057 37.500 3.87 0.00 0.00 3.01
462 465 6.112058 GCAACATATTTTGGGCTTTGGATTA 58.888 36.000 3.87 0.00 0.00 1.75
463 466 6.037062 GCAACATATTTTGGGCTTTGGATTAC 59.963 38.462 3.87 0.00 0.00 1.89
464 467 5.901552 ACATATTTTGGGCTTTGGATTACG 58.098 37.500 0.00 0.00 0.00 3.18
465 468 2.734276 TTTTGGGCTTTGGATTACGC 57.266 45.000 0.00 0.00 0.00 4.42
466 469 0.523966 TTTGGGCTTTGGATTACGCG 59.476 50.000 3.53 3.53 0.00 6.01
467 470 1.928706 TTGGGCTTTGGATTACGCGC 61.929 55.000 5.73 0.00 36.09 6.86
468 471 2.403378 GGGCTTTGGATTACGCGCA 61.403 57.895 5.73 0.00 35.68 6.09
469 472 1.226295 GGCTTTGGATTACGCGCAC 60.226 57.895 5.73 0.00 0.00 5.34
470 473 1.644786 GGCTTTGGATTACGCGCACT 61.645 55.000 5.73 0.00 0.00 4.40
471 474 0.168128 GCTTTGGATTACGCGCACTT 59.832 50.000 5.73 0.00 0.00 3.16
472 475 1.790481 GCTTTGGATTACGCGCACTTC 60.790 52.381 5.73 0.00 0.00 3.01
473 476 1.463056 CTTTGGATTACGCGCACTTCA 59.537 47.619 5.73 0.00 0.00 3.02
474 477 1.732941 TTGGATTACGCGCACTTCAT 58.267 45.000 5.73 0.00 0.00 2.57
475 478 2.588027 TGGATTACGCGCACTTCATA 57.412 45.000 5.73 0.00 0.00 2.15
476 479 2.894902 TGGATTACGCGCACTTCATAA 58.105 42.857 5.73 0.00 0.00 1.90
477 480 3.462982 TGGATTACGCGCACTTCATAAT 58.537 40.909 5.73 0.00 0.00 1.28
478 481 3.874543 TGGATTACGCGCACTTCATAATT 59.125 39.130 5.73 0.00 0.00 1.40
479 482 4.334203 TGGATTACGCGCACTTCATAATTT 59.666 37.500 5.73 0.00 0.00 1.82
480 483 4.670621 GGATTACGCGCACTTCATAATTTG 59.329 41.667 5.73 0.00 0.00 2.32
481 484 1.895051 ACGCGCACTTCATAATTTGC 58.105 45.000 5.73 0.00 0.00 3.68
482 485 1.198867 ACGCGCACTTCATAATTTGCA 59.801 42.857 5.73 0.00 34.49 4.08
483 486 1.578915 CGCGCACTTCATAATTTGCAC 59.421 47.619 8.75 0.00 34.49 4.57
484 487 2.728846 CGCGCACTTCATAATTTGCACT 60.729 45.455 8.75 0.00 34.49 4.40
485 488 2.595536 GCGCACTTCATAATTTGCACTG 59.404 45.455 0.30 0.00 34.49 3.66
486 489 2.595536 CGCACTTCATAATTTGCACTGC 59.404 45.455 0.00 0.00 34.49 4.40
487 490 2.595536 GCACTTCATAATTTGCACTGCG 59.404 45.455 0.00 0.00 34.97 5.18
488 491 3.825308 CACTTCATAATTTGCACTGCGT 58.175 40.909 0.00 0.00 0.00 5.24
489 492 3.605056 CACTTCATAATTTGCACTGCGTG 59.395 43.478 4.61 4.61 36.51 5.34
490 493 3.253188 ACTTCATAATTTGCACTGCGTGT 59.747 39.130 9.76 0.00 35.75 4.49
491 494 3.913548 TCATAATTTGCACTGCGTGTT 57.086 38.095 9.76 0.00 35.75 3.32
492 495 4.235939 TCATAATTTGCACTGCGTGTTT 57.764 36.364 9.76 3.48 35.75 2.83
493 496 4.615949 TCATAATTTGCACTGCGTGTTTT 58.384 34.783 9.76 3.22 35.75 2.43
494 497 5.046529 TCATAATTTGCACTGCGTGTTTTT 58.953 33.333 9.76 3.47 35.75 1.94
514 517 5.489011 TTTTTAGACGCGCATTTTTAAGC 57.511 34.783 5.73 0.00 0.00 3.09
525 528 5.772032 GCATTTTTAAGCGTTTGCAAAAG 57.228 34.783 19.18 19.18 46.23 2.27
526 529 4.144561 GCATTTTTAAGCGTTTGCAAAAGC 59.855 37.500 33.76 33.76 46.23 3.51
527 530 4.928661 TTTTTAAGCGTTTGCAAAAGCA 57.071 31.818 38.67 23.98 44.19 3.91
528 531 4.928661 TTTTAAGCGTTTGCAAAAGCAA 57.071 31.818 38.67 27.30 44.19 3.91
529 532 5.476752 TTTTAAGCGTTTGCAAAAGCAAT 57.523 30.435 38.67 30.80 44.19 3.56
530 533 4.449870 TTAAGCGTTTGCAAAAGCAATG 57.550 36.364 38.67 16.05 44.19 2.82
531 534 1.938625 AGCGTTTGCAAAAGCAATGT 58.061 40.000 38.67 23.07 44.19 2.71
532 535 2.278854 AGCGTTTGCAAAAGCAATGTT 58.721 38.095 38.67 22.75 44.19 2.71
533 536 2.030701 AGCGTTTGCAAAAGCAATGTTG 59.969 40.909 38.67 13.49 44.19 3.33
534 537 2.850254 GCGTTTGCAAAAGCAATGTTGG 60.850 45.455 35.04 9.10 41.91 3.77
535 538 2.351111 CGTTTGCAAAAGCAATGTTGGT 59.649 40.909 14.67 0.00 41.27 3.67
536 539 3.543852 CGTTTGCAAAAGCAATGTTGGTC 60.544 43.478 14.67 0.00 38.04 4.02
537 540 2.237393 TGCAAAAGCAATGTTGGTCC 57.763 45.000 0.00 0.00 38.04 4.46
538 541 1.202627 TGCAAAAGCAATGTTGGTCCC 60.203 47.619 0.00 0.00 38.04 4.46
539 542 1.782044 CAAAAGCAATGTTGGTCCCG 58.218 50.000 0.00 0.00 38.04 5.14
540 543 1.339610 CAAAAGCAATGTTGGTCCCGA 59.660 47.619 0.00 0.00 38.04 5.14
541 544 0.958822 AAAGCAATGTTGGTCCCGAC 59.041 50.000 0.00 0.00 38.04 4.79
542 545 1.234615 AAGCAATGTTGGTCCCGACG 61.235 55.000 0.00 0.00 38.04 5.12
543 546 2.867472 CAATGTTGGTCCCGACGC 59.133 61.111 0.00 0.00 33.16 5.19
544 547 1.963855 CAATGTTGGTCCCGACGCA 60.964 57.895 0.00 0.00 33.16 5.24
545 548 1.228003 AATGTTGGTCCCGACGCAA 60.228 52.632 0.00 0.00 33.16 4.85
546 549 0.608035 AATGTTGGTCCCGACGCAAT 60.608 50.000 0.00 0.00 33.16 3.56
547 550 0.250793 ATGTTGGTCCCGACGCAATA 59.749 50.000 0.00 1.87 33.16 1.90
548 551 0.035036 TGTTGGTCCCGACGCAATAA 59.965 50.000 0.00 0.00 33.16 1.40
549 552 1.158434 GTTGGTCCCGACGCAATAAA 58.842 50.000 0.00 0.00 0.00 1.40
550 553 1.536331 GTTGGTCCCGACGCAATAAAA 59.464 47.619 0.00 0.00 0.00 1.52
551 554 1.893544 TGGTCCCGACGCAATAAAAA 58.106 45.000 0.00 0.00 0.00 1.94
552 555 2.438411 TGGTCCCGACGCAATAAAAAT 58.562 42.857 0.00 0.00 0.00 1.82
553 556 2.162608 TGGTCCCGACGCAATAAAAATG 59.837 45.455 0.00 0.00 0.00 2.32
554 557 2.182014 GTCCCGACGCAATAAAAATGC 58.818 47.619 0.00 0.00 40.41 3.56
555 558 2.088423 TCCCGACGCAATAAAAATGCT 58.912 42.857 0.00 0.00 41.64 3.79
556 559 3.064271 GTCCCGACGCAATAAAAATGCTA 59.936 43.478 0.00 0.00 41.64 3.49
557 560 3.880490 TCCCGACGCAATAAAAATGCTAT 59.120 39.130 0.00 0.00 41.64 2.97
558 561 5.049954 GTCCCGACGCAATAAAAATGCTATA 60.050 40.000 0.00 0.00 41.64 1.31
559 562 5.527951 TCCCGACGCAATAAAAATGCTATAA 59.472 36.000 0.00 0.00 41.64 0.98
560 563 6.205853 TCCCGACGCAATAAAAATGCTATAAT 59.794 34.615 0.00 0.00 41.64 1.28
561 564 6.305399 CCCGACGCAATAAAAATGCTATAATG 59.695 38.462 0.00 0.00 41.64 1.90
562 565 7.075121 CCGACGCAATAAAAATGCTATAATGA 58.925 34.615 0.00 0.00 41.64 2.57
563 566 7.750458 CCGACGCAATAAAAATGCTATAATGAT 59.250 33.333 0.00 0.00 41.64 2.45
564 567 8.569683 CGACGCAATAAAAATGCTATAATGATG 58.430 33.333 0.00 0.00 41.64 3.07
565 568 8.231304 ACGCAATAAAAATGCTATAATGATGC 57.769 30.769 0.00 0.00 41.64 3.91
566 569 7.378047 CGCAATAAAAATGCTATAATGATGCG 58.622 34.615 0.00 0.00 43.18 4.73
567 570 7.168796 GCAATAAAAATGCTATAATGATGCGC 58.831 34.615 0.00 0.00 40.64 6.09
568 571 7.062605 GCAATAAAAATGCTATAATGATGCGCT 59.937 33.333 9.73 0.00 40.64 5.92
569 572 9.558648 CAATAAAAATGCTATAATGATGCGCTA 57.441 29.630 9.73 0.00 0.00 4.26
584 587 7.621832 TGATGCGCTATAATTTTTATTGTGC 57.378 32.000 9.73 15.47 36.95 4.57
585 588 6.359352 TGATGCGCTATAATTTTTATTGTGCG 59.641 34.615 9.73 14.61 43.05 5.34
589 592 7.830217 CGCTATAATTTTTATTGTGCGCTAA 57.170 32.000 9.73 4.30 34.80 3.09
590 593 8.264022 CGCTATAATTTTTATTGTGCGCTAAA 57.736 30.769 9.73 2.92 34.80 1.85
591 594 8.901748 CGCTATAATTTTTATTGTGCGCTAAAT 58.098 29.630 9.73 11.07 34.80 1.40
599 602 9.535270 TTTTTATTGTGCGCTAAATTTTTATGC 57.465 25.926 9.73 0.00 0.00 3.14
600 603 4.814569 TTGTGCGCTAAATTTTTATGCG 57.185 36.364 9.73 17.11 40.17 4.73
601 604 3.175152 TGTGCGCTAAATTTTTATGCGG 58.825 40.909 9.73 9.32 38.95 5.69
602 605 2.034926 GTGCGCTAAATTTTTATGCGGC 60.035 45.455 9.73 15.43 38.95 6.53
603 606 2.159310 TGCGCTAAATTTTTATGCGGCT 60.159 40.909 9.73 0.00 38.95 5.52
604 607 2.216263 GCGCTAAATTTTTATGCGGCTG 59.784 45.455 20.40 0.00 38.95 4.85
605 608 3.434637 CGCTAAATTTTTATGCGGCTGT 58.565 40.909 15.00 0.00 37.01 4.40
606 609 3.857093 CGCTAAATTTTTATGCGGCTGTT 59.143 39.130 15.00 0.00 37.01 3.16
607 610 4.259371 CGCTAAATTTTTATGCGGCTGTTG 60.259 41.667 15.00 0.00 37.01 3.33
608 611 4.032786 GCTAAATTTTTATGCGGCTGTTGG 59.967 41.667 0.00 0.00 0.00 3.77
609 612 3.951775 AATTTTTATGCGGCTGTTGGA 57.048 38.095 0.00 0.00 0.00 3.53
610 613 3.508744 ATTTTTATGCGGCTGTTGGAG 57.491 42.857 0.00 0.00 0.00 3.86
611 614 2.192664 TTTTATGCGGCTGTTGGAGA 57.807 45.000 0.00 0.00 0.00 3.71
612 615 2.418368 TTTATGCGGCTGTTGGAGAT 57.582 45.000 0.00 0.00 0.00 2.75
613 616 1.667236 TTATGCGGCTGTTGGAGATG 58.333 50.000 0.00 0.00 0.00 2.90
614 617 0.815213 TATGCGGCTGTTGGAGATGC 60.815 55.000 0.00 0.00 0.00 3.91
615 618 2.437359 GCGGCTGTTGGAGATGCT 60.437 61.111 0.00 0.00 0.00 3.79
616 619 2.467826 GCGGCTGTTGGAGATGCTC 61.468 63.158 0.00 0.00 0.00 4.26
617 620 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
618 621 0.392193 CGGCTGTTGGAGATGCTCTT 60.392 55.000 0.00 0.00 0.00 2.85
619 622 1.093159 GGCTGTTGGAGATGCTCTTG 58.907 55.000 0.00 0.00 0.00 3.02
625 628 3.519107 TGTTGGAGATGCTCTTGTCCATA 59.481 43.478 3.14 0.00 38.87 2.74
663 666 0.179111 CGATGGGCGACACATACACT 60.179 55.000 0.00 0.00 44.57 3.55
860 864 3.671410 CCATGGGGTGGCCAGGAA 61.671 66.667 5.11 0.00 42.12 3.36
928 932 1.528129 CAAGAGCAAGAGGGGTCAAC 58.472 55.000 0.00 0.00 37.74 3.18
948 952 2.104281 ACCGACCACTTTGCTCTAGTTT 59.896 45.455 0.00 0.00 0.00 2.66
1086 1094 5.745294 GCACATCATGGTCACAATTTCATAC 59.255 40.000 0.00 0.00 0.00 2.39
1087 1095 5.967088 CACATCATGGTCACAATTTCATACG 59.033 40.000 0.00 0.00 0.00 3.06
1089 1097 6.821160 ACATCATGGTCACAATTTCATACGTA 59.179 34.615 0.00 0.00 0.00 3.57
1090 1098 6.902224 TCATGGTCACAATTTCATACGTAG 57.098 37.500 0.08 0.00 0.00 3.51
1091 1099 6.635755 TCATGGTCACAATTTCATACGTAGA 58.364 36.000 0.08 0.00 0.00 2.59
1092 1100 7.272244 TCATGGTCACAATTTCATACGTAGAT 58.728 34.615 0.08 0.00 0.00 1.98
1093 1101 7.438160 TCATGGTCACAATTTCATACGTAGATC 59.562 37.037 0.08 0.00 0.00 2.75
1094 1102 6.635755 TGGTCACAATTTCATACGTAGATCA 58.364 36.000 0.08 0.00 0.00 2.92
1095 1103 7.100409 TGGTCACAATTTCATACGTAGATCAA 58.900 34.615 0.08 0.00 0.00 2.57
1096 1104 7.277760 TGGTCACAATTTCATACGTAGATCAAG 59.722 37.037 0.08 0.00 0.00 3.02
1097 1105 7.277981 GGTCACAATTTCATACGTAGATCAAGT 59.722 37.037 0.08 0.00 0.00 3.16
1098 1106 9.297586 GTCACAATTTCATACGTAGATCAAGTA 57.702 33.333 0.08 0.00 0.00 2.24
1099 1107 9.516314 TCACAATTTCATACGTAGATCAAGTAG 57.484 33.333 0.08 0.00 0.00 2.57
1210 1233 8.514330 TTACTCCTAGATTGTTTTGTTTGTGT 57.486 30.769 0.00 0.00 0.00 3.72
1233 1256 6.768861 TGTAAGAGAGAAGATGTAGCTAGGTC 59.231 42.308 0.00 0.00 0.00 3.85
1452 1476 1.021390 CCTCCTCACCATCAACACGC 61.021 60.000 0.00 0.00 0.00 5.34
1502 1526 1.452953 CCATCTACCTCGCCTACGCA 61.453 60.000 0.00 0.00 39.84 5.24
1551 1575 0.798159 GCTCGTGTGCATCATGAACA 59.202 50.000 0.00 0.00 40.93 3.18
1673 1697 2.110967 CGTCTTCGTCGCCCCTCTA 61.111 63.158 0.00 0.00 0.00 2.43
1735 1759 3.340337 TCTTCATCTGCATCGTCGTAG 57.660 47.619 0.00 0.00 0.00 3.51
1891 1915 6.952277 GAAAGATTTCTTCGTAGCGGTACGG 61.952 48.000 37.45 26.07 44.38 4.02
2177 2594 3.934068 ACTACTCCCCAACACGTAATTG 58.066 45.455 5.02 5.02 0.00 2.32
2301 2720 5.331902 CCCACACGATGATGTTCAATTAAC 58.668 41.667 0.00 0.00 38.67 2.01
2302 2721 5.021389 CCACACGATGATGTTCAATTAACG 58.979 41.667 0.00 0.00 41.30 3.18
2374 2793 2.200052 GCACTAGCTACCGGAACCT 58.800 57.895 9.46 2.75 37.91 3.50
2427 2846 3.570926 ACGTGTATCTGTGTGTGTAGG 57.429 47.619 0.00 0.00 0.00 3.18
2574 2993 2.333417 CCACTTCAGCAGCAGCAGG 61.333 63.158 3.17 0.00 45.49 4.85
2617 3036 1.882625 TTGCGCCGATCATCGAAGG 60.883 57.895 9.16 0.00 43.74 3.46
2805 3224 3.023832 TGATCTACGTGATGGAGCAGAA 58.976 45.455 0.00 0.00 35.14 3.02
2821 3240 8.354711 TGGAGCAGAATGACCTAACTATATAG 57.645 38.462 8.27 8.27 39.69 1.31
2826 3245 6.749578 CAGAATGACCTAACTATATAGCTGCG 59.250 42.308 9.78 0.00 39.69 5.18
2984 3407 7.734924 TTGGACTACTGGTATATGTACGTAG 57.265 40.000 0.00 10.87 34.04 3.51
2985 3408 6.233434 TGGACTACTGGTATATGTACGTAGG 58.767 44.000 14.61 1.30 33.04 3.18
3152 3680 6.734104 AAGCTCATGTATTTCTTCAGTCAC 57.266 37.500 0.00 0.00 0.00 3.67
3178 3706 6.039616 GTGGTGTTTTTCTTAAGTTGCATCA 58.960 36.000 1.63 0.63 0.00 3.07
3188 3716 8.746922 TTCTTAAGTTGCATCATGATGTTTTC 57.253 30.769 31.09 20.18 40.80 2.29
3189 3717 7.884257 TCTTAAGTTGCATCATGATGTTTTCA 58.116 30.769 31.09 20.03 40.80 2.69
3190 3718 8.525316 TCTTAAGTTGCATCATGATGTTTTCAT 58.475 29.630 31.09 18.04 46.27 2.57
3204 3732 6.655078 ATGTTTTCATCAGTTTTGCCTAGT 57.345 33.333 0.00 0.00 35.32 2.57
3205 3733 7.759489 ATGTTTTCATCAGTTTTGCCTAGTA 57.241 32.000 0.00 0.00 35.32 1.82
3206 3734 6.966021 TGTTTTCATCAGTTTTGCCTAGTAC 58.034 36.000 0.00 0.00 0.00 2.73
3207 3735 6.544197 TGTTTTCATCAGTTTTGCCTAGTACA 59.456 34.615 0.00 0.00 0.00 2.90
3208 3736 6.554334 TTTCATCAGTTTTGCCTAGTACAC 57.446 37.500 0.00 0.00 0.00 2.90
3209 3737 5.483685 TCATCAGTTTTGCCTAGTACACT 57.516 39.130 0.00 0.00 0.00 3.55
3210 3738 6.599356 TCATCAGTTTTGCCTAGTACACTA 57.401 37.500 0.00 0.00 0.00 2.74
3217 3745 6.268387 AGTTTTGCCTAGTACACTACCACTAA 59.732 38.462 0.00 0.00 0.00 2.24
3276 3804 1.448985 TGAATTTGAGCCGGCACTAC 58.551 50.000 31.54 16.95 0.00 2.73
3314 3843 2.443394 CCAATGGCTAGGCGGGAGA 61.443 63.158 12.19 0.00 0.00 3.71
3365 3894 1.177895 TAGTACCGGTTCGTGCCACA 61.178 55.000 15.04 0.00 0.00 4.17
3376 3905 1.837538 CGTGCCACAAACCGGTACTG 61.838 60.000 8.00 11.65 37.03 2.74
3557 4086 5.415701 TCAAATAATCAGAAGCACTTGGTCC 59.584 40.000 0.00 0.00 0.00 4.46
3559 4088 5.957771 ATAATCAGAAGCACTTGGTCCTA 57.042 39.130 0.00 0.00 0.00 2.94
3636 4165 3.543680 ACCGTTGAGGACTCATATTGG 57.456 47.619 2.42 5.66 45.00 3.16
3642 4171 5.163622 CGTTGAGGACTCATATTGGCAATTT 60.164 40.000 19.21 7.79 39.64 1.82
3648 4177 8.773033 AGGACTCATATTGGCAATTTAGATTT 57.227 30.769 19.21 4.54 0.00 2.17
3740 4269 1.968493 TGTTTACGCCCTCACTCTCTT 59.032 47.619 0.00 0.00 0.00 2.85
3777 4312 1.609794 ACTCGGTCTCCCCCTCAAC 60.610 63.158 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.238144 ACCCAAGTCATCTCTGGACATG 59.762 50.000 0.00 0.00 37.74 3.21
1 2 2.503356 GACCCAAGTCATCTCTGGACAT 59.497 50.000 0.00 0.00 42.99 3.06
2 3 1.902508 GACCCAAGTCATCTCTGGACA 59.097 52.381 0.00 0.00 42.99 4.02
3 4 1.134965 CGACCCAAGTCATCTCTGGAC 60.135 57.143 0.00 0.00 43.73 4.02
4 5 1.186200 CGACCCAAGTCATCTCTGGA 58.814 55.000 0.00 0.00 43.73 3.86
5 6 0.176680 CCGACCCAAGTCATCTCTGG 59.823 60.000 0.00 0.00 43.73 3.86
6 7 0.898320 ACCGACCCAAGTCATCTCTG 59.102 55.000 0.00 0.00 43.73 3.35
7 8 1.550976 GAACCGACCCAAGTCATCTCT 59.449 52.381 0.00 0.00 43.73 3.10
8 9 1.736032 CGAACCGACCCAAGTCATCTC 60.736 57.143 0.00 0.00 43.73 2.75
9 10 0.246635 CGAACCGACCCAAGTCATCT 59.753 55.000 0.00 0.00 43.73 2.90
10 11 0.739813 CCGAACCGACCCAAGTCATC 60.740 60.000 0.00 0.00 43.73 2.92
11 12 1.295423 CCGAACCGACCCAAGTCAT 59.705 57.895 0.00 0.00 43.73 3.06
12 13 2.738480 CCGAACCGACCCAAGTCA 59.262 61.111 0.00 0.00 43.73 3.41
13 14 2.741211 GCCGAACCGACCCAAGTC 60.741 66.667 0.00 0.00 39.83 3.01
14 15 4.324991 GGCCGAACCGACCCAAGT 62.325 66.667 0.00 0.00 0.00 3.16
23 24 4.547367 CATCCTCCGGGCCGAACC 62.547 72.222 30.79 0.00 37.93 3.62
24 25 2.814913 AAACATCCTCCGGGCCGAAC 62.815 60.000 30.79 0.00 0.00 3.95
25 26 2.132089 AAAACATCCTCCGGGCCGAA 62.132 55.000 30.79 5.85 0.00 4.30
26 27 2.598787 AAAACATCCTCCGGGCCGA 61.599 57.895 30.79 12.88 0.00 5.54
27 28 2.045340 AAAACATCCTCCGGGCCG 60.045 61.111 21.46 21.46 0.00 6.13
28 29 2.710902 GCAAAACATCCTCCGGGCC 61.711 63.158 0.00 0.00 0.00 5.80
29 30 1.937546 CTGCAAAACATCCTCCGGGC 61.938 60.000 0.00 0.00 0.00 6.13
30 31 0.609131 ACTGCAAAACATCCTCCGGG 60.609 55.000 0.00 0.00 0.00 5.73
31 32 1.247567 AACTGCAAAACATCCTCCGG 58.752 50.000 0.00 0.00 0.00 5.14
32 33 3.074412 ACTAACTGCAAAACATCCTCCG 58.926 45.455 0.00 0.00 0.00 4.63
33 34 4.327680 AGACTAACTGCAAAACATCCTCC 58.672 43.478 0.00 0.00 0.00 4.30
34 35 5.948992 AAGACTAACTGCAAAACATCCTC 57.051 39.130 0.00 0.00 0.00 3.71
35 36 5.827797 TCAAAGACTAACTGCAAAACATCCT 59.172 36.000 0.00 0.00 0.00 3.24
36 37 6.072112 TCAAAGACTAACTGCAAAACATCC 57.928 37.500 0.00 0.00 0.00 3.51
37 38 7.362662 TCATCAAAGACTAACTGCAAAACATC 58.637 34.615 0.00 0.00 0.00 3.06
38 39 7.275888 TCATCAAAGACTAACTGCAAAACAT 57.724 32.000 0.00 0.00 0.00 2.71
39 40 6.691754 TCATCAAAGACTAACTGCAAAACA 57.308 33.333 0.00 0.00 0.00 2.83
40 41 7.649306 ACAATCATCAAAGACTAACTGCAAAAC 59.351 33.333 0.00 0.00 0.00 2.43
41 42 7.715657 ACAATCATCAAAGACTAACTGCAAAA 58.284 30.769 0.00 0.00 0.00 2.44
42 43 7.275888 ACAATCATCAAAGACTAACTGCAAA 57.724 32.000 0.00 0.00 0.00 3.68
43 44 6.882610 ACAATCATCAAAGACTAACTGCAA 57.117 33.333 0.00 0.00 0.00 4.08
44 45 7.977789 TTACAATCATCAAAGACTAACTGCA 57.022 32.000 0.00 0.00 0.00 4.41
45 46 8.721478 TCTTTACAATCATCAAAGACTAACTGC 58.279 33.333 0.00 0.00 34.28 4.40
53 54 7.719193 TCACCAAGTCTTTACAATCATCAAAGA 59.281 33.333 0.00 0.00 36.27 2.52
54 55 7.874940 TCACCAAGTCTTTACAATCATCAAAG 58.125 34.615 0.00 0.00 0.00 2.77
55 56 7.815840 TCACCAAGTCTTTACAATCATCAAA 57.184 32.000 0.00 0.00 0.00 2.69
56 57 7.815840 TTCACCAAGTCTTTACAATCATCAA 57.184 32.000 0.00 0.00 0.00 2.57
57 58 9.513906 TTATTCACCAAGTCTTTACAATCATCA 57.486 29.630 0.00 0.00 0.00 3.07
58 59 9.994432 CTTATTCACCAAGTCTTTACAATCATC 57.006 33.333 0.00 0.00 0.00 2.92
59 60 9.520515 ACTTATTCACCAAGTCTTTACAATCAT 57.479 29.630 0.00 0.00 30.36 2.45
60 61 8.918202 ACTTATTCACCAAGTCTTTACAATCA 57.082 30.769 0.00 0.00 30.36 2.57
67 68 8.932791 CGTGTATTACTTATTCACCAAGTCTTT 58.067 33.333 0.00 0.00 37.42 2.52
68 69 8.092687 ACGTGTATTACTTATTCACCAAGTCTT 58.907 33.333 0.00 0.00 37.42 3.01
69 70 7.609056 ACGTGTATTACTTATTCACCAAGTCT 58.391 34.615 0.00 0.00 37.42 3.24
70 71 7.823149 ACGTGTATTACTTATTCACCAAGTC 57.177 36.000 0.00 0.00 37.42 3.01
71 72 9.880157 AATACGTGTATTACTTATTCACCAAGT 57.120 29.630 0.00 0.00 39.50 3.16
108 109 4.964262 ACCATATCTGGACATGGCATTTTT 59.036 37.500 0.00 0.00 46.37 1.94
109 110 4.549668 ACCATATCTGGACATGGCATTTT 58.450 39.130 0.00 0.00 46.37 1.82
110 111 4.188937 ACCATATCTGGACATGGCATTT 57.811 40.909 0.00 0.00 46.37 2.32
111 112 3.889859 ACCATATCTGGACATGGCATT 57.110 42.857 0.00 0.00 46.37 3.56
112 113 3.117398 ACAACCATATCTGGACATGGCAT 60.117 43.478 0.00 0.00 46.37 4.40
113 114 2.241941 ACAACCATATCTGGACATGGCA 59.758 45.455 0.00 0.00 46.37 4.92
114 115 2.936202 ACAACCATATCTGGACATGGC 58.064 47.619 7.70 0.00 46.37 4.40
115 116 5.920193 AAAACAACCATATCTGGACATGG 57.080 39.130 3.76 6.37 46.37 3.66
140 141 3.015312 GCCGACCCACTAGTGACCC 62.015 68.421 24.68 10.75 0.00 4.46
172 173 1.519408 TTAACGCCTCTGTTGAAGCC 58.481 50.000 0.00 0.00 33.32 4.35
204 207 2.690778 CGGAAGCCGGCTGGAAAAG 61.691 63.158 33.60 14.70 44.15 2.27
292 295 3.303049 TGGAGATGCTCTAATCAGCTGA 58.697 45.455 20.79 20.79 40.39 4.26
306 309 0.321564 TTGGGCGTCTGTTGGAGATG 60.322 55.000 0.00 0.00 40.33 2.90
307 310 0.400213 TTTGGGCGTCTGTTGGAGAT 59.600 50.000 0.00 0.00 31.63 2.75
308 311 0.181587 TTTTGGGCGTCTGTTGGAGA 59.818 50.000 0.00 0.00 0.00 3.71
309 312 1.028905 TTTTTGGGCGTCTGTTGGAG 58.971 50.000 0.00 0.00 0.00 3.86
310 313 3.192799 TTTTTGGGCGTCTGTTGGA 57.807 47.368 0.00 0.00 0.00 3.53
332 335 4.795970 AATAAATTTCTAGCACGCGGAG 57.204 40.909 12.47 3.23 0.00 4.63
333 336 5.554822 AAAATAAATTTCTAGCACGCGGA 57.445 34.783 12.47 0.00 0.00 5.54
354 357 0.515564 GAGCTGTTCGGCGCTAAAAA 59.484 50.000 7.64 0.00 36.45 1.94
355 358 1.296056 GGAGCTGTTCGGCGCTAAAA 61.296 55.000 7.64 0.00 36.45 1.52
356 359 1.740296 GGAGCTGTTCGGCGCTAAA 60.740 57.895 7.64 0.00 36.45 1.85
357 360 2.125673 GGAGCTGTTCGGCGCTAA 60.126 61.111 7.64 0.00 36.45 3.09
358 361 2.938086 TTGGAGCTGTTCGGCGCTA 61.938 57.895 7.64 0.00 36.45 4.26
359 362 4.314440 TTGGAGCTGTTCGGCGCT 62.314 61.111 7.64 0.00 39.61 5.92
360 363 4.090057 GTTGGAGCTGTTCGGCGC 62.090 66.667 0.00 0.00 37.29 6.53
361 364 2.664851 TGTTGGAGCTGTTCGGCG 60.665 61.111 0.00 0.00 37.29 6.46
362 365 0.320421 TACTGTTGGAGCTGTTCGGC 60.320 55.000 0.00 0.00 0.00 5.54
363 366 2.163818 TTACTGTTGGAGCTGTTCGG 57.836 50.000 0.00 0.00 0.00 4.30
364 367 4.749245 ATTTTACTGTTGGAGCTGTTCG 57.251 40.909 0.00 0.00 0.00 3.95
365 368 6.528072 GCAATATTTTACTGTTGGAGCTGTTC 59.472 38.462 0.00 0.00 0.00 3.18
366 369 6.389906 GCAATATTTTACTGTTGGAGCTGTT 58.610 36.000 0.00 0.00 0.00 3.16
367 370 5.391950 CGCAATATTTTACTGTTGGAGCTGT 60.392 40.000 0.00 0.00 0.00 4.40
368 371 5.030295 CGCAATATTTTACTGTTGGAGCTG 58.970 41.667 0.00 0.00 0.00 4.24
369 372 4.438744 GCGCAATATTTTACTGTTGGAGCT 60.439 41.667 0.30 0.00 0.00 4.09
370 373 3.791353 GCGCAATATTTTACTGTTGGAGC 59.209 43.478 0.30 0.00 0.00 4.70
371 374 4.028383 CGCGCAATATTTTACTGTTGGAG 58.972 43.478 8.75 0.00 0.00 3.86
372 375 3.729462 GCGCGCAATATTTTACTGTTGGA 60.729 43.478 29.10 0.00 0.00 3.53
373 376 2.529894 GCGCGCAATATTTTACTGTTGG 59.470 45.455 29.10 0.00 0.00 3.77
374 377 2.210923 CGCGCGCAATATTTTACTGTTG 59.789 45.455 32.61 4.31 0.00 3.33
375 378 2.159626 ACGCGCGCAATATTTTACTGTT 60.160 40.909 32.58 0.01 0.00 3.16
376 379 1.395608 ACGCGCGCAATATTTTACTGT 59.604 42.857 32.58 13.07 0.00 3.55
377 380 2.085532 ACGCGCGCAATATTTTACTG 57.914 45.000 32.58 12.35 0.00 2.74
378 381 2.817538 AACGCGCGCAATATTTTACT 57.182 40.000 32.58 1.63 0.00 2.24
379 382 4.977414 TTTAACGCGCGCAATATTTTAC 57.023 36.364 32.58 0.00 0.00 2.01
380 383 5.568296 ACTTTTTAACGCGCGCAATATTTTA 59.432 32.000 32.58 16.18 0.00 1.52
381 384 4.383351 ACTTTTTAACGCGCGCAATATTTT 59.617 33.333 32.58 17.33 0.00 1.82
382 385 3.915569 ACTTTTTAACGCGCGCAATATTT 59.084 34.783 32.58 18.12 0.00 1.40
383 386 3.494232 ACTTTTTAACGCGCGCAATATT 58.506 36.364 32.58 18.92 0.00 1.28
384 387 3.125698 ACTTTTTAACGCGCGCAATAT 57.874 38.095 32.58 15.69 0.00 1.28
385 388 2.598000 ACTTTTTAACGCGCGCAATA 57.402 40.000 32.58 19.97 0.00 1.90
386 389 1.761206 AACTTTTTAACGCGCGCAAT 58.239 40.000 32.58 21.12 0.00 3.56
387 390 1.546834 AAACTTTTTAACGCGCGCAA 58.453 40.000 32.58 21.67 0.00 4.85
388 391 1.253034 CAAAACTTTTTAACGCGCGCA 59.747 42.857 32.58 16.18 0.00 6.09
389 392 1.394957 CCAAAACTTTTTAACGCGCGC 60.395 47.619 32.58 23.91 0.00 6.86
390 393 1.188355 CCCAAAACTTTTTAACGCGCG 59.812 47.619 30.96 30.96 0.00 6.86
391 394 1.071107 GCCCAAAACTTTTTAACGCGC 60.071 47.619 5.73 0.00 0.00 6.86
392 395 2.034423 GTGCCCAAAACTTTTTAACGCG 60.034 45.455 3.53 3.53 0.00 6.01
393 396 2.930682 TGTGCCCAAAACTTTTTAACGC 59.069 40.909 0.00 0.00 0.00 4.84
394 397 3.000575 CGTGTGCCCAAAACTTTTTAACG 60.001 43.478 0.00 0.00 0.00 3.18
395 398 3.307512 CCGTGTGCCCAAAACTTTTTAAC 59.692 43.478 0.00 0.00 0.00 2.01
396 399 3.056035 ACCGTGTGCCCAAAACTTTTTAA 60.056 39.130 0.00 0.00 0.00 1.52
397 400 2.496470 ACCGTGTGCCCAAAACTTTTTA 59.504 40.909 0.00 0.00 0.00 1.52
398 401 1.276705 ACCGTGTGCCCAAAACTTTTT 59.723 42.857 0.00 0.00 0.00 1.94
399 402 0.899019 ACCGTGTGCCCAAAACTTTT 59.101 45.000 0.00 0.00 0.00 2.27
400 403 0.174617 CACCGTGTGCCCAAAACTTT 59.825 50.000 0.00 0.00 0.00 2.66
401 404 0.681564 TCACCGTGTGCCCAAAACTT 60.682 50.000 0.00 0.00 32.98 2.66
402 405 0.681564 TTCACCGTGTGCCCAAAACT 60.682 50.000 0.00 0.00 32.98 2.66
403 406 0.173708 TTTCACCGTGTGCCCAAAAC 59.826 50.000 0.00 0.00 32.98 2.43
404 407 0.895530 TTTTCACCGTGTGCCCAAAA 59.104 45.000 0.00 0.00 32.98 2.44
405 408 0.895530 TTTTTCACCGTGTGCCCAAA 59.104 45.000 0.00 0.00 32.98 3.28
406 409 0.173708 GTTTTTCACCGTGTGCCCAA 59.826 50.000 0.00 0.00 32.98 4.12
407 410 1.810532 GTTTTTCACCGTGTGCCCA 59.189 52.632 0.00 0.00 32.98 5.36
408 411 1.298788 CGTTTTTCACCGTGTGCCC 60.299 57.895 0.00 0.00 32.98 5.36
409 412 1.942223 GCGTTTTTCACCGTGTGCC 60.942 57.895 0.00 0.00 32.98 5.01
410 413 0.305313 TAGCGTTTTTCACCGTGTGC 59.695 50.000 0.00 0.00 32.98 4.57
411 414 2.478894 AGATAGCGTTTTTCACCGTGTG 59.521 45.455 0.00 0.00 34.45 3.82
412 415 2.735134 GAGATAGCGTTTTTCACCGTGT 59.265 45.455 0.00 0.00 0.00 4.49
413 416 2.222508 CGAGATAGCGTTTTTCACCGTG 60.223 50.000 0.00 0.00 0.00 4.94
414 417 1.990563 CGAGATAGCGTTTTTCACCGT 59.009 47.619 0.00 0.00 0.00 4.83
415 418 1.266891 GCGAGATAGCGTTTTTCACCG 60.267 52.381 0.00 0.00 0.00 4.94
416 419 2.437308 GCGAGATAGCGTTTTTCACC 57.563 50.000 0.00 0.00 0.00 4.02
426 429 1.275471 TATGTTGCGCGCGAGATAGC 61.275 55.000 37.18 15.62 0.00 2.97
427 430 1.340658 ATATGTTGCGCGCGAGATAG 58.659 50.000 33.20 2.99 0.00 2.08
428 431 1.778334 AATATGTTGCGCGCGAGATA 58.222 45.000 32.63 32.63 0.00 1.98
429 432 0.937304 AAATATGTTGCGCGCGAGAT 59.063 45.000 37.18 30.73 0.00 2.75
430 433 0.724549 AAAATATGTTGCGCGCGAGA 59.275 45.000 37.18 24.70 0.00 4.04
431 434 0.833264 CAAAATATGTTGCGCGCGAG 59.167 50.000 37.18 8.39 0.00 5.03
432 435 0.522286 CCAAAATATGTTGCGCGCGA 60.522 50.000 37.18 23.83 0.00 5.87
433 436 1.470699 CCCAAAATATGTTGCGCGCG 61.471 55.000 28.44 28.44 0.00 6.86
434 437 1.751536 GCCCAAAATATGTTGCGCGC 61.752 55.000 27.26 27.26 0.00 6.86
435 438 0.179140 AGCCCAAAATATGTTGCGCG 60.179 50.000 9.16 0.00 37.37 6.86
436 439 2.008752 AAGCCCAAAATATGTTGCGC 57.991 45.000 7.11 7.11 33.39 6.09
437 440 2.672381 CCAAAGCCCAAAATATGTTGCG 59.328 45.455 0.00 0.00 31.99 4.85
438 441 3.936564 TCCAAAGCCCAAAATATGTTGC 58.063 40.909 0.00 0.00 0.00 4.17
439 442 6.255453 CGTAATCCAAAGCCCAAAATATGTTG 59.745 38.462 0.00 0.00 0.00 3.33
440 443 6.337356 CGTAATCCAAAGCCCAAAATATGTT 58.663 36.000 0.00 0.00 0.00 2.71
441 444 5.681179 GCGTAATCCAAAGCCCAAAATATGT 60.681 40.000 0.00 0.00 0.00 2.29
442 445 4.744631 GCGTAATCCAAAGCCCAAAATATG 59.255 41.667 0.00 0.00 0.00 1.78
443 446 4.499019 CGCGTAATCCAAAGCCCAAAATAT 60.499 41.667 0.00 0.00 0.00 1.28
444 447 3.181495 CGCGTAATCCAAAGCCCAAAATA 60.181 43.478 0.00 0.00 0.00 1.40
445 448 2.416701 CGCGTAATCCAAAGCCCAAAAT 60.417 45.455 0.00 0.00 0.00 1.82
446 449 1.068194 CGCGTAATCCAAAGCCCAAAA 60.068 47.619 0.00 0.00 0.00 2.44
447 450 0.523966 CGCGTAATCCAAAGCCCAAA 59.476 50.000 0.00 0.00 0.00 3.28
448 451 1.928706 GCGCGTAATCCAAAGCCCAA 61.929 55.000 8.43 0.00 0.00 4.12
449 452 2.403378 GCGCGTAATCCAAAGCCCA 61.403 57.895 8.43 0.00 0.00 5.36
450 453 2.403378 TGCGCGTAATCCAAAGCCC 61.403 57.895 8.43 0.00 0.00 5.19
451 454 1.226295 GTGCGCGTAATCCAAAGCC 60.226 57.895 8.43 0.00 0.00 4.35
452 455 0.168128 AAGTGCGCGTAATCCAAAGC 59.832 50.000 8.43 0.00 0.00 3.51
453 456 1.463056 TGAAGTGCGCGTAATCCAAAG 59.537 47.619 8.43 0.00 0.00 2.77
454 457 1.514003 TGAAGTGCGCGTAATCCAAA 58.486 45.000 8.43 0.00 0.00 3.28
455 458 1.732941 ATGAAGTGCGCGTAATCCAA 58.267 45.000 8.43 0.00 0.00 3.53
456 459 2.588027 TATGAAGTGCGCGTAATCCA 57.412 45.000 8.43 0.00 0.00 3.41
457 460 4.468095 AATTATGAAGTGCGCGTAATCC 57.532 40.909 8.43 0.00 29.63 3.01
458 461 4.144731 GCAAATTATGAAGTGCGCGTAATC 59.855 41.667 8.43 6.12 29.63 1.75
459 462 4.035017 GCAAATTATGAAGTGCGCGTAAT 58.965 39.130 8.43 0.00 0.00 1.89
460 463 3.120165 TGCAAATTATGAAGTGCGCGTAA 60.120 39.130 8.43 0.00 39.92 3.18
461 464 2.416893 TGCAAATTATGAAGTGCGCGTA 59.583 40.909 8.43 0.00 39.92 4.42
462 465 1.198867 TGCAAATTATGAAGTGCGCGT 59.801 42.857 8.43 0.00 39.92 6.01
463 466 1.578915 GTGCAAATTATGAAGTGCGCG 59.421 47.619 0.00 0.00 39.92 6.86
464 467 2.595536 CAGTGCAAATTATGAAGTGCGC 59.404 45.455 0.00 0.00 45.56 6.09
467 470 3.825308 ACGCAGTGCAAATTATGAAGTG 58.175 40.909 16.83 0.00 42.51 3.16
492 495 4.087366 CGCTTAAAAATGCGCGTCTAAAAA 59.913 37.500 8.43 0.00 45.50 1.94
493 496 3.600362 CGCTTAAAAATGCGCGTCTAAAA 59.400 39.130 8.43 0.00 45.50 1.52
494 497 3.157510 CGCTTAAAAATGCGCGTCTAAA 58.842 40.909 8.43 0.00 45.50 1.85
495 498 2.764768 CGCTTAAAAATGCGCGTCTAA 58.235 42.857 8.43 0.62 45.50 2.10
496 499 2.429213 CGCTTAAAAATGCGCGTCTA 57.571 45.000 8.43 0.00 45.50 2.59
497 500 3.290098 CGCTTAAAAATGCGCGTCT 57.710 47.368 8.43 0.00 45.50 4.18
503 506 4.144561 GCTTTTGCAAACGCTTAAAAATGC 59.855 37.500 27.80 7.76 46.58 3.56
504 507 5.772032 GCTTTTGCAAACGCTTAAAAATG 57.228 34.783 27.80 1.88 46.58 2.32
520 523 1.339610 TCGGGACCAACATTGCTTTTG 59.660 47.619 0.00 0.00 0.00 2.44
521 524 1.339929 GTCGGGACCAACATTGCTTTT 59.660 47.619 0.00 0.00 0.00 2.27
522 525 0.958822 GTCGGGACCAACATTGCTTT 59.041 50.000 0.00 0.00 0.00 3.51
523 526 1.234615 CGTCGGGACCAACATTGCTT 61.235 55.000 0.00 0.00 0.00 3.91
524 527 1.671054 CGTCGGGACCAACATTGCT 60.671 57.895 0.00 0.00 0.00 3.91
525 528 2.867472 CGTCGGGACCAACATTGC 59.133 61.111 0.00 0.00 0.00 3.56
526 529 1.511318 TTGCGTCGGGACCAACATTG 61.511 55.000 0.00 0.00 0.00 2.82
527 530 0.608035 ATTGCGTCGGGACCAACATT 60.608 50.000 0.00 0.00 0.00 2.71
528 531 0.250793 TATTGCGTCGGGACCAACAT 59.749 50.000 0.00 0.00 0.00 2.71
529 532 0.035036 TTATTGCGTCGGGACCAACA 59.965 50.000 0.00 0.00 0.00 3.33
530 533 1.158434 TTTATTGCGTCGGGACCAAC 58.842 50.000 0.00 0.00 0.00 3.77
531 534 1.893544 TTTTATTGCGTCGGGACCAA 58.106 45.000 0.00 5.58 0.00 3.67
532 535 1.893544 TTTTTATTGCGTCGGGACCA 58.106 45.000 0.00 0.00 0.00 4.02
533 536 2.792749 CATTTTTATTGCGTCGGGACC 58.207 47.619 0.00 0.00 0.00 4.46
534 537 2.159435 AGCATTTTTATTGCGTCGGGAC 60.159 45.455 0.00 0.00 44.82 4.46
535 538 2.088423 AGCATTTTTATTGCGTCGGGA 58.912 42.857 0.00 0.00 44.82 5.14
536 539 2.559998 AGCATTTTTATTGCGTCGGG 57.440 45.000 0.00 0.00 44.82 5.14
537 540 7.075121 TCATTATAGCATTTTTATTGCGTCGG 58.925 34.615 0.00 0.00 44.82 4.79
538 541 8.569683 CATCATTATAGCATTTTTATTGCGTCG 58.430 33.333 0.00 0.00 44.82 5.12
539 542 8.368126 GCATCATTATAGCATTTTTATTGCGTC 58.632 33.333 0.00 0.00 44.82 5.19
540 543 7.060979 CGCATCATTATAGCATTTTTATTGCGT 59.939 33.333 0.00 0.00 44.82 5.24
541 544 7.378047 CGCATCATTATAGCATTTTTATTGCG 58.622 34.615 0.00 0.00 44.82 4.85
542 545 7.062605 AGCGCATCATTATAGCATTTTTATTGC 59.937 33.333 11.47 0.00 40.45 3.56
543 546 8.456904 AGCGCATCATTATAGCATTTTTATTG 57.543 30.769 11.47 0.00 0.00 1.90
558 561 8.702438 GCACAATAAAAATTATAGCGCATCATT 58.298 29.630 11.47 1.88 0.00 2.57
559 562 7.060979 CGCACAATAAAAATTATAGCGCATCAT 59.939 33.333 11.47 1.78 36.16 2.45
560 563 6.359352 CGCACAATAAAAATTATAGCGCATCA 59.641 34.615 11.47 0.00 36.16 3.07
561 564 6.731840 CGCACAATAAAAATTATAGCGCATC 58.268 36.000 11.47 0.00 36.16 3.91
562 565 6.674005 CGCACAATAAAAATTATAGCGCAT 57.326 33.333 11.47 3.63 36.16 4.73
565 568 7.830217 TTAGCGCACAATAAAAATTATAGCG 57.170 32.000 11.47 14.59 44.77 4.26
573 576 9.535270 GCATAAAAATTTAGCGCACAATAAAAA 57.465 25.926 11.47 0.00 0.00 1.94
574 577 7.895259 CGCATAAAAATTTAGCGCACAATAAAA 59.105 29.630 11.47 0.18 41.95 1.52
575 578 7.387180 CGCATAAAAATTTAGCGCACAATAAA 58.613 30.769 11.47 6.06 41.95 1.40
576 579 6.020281 CCGCATAAAAATTTAGCGCACAATAA 60.020 34.615 11.47 0.00 46.33 1.40
577 580 5.457148 CCGCATAAAAATTTAGCGCACAATA 59.543 36.000 11.47 0.00 46.33 1.90
578 581 4.267452 CCGCATAAAAATTTAGCGCACAAT 59.733 37.500 11.47 3.88 46.33 2.71
579 582 3.610242 CCGCATAAAAATTTAGCGCACAA 59.390 39.130 11.47 0.95 46.33 3.33
580 583 3.175152 CCGCATAAAAATTTAGCGCACA 58.825 40.909 11.47 0.00 46.33 4.57
581 584 2.034926 GCCGCATAAAAATTTAGCGCAC 60.035 45.455 11.47 10.20 46.33 5.34
582 585 2.159310 AGCCGCATAAAAATTTAGCGCA 60.159 40.909 11.47 0.00 46.33 6.09
583 586 2.216263 CAGCCGCATAAAAATTTAGCGC 59.784 45.455 16.72 0.00 46.33 5.92
585 588 4.032786 CCAACAGCCGCATAAAAATTTAGC 59.967 41.667 0.00 0.00 0.00 3.09
586 589 5.406649 TCCAACAGCCGCATAAAAATTTAG 58.593 37.500 0.00 0.00 0.00 1.85
587 590 5.184096 TCTCCAACAGCCGCATAAAAATTTA 59.816 36.000 0.00 0.00 0.00 1.40
588 591 4.021544 TCTCCAACAGCCGCATAAAAATTT 60.022 37.500 0.00 0.00 0.00 1.82
589 592 3.509575 TCTCCAACAGCCGCATAAAAATT 59.490 39.130 0.00 0.00 0.00 1.82
590 593 3.088532 TCTCCAACAGCCGCATAAAAAT 58.911 40.909 0.00 0.00 0.00 1.82
591 594 2.509569 TCTCCAACAGCCGCATAAAAA 58.490 42.857 0.00 0.00 0.00 1.94
592 595 2.192664 TCTCCAACAGCCGCATAAAA 57.807 45.000 0.00 0.00 0.00 1.52
593 596 2.016318 CATCTCCAACAGCCGCATAAA 58.984 47.619 0.00 0.00 0.00 1.40
594 597 1.667236 CATCTCCAACAGCCGCATAA 58.333 50.000 0.00 0.00 0.00 1.90
595 598 0.815213 GCATCTCCAACAGCCGCATA 60.815 55.000 0.00 0.00 0.00 3.14
596 599 2.117156 GCATCTCCAACAGCCGCAT 61.117 57.895 0.00 0.00 0.00 4.73
597 600 2.747460 GCATCTCCAACAGCCGCA 60.747 61.111 0.00 0.00 0.00 5.69
598 601 2.437359 AGCATCTCCAACAGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
599 602 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
610 613 4.063689 CCTGACATATGGACAAGAGCATC 58.936 47.826 7.80 0.00 0.00 3.91
611 614 3.457380 ACCTGACATATGGACAAGAGCAT 59.543 43.478 7.80 0.00 0.00 3.79
612 615 2.840038 ACCTGACATATGGACAAGAGCA 59.160 45.455 7.80 0.00 0.00 4.26
613 616 3.118629 TCACCTGACATATGGACAAGAGC 60.119 47.826 7.80 0.00 0.00 4.09
614 617 4.403752 TCTCACCTGACATATGGACAAGAG 59.596 45.833 7.80 12.62 0.00 2.85
615 618 4.352893 TCTCACCTGACATATGGACAAGA 58.647 43.478 7.80 4.39 0.00 3.02
616 619 4.743057 TCTCACCTGACATATGGACAAG 57.257 45.455 7.80 3.78 0.00 3.16
617 620 4.684214 GCATCTCACCTGACATATGGACAA 60.684 45.833 7.80 0.00 0.00 3.18
618 621 3.181462 GCATCTCACCTGACATATGGACA 60.181 47.826 7.80 6.21 0.00 4.02
619 622 3.397482 GCATCTCACCTGACATATGGAC 58.603 50.000 7.80 1.54 0.00 4.02
625 628 0.835941 GGAGGCATCTCACCTGACAT 59.164 55.000 0.00 0.00 41.69 3.06
663 666 5.450818 AGTCCTACTCATATTTTTGCCCA 57.549 39.130 0.00 0.00 0.00 5.36
860 864 0.255890 ACCACTTGACACTGGTTGCT 59.744 50.000 0.00 0.00 37.51 3.91
948 952 6.294361 TGCTCTATAAACAAAGACCAGCTA 57.706 37.500 0.00 0.00 0.00 3.32
1098 1106 9.670442 TCATGGAAGTAGGTATAAAATACTCCT 57.330 33.333 0.00 0.00 0.00 3.69
1210 1233 6.995686 CAGACCTAGCTACATCTTCTCTCTTA 59.004 42.308 0.00 0.00 0.00 2.10
1233 1256 7.331687 ACACAAAGGAAAACAAAAACTCATCAG 59.668 33.333 0.00 0.00 0.00 2.90
1452 1476 4.778415 CTCGACGACGCACCCCAG 62.778 72.222 1.48 0.00 39.58 4.45
1528 1552 1.081094 CATGATGCACACGAGCTTGA 58.919 50.000 8.31 0.00 34.99 3.02
1673 1697 6.902771 ATTACTCTACTTACGATGATGGCT 57.097 37.500 0.00 0.00 0.00 4.75
1735 1759 2.661866 AGCGTGCCGTCAGTCAAC 60.662 61.111 0.00 0.00 0.00 3.18
1894 1918 2.312424 ATTTTGTAGGCCGGGGAAAA 57.688 45.000 2.18 2.21 0.00 2.29
1936 1960 3.299977 CCTGCCTGCTTGCTTGCA 61.300 61.111 8.70 8.70 41.05 4.08
2197 2614 6.096282 GCTTTTGGTGCCCAAGATAAATAGTA 59.904 38.462 6.73 0.00 44.84 1.82
2198 2615 5.105351 GCTTTTGGTGCCCAAGATAAATAGT 60.105 40.000 6.73 0.00 44.84 2.12
2199 2616 5.105392 TGCTTTTGGTGCCCAAGATAAATAG 60.105 40.000 6.73 0.00 44.84 1.73
2262 2681 6.705302 TCGTGTGGGGATATACTACTACTAG 58.295 44.000 0.00 0.00 0.00 2.57
2265 2684 5.942236 TCATCGTGTGGGGATATACTACTAC 59.058 44.000 0.00 0.00 0.00 2.73
2301 2720 7.908193 AACAACAAAAGTTTATAGCTTCACG 57.092 32.000 0.00 0.00 0.00 4.35
2329 2748 7.828717 TGAAATGCTGATTGATTTACACTCCTA 59.171 33.333 0.00 0.00 0.00 2.94
2336 2755 6.327934 AGTGCTGAAATGCTGATTGATTTAC 58.672 36.000 0.00 0.00 0.00 2.01
2390 2809 2.344142 CACGTTTTGGTCAGTGCAAAAC 59.656 45.455 20.45 20.45 42.21 2.43
2805 3224 5.017490 ACCGCAGCTATATAGTTAGGTCAT 58.983 41.667 15.52 0.66 0.00 3.06
2821 3240 3.730715 GCAATTGATAAACATACCGCAGC 59.269 43.478 10.34 0.00 0.00 5.25
2826 3245 3.638484 GCCCGCAATTGATAAACATACC 58.362 45.455 10.34 0.00 0.00 2.73
2976 3399 2.559668 CACACCTTCCTTCCTACGTACA 59.440 50.000 0.00 0.00 0.00 2.90
2984 3407 1.002011 GAGCCCACACCTTCCTTCC 60.002 63.158 0.00 0.00 0.00 3.46
2985 3408 1.376037 CGAGCCCACACCTTCCTTC 60.376 63.158 0.00 0.00 0.00 3.46
3152 3680 3.794564 GCAACTTAAGAAAAACACCACGG 59.205 43.478 10.09 0.00 0.00 4.94
3188 3716 5.581085 GGTAGTGTACTAGGCAAAACTGATG 59.419 44.000 0.00 0.00 0.00 3.07
3189 3717 5.247564 TGGTAGTGTACTAGGCAAAACTGAT 59.752 40.000 0.00 0.00 0.00 2.90
3190 3718 4.589798 TGGTAGTGTACTAGGCAAAACTGA 59.410 41.667 0.00 0.00 0.00 3.41
3191 3719 4.689345 GTGGTAGTGTACTAGGCAAAACTG 59.311 45.833 0.00 0.00 0.00 3.16
3192 3720 4.591924 AGTGGTAGTGTACTAGGCAAAACT 59.408 41.667 0.00 0.00 0.00 2.66
3193 3721 4.891260 AGTGGTAGTGTACTAGGCAAAAC 58.109 43.478 0.00 0.00 0.00 2.43
3194 3722 6.669125 TTAGTGGTAGTGTACTAGGCAAAA 57.331 37.500 0.00 0.00 31.62 2.44
3195 3723 6.862469 ATTAGTGGTAGTGTACTAGGCAAA 57.138 37.500 0.00 0.00 31.62 3.68
3196 3724 7.348815 TCTATTAGTGGTAGTGTACTAGGCAA 58.651 38.462 0.00 0.00 31.62 4.52
3197 3725 6.903516 TCTATTAGTGGTAGTGTACTAGGCA 58.096 40.000 0.00 0.00 31.62 4.75
3198 3726 7.814264 TTCTATTAGTGGTAGTGTACTAGGC 57.186 40.000 0.00 0.00 31.62 3.93
3202 3730 9.886132 CCATTTTTCTATTAGTGGTAGTGTACT 57.114 33.333 0.00 0.00 0.00 2.73
3203 3731 9.662947 ACCATTTTTCTATTAGTGGTAGTGTAC 57.337 33.333 2.03 0.00 38.13 2.90
3251 3779 0.878416 CCGGCTCAAATTCAAACCGA 59.122 50.000 10.47 0.00 43.19 4.69
3276 3804 0.672401 AACCGGCACTAATGGACACG 60.672 55.000 0.00 0.00 0.00 4.49
3314 3843 5.649831 ACTACGAACCGGTACTAAAGATCTT 59.350 40.000 8.00 0.88 0.00 2.40
3343 3872 1.069823 TGGCACGAACCGGTACTAAAA 59.930 47.619 8.00 0.00 0.00 1.52
3365 3894 1.002087 CTGCCTCTTCAGTACCGGTTT 59.998 52.381 15.04 0.00 0.00 3.27
3376 3905 2.749441 GCCAGCCACTGCCTCTTC 60.749 66.667 0.00 0.00 38.69 2.87
3538 4067 5.755409 TTAGGACCAAGTGCTTCTGATTA 57.245 39.130 0.00 0.00 35.47 1.75
3539 4068 4.640771 TTAGGACCAAGTGCTTCTGATT 57.359 40.909 0.00 0.00 35.47 2.57
3544 4073 4.762251 AGTTCAATTAGGACCAAGTGCTTC 59.238 41.667 0.00 0.00 35.47 3.86
3713 4242 4.585879 AGTGAGGGCGTAAACATGTAAAT 58.414 39.130 0.00 0.00 0.00 1.40
3740 4269 2.107378 AGTGAGTGTGAGTGGAGAGAGA 59.893 50.000 0.00 0.00 0.00 3.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.