Multiple sequence alignment - TraesCS4A01G121400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G121400 chr4A 100.000 4208 0 0 992 5199 150227302 150231509 0.000000e+00 7771.0
1 TraesCS4A01G121400 chr4A 100.000 610 0 0 1 610 150226311 150226920 0.000000e+00 1127.0
2 TraesCS4A01G121400 chr4A 85.911 291 32 4 6 296 673474316 673474597 8.460000e-78 302.0
3 TraesCS4A01G121400 chr4A 83.618 293 41 3 6 298 676909085 676908800 8.580000e-68 268.0
4 TraesCS4A01G121400 chr4B 92.557 3480 154 48 992 4410 398556848 398560283 0.000000e+00 4894.0
5 TraesCS4A01G121400 chr4B 93.471 628 14 5 4586 5199 398562866 398563480 0.000000e+00 907.0
6 TraesCS4A01G121400 chr4B 96.026 302 8 3 312 610 398556244 398556544 6.050000e-134 488.0
7 TraesCS4A01G121400 chr4D 92.524 1565 63 28 2741 4293 322674857 322673335 0.000000e+00 2193.0
8 TraesCS4A01G121400 chr4D 93.038 948 32 17 992 1931 322676834 322675913 0.000000e+00 1354.0
9 TraesCS4A01G121400 chr4D 90.633 822 61 7 1936 2744 322675755 322674937 0.000000e+00 1077.0
10 TraesCS4A01G121400 chr4D 88.372 559 41 12 4656 5199 322672204 322671655 0.000000e+00 651.0
11 TraesCS4A01G121400 chr4D 90.820 305 9 12 315 610 322677161 322676867 1.760000e-104 390.0
12 TraesCS4A01G121400 chr1B 85.342 307 32 4 1 296 373314392 373314696 6.540000e-79 305.0
13 TraesCS4A01G121400 chr5B 85.324 293 35 3 6 298 404146839 404146555 3.940000e-76 296.0
14 TraesCS4A01G121400 chr5B 89.344 122 12 1 2534 2654 566682041 566682162 9.020000e-33 152.0
15 TraesCS4A01G121400 chr5B 86.458 96 11 2 2562 2656 6835907 6836001 2.560000e-18 104.0
16 TraesCS4A01G121400 chr5B 85.417 96 12 2 2562 2656 24628796 24628890 1.190000e-16 99.0
17 TraesCS4A01G121400 chr2D 84.642 293 35 5 6 298 568257557 568257275 3.060000e-72 283.0
18 TraesCS4A01G121400 chr2D 87.234 94 11 1 2524 2617 146303559 146303651 7.120000e-19 106.0
19 TraesCS4A01G121400 chr2D 90.000 60 6 0 2615 2674 459489122 459489063 1.550000e-10 78.7
20 TraesCS4A01G121400 chr6D 84.889 225 33 1 9 233 255093654 255093431 5.240000e-55 226.0
21 TraesCS4A01G121400 chr7D 91.964 112 9 0 2490 2601 408029692 408029803 1.940000e-34 158.0
22 TraesCS4A01G121400 chr5A 86.777 121 16 0 2534 2654 580942295 580942415 9.080000e-28 135.0
23 TraesCS4A01G121400 chr3B 87.719 114 14 0 2477 2590 753727552 753727665 3.270000e-27 134.0
24 TraesCS4A01G121400 chr3A 85.088 114 17 0 2477 2590 699842425 699842538 3.290000e-22 117.0
25 TraesCS4A01G121400 chr6B 82.500 120 21 0 2554 2673 132347676 132347795 7.120000e-19 106.0
26 TraesCS4A01G121400 chr2B 87.368 95 9 3 2524 2617 206371276 206371368 7.120000e-19 106.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G121400 chr4A 150226311 150231509 5198 False 4449.000000 7771 100.0000 1 5199 2 chr4A.!!$F2 5198
1 TraesCS4A01G121400 chr4B 398556244 398563480 7236 False 2096.333333 4894 94.0180 312 5199 3 chr4B.!!$F1 4887
2 TraesCS4A01G121400 chr4D 322671655 322677161 5506 True 1133.000000 2193 91.0774 315 5199 5 chr4D.!!$R1 4884

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
189 190 0.028902 GCTTGCTCGACGGTGTTTTT 59.971 50.0 0.00 0.00 0.00 1.94 F
262 263 0.103026 TTGCATCGAGTGATAGCGCT 59.897 50.0 17.26 17.26 37.63 5.92 F
1583 1602 0.105504 AATTTGCTATCCTGGGGCCC 60.106 55.0 18.17 18.17 0.00 5.80 F
2117 2314 0.407139 ATGATAAGCCCTGCCATCCC 59.593 55.0 0.00 0.00 0.00 3.85 F
2268 2486 0.468958 TTGGCCCAAAACTGCTGCTA 60.469 50.0 0.00 0.00 0.00 3.49 F
3676 3996 0.839946 AGGTGTCAACACTTCTGGCT 59.160 50.0 12.65 0.00 45.73 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1826 1848 0.034863 GCTCGGGGTGGTAATTGGAA 60.035 55.0 0.00 0.00 0.00 3.53 R
1829 1851 0.035439 AGTGCTCGGGGTGGTAATTG 60.035 55.0 0.00 0.00 0.00 2.32 R
3343 3660 0.606401 AGTCCAGTGAACCCAATGCG 60.606 55.0 0.00 0.00 37.08 4.73 R
3746 4069 0.033503 TACATCGGACTGAGCTCCCA 60.034 55.0 12.15 0.00 0.00 4.37 R
3747 4070 1.112113 TTACATCGGACTGAGCTCCC 58.888 55.0 12.15 4.18 0.00 4.30 R
4565 5635 0.388649 GACTCGTCAGGCAACGTGAT 60.389 55.0 17.36 5.76 43.08 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.351657 TCAGAGCGGACCGAGTCT 59.648 61.111 20.50 15.59 32.47 3.24
18 19 1.303398 TCAGAGCGGACCGAGTCTT 60.303 57.895 20.50 0.85 32.47 3.01
19 20 1.153939 CAGAGCGGACCGAGTCTTG 60.154 63.158 20.50 9.36 32.47 3.02
20 21 2.507324 GAGCGGACCGAGTCTTGC 60.507 66.667 20.50 0.00 35.41 4.01
21 22 3.991536 GAGCGGACCGAGTCTTGCC 62.992 68.421 20.50 0.00 35.64 4.52
22 23 4.373116 GCGGACCGAGTCTTGCCA 62.373 66.667 20.50 0.00 31.52 4.92
23 24 2.579201 CGGACCGAGTCTTGCCAT 59.421 61.111 8.64 0.00 32.47 4.40
24 25 1.079127 CGGACCGAGTCTTGCCATT 60.079 57.895 8.64 0.00 32.47 3.16
25 26 1.084370 CGGACCGAGTCTTGCCATTC 61.084 60.000 8.64 0.00 32.47 2.67
26 27 0.036388 GGACCGAGTCTTGCCATTCA 60.036 55.000 4.41 0.00 32.47 2.57
27 28 1.407437 GGACCGAGTCTTGCCATTCAT 60.407 52.381 4.41 0.00 32.47 2.57
28 29 1.936547 GACCGAGTCTTGCCATTCATC 59.063 52.381 0.00 0.00 0.00 2.92
29 30 1.556911 ACCGAGTCTTGCCATTCATCT 59.443 47.619 0.00 0.00 0.00 2.90
30 31 1.938577 CCGAGTCTTGCCATTCATCTG 59.061 52.381 0.00 0.00 0.00 2.90
31 32 2.625737 CGAGTCTTGCCATTCATCTGT 58.374 47.619 0.00 0.00 0.00 3.41
32 33 2.606725 CGAGTCTTGCCATTCATCTGTC 59.393 50.000 0.00 0.00 0.00 3.51
33 34 3.603532 GAGTCTTGCCATTCATCTGTCA 58.396 45.455 0.00 0.00 0.00 3.58
34 35 3.341823 AGTCTTGCCATTCATCTGTCAC 58.658 45.455 0.00 0.00 0.00 3.67
35 36 3.008813 AGTCTTGCCATTCATCTGTCACT 59.991 43.478 0.00 0.00 0.00 3.41
36 37 3.755378 GTCTTGCCATTCATCTGTCACTT 59.245 43.478 0.00 0.00 0.00 3.16
37 38 4.005650 TCTTGCCATTCATCTGTCACTTC 58.994 43.478 0.00 0.00 0.00 3.01
38 39 2.715046 TGCCATTCATCTGTCACTTCC 58.285 47.619 0.00 0.00 0.00 3.46
39 40 2.306805 TGCCATTCATCTGTCACTTCCT 59.693 45.455 0.00 0.00 0.00 3.36
40 41 3.245016 TGCCATTCATCTGTCACTTCCTT 60.245 43.478 0.00 0.00 0.00 3.36
41 42 3.760684 GCCATTCATCTGTCACTTCCTTT 59.239 43.478 0.00 0.00 0.00 3.11
42 43 4.943705 GCCATTCATCTGTCACTTCCTTTA 59.056 41.667 0.00 0.00 0.00 1.85
43 44 5.415701 GCCATTCATCTGTCACTTCCTTTAA 59.584 40.000 0.00 0.00 0.00 1.52
44 45 6.404074 GCCATTCATCTGTCACTTCCTTTAAG 60.404 42.308 0.00 0.00 41.33 1.85
45 46 6.094603 CCATTCATCTGTCACTTCCTTTAAGG 59.905 42.308 4.29 4.29 39.73 2.69
46 47 4.579869 TCATCTGTCACTTCCTTTAAGGC 58.420 43.478 6.05 0.00 39.73 4.35
47 48 3.040147 TCTGTCACTTCCTTTAAGGCG 57.960 47.619 6.05 2.47 39.73 5.52
48 49 2.367567 TCTGTCACTTCCTTTAAGGCGT 59.632 45.455 6.05 3.12 39.73 5.68
49 50 3.139077 CTGTCACTTCCTTTAAGGCGTT 58.861 45.455 6.05 0.00 39.73 4.84
50 51 4.039488 TCTGTCACTTCCTTTAAGGCGTTA 59.961 41.667 6.05 0.00 39.73 3.18
51 52 4.706035 TGTCACTTCCTTTAAGGCGTTAA 58.294 39.130 6.05 7.49 39.73 2.01
52 53 4.753107 TGTCACTTCCTTTAAGGCGTTAAG 59.247 41.667 6.05 7.32 39.73 1.85
53 54 4.153655 GTCACTTCCTTTAAGGCGTTAAGG 59.846 45.833 11.29 11.29 39.73 2.69
54 55 4.040706 TCACTTCCTTTAAGGCGTTAAGGA 59.959 41.667 19.11 15.34 39.73 3.36
55 56 4.941873 CACTTCCTTTAAGGCGTTAAGGAT 59.058 41.667 18.98 5.35 39.73 3.24
56 57 4.941873 ACTTCCTTTAAGGCGTTAAGGATG 59.058 41.667 22.80 22.80 39.73 3.51
57 58 3.881220 TCCTTTAAGGCGTTAAGGATGG 58.119 45.455 19.11 15.13 34.61 3.51
58 59 3.520317 TCCTTTAAGGCGTTAAGGATGGA 59.480 43.478 19.11 16.65 34.61 3.41
59 60 4.165372 TCCTTTAAGGCGTTAAGGATGGAT 59.835 41.667 19.11 0.00 34.61 3.41
60 61 4.275936 CCTTTAAGGCGTTAAGGATGGATG 59.724 45.833 19.11 1.72 28.76 3.51
61 62 2.348411 AAGGCGTTAAGGATGGATGG 57.652 50.000 0.00 0.00 0.00 3.51
62 63 1.213296 AGGCGTTAAGGATGGATGGT 58.787 50.000 0.00 0.00 0.00 3.55
63 64 1.134098 AGGCGTTAAGGATGGATGGTG 60.134 52.381 0.00 0.00 0.00 4.17
64 65 0.663153 GCGTTAAGGATGGATGGTGC 59.337 55.000 0.00 0.00 0.00 5.01
65 66 0.937304 CGTTAAGGATGGATGGTGCG 59.063 55.000 0.00 0.00 0.00 5.34
66 67 1.742411 CGTTAAGGATGGATGGTGCGT 60.742 52.381 0.00 0.00 0.00 5.24
67 68 2.365582 GTTAAGGATGGATGGTGCGTT 58.634 47.619 0.00 0.00 0.00 4.84
68 69 2.036958 TAAGGATGGATGGTGCGTTG 57.963 50.000 0.00 0.00 0.00 4.10
69 70 0.327924 AAGGATGGATGGTGCGTTGA 59.672 50.000 0.00 0.00 0.00 3.18
70 71 0.392998 AGGATGGATGGTGCGTTGAC 60.393 55.000 0.00 0.00 0.00 3.18
71 72 0.676466 GGATGGATGGTGCGTTGACA 60.676 55.000 0.00 0.00 0.00 3.58
72 73 1.164411 GATGGATGGTGCGTTGACAA 58.836 50.000 0.00 0.00 0.00 3.18
73 74 1.131126 GATGGATGGTGCGTTGACAAG 59.869 52.381 0.00 0.00 0.00 3.16
74 75 0.107643 TGGATGGTGCGTTGACAAGA 59.892 50.000 0.00 0.00 0.00 3.02
75 76 0.798776 GGATGGTGCGTTGACAAGAG 59.201 55.000 0.00 0.00 0.00 2.85
76 77 1.608025 GGATGGTGCGTTGACAAGAGA 60.608 52.381 0.00 0.00 0.00 3.10
77 78 2.143122 GATGGTGCGTTGACAAGAGAA 58.857 47.619 0.00 0.00 0.00 2.87
78 79 2.254546 TGGTGCGTTGACAAGAGAAT 57.745 45.000 0.00 0.00 0.00 2.40
79 80 2.143122 TGGTGCGTTGACAAGAGAATC 58.857 47.619 0.00 0.00 0.00 2.52
94 95 4.489679 GAGAATCTTTGCGGAAGTTGTT 57.510 40.909 0.00 0.00 36.70 2.83
95 96 4.222114 GAGAATCTTTGCGGAAGTTGTTG 58.778 43.478 0.00 0.00 36.70 3.33
96 97 3.004734 AGAATCTTTGCGGAAGTTGTTGG 59.995 43.478 0.00 0.00 36.70 3.77
97 98 1.757682 TCTTTGCGGAAGTTGTTGGT 58.242 45.000 0.00 0.00 36.70 3.67
98 99 1.673920 TCTTTGCGGAAGTTGTTGGTC 59.326 47.619 0.00 0.00 36.70 4.02
99 100 1.676006 CTTTGCGGAAGTTGTTGGTCT 59.324 47.619 0.00 0.00 0.00 3.85
100 101 1.757682 TTGCGGAAGTTGTTGGTCTT 58.242 45.000 0.00 0.00 0.00 3.01
101 102 1.305201 TGCGGAAGTTGTTGGTCTTC 58.695 50.000 0.00 0.00 39.21 2.87
102 103 0.234884 GCGGAAGTTGTTGGTCTTCG 59.765 55.000 0.00 0.00 40.36 3.79
103 104 1.860676 CGGAAGTTGTTGGTCTTCGA 58.139 50.000 0.00 0.00 40.36 3.71
104 105 2.206750 CGGAAGTTGTTGGTCTTCGAA 58.793 47.619 0.00 0.00 40.36 3.71
105 106 2.610374 CGGAAGTTGTTGGTCTTCGAAA 59.390 45.455 0.00 0.00 40.36 3.46
106 107 3.303132 CGGAAGTTGTTGGTCTTCGAAAG 60.303 47.826 0.00 0.00 40.36 2.62
107 108 3.626217 GGAAGTTGTTGGTCTTCGAAAGT 59.374 43.478 0.00 0.00 40.36 2.66
108 109 4.495844 GGAAGTTGTTGGTCTTCGAAAGTG 60.496 45.833 0.00 0.00 40.36 3.16
109 110 3.606687 AGTTGTTGGTCTTCGAAAGTGT 58.393 40.909 0.00 0.00 0.00 3.55
110 111 3.621715 AGTTGTTGGTCTTCGAAAGTGTC 59.378 43.478 0.00 0.00 0.00 3.67
111 112 2.557317 TGTTGGTCTTCGAAAGTGTCC 58.443 47.619 0.00 0.00 0.00 4.02
112 113 1.525619 GTTGGTCTTCGAAAGTGTCCG 59.474 52.381 0.00 0.00 0.00 4.79
113 114 1.034356 TGGTCTTCGAAAGTGTCCGA 58.966 50.000 0.00 0.00 0.00 4.55
114 115 1.000607 TGGTCTTCGAAAGTGTCCGAG 60.001 52.381 0.00 0.00 36.11 4.63
115 116 1.669211 GGTCTTCGAAAGTGTCCGAGG 60.669 57.143 0.00 0.00 36.11 4.63
116 117 1.000496 GTCTTCGAAAGTGTCCGAGGT 60.000 52.381 0.00 0.00 36.11 3.85
117 118 1.268899 TCTTCGAAAGTGTCCGAGGTC 59.731 52.381 0.00 0.00 36.11 3.85
118 119 0.039798 TTCGAAAGTGTCCGAGGTCG 60.040 55.000 0.00 0.00 36.11 4.79
128 129 4.517703 CGAGGTCGGTCGAGACGC 62.518 72.222 4.68 1.08 42.85 5.19
129 130 4.517703 GAGGTCGGTCGAGACGCG 62.518 72.222 3.53 3.53 41.81 6.01
135 136 4.719369 GGTCGAGACGCGGTGCTT 62.719 66.667 12.47 0.00 41.33 3.91
136 137 2.733593 GTCGAGACGCGGTGCTTT 60.734 61.111 12.47 0.00 41.33 3.51
137 138 2.733218 TCGAGACGCGGTGCTTTG 60.733 61.111 12.47 2.18 41.33 2.77
138 139 3.036084 CGAGACGCGGTGCTTTGT 61.036 61.111 12.47 0.00 36.03 2.83
139 140 2.551270 GAGACGCGGTGCTTTGTG 59.449 61.111 12.47 0.00 0.00 3.33
140 141 2.203015 AGACGCGGTGCTTTGTGT 60.203 55.556 12.47 0.00 0.00 3.72
141 142 2.159272 GAGACGCGGTGCTTTGTGTC 62.159 60.000 12.47 7.85 44.00 3.67
142 143 2.512745 ACGCGGTGCTTTGTGTCA 60.513 55.556 12.47 0.00 0.00 3.58
143 144 2.052237 CGCGGTGCTTTGTGTCAC 60.052 61.111 0.00 0.00 0.00 3.67
144 145 2.534019 CGCGGTGCTTTGTGTCACT 61.534 57.895 0.00 0.00 33.91 3.41
145 146 1.727467 GCGGTGCTTTGTGTCACTT 59.273 52.632 4.27 0.00 33.91 3.16
146 147 0.100503 GCGGTGCTTTGTGTCACTTT 59.899 50.000 4.27 0.00 33.91 2.66
147 148 1.332375 GCGGTGCTTTGTGTCACTTTA 59.668 47.619 4.27 0.00 33.91 1.85
148 149 2.602217 GCGGTGCTTTGTGTCACTTTAG 60.602 50.000 4.27 0.41 33.91 1.85
149 150 2.032030 CGGTGCTTTGTGTCACTTTAGG 60.032 50.000 4.27 0.00 33.91 2.69
150 151 3.211045 GGTGCTTTGTGTCACTTTAGGA 58.789 45.455 4.27 0.00 33.91 2.94
151 152 3.821033 GGTGCTTTGTGTCACTTTAGGAT 59.179 43.478 4.27 0.00 33.91 3.24
152 153 5.001232 GGTGCTTTGTGTCACTTTAGGATA 58.999 41.667 4.27 0.00 33.91 2.59
153 154 5.648092 GGTGCTTTGTGTCACTTTAGGATAT 59.352 40.000 4.27 0.00 33.91 1.63
154 155 6.403636 GGTGCTTTGTGTCACTTTAGGATATG 60.404 42.308 4.27 0.00 33.91 1.78
155 156 5.123820 TGCTTTGTGTCACTTTAGGATATGC 59.876 40.000 4.27 0.00 0.00 3.14
156 157 5.355350 GCTTTGTGTCACTTTAGGATATGCT 59.645 40.000 1.17 1.17 0.00 3.79
157 158 6.457528 GCTTTGTGTCACTTTAGGATATGCTC 60.458 42.308 0.00 0.00 0.00 4.26
158 159 5.939764 TGTGTCACTTTAGGATATGCTCT 57.060 39.130 0.00 0.00 0.00 4.09
159 160 6.299805 TGTGTCACTTTAGGATATGCTCTT 57.700 37.500 0.00 0.00 0.00 2.85
160 161 6.711277 TGTGTCACTTTAGGATATGCTCTTT 58.289 36.000 0.00 0.00 0.00 2.52
161 162 7.168219 TGTGTCACTTTAGGATATGCTCTTTT 58.832 34.615 0.00 0.00 0.00 2.27
162 163 8.318412 TGTGTCACTTTAGGATATGCTCTTTTA 58.682 33.333 0.00 0.00 0.00 1.52
163 164 8.604890 GTGTCACTTTAGGATATGCTCTTTTAC 58.395 37.037 0.00 0.00 0.00 2.01
164 165 7.491372 TGTCACTTTAGGATATGCTCTTTTACG 59.509 37.037 0.00 0.00 0.00 3.18
165 166 7.491696 GTCACTTTAGGATATGCTCTTTTACGT 59.508 37.037 0.00 0.00 0.00 3.57
166 167 8.038944 TCACTTTAGGATATGCTCTTTTACGTT 58.961 33.333 0.00 0.00 0.00 3.99
167 168 8.116753 CACTTTAGGATATGCTCTTTTACGTTG 58.883 37.037 0.00 0.00 0.00 4.10
168 169 7.822822 ACTTTAGGATATGCTCTTTTACGTTGT 59.177 33.333 0.00 0.00 0.00 3.32
169 170 9.309516 CTTTAGGATATGCTCTTTTACGTTGTA 57.690 33.333 0.00 0.00 0.00 2.41
170 171 8.867112 TTAGGATATGCTCTTTTACGTTGTAG 57.133 34.615 0.00 0.00 0.00 2.74
171 172 5.753921 AGGATATGCTCTTTTACGTTGTAGC 59.246 40.000 0.00 0.00 0.00 3.58
172 173 5.753921 GGATATGCTCTTTTACGTTGTAGCT 59.246 40.000 0.00 0.00 0.00 3.32
173 174 6.258068 GGATATGCTCTTTTACGTTGTAGCTT 59.742 38.462 0.00 0.00 0.00 3.74
174 175 4.725556 TGCTCTTTTACGTTGTAGCTTG 57.274 40.909 0.00 0.00 0.00 4.01
175 176 3.059188 TGCTCTTTTACGTTGTAGCTTGC 60.059 43.478 0.00 0.00 0.00 4.01
176 177 3.186613 GCTCTTTTACGTTGTAGCTTGCT 59.813 43.478 0.00 0.00 0.00 3.91
177 178 4.666908 GCTCTTTTACGTTGTAGCTTGCTC 60.667 45.833 0.00 0.00 0.00 4.26
178 179 3.427528 TCTTTTACGTTGTAGCTTGCTCG 59.572 43.478 0.00 0.00 0.00 5.03
179 180 2.710220 TTACGTTGTAGCTTGCTCGA 57.290 45.000 0.00 0.00 0.00 4.04
180 181 1.973138 TACGTTGTAGCTTGCTCGAC 58.027 50.000 0.00 1.13 0.00 4.20
181 182 1.002250 ACGTTGTAGCTTGCTCGACG 61.002 55.000 21.46 21.46 42.43 5.12
182 183 1.674611 CGTTGTAGCTTGCTCGACGG 61.675 60.000 18.25 7.64 35.95 4.79
183 184 0.666577 GTTGTAGCTTGCTCGACGGT 60.667 55.000 0.00 0.00 0.00 4.83
184 185 0.666274 TTGTAGCTTGCTCGACGGTG 60.666 55.000 0.00 0.00 0.00 4.94
185 186 1.080705 GTAGCTTGCTCGACGGTGT 60.081 57.895 0.00 0.00 0.00 4.16
186 187 0.666577 GTAGCTTGCTCGACGGTGTT 60.667 55.000 0.00 0.00 0.00 3.32
187 188 0.032952 TAGCTTGCTCGACGGTGTTT 59.967 50.000 0.00 0.00 0.00 2.83
188 189 0.814010 AGCTTGCTCGACGGTGTTTT 60.814 50.000 0.00 0.00 0.00 2.43
189 190 0.028902 GCTTGCTCGACGGTGTTTTT 59.971 50.000 0.00 0.00 0.00 1.94
208 209 5.966742 TTTTTCCTTTTTGGTTTGGTTGG 57.033 34.783 0.00 0.00 37.07 3.77
209 210 4.642466 TTTCCTTTTTGGTTTGGTTGGT 57.358 36.364 0.00 0.00 37.07 3.67
210 211 4.642466 TTCCTTTTTGGTTTGGTTGGTT 57.358 36.364 0.00 0.00 37.07 3.67
211 212 3.944087 TCCTTTTTGGTTTGGTTGGTTG 58.056 40.909 0.00 0.00 37.07 3.77
212 213 3.328050 TCCTTTTTGGTTTGGTTGGTTGT 59.672 39.130 0.00 0.00 37.07 3.32
213 214 3.438434 CCTTTTTGGTTTGGTTGGTTGTG 59.562 43.478 0.00 0.00 0.00 3.33
214 215 4.319177 CTTTTTGGTTTGGTTGGTTGTGA 58.681 39.130 0.00 0.00 0.00 3.58
215 216 4.559862 TTTTGGTTTGGTTGGTTGTGAT 57.440 36.364 0.00 0.00 0.00 3.06
216 217 3.533606 TTGGTTTGGTTGGTTGTGATG 57.466 42.857 0.00 0.00 0.00 3.07
217 218 2.461695 TGGTTTGGTTGGTTGTGATGT 58.538 42.857 0.00 0.00 0.00 3.06
218 219 2.834549 TGGTTTGGTTGGTTGTGATGTT 59.165 40.909 0.00 0.00 0.00 2.71
219 220 3.118956 TGGTTTGGTTGGTTGTGATGTTC 60.119 43.478 0.00 0.00 0.00 3.18
220 221 3.118956 GGTTTGGTTGGTTGTGATGTTCA 60.119 43.478 0.00 0.00 0.00 3.18
221 222 4.442753 GGTTTGGTTGGTTGTGATGTTCAT 60.443 41.667 0.00 0.00 0.00 2.57
222 223 4.319139 TTGGTTGGTTGTGATGTTCATG 57.681 40.909 0.00 0.00 0.00 3.07
223 224 2.035704 TGGTTGGTTGTGATGTTCATGC 59.964 45.455 0.00 0.00 0.00 4.06
224 225 2.297033 GGTTGGTTGTGATGTTCATGCT 59.703 45.455 0.00 0.00 0.00 3.79
225 226 3.505680 GGTTGGTTGTGATGTTCATGCTA 59.494 43.478 0.00 0.00 0.00 3.49
226 227 4.475944 GTTGGTTGTGATGTTCATGCTAC 58.524 43.478 0.00 0.00 0.00 3.58
227 228 3.749226 TGGTTGTGATGTTCATGCTACA 58.251 40.909 3.44 3.44 0.00 2.74
228 229 3.501828 TGGTTGTGATGTTCATGCTACAC 59.498 43.478 3.07 0.00 0.00 2.90
229 230 3.753272 GGTTGTGATGTTCATGCTACACT 59.247 43.478 3.07 0.00 0.00 3.55
230 231 4.142816 GGTTGTGATGTTCATGCTACACTC 60.143 45.833 3.07 4.06 0.00 3.51
231 232 3.253230 TGTGATGTTCATGCTACACTCG 58.747 45.455 3.07 0.00 0.00 4.18
232 233 3.254060 GTGATGTTCATGCTACACTCGT 58.746 45.455 3.07 0.00 0.00 4.18
233 234 4.082463 TGTGATGTTCATGCTACACTCGTA 60.082 41.667 3.07 0.00 0.00 3.43
234 235 4.862574 GTGATGTTCATGCTACACTCGTAA 59.137 41.667 3.07 0.00 0.00 3.18
235 236 4.862574 TGATGTTCATGCTACACTCGTAAC 59.137 41.667 3.07 0.00 0.00 2.50
236 237 4.514781 TGTTCATGCTACACTCGTAACT 57.485 40.909 0.00 0.00 0.00 2.24
237 238 4.482386 TGTTCATGCTACACTCGTAACTC 58.518 43.478 0.00 0.00 0.00 3.01
238 239 3.400505 TCATGCTACACTCGTAACTCG 57.599 47.619 0.00 0.00 41.41 4.18
239 240 2.745821 TCATGCTACACTCGTAACTCGT 59.254 45.455 0.00 0.00 40.80 4.18
240 241 3.189910 TCATGCTACACTCGTAACTCGTT 59.810 43.478 0.00 0.00 40.80 3.85
241 242 2.924903 TGCTACACTCGTAACTCGTTG 58.075 47.619 0.00 0.00 40.80 4.10
242 243 2.291465 TGCTACACTCGTAACTCGTTGT 59.709 45.455 0.00 0.00 40.80 3.32
243 244 3.243168 TGCTACACTCGTAACTCGTTGTT 60.243 43.478 0.00 2.66 42.31 2.83
244 245 3.732721 GCTACACTCGTAACTCGTTGTTT 59.267 43.478 2.43 0.00 39.89 2.83
245 246 4.374707 GCTACACTCGTAACTCGTTGTTTG 60.375 45.833 2.43 0.00 39.89 2.93
246 247 2.283351 ACACTCGTAACTCGTTGTTTGC 59.717 45.455 2.43 0.00 39.89 3.68
247 248 2.283086 CACTCGTAACTCGTTGTTTGCA 59.717 45.455 2.43 0.00 39.89 4.08
248 249 3.059868 CACTCGTAACTCGTTGTTTGCAT 60.060 43.478 0.00 0.00 39.89 3.96
249 250 3.183775 ACTCGTAACTCGTTGTTTGCATC 59.816 43.478 0.00 0.00 39.89 3.91
250 251 2.154198 TCGTAACTCGTTGTTTGCATCG 59.846 45.455 0.00 0.00 39.89 3.84
251 252 2.154198 CGTAACTCGTTGTTTGCATCGA 59.846 45.455 0.00 0.00 42.38 3.59
255 256 1.859383 TCGTTGTTTGCATCGAGTGA 58.141 45.000 0.00 0.00 40.54 3.41
256 257 2.412870 TCGTTGTTTGCATCGAGTGAT 58.587 42.857 0.00 0.00 40.54 3.06
257 258 3.580731 TCGTTGTTTGCATCGAGTGATA 58.419 40.909 0.00 0.00 40.54 2.15
258 259 3.612423 TCGTTGTTTGCATCGAGTGATAG 59.388 43.478 0.00 0.00 40.54 2.08
259 260 3.674423 GTTGTTTGCATCGAGTGATAGC 58.326 45.455 0.00 0.00 32.18 2.97
260 261 1.926510 TGTTTGCATCGAGTGATAGCG 59.073 47.619 0.00 0.00 33.84 4.26
261 262 0.930310 TTTGCATCGAGTGATAGCGC 59.070 50.000 0.00 0.00 33.84 5.92
262 263 0.103026 TTGCATCGAGTGATAGCGCT 59.897 50.000 17.26 17.26 37.63 5.92
263 264 0.103026 TGCATCGAGTGATAGCGCTT 59.897 50.000 18.68 2.89 34.37 4.68
264 265 1.212616 GCATCGAGTGATAGCGCTTT 58.787 50.000 18.68 8.03 34.37 3.51
265 266 1.594862 GCATCGAGTGATAGCGCTTTT 59.405 47.619 18.68 3.01 34.37 2.27
266 267 2.598439 GCATCGAGTGATAGCGCTTTTG 60.598 50.000 18.68 1.72 34.37 2.44
267 268 2.363788 TCGAGTGATAGCGCTTTTGT 57.636 45.000 18.68 0.00 34.37 2.83
268 269 3.497297 TCGAGTGATAGCGCTTTTGTA 57.503 42.857 18.68 0.00 34.37 2.41
269 270 3.840468 TCGAGTGATAGCGCTTTTGTAA 58.160 40.909 18.68 0.00 34.37 2.41
270 271 4.430007 TCGAGTGATAGCGCTTTTGTAAT 58.570 39.130 18.68 0.00 34.37 1.89
271 272 4.868171 TCGAGTGATAGCGCTTTTGTAATT 59.132 37.500 18.68 0.00 34.37 1.40
272 273 4.957967 CGAGTGATAGCGCTTTTGTAATTG 59.042 41.667 18.68 0.00 34.37 2.32
273 274 5.220397 CGAGTGATAGCGCTTTTGTAATTGA 60.220 40.000 18.68 0.00 34.37 2.57
274 275 6.494893 AGTGATAGCGCTTTTGTAATTGAA 57.505 33.333 18.68 0.00 0.00 2.69
275 276 6.908825 AGTGATAGCGCTTTTGTAATTGAAA 58.091 32.000 18.68 0.00 0.00 2.69
276 277 7.538575 AGTGATAGCGCTTTTGTAATTGAAAT 58.461 30.769 18.68 0.00 0.00 2.17
277 278 8.028938 AGTGATAGCGCTTTTGTAATTGAAATT 58.971 29.630 18.68 0.00 0.00 1.82
278 279 8.647226 GTGATAGCGCTTTTGTAATTGAAATTT 58.353 29.630 18.68 0.00 0.00 1.82
279 280 9.202273 TGATAGCGCTTTTGTAATTGAAATTTT 57.798 25.926 18.68 0.00 0.00 1.82
280 281 9.464248 GATAGCGCTTTTGTAATTGAAATTTTG 57.536 29.630 18.68 0.00 0.00 2.44
281 282 7.245419 AGCGCTTTTGTAATTGAAATTTTGT 57.755 28.000 2.64 0.00 0.00 2.83
282 283 7.344441 AGCGCTTTTGTAATTGAAATTTTGTC 58.656 30.769 2.64 0.00 0.00 3.18
283 284 7.224557 AGCGCTTTTGTAATTGAAATTTTGTCT 59.775 29.630 2.64 0.00 0.00 3.41
284 285 7.850492 GCGCTTTTGTAATTGAAATTTTGTCTT 59.150 29.630 0.00 0.00 0.00 3.01
285 286 9.356929 CGCTTTTGTAATTGAAATTTTGTCTTC 57.643 29.630 0.00 0.00 0.00 2.87
353 354 3.344515 AGTACAAAGATTTCCGCCTTCC 58.655 45.455 0.00 0.00 0.00 3.46
387 388 1.875514 CGATGAGCCTCTCTCTCTCAG 59.124 57.143 0.00 0.00 42.38 3.35
1254 1273 4.015084 TCCGATCTCGTCTTTTAGGTCTT 58.985 43.478 0.00 0.00 37.74 3.01
1417 1436 5.949952 TGTAGCGGCAGATATTCCTTAGATA 59.050 40.000 1.45 0.00 0.00 1.98
1418 1437 6.607600 TGTAGCGGCAGATATTCCTTAGATAT 59.392 38.462 1.45 0.00 0.00 1.63
1419 1438 6.155475 AGCGGCAGATATTCCTTAGATATC 57.845 41.667 1.45 0.00 0.00 1.63
1420 1439 5.069781 AGCGGCAGATATTCCTTAGATATCC 59.930 44.000 1.45 0.00 0.00 2.59
1421 1440 5.069781 GCGGCAGATATTCCTTAGATATCCT 59.930 44.000 0.00 0.00 0.00 3.24
1422 1441 6.407525 GCGGCAGATATTCCTTAGATATCCTT 60.408 42.308 0.00 0.00 0.00 3.36
1423 1442 7.560368 CGGCAGATATTCCTTAGATATCCTTT 58.440 38.462 0.00 0.00 0.00 3.11
1424 1443 7.493971 CGGCAGATATTCCTTAGATATCCTTTG 59.506 40.741 0.00 0.00 0.00 2.77
1433 1452 8.423906 TCCTTAGATATCCTTTGTAGACATCC 57.576 38.462 0.00 0.00 0.00 3.51
1434 1453 7.455008 TCCTTAGATATCCTTTGTAGACATCCC 59.545 40.741 0.00 0.00 0.00 3.85
1533 1552 5.709164 AGCCTCATATGATTTACAATGCCTC 59.291 40.000 5.72 0.00 0.00 4.70
1583 1602 0.105504 AATTTGCTATCCTGGGGCCC 60.106 55.000 18.17 18.17 0.00 5.80
1616 1635 5.455326 CGAATTTGAGGGAGGAATCTACCAT 60.455 44.000 0.00 0.00 46.84 3.55
1620 1639 2.635427 GAGGGAGGAATCTACCATGGAC 59.365 54.545 21.47 2.23 46.84 4.02
1741 1762 5.710513 ATGCTTTTTGTGAGCTGTTGATA 57.289 34.783 0.00 0.00 40.75 2.15
1773 1795 7.347222 TGCTTTGTCTTCTCCCCTTTATCTATA 59.653 37.037 0.00 0.00 0.00 1.31
1826 1848 8.571461 TTCAGAAGAAGATATGTTTGAGCATT 57.429 30.769 0.00 0.00 0.00 3.56
1829 1851 7.914346 CAGAAGAAGATATGTTTGAGCATTTCC 59.086 37.037 0.00 0.00 30.53 3.13
1859 1881 3.200593 GAGCACTGGCAGCCATCG 61.201 66.667 16.64 10.38 44.61 3.84
1903 1925 3.940209 TTGTAAAATGGCTGCTCAAGG 57.060 42.857 0.00 0.00 0.00 3.61
1977 2154 8.798153 GCATGTTTTAAGTGCTGTTATAATGTC 58.202 33.333 0.00 0.00 36.02 3.06
1992 2176 8.043113 TGTTATAATGTCATATCAGAGGCATCC 58.957 37.037 0.00 0.00 0.00 3.51
2030 2219 8.810652 TTAATGTAACAGTTGCCTTTTTCATC 57.189 30.769 0.00 0.00 0.00 2.92
2036 2225 6.959639 ACAGTTGCCTTTTTCATCTTCTTA 57.040 33.333 0.00 0.00 0.00 2.10
2073 2262 5.640189 AAAGCACGACTATGTGTAGTAGT 57.360 39.130 0.00 0.00 44.39 2.73
2117 2314 0.407139 ATGATAAGCCCTGCCATCCC 59.593 55.000 0.00 0.00 0.00 3.85
2156 2354 8.893727 CAAGAACCGGATATATTCCAAATATCC 58.106 37.037 9.46 10.73 46.47 2.59
2183 2401 0.686769 AATCGCTACTCGGACCCCTT 60.687 55.000 0.00 0.00 39.05 3.95
2193 2411 2.037772 CTCGGACCCCTTCTTGATATGG 59.962 54.545 0.00 0.00 0.00 2.74
2268 2486 0.468958 TTGGCCCAAAACTGCTGCTA 60.469 50.000 0.00 0.00 0.00 3.49
2400 2629 9.707957 CATCTCCCCTATGTAGATCTAGTAATT 57.292 37.037 1.64 0.00 0.00 1.40
2441 2670 7.095439 GCACATCTATCTAATTTAGAGCACACC 60.095 40.741 11.56 0.00 38.38 4.16
2485 2714 3.754323 TGCAGGTTTATAACACTTTCCCG 59.246 43.478 0.00 0.00 0.00 5.14
2503 2732 2.618241 CCCGTGCTACATTAATGTGCAT 59.382 45.455 30.48 12.87 42.31 3.96
2551 2780 4.791734 CATTGCATGTTGCTATGTAGCCTG 60.792 45.833 13.41 3.84 46.39 4.85
2571 2800 4.785376 CCTGGGATATATAGATATGGCCCC 59.215 50.000 0.00 8.12 36.97 5.80
2930 3244 5.707298 ACTTATCACTGAACCACCTTGATTG 59.293 40.000 0.00 0.00 0.00 2.67
2937 3251 5.067283 ACTGAACCACCTTGATTGTTACAAC 59.933 40.000 0.00 0.00 0.00 3.32
2974 3288 7.395190 TGTAAGATTAGATTGCAAGCATGTT 57.605 32.000 18.24 9.73 0.00 2.71
3014 3328 8.682128 TGTTCTTAGTTTGTTCACATTTTGTC 57.318 30.769 0.00 0.00 0.00 3.18
3015 3329 8.300286 TGTTCTTAGTTTGTTCACATTTTGTCA 58.700 29.630 0.00 0.00 0.00 3.58
3059 3373 8.593679 TCATTTATTGTCTAGTCTTGACTCCAA 58.406 33.333 14.30 9.09 35.63 3.53
3367 3684 3.485463 TTGGGTTCACTGGACTACAAG 57.515 47.619 0.00 0.00 0.00 3.16
3385 3702 3.764434 ACAAGAAGGAAGATAGACGAGCA 59.236 43.478 0.00 0.00 0.00 4.26
3451 3768 4.082787 CCAGAACGCCAAAGTGTAATTGAT 60.083 41.667 0.00 0.00 35.03 2.57
3465 3782 8.293699 AGTGTAATTGATGAGGTAAAATTCCC 57.706 34.615 0.00 0.00 0.00 3.97
3466 3783 7.893302 AGTGTAATTGATGAGGTAAAATTCCCA 59.107 33.333 0.00 0.00 0.00 4.37
3475 3792 5.659079 TGAGGTAAAATTCCCAACACACTTT 59.341 36.000 0.00 0.00 0.00 2.66
3476 3793 5.912892 AGGTAAAATTCCCAACACACTTTG 58.087 37.500 0.00 0.00 0.00 2.77
3482 3799 4.712122 TTCCCAACACACTTTGAAGAAC 57.288 40.909 0.00 0.00 0.00 3.01
3483 3800 3.963129 TCCCAACACACTTTGAAGAACT 58.037 40.909 0.00 0.00 0.00 3.01
3484 3801 4.340617 TCCCAACACACTTTGAAGAACTT 58.659 39.130 0.00 0.00 0.00 2.66
3576 3893 2.054799 AGTAAAGCTCCACCTGTTCCA 58.945 47.619 0.00 0.00 0.00 3.53
3585 3902 1.202758 CCACCTGTTCCACAACTGCTA 60.203 52.381 0.00 0.00 33.17 3.49
3633 3953 3.050275 GCACCCGACACTTCTGGC 61.050 66.667 0.00 0.00 29.08 4.85
3676 3996 0.839946 AGGTGTCAACACTTCTGGCT 59.160 50.000 12.65 0.00 45.73 4.75
3677 3997 1.202698 AGGTGTCAACACTTCTGGCTC 60.203 52.381 12.65 0.00 45.73 4.70
3720 4043 1.740025 GACCTTCCAAAGCCTGATTCG 59.260 52.381 0.00 0.00 0.00 3.34
3746 4069 5.126061 AGTCAGAAGTTGCAGAAAACATTGT 59.874 36.000 0.00 0.00 32.21 2.71
3747 4070 5.230726 GTCAGAAGTTGCAGAAAACATTGTG 59.769 40.000 0.00 0.00 32.21 3.33
3748 4071 4.505191 CAGAAGTTGCAGAAAACATTGTGG 59.495 41.667 0.00 0.00 32.21 4.17
3759 4082 0.326264 ACATTGTGGGAGCTCAGTCC 59.674 55.000 17.19 8.36 35.64 3.85
3786 4109 2.445845 CCCAGGGATAGCGGTCCA 60.446 66.667 0.00 0.00 40.17 4.02
3796 4119 2.163818 TAGCGGTCCAAGAGTTGTTG 57.836 50.000 0.00 0.00 0.00 3.33
3891 4214 2.485124 GCTGACTCTTGCTATCATGGCT 60.485 50.000 0.00 0.00 0.00 4.75
3894 4217 3.453717 TGACTCTTGCTATCATGGCTCTT 59.546 43.478 0.00 0.00 0.00 2.85
3924 4247 4.860072 AGAAGTTCTTCAAAATCAACGGC 58.140 39.130 13.85 0.00 0.00 5.68
3972 4296 7.871853 AGTTTTAGGTAGTTTGTGCATAAGTG 58.128 34.615 0.00 0.00 0.00 3.16
4117 4444 2.243221 AGATGGTGGTACTACCCGTACT 59.757 50.000 24.14 14.70 46.19 2.73
4189 4516 3.303526 CGTGTGTGCCTTAAGTTGTAACC 60.304 47.826 0.97 0.00 0.00 2.85
4267 4594 8.730680 TCTTCAGGAAAATATAAGCAACTGAAC 58.269 33.333 0.00 0.00 38.39 3.18
4272 4599 8.462016 AGGAAAATATAAGCAACTGAACATGAC 58.538 33.333 0.00 0.00 0.00 3.06
4315 4660 3.487563 AAAAATTAGGGAGCGCTTTCG 57.512 42.857 13.26 0.00 39.07 3.46
4373 4718 4.080863 GGCTTCTCCAAACCAGAAGAGATA 60.081 45.833 12.60 0.00 46.88 1.98
4392 4738 2.116983 AACGCTGGGCAGATGACAGT 62.117 55.000 0.00 0.00 34.79 3.55
4417 4763 3.006752 TGGACTTGGATCCATTTGTTTGC 59.993 43.478 17.06 2.56 44.14 3.68
4427 4773 2.739913 CCATTTGTTTGCTTGATGCCTG 59.260 45.455 0.00 0.00 42.00 4.85
4430 4776 2.284754 TGTTTGCTTGATGCCTGGTA 57.715 45.000 0.00 0.00 42.00 3.25
4433 4779 1.176527 TTGCTTGATGCCTGGTAAGC 58.823 50.000 15.31 15.31 44.26 3.09
4437 4783 1.398390 CTTGATGCCTGGTAAGCGAAC 59.602 52.381 0.00 0.00 0.00 3.95
4438 4784 0.613260 TGATGCCTGGTAAGCGAACT 59.387 50.000 0.00 0.00 0.00 3.01
4440 4786 1.398390 GATGCCTGGTAAGCGAACTTG 59.602 52.381 0.00 0.00 36.57 3.16
4441 4787 0.107831 TGCCTGGTAAGCGAACTTGT 59.892 50.000 0.00 0.00 36.57 3.16
4442 4788 0.517316 GCCTGGTAAGCGAACTTGTG 59.483 55.000 0.00 0.00 36.57 3.33
4448 5515 1.069906 GTAAGCGAACTTGTGGCACAG 60.070 52.381 20.97 16.47 36.64 3.66
4466 5533 2.897326 ACAGGTGGGAAAAGTAATTGCC 59.103 45.455 0.00 0.00 40.87 4.52
4467 5534 2.094752 CAGGTGGGAAAAGTAATTGCCG 60.095 50.000 0.00 0.00 43.18 5.69
4473 5540 4.456566 TGGGAAAAGTAATTGCCGTAGAAC 59.543 41.667 0.00 0.00 43.18 3.01
4491 5559 1.972588 ACTTATCTGGCAGGGGAAGT 58.027 50.000 15.73 17.16 0.00 3.01
4493 5561 2.239907 ACTTATCTGGCAGGGGAAGTTC 59.760 50.000 15.73 0.00 0.00 3.01
4494 5562 1.965414 TATCTGGCAGGGGAAGTTCA 58.035 50.000 15.73 0.00 0.00 3.18
4495 5563 1.302907 ATCTGGCAGGGGAAGTTCAT 58.697 50.000 15.73 0.00 0.00 2.57
4496 5564 1.965414 TCTGGCAGGGGAAGTTCATA 58.035 50.000 15.73 0.00 0.00 2.15
4497 5565 1.559682 TCTGGCAGGGGAAGTTCATAC 59.440 52.381 15.73 0.00 0.00 2.39
4498 5566 1.561542 CTGGCAGGGGAAGTTCATACT 59.438 52.381 6.61 0.00 35.68 2.12
4499 5567 1.281867 TGGCAGGGGAAGTTCATACTG 59.718 52.381 5.01 10.18 34.01 2.74
4501 5569 2.019156 GCAGGGGAAGTTCATACTGGC 61.019 57.143 17.11 9.42 34.01 4.85
4513 5583 4.597404 TCATACTGGCTAGATCAAGCAG 57.403 45.455 3.17 0.00 44.64 4.24
4522 5592 4.440880 GCTAGATCAAGCAGAAGATGTGT 58.559 43.478 0.00 0.00 42.30 3.72
4523 5593 4.270566 GCTAGATCAAGCAGAAGATGTGTG 59.729 45.833 0.00 0.00 42.30 3.82
4529 5599 2.540383 AGCAGAAGATGTGTGACCCTA 58.460 47.619 0.00 0.00 0.00 3.53
4536 5606 5.129485 AGAAGATGTGTGACCCTATTACAGG 59.871 44.000 0.00 0.00 45.07 4.00
4558 5628 5.046159 AGGAAATACGGTGAAGGAACATACA 60.046 40.000 0.00 0.00 0.00 2.29
4559 5629 5.820947 GGAAATACGGTGAAGGAACATACAT 59.179 40.000 0.00 0.00 0.00 2.29
4560 5630 6.238374 GGAAATACGGTGAAGGAACATACATG 60.238 42.308 0.00 0.00 0.00 3.21
4562 5632 4.487714 ACGGTGAAGGAACATACATGAT 57.512 40.909 0.00 0.00 0.00 2.45
4563 5633 5.607939 ACGGTGAAGGAACATACATGATA 57.392 39.130 0.00 0.00 0.00 2.15
4564 5634 5.357257 ACGGTGAAGGAACATACATGATAC 58.643 41.667 0.00 0.00 0.00 2.24
4565 5635 5.105106 ACGGTGAAGGAACATACATGATACA 60.105 40.000 0.00 0.00 0.00 2.29
4579 5649 2.616960 TGATACATCACGTTGCCTGAC 58.383 47.619 0.00 0.00 0.00 3.51
4582 5652 0.667487 ACATCACGTTGCCTGACGAG 60.667 55.000 10.70 3.92 45.47 4.18
4583 5653 0.667487 CATCACGTTGCCTGACGAGT 60.667 55.000 10.70 0.00 45.47 4.18
4591 7524 0.318441 TGCCTGACGAGTCTTTGAGG 59.682 55.000 4.78 4.19 0.00 3.86
4604 7537 1.959282 CTTTGAGGCTCAAAACTGGCT 59.041 47.619 34.65 0.00 44.69 4.75
4653 7586 5.485662 AAACAGTAGTGTGCTTCAAGAAC 57.514 39.130 3.39 0.00 36.84 3.01
4667 7623 1.197721 CAAGAACAGTTGGATCCGCAC 59.802 52.381 7.39 6.52 0.00 5.34
4675 7631 1.339929 GTTGGATCCGCACAAAACCTT 59.660 47.619 7.39 0.00 0.00 3.50
4676 7632 2.554893 GTTGGATCCGCACAAAACCTTA 59.445 45.455 7.39 0.00 0.00 2.69
4719 7675 6.956299 CAAAAATTTGTATCCAAGCAGAGG 57.044 37.500 0.00 0.00 33.59 3.69
4721 7677 2.128771 TTTGTATCCAAGCAGAGGGC 57.871 50.000 0.00 0.00 45.30 5.19
4722 7678 0.255890 TTGTATCCAAGCAGAGGGCC 59.744 55.000 0.00 0.00 46.50 5.80
4754 7726 1.198397 CGTCGACTCACGTGCAAAC 59.802 57.895 11.67 3.66 43.13 2.93
4775 7747 3.124636 ACATCTTACCGCAAACGATGAAC 59.875 43.478 0.00 0.00 43.93 3.18
4878 7850 1.740297 ACAGCGTGGTACAAACACAA 58.260 45.000 0.00 0.00 44.16 3.33
4919 7891 0.399454 ATGCTTGGAGCGGCATAGAT 59.601 50.000 1.45 0.00 46.26 1.98
4920 7892 0.181114 TGCTTGGAGCGGCATAGATT 59.819 50.000 1.45 0.00 46.26 2.40
5011 7983 5.134339 TCCATCAATAAGGCCATACTCCTTT 59.866 40.000 5.01 0.00 40.87 3.11
5184 8156 2.925563 GACTGGCAAAGCAACAATATGC 59.074 45.455 0.00 0.00 46.78 3.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.303398 AAGACTCGGTCCGCTCTGA 60.303 57.895 6.34 0.00 32.18 3.27
1 2 1.153939 CAAGACTCGGTCCGCTCTG 60.154 63.158 6.34 0.00 32.18 3.35
2 3 2.995872 GCAAGACTCGGTCCGCTCT 61.996 63.158 6.34 5.93 32.18 4.09
3 4 2.507324 GCAAGACTCGGTCCGCTC 60.507 66.667 6.34 3.44 32.18 5.03
4 5 4.070552 GGCAAGACTCGGTCCGCT 62.071 66.667 6.34 0.00 33.69 5.52
7 8 0.036388 TGAATGGCAAGACTCGGTCC 60.036 55.000 0.00 0.00 32.18 4.46
10 11 1.938577 CAGATGAATGGCAAGACTCGG 59.061 52.381 0.00 0.00 0.00 4.63
11 12 2.606725 GACAGATGAATGGCAAGACTCG 59.393 50.000 0.00 0.00 0.00 4.18
12 13 3.373439 GTGACAGATGAATGGCAAGACTC 59.627 47.826 0.00 0.00 40.74 3.36
13 14 3.008813 AGTGACAGATGAATGGCAAGACT 59.991 43.478 0.00 0.00 40.74 3.24
14 15 3.341823 AGTGACAGATGAATGGCAAGAC 58.658 45.455 0.00 0.00 40.74 3.01
15 16 3.708403 AGTGACAGATGAATGGCAAGA 57.292 42.857 0.00 0.00 40.74 3.02
16 17 3.128242 GGAAGTGACAGATGAATGGCAAG 59.872 47.826 0.00 0.00 40.74 4.01
17 18 3.084039 GGAAGTGACAGATGAATGGCAA 58.916 45.455 0.00 0.00 40.74 4.52
18 19 2.306805 AGGAAGTGACAGATGAATGGCA 59.693 45.455 0.00 0.00 35.24 4.92
19 20 2.996631 AGGAAGTGACAGATGAATGGC 58.003 47.619 0.00 0.00 0.00 4.40
20 21 6.094603 CCTTAAAGGAAGTGACAGATGAATGG 59.905 42.308 0.00 0.00 37.67 3.16
21 22 6.404074 GCCTTAAAGGAAGTGACAGATGAATG 60.404 42.308 0.00 0.00 37.67 2.67
22 23 5.649831 GCCTTAAAGGAAGTGACAGATGAAT 59.350 40.000 0.00 0.00 37.67 2.57
23 24 5.003804 GCCTTAAAGGAAGTGACAGATGAA 58.996 41.667 0.00 0.00 37.67 2.57
24 25 4.579869 GCCTTAAAGGAAGTGACAGATGA 58.420 43.478 0.00 0.00 37.67 2.92
25 26 3.372206 CGCCTTAAAGGAAGTGACAGATG 59.628 47.826 0.00 0.00 37.67 2.90
26 27 3.008049 ACGCCTTAAAGGAAGTGACAGAT 59.992 43.478 0.00 0.00 37.67 2.90
27 28 2.367567 ACGCCTTAAAGGAAGTGACAGA 59.632 45.455 0.00 0.00 37.67 3.41
28 29 2.767505 ACGCCTTAAAGGAAGTGACAG 58.232 47.619 0.00 0.00 37.67 3.51
29 30 2.922740 ACGCCTTAAAGGAAGTGACA 57.077 45.000 0.00 0.00 37.67 3.58
30 31 4.153655 CCTTAACGCCTTAAAGGAAGTGAC 59.846 45.833 0.00 0.00 37.67 3.67
31 32 4.040706 TCCTTAACGCCTTAAAGGAAGTGA 59.959 41.667 0.62 0.00 37.67 3.41
32 33 4.320870 TCCTTAACGCCTTAAAGGAAGTG 58.679 43.478 0.62 0.00 37.67 3.16
33 34 4.628963 TCCTTAACGCCTTAAAGGAAGT 57.371 40.909 0.62 0.00 37.67 3.01
34 35 4.335594 CCATCCTTAACGCCTTAAAGGAAG 59.664 45.833 7.09 3.30 37.67 3.46
35 36 4.019141 TCCATCCTTAACGCCTTAAAGGAA 60.019 41.667 7.09 0.00 37.67 3.36
36 37 3.520317 TCCATCCTTAACGCCTTAAAGGA 59.480 43.478 5.56 5.56 37.67 3.36
37 38 3.881220 TCCATCCTTAACGCCTTAAAGG 58.119 45.455 0.00 0.00 38.80 3.11
38 39 4.275936 CCATCCATCCTTAACGCCTTAAAG 59.724 45.833 0.00 0.00 0.00 1.85
39 40 4.204012 CCATCCATCCTTAACGCCTTAAA 58.796 43.478 0.00 0.00 0.00 1.52
40 41 3.201266 ACCATCCATCCTTAACGCCTTAA 59.799 43.478 0.00 0.00 0.00 1.85
41 42 2.775384 ACCATCCATCCTTAACGCCTTA 59.225 45.455 0.00 0.00 0.00 2.69
42 43 1.564348 ACCATCCATCCTTAACGCCTT 59.436 47.619 0.00 0.00 0.00 4.35
43 44 1.134098 CACCATCCATCCTTAACGCCT 60.134 52.381 0.00 0.00 0.00 5.52
44 45 1.308998 CACCATCCATCCTTAACGCC 58.691 55.000 0.00 0.00 0.00 5.68
45 46 0.663153 GCACCATCCATCCTTAACGC 59.337 55.000 0.00 0.00 0.00 4.84
46 47 0.937304 CGCACCATCCATCCTTAACG 59.063 55.000 0.00 0.00 0.00 3.18
47 48 2.038387 ACGCACCATCCATCCTTAAC 57.962 50.000 0.00 0.00 0.00 2.01
48 49 2.026729 TCAACGCACCATCCATCCTTAA 60.027 45.455 0.00 0.00 0.00 1.85
49 50 1.557371 TCAACGCACCATCCATCCTTA 59.443 47.619 0.00 0.00 0.00 2.69
50 51 0.327924 TCAACGCACCATCCATCCTT 59.672 50.000 0.00 0.00 0.00 3.36
51 52 0.392998 GTCAACGCACCATCCATCCT 60.393 55.000 0.00 0.00 0.00 3.24
52 53 0.676466 TGTCAACGCACCATCCATCC 60.676 55.000 0.00 0.00 0.00 3.51
53 54 1.131126 CTTGTCAACGCACCATCCATC 59.869 52.381 0.00 0.00 0.00 3.51
54 55 1.167851 CTTGTCAACGCACCATCCAT 58.832 50.000 0.00 0.00 0.00 3.41
55 56 0.107643 TCTTGTCAACGCACCATCCA 59.892 50.000 0.00 0.00 0.00 3.41
56 57 0.798776 CTCTTGTCAACGCACCATCC 59.201 55.000 0.00 0.00 0.00 3.51
57 58 1.795768 TCTCTTGTCAACGCACCATC 58.204 50.000 0.00 0.00 0.00 3.51
58 59 2.254546 TTCTCTTGTCAACGCACCAT 57.745 45.000 0.00 0.00 0.00 3.55
59 60 2.143122 GATTCTCTTGTCAACGCACCA 58.857 47.619 0.00 0.00 0.00 4.17
60 61 2.417719 AGATTCTCTTGTCAACGCACC 58.582 47.619 0.00 0.00 0.00 5.01
61 62 4.214437 CAAAGATTCTCTTGTCAACGCAC 58.786 43.478 0.00 0.00 36.71 5.34
62 63 3.303990 GCAAAGATTCTCTTGTCAACGCA 60.304 43.478 9.05 0.00 36.71 5.24
63 64 3.229552 GCAAAGATTCTCTTGTCAACGC 58.770 45.455 9.05 0.00 36.71 4.84
64 65 3.473367 CGCAAAGATTCTCTTGTCAACG 58.527 45.455 9.05 0.00 36.71 4.10
65 66 3.498397 TCCGCAAAGATTCTCTTGTCAAC 59.502 43.478 9.05 0.00 36.71 3.18
66 67 3.738982 TCCGCAAAGATTCTCTTGTCAA 58.261 40.909 9.05 0.00 36.71 3.18
67 68 3.401033 TCCGCAAAGATTCTCTTGTCA 57.599 42.857 9.05 0.00 36.71 3.58
68 69 3.748568 ACTTCCGCAAAGATTCTCTTGTC 59.251 43.478 3.02 3.67 36.71 3.18
69 70 3.744660 ACTTCCGCAAAGATTCTCTTGT 58.255 40.909 3.02 0.00 36.71 3.16
70 71 4.023707 ACAACTTCCGCAAAGATTCTCTTG 60.024 41.667 3.02 0.00 36.71 3.02
71 72 4.137543 ACAACTTCCGCAAAGATTCTCTT 58.862 39.130 3.02 0.00 38.59 2.85
72 73 3.744660 ACAACTTCCGCAAAGATTCTCT 58.255 40.909 3.02 0.00 38.44 3.10
73 74 4.222114 CAACAACTTCCGCAAAGATTCTC 58.778 43.478 3.02 0.00 38.44 2.87
74 75 3.004734 CCAACAACTTCCGCAAAGATTCT 59.995 43.478 3.02 0.00 38.44 2.40
75 76 3.243401 ACCAACAACTTCCGCAAAGATTC 60.243 43.478 3.02 0.00 38.44 2.52
76 77 2.693074 ACCAACAACTTCCGCAAAGATT 59.307 40.909 3.02 0.00 38.44 2.40
77 78 2.293399 GACCAACAACTTCCGCAAAGAT 59.707 45.455 3.02 0.00 38.44 2.40
78 79 1.673920 GACCAACAACTTCCGCAAAGA 59.326 47.619 3.02 0.00 38.44 2.52
79 80 1.676006 AGACCAACAACTTCCGCAAAG 59.324 47.619 0.00 0.00 41.08 2.77
80 81 1.757682 AGACCAACAACTTCCGCAAA 58.242 45.000 0.00 0.00 0.00 3.68
81 82 1.673920 GAAGACCAACAACTTCCGCAA 59.326 47.619 0.00 0.00 37.22 4.85
82 83 1.305201 GAAGACCAACAACTTCCGCA 58.695 50.000 0.00 0.00 37.22 5.69
83 84 0.234884 CGAAGACCAACAACTTCCGC 59.765 55.000 0.00 0.00 39.19 5.54
84 85 1.860676 TCGAAGACCAACAACTTCCG 58.139 50.000 0.00 0.00 39.19 4.30
85 86 3.626217 ACTTTCGAAGACCAACAACTTCC 59.374 43.478 0.00 0.00 39.19 3.46
86 87 4.094442 ACACTTTCGAAGACCAACAACTTC 59.906 41.667 0.00 0.00 39.05 3.01
87 88 4.007659 ACACTTTCGAAGACCAACAACTT 58.992 39.130 0.00 0.00 34.32 2.66
88 89 3.606687 ACACTTTCGAAGACCAACAACT 58.393 40.909 0.00 0.00 34.32 3.16
89 90 3.242641 GGACACTTTCGAAGACCAACAAC 60.243 47.826 0.00 0.00 34.32 3.32
90 91 2.940410 GGACACTTTCGAAGACCAACAA 59.060 45.455 0.00 0.00 34.32 2.83
91 92 2.557317 GGACACTTTCGAAGACCAACA 58.443 47.619 0.00 0.00 34.32 3.33
92 93 1.525619 CGGACACTTTCGAAGACCAAC 59.474 52.381 0.00 0.00 34.32 3.77
93 94 1.409790 TCGGACACTTTCGAAGACCAA 59.590 47.619 0.00 0.00 34.32 3.67
94 95 1.000607 CTCGGACACTTTCGAAGACCA 60.001 52.381 0.00 0.00 34.32 4.02
95 96 1.669211 CCTCGGACACTTTCGAAGACC 60.669 57.143 0.00 0.00 34.32 3.85
96 97 1.000496 ACCTCGGACACTTTCGAAGAC 60.000 52.381 0.00 0.00 34.32 3.01
97 98 1.268899 GACCTCGGACACTTTCGAAGA 59.731 52.381 0.00 0.00 34.87 2.87
98 99 1.699343 GACCTCGGACACTTTCGAAG 58.301 55.000 0.00 0.00 34.87 3.79
99 100 0.039798 CGACCTCGGACACTTTCGAA 60.040 55.000 0.00 0.00 34.87 3.71
100 101 1.577922 CGACCTCGGACACTTTCGA 59.422 57.895 0.00 0.00 35.37 3.71
101 102 4.148230 CGACCTCGGACACTTTCG 57.852 61.111 0.00 0.00 35.37 3.46
111 112 4.517703 GCGTCTCGACCGACCTCG 62.518 72.222 4.05 0.00 39.44 4.63
112 113 4.517703 CGCGTCTCGACCGACCTC 62.518 72.222 0.00 0.00 41.67 3.85
118 119 4.719369 AAGCACCGCGTCTCGACC 62.719 66.667 4.92 0.00 41.67 4.79
119 120 2.733593 AAAGCACCGCGTCTCGAC 60.734 61.111 4.92 0.00 41.67 4.20
120 121 2.733218 CAAAGCACCGCGTCTCGA 60.733 61.111 4.92 0.00 41.67 4.04
121 122 3.036084 ACAAAGCACCGCGTCTCG 61.036 61.111 4.92 0.00 38.08 4.04
122 123 2.159272 GACACAAAGCACCGCGTCTC 62.159 60.000 4.92 0.00 0.00 3.36
123 124 2.203015 ACACAAAGCACCGCGTCT 60.203 55.556 4.92 0.00 0.00 4.18
124 125 2.248431 GACACAAAGCACCGCGTC 59.752 61.111 4.92 0.00 0.00 5.19
125 126 2.512745 TGACACAAAGCACCGCGT 60.513 55.556 4.92 0.00 0.00 6.01
126 127 2.047151 AAGTGACACAAAGCACCGCG 62.047 55.000 8.59 0.00 35.67 6.46
127 128 0.100503 AAAGTGACACAAAGCACCGC 59.899 50.000 8.59 0.00 35.67 5.68
128 129 2.032030 CCTAAAGTGACACAAAGCACCG 60.032 50.000 8.59 0.00 35.67 4.94
129 130 3.211045 TCCTAAAGTGACACAAAGCACC 58.789 45.455 8.59 0.00 35.67 5.01
130 131 6.546395 CATATCCTAAAGTGACACAAAGCAC 58.454 40.000 8.59 0.00 35.30 4.40
131 132 5.123820 GCATATCCTAAAGTGACACAAAGCA 59.876 40.000 8.59 0.00 0.00 3.91
132 133 5.355350 AGCATATCCTAAAGTGACACAAAGC 59.645 40.000 8.59 0.00 0.00 3.51
133 134 6.820656 AGAGCATATCCTAAAGTGACACAAAG 59.179 38.462 8.59 1.84 0.00 2.77
134 135 6.711277 AGAGCATATCCTAAAGTGACACAAA 58.289 36.000 8.59 0.00 0.00 2.83
135 136 6.299805 AGAGCATATCCTAAAGTGACACAA 57.700 37.500 8.59 0.00 0.00 3.33
136 137 5.939764 AGAGCATATCCTAAAGTGACACA 57.060 39.130 8.59 0.00 0.00 3.72
137 138 7.617041 AAAAGAGCATATCCTAAAGTGACAC 57.383 36.000 0.00 0.00 0.00 3.67
138 139 7.491372 CGTAAAAGAGCATATCCTAAAGTGACA 59.509 37.037 0.00 0.00 0.00 3.58
139 140 7.491696 ACGTAAAAGAGCATATCCTAAAGTGAC 59.508 37.037 0.00 0.00 0.00 3.67
140 141 7.553334 ACGTAAAAGAGCATATCCTAAAGTGA 58.447 34.615 0.00 0.00 0.00 3.41
141 142 7.772332 ACGTAAAAGAGCATATCCTAAAGTG 57.228 36.000 0.00 0.00 0.00 3.16
142 143 7.822822 ACAACGTAAAAGAGCATATCCTAAAGT 59.177 33.333 0.00 0.00 0.00 2.66
143 144 8.197988 ACAACGTAAAAGAGCATATCCTAAAG 57.802 34.615 0.00 0.00 0.00 1.85
144 145 9.309516 CTACAACGTAAAAGAGCATATCCTAAA 57.690 33.333 0.00 0.00 0.00 1.85
145 146 7.437267 GCTACAACGTAAAAGAGCATATCCTAA 59.563 37.037 0.00 0.00 0.00 2.69
146 147 6.921857 GCTACAACGTAAAAGAGCATATCCTA 59.078 38.462 0.00 0.00 0.00 2.94
147 148 5.753921 GCTACAACGTAAAAGAGCATATCCT 59.246 40.000 0.00 0.00 0.00 3.24
148 149 5.753921 AGCTACAACGTAAAAGAGCATATCC 59.246 40.000 9.57 0.00 32.28 2.59
149 150 6.830114 AGCTACAACGTAAAAGAGCATATC 57.170 37.500 9.57 0.00 32.28 1.63
150 151 6.456988 GCAAGCTACAACGTAAAAGAGCATAT 60.457 38.462 9.57 0.00 32.28 1.78
151 152 5.163893 GCAAGCTACAACGTAAAAGAGCATA 60.164 40.000 9.57 0.00 32.28 3.14
152 153 4.378459 GCAAGCTACAACGTAAAAGAGCAT 60.378 41.667 9.57 0.00 32.28 3.79
153 154 3.059188 GCAAGCTACAACGTAAAAGAGCA 60.059 43.478 9.57 0.00 32.28 4.26
154 155 3.186613 AGCAAGCTACAACGTAAAAGAGC 59.813 43.478 0.00 0.00 0.00 4.09
155 156 4.433022 CGAGCAAGCTACAACGTAAAAGAG 60.433 45.833 0.00 0.00 0.00 2.85
156 157 3.427528 CGAGCAAGCTACAACGTAAAAGA 59.572 43.478 0.00 0.00 0.00 2.52
157 158 3.427528 TCGAGCAAGCTACAACGTAAAAG 59.572 43.478 0.00 0.00 0.00 2.27
158 159 3.182972 GTCGAGCAAGCTACAACGTAAAA 59.817 43.478 0.00 0.00 0.00 1.52
159 160 2.727798 GTCGAGCAAGCTACAACGTAAA 59.272 45.455 0.00 0.00 0.00 2.01
160 161 2.322161 GTCGAGCAAGCTACAACGTAA 58.678 47.619 0.00 0.00 0.00 3.18
161 162 1.726892 CGTCGAGCAAGCTACAACGTA 60.727 52.381 12.40 0.00 0.00 3.57
162 163 1.002250 CGTCGAGCAAGCTACAACGT 61.002 55.000 12.40 0.00 0.00 3.99
163 164 1.674611 CCGTCGAGCAAGCTACAACG 61.675 60.000 13.22 13.22 0.00 4.10
164 165 0.666577 ACCGTCGAGCAAGCTACAAC 60.667 55.000 0.00 0.00 0.00 3.32
165 166 0.666274 CACCGTCGAGCAAGCTACAA 60.666 55.000 0.00 0.00 0.00 2.41
166 167 1.080772 CACCGTCGAGCAAGCTACA 60.081 57.895 0.00 0.00 0.00 2.74
167 168 0.666577 AACACCGTCGAGCAAGCTAC 60.667 55.000 0.00 0.00 0.00 3.58
168 169 0.032952 AAACACCGTCGAGCAAGCTA 59.967 50.000 0.00 0.00 0.00 3.32
169 170 0.814010 AAAACACCGTCGAGCAAGCT 60.814 50.000 0.00 0.00 0.00 3.74
170 171 0.028902 AAAAACACCGTCGAGCAAGC 59.971 50.000 0.00 0.00 0.00 4.01
186 187 5.386060 ACCAACCAAACCAAAAAGGAAAAA 58.614 33.333 0.00 0.00 41.22 1.94
187 188 4.986783 ACCAACCAAACCAAAAAGGAAAA 58.013 34.783 0.00 0.00 41.22 2.29
188 189 4.642466 ACCAACCAAACCAAAAAGGAAA 57.358 36.364 0.00 0.00 41.22 3.13
189 190 4.202472 ACAACCAACCAAACCAAAAAGGAA 60.202 37.500 0.00 0.00 41.22 3.36
190 191 3.328050 ACAACCAACCAAACCAAAAAGGA 59.672 39.130 0.00 0.00 41.22 3.36
191 192 3.438434 CACAACCAACCAAACCAAAAAGG 59.562 43.478 0.00 0.00 45.67 3.11
192 193 4.319177 TCACAACCAACCAAACCAAAAAG 58.681 39.130 0.00 0.00 0.00 2.27
193 194 4.351874 TCACAACCAACCAAACCAAAAA 57.648 36.364 0.00 0.00 0.00 1.94
194 195 4.256920 CATCACAACCAACCAAACCAAAA 58.743 39.130 0.00 0.00 0.00 2.44
195 196 3.261897 ACATCACAACCAACCAAACCAAA 59.738 39.130 0.00 0.00 0.00 3.28
196 197 2.834549 ACATCACAACCAACCAAACCAA 59.165 40.909 0.00 0.00 0.00 3.67
197 198 2.461695 ACATCACAACCAACCAAACCA 58.538 42.857 0.00 0.00 0.00 3.67
198 199 3.118956 TGAACATCACAACCAACCAAACC 60.119 43.478 0.00 0.00 0.00 3.27
199 200 4.116747 TGAACATCACAACCAACCAAAC 57.883 40.909 0.00 0.00 0.00 2.93
200 201 4.691175 CATGAACATCACAACCAACCAAA 58.309 39.130 0.00 0.00 0.00 3.28
201 202 3.492309 GCATGAACATCACAACCAACCAA 60.492 43.478 0.00 0.00 0.00 3.67
202 203 2.035704 GCATGAACATCACAACCAACCA 59.964 45.455 0.00 0.00 0.00 3.67
203 204 2.297033 AGCATGAACATCACAACCAACC 59.703 45.455 0.00 0.00 0.00 3.77
204 205 3.648339 AGCATGAACATCACAACCAAC 57.352 42.857 0.00 0.00 0.00 3.77
205 206 4.023279 GTGTAGCATGAACATCACAACCAA 60.023 41.667 0.00 0.00 0.00 3.67
206 207 3.501828 GTGTAGCATGAACATCACAACCA 59.498 43.478 0.00 0.00 0.00 3.67
207 208 3.753272 AGTGTAGCATGAACATCACAACC 59.247 43.478 0.00 0.00 0.00 3.77
208 209 4.434725 CGAGTGTAGCATGAACATCACAAC 60.435 45.833 0.00 0.00 0.00 3.32
209 210 3.679502 CGAGTGTAGCATGAACATCACAA 59.320 43.478 0.00 0.00 0.00 3.33
210 211 3.253230 CGAGTGTAGCATGAACATCACA 58.747 45.455 0.00 0.00 0.00 3.58
211 212 3.254060 ACGAGTGTAGCATGAACATCAC 58.746 45.455 0.00 0.00 0.00 3.06
212 213 3.592898 ACGAGTGTAGCATGAACATCA 57.407 42.857 0.00 0.00 0.00 3.07
213 214 5.103000 AGTTACGAGTGTAGCATGAACATC 58.897 41.667 0.00 0.00 34.54 3.06
214 215 5.073311 AGTTACGAGTGTAGCATGAACAT 57.927 39.130 0.00 0.00 34.54 2.71
215 216 4.482386 GAGTTACGAGTGTAGCATGAACA 58.518 43.478 0.00 0.00 34.54 3.18
216 217 3.542704 CGAGTTACGAGTGTAGCATGAAC 59.457 47.826 0.00 0.00 45.77 3.18
217 218 3.189910 ACGAGTTACGAGTGTAGCATGAA 59.810 43.478 0.00 0.00 45.77 2.57
218 219 2.745821 ACGAGTTACGAGTGTAGCATGA 59.254 45.455 0.00 0.00 45.77 3.07
219 220 3.132629 ACGAGTTACGAGTGTAGCATG 57.867 47.619 0.00 0.00 45.77 4.06
220 221 3.057736 ACAACGAGTTACGAGTGTAGCAT 60.058 43.478 0.00 0.00 45.77 3.79
221 222 2.291465 ACAACGAGTTACGAGTGTAGCA 59.709 45.455 0.00 0.00 45.77 3.49
222 223 2.926165 ACAACGAGTTACGAGTGTAGC 58.074 47.619 0.00 0.00 45.77 3.58
223 224 4.374707 GCAAACAACGAGTTACGAGTGTAG 60.375 45.833 0.00 0.00 45.77 2.74
224 225 3.486841 GCAAACAACGAGTTACGAGTGTA 59.513 43.478 0.00 0.00 45.77 2.90
225 226 2.283351 GCAAACAACGAGTTACGAGTGT 59.717 45.455 0.00 0.00 45.77 3.55
226 227 2.283086 TGCAAACAACGAGTTACGAGTG 59.717 45.455 0.00 0.00 45.77 3.51
227 228 2.542597 TGCAAACAACGAGTTACGAGT 58.457 42.857 0.00 0.00 45.77 4.18
228 229 3.718036 CGATGCAAACAACGAGTTACGAG 60.718 47.826 0.00 0.00 44.07 4.18
229 230 2.154198 CGATGCAAACAACGAGTTACGA 59.846 45.455 0.00 0.00 44.07 3.43
230 231 2.154198 TCGATGCAAACAACGAGTTACG 59.846 45.455 0.00 0.00 44.84 3.18
231 232 3.781341 TCGATGCAAACAACGAGTTAC 57.219 42.857 0.00 0.00 44.84 2.50
237 238 2.880822 ATCACTCGATGCAAACAACG 57.119 45.000 0.00 0.00 42.84 4.10
238 239 3.674423 GCTATCACTCGATGCAAACAAC 58.326 45.455 0.00 0.00 32.73 3.32
239 240 2.348362 CGCTATCACTCGATGCAAACAA 59.652 45.455 0.00 0.00 32.73 2.83
240 241 1.926510 CGCTATCACTCGATGCAAACA 59.073 47.619 0.00 0.00 32.73 2.83
241 242 1.332377 GCGCTATCACTCGATGCAAAC 60.332 52.381 0.00 0.00 32.73 2.93
242 243 0.930310 GCGCTATCACTCGATGCAAA 59.070 50.000 0.00 0.00 32.73 3.68
243 244 0.103026 AGCGCTATCACTCGATGCAA 59.897 50.000 8.99 0.00 32.73 4.08
244 245 0.103026 AAGCGCTATCACTCGATGCA 59.897 50.000 12.05 0.00 32.73 3.96
245 246 1.212616 AAAGCGCTATCACTCGATGC 58.787 50.000 12.05 0.00 32.73 3.91
246 247 2.604914 ACAAAAGCGCTATCACTCGATG 59.395 45.455 12.05 2.12 32.73 3.84
247 248 2.893637 ACAAAAGCGCTATCACTCGAT 58.106 42.857 12.05 0.00 35.50 3.59
248 249 2.363788 ACAAAAGCGCTATCACTCGA 57.636 45.000 12.05 0.00 0.00 4.04
249 250 4.778842 ATTACAAAAGCGCTATCACTCG 57.221 40.909 12.05 0.00 0.00 4.18
250 251 6.106877 TCAATTACAAAAGCGCTATCACTC 57.893 37.500 12.05 0.00 0.00 3.51
251 252 6.494893 TTCAATTACAAAAGCGCTATCACT 57.505 33.333 12.05 0.00 0.00 3.41
252 253 7.740519 ATTTCAATTACAAAAGCGCTATCAC 57.259 32.000 12.05 0.00 0.00 3.06
253 254 8.755696 AAATTTCAATTACAAAAGCGCTATCA 57.244 26.923 12.05 0.00 0.00 2.15
254 255 9.464248 CAAAATTTCAATTACAAAAGCGCTATC 57.536 29.630 12.05 0.00 0.00 2.08
255 256 8.987890 ACAAAATTTCAATTACAAAAGCGCTAT 58.012 25.926 12.05 0.00 0.00 2.97
256 257 8.359060 ACAAAATTTCAATTACAAAAGCGCTA 57.641 26.923 12.05 0.00 0.00 4.26
257 258 7.224557 AGACAAAATTTCAATTACAAAAGCGCT 59.775 29.630 2.64 2.64 0.00 5.92
258 259 7.344441 AGACAAAATTTCAATTACAAAAGCGC 58.656 30.769 0.00 0.00 0.00 5.92
259 260 9.356929 GAAGACAAAATTTCAATTACAAAAGCG 57.643 29.630 0.00 0.00 0.00 4.68
309 310 3.472652 GGTTTTCTTTCCGGCCATTTTT 58.527 40.909 2.24 0.00 0.00 1.94
310 311 2.547007 CGGTTTTCTTTCCGGCCATTTT 60.547 45.455 2.24 0.00 42.61 1.82
311 312 1.000394 CGGTTTTCTTTCCGGCCATTT 60.000 47.619 2.24 0.00 42.61 2.32
312 313 0.601057 CGGTTTTCTTTCCGGCCATT 59.399 50.000 2.24 0.00 42.61 3.16
313 314 0.250989 TCGGTTTTCTTTCCGGCCAT 60.251 50.000 2.24 0.00 45.79 4.40
314 315 0.887387 CTCGGTTTTCTTTCCGGCCA 60.887 55.000 2.24 0.00 45.79 5.36
315 316 0.887836 ACTCGGTTTTCTTTCCGGCC 60.888 55.000 0.00 0.00 45.79 6.13
316 317 1.462283 GTACTCGGTTTTCTTTCCGGC 59.538 52.381 0.00 0.00 45.79 6.13
317 318 2.758009 TGTACTCGGTTTTCTTTCCGG 58.242 47.619 0.00 0.00 45.79 5.14
318 319 4.508861 TCTTTGTACTCGGTTTTCTTTCCG 59.491 41.667 0.00 0.00 46.93 4.30
319 320 5.996669 TCTTTGTACTCGGTTTTCTTTCC 57.003 39.130 0.00 0.00 0.00 3.13
320 321 7.590322 GGAAATCTTTGTACTCGGTTTTCTTTC 59.410 37.037 0.00 0.00 0.00 2.62
387 388 0.034670 AGAGAATGCTGGTTGGAGGC 60.035 55.000 0.00 0.00 0.00 4.70
447 462 2.745037 GCGTGGGTGAGTGGGTTA 59.255 61.111 0.00 0.00 0.00 2.85
583 598 1.239347 GGCGGAGGAATTAATGGAGC 58.761 55.000 0.00 0.00 0.00 4.70
1084 1102 0.535102 CTCCGGTTGAACTTGCCTGT 60.535 55.000 0.00 0.00 0.00 4.00
1270 1289 2.788786 GCCATTAAAATCAACGCCATCG 59.211 45.455 0.00 0.00 42.43 3.84
1417 1436 2.103263 GCTCGGGATGTCTACAAAGGAT 59.897 50.000 0.00 0.00 0.00 3.24
1418 1437 1.480954 GCTCGGGATGTCTACAAAGGA 59.519 52.381 0.00 0.00 0.00 3.36
1419 1438 1.207089 TGCTCGGGATGTCTACAAAGG 59.793 52.381 0.00 0.00 0.00 3.11
1420 1439 2.672961 TGCTCGGGATGTCTACAAAG 57.327 50.000 0.00 0.00 0.00 2.77
1421 1440 2.301870 AGTTGCTCGGGATGTCTACAAA 59.698 45.455 0.00 0.00 0.00 2.83
1422 1441 1.899814 AGTTGCTCGGGATGTCTACAA 59.100 47.619 0.00 0.00 0.00 2.41
1423 1442 1.204704 CAGTTGCTCGGGATGTCTACA 59.795 52.381 0.00 0.00 0.00 2.74
1424 1443 1.476891 TCAGTTGCTCGGGATGTCTAC 59.523 52.381 0.00 0.00 0.00 2.59
1433 1452 2.661566 CGCACACTCAGTTGCTCGG 61.662 63.158 9.40 0.00 0.00 4.63
1434 1453 1.951130 ACGCACACTCAGTTGCTCG 60.951 57.895 9.40 0.00 0.00 5.03
1533 1552 2.888863 GTCCTCCTGCTCGGACAG 59.111 66.667 3.72 0.00 46.98 3.51
1583 1602 1.002366 CCTCAAATTCGCTGTCTCGG 58.998 55.000 0.00 0.00 0.00 4.63
1620 1639 1.153289 CTGAGGGCAACTGGATCCG 60.153 63.158 7.39 4.62 0.00 4.18
1728 1749 5.557891 AGCAAGATTTATCAACAGCTCAC 57.442 39.130 0.00 0.00 0.00 3.51
1741 1762 3.829026 GGGGAGAAGACAAAGCAAGATTT 59.171 43.478 0.00 0.00 0.00 2.17
1773 1795 1.228644 TTCCACTTGGCTGCAGCAT 60.229 52.632 37.63 18.52 44.36 3.79
1826 1848 0.034863 GCTCGGGGTGGTAATTGGAA 60.035 55.000 0.00 0.00 0.00 3.53
1829 1851 0.035439 AGTGCTCGGGGTGGTAATTG 60.035 55.000 0.00 0.00 0.00 2.32
1859 1881 0.322975 ATGAGCACTCACCACTCCAC 59.677 55.000 1.71 0.00 43.11 4.02
1932 1956 7.095695 ACATGCTGTAAAACAAACTAACTGT 57.904 32.000 0.00 0.00 0.00 3.55
1962 2139 7.148507 GCCTCTGATATGACATTATAACAGCAC 60.149 40.741 0.00 0.00 34.96 4.40
1977 2154 0.322648 TGCCGGATGCCTCTGATATG 59.677 55.000 5.05 0.00 40.16 1.78
1992 2176 4.920340 TGTTACATTAAAAAGCACATGCCG 59.080 37.500 0.00 0.00 43.38 5.69
2036 2225 6.823689 AGTCGTGCTTTAGATAACCAATGAAT 59.176 34.615 0.00 0.00 0.00 2.57
2053 2242 4.259356 TCACTACTACACATAGTCGTGCT 58.741 43.478 12.06 0.00 46.93 4.40
2054 2243 4.094590 ACTCACTACTACACATAGTCGTGC 59.905 45.833 12.06 0.00 46.93 5.34
2092 2289 1.882623 GGCAGGGCTTATCATAGCAAC 59.117 52.381 0.00 0.00 43.02 4.17
2117 2314 6.126568 TCCGGTTCTTGTTTTAAGTTCAAG 57.873 37.500 0.00 8.87 39.59 3.02
2156 2354 1.121240 CGAGTAGCGATTAACTGGCG 58.879 55.000 0.00 0.00 44.57 5.69
2183 2401 5.513094 CGAATAGGGCCTTTCCATATCAAGA 60.513 44.000 13.45 0.00 40.68 3.02
2485 2714 6.593978 GCTACTATGCACATTAATGTAGCAC 58.406 40.000 30.48 20.21 45.92 4.40
2551 2780 5.415961 ACTGGGGCCATATCTATATATCCC 58.584 45.833 4.39 8.92 34.91 3.85
2755 3067 2.882761 GCATCATGGTCATACAGTGCAT 59.117 45.455 0.00 0.00 31.59 3.96
2757 3069 1.605710 GGCATCATGGTCATACAGTGC 59.394 52.381 0.00 0.00 0.00 4.40
2930 3244 5.751243 ACAAGTCAGATGTTGGTTGTAAC 57.249 39.130 0.00 0.00 34.55 2.50
2937 3251 8.954950 ATCTAATCTTACAAGTCAGATGTTGG 57.045 34.615 0.00 0.00 29.78 3.77
3014 3328 7.651027 AAATGAAGACATAATTCCTTCCCTG 57.349 36.000 0.00 0.00 36.41 4.45
3015 3329 9.942526 AATAAATGAAGACATAATTCCTTCCCT 57.057 29.630 0.00 0.00 36.41 4.20
3212 3528 9.807921 AAGGAAAAGGAAAAGAAGACACATATA 57.192 29.630 0.00 0.00 0.00 0.86
3229 3545 9.933723 ATCATATGAACAAGAAAAAGGAAAAGG 57.066 29.630 9.99 0.00 0.00 3.11
3265 3581 3.678056 ACACGAATAGTTTGGCTCAGA 57.322 42.857 0.00 0.00 0.00 3.27
3343 3660 0.606401 AGTCCAGTGAACCCAATGCG 60.606 55.000 0.00 0.00 37.08 4.73
3367 3684 3.547214 CGAGTGCTCGTCTATCTTCCTTC 60.547 52.174 12.87 0.00 46.99 3.46
3385 3702 3.503827 TCACGTGATTTGATAGCGAGT 57.496 42.857 15.76 0.00 0.00 4.18
3391 3708 4.214545 GGTGGTGTTTCACGTGATTTGATA 59.785 41.667 20.80 0.00 38.46 2.15
3451 3768 4.798882 AGTGTGTTGGGAATTTTACCTCA 58.201 39.130 0.00 0.00 30.18 3.86
3465 3782 8.964420 TTTAAGAAGTTCTTCAAAGTGTGTTG 57.036 30.769 21.25 0.00 37.89 3.33
3475 3792 4.939439 GGGGCGTATTTAAGAAGTTCTTCA 59.061 41.667 21.25 8.43 37.89 3.02
3476 3793 4.939439 TGGGGCGTATTTAAGAAGTTCTTC 59.061 41.667 21.25 6.32 37.89 2.87
3482 3799 4.881850 ACAGAATGGGGCGTATTTAAGAAG 59.118 41.667 0.00 0.00 43.62 2.85
3483 3800 4.850680 ACAGAATGGGGCGTATTTAAGAA 58.149 39.130 0.00 0.00 43.62 2.52
3484 3801 4.497291 ACAGAATGGGGCGTATTTAAGA 57.503 40.909 0.00 0.00 43.62 2.10
3576 3893 1.694150 TCAGAGCCAGTTAGCAGTTGT 59.306 47.619 0.00 0.00 34.23 3.32
3585 3902 1.899142 GTCTCCTCTTCAGAGCCAGTT 59.101 52.381 0.00 0.00 40.75 3.16
3633 3953 1.597854 TGCCTTGACAGCAGGTTCG 60.598 57.895 0.00 0.00 34.69 3.95
3693 4013 3.691609 CAGGCTTTGGAAGGTCAGTATTC 59.308 47.826 0.00 0.00 0.00 1.75
3720 4043 3.627577 TGTTTTCTGCAACTTCTGACTCC 59.372 43.478 0.00 0.00 0.00 3.85
3746 4069 0.033503 TACATCGGACTGAGCTCCCA 60.034 55.000 12.15 0.00 0.00 4.37
3747 4070 1.112113 TTACATCGGACTGAGCTCCC 58.888 55.000 12.15 4.18 0.00 4.30
3748 4071 2.288518 GGATTACATCGGACTGAGCTCC 60.289 54.545 12.15 0.00 0.00 4.70
3777 4100 1.876416 GCAACAACTCTTGGACCGCTA 60.876 52.381 0.00 0.00 34.12 4.26
3786 4109 2.024918 CGGTGCTGCAACAACTCTT 58.975 52.632 18.95 0.00 0.00 2.85
3813 4136 1.608025 GGCTTCTGGATTGTGACGACA 60.608 52.381 0.00 0.00 0.00 4.35
3924 4247 1.683011 CCCTCAATGTAACCAGCCAGG 60.683 57.143 0.00 0.00 45.67 4.45
3972 4296 2.763448 AGGCGCTCCTCTTATATCATCC 59.237 50.000 7.64 0.00 38.72 3.51
4008 4332 2.701423 TGGTAAGGATAACATAGCCGCA 59.299 45.455 0.00 0.00 39.78 5.69
4189 4516 2.232208 GGCCCTTTCATCCAGAACAAAG 59.768 50.000 0.00 0.00 35.56 2.77
4267 4594 9.986833 TTATTAATGAACGAATCACTTGTCATG 57.013 29.630 0.00 0.00 41.93 3.07
4315 4660 1.531883 CGCTTTTCCTAATTCTGCGGC 60.532 52.381 0.00 0.00 38.54 6.53
4373 4718 1.376424 CTGTCATCTGCCCAGCGTT 60.376 57.895 0.00 0.00 0.00 4.84
4417 4763 1.398390 GTTCGCTTACCAGGCATCAAG 59.602 52.381 0.00 0.00 0.00 3.02
4427 4773 0.237498 GTGCCACAAGTTCGCTTACC 59.763 55.000 0.00 0.00 35.31 2.85
4430 4776 1.447317 CCTGTGCCACAAGTTCGCTT 61.447 55.000 0.00 0.00 38.09 4.68
4433 4779 1.648720 CACCTGTGCCACAAGTTCG 59.351 57.895 0.00 0.00 0.00 3.95
4437 4783 0.754957 TTTCCCACCTGTGCCACAAG 60.755 55.000 0.00 0.00 0.00 3.16
4438 4784 0.324738 TTTTCCCACCTGTGCCACAA 60.325 50.000 0.00 0.00 0.00 3.33
4440 4786 0.755327 ACTTTTCCCACCTGTGCCAC 60.755 55.000 0.00 0.00 0.00 5.01
4441 4787 0.847373 TACTTTTCCCACCTGTGCCA 59.153 50.000 0.00 0.00 0.00 4.92
4442 4788 1.989706 TTACTTTTCCCACCTGTGCC 58.010 50.000 0.00 0.00 0.00 5.01
4448 5515 1.890489 ACGGCAATTACTTTTCCCACC 59.110 47.619 0.00 0.00 0.00 4.61
4466 5533 2.224066 CCCCTGCCAGATAAGTTCTACG 60.224 54.545 0.00 0.00 31.77 3.51
4467 5534 3.039011 TCCCCTGCCAGATAAGTTCTAC 58.961 50.000 0.00 0.00 31.77 2.59
4473 5540 2.239654 TGAACTTCCCCTGCCAGATAAG 59.760 50.000 0.00 0.00 0.00 1.73
4491 5559 4.651045 TCTGCTTGATCTAGCCAGTATGAA 59.349 41.667 23.51 4.37 40.49 2.57
4493 5561 4.597404 TCTGCTTGATCTAGCCAGTATG 57.403 45.455 23.51 9.04 40.49 2.39
4494 5562 4.898265 TCTTCTGCTTGATCTAGCCAGTAT 59.102 41.667 23.51 0.00 40.49 2.12
4495 5563 4.281657 TCTTCTGCTTGATCTAGCCAGTA 58.718 43.478 23.51 14.11 40.49 2.74
4496 5564 3.102972 TCTTCTGCTTGATCTAGCCAGT 58.897 45.455 23.51 0.00 40.49 4.00
4497 5565 3.815856 TCTTCTGCTTGATCTAGCCAG 57.184 47.619 23.51 19.47 40.49 4.85
4498 5566 3.453717 ACATCTTCTGCTTGATCTAGCCA 59.546 43.478 23.51 12.32 40.49 4.75
4499 5567 3.808726 CACATCTTCTGCTTGATCTAGCC 59.191 47.826 23.51 8.72 40.49 3.93
4501 5569 5.519566 GTCACACATCTTCTGCTTGATCTAG 59.480 44.000 0.00 0.00 0.00 2.43
4513 5583 5.360591 CCTGTAATAGGGTCACACATCTTC 58.639 45.833 0.00 0.00 43.33 2.87
4529 5599 5.687166 TCCTTCACCGTATTTCCTGTAAT 57.313 39.130 0.00 0.00 0.00 1.89
4536 5606 6.537301 TCATGTATGTTCCTTCACCGTATTTC 59.463 38.462 0.00 0.00 0.00 2.17
4543 5613 6.992123 TGATGTATCATGTATGTTCCTTCACC 59.008 38.462 0.00 0.00 0.00 4.02
4558 5628 3.198068 GTCAGGCAACGTGATGTATCAT 58.802 45.455 0.00 0.00 46.39 2.45
4559 5629 2.616960 GTCAGGCAACGTGATGTATCA 58.383 47.619 0.00 0.00 46.39 2.15
4560 5630 1.588404 CGTCAGGCAACGTGATGTATC 59.412 52.381 0.00 0.00 46.39 2.24
4562 5632 0.599060 TCGTCAGGCAACGTGATGTA 59.401 50.000 11.38 0.00 43.08 2.29
4563 5633 0.667487 CTCGTCAGGCAACGTGATGT 60.667 55.000 11.38 0.00 43.08 3.06
4564 5634 0.667487 ACTCGTCAGGCAACGTGATG 60.667 55.000 17.36 4.78 43.08 3.07
4565 5635 0.388649 GACTCGTCAGGCAACGTGAT 60.389 55.000 17.36 5.76 43.08 3.06
4579 5649 3.059325 CAGTTTTGAGCCTCAAAGACTCG 60.059 47.826 18.50 14.26 45.77 4.18
4580 5650 3.251972 CCAGTTTTGAGCCTCAAAGACTC 59.748 47.826 18.50 11.26 45.77 3.36
4582 5652 2.287849 GCCAGTTTTGAGCCTCAAAGAC 60.288 50.000 18.50 17.84 45.77 3.01
4583 5653 1.956477 GCCAGTTTTGAGCCTCAAAGA 59.044 47.619 18.50 8.55 45.77 2.52
4591 7524 3.974222 AAAGCAGCCAGTTTTGAGC 57.026 47.368 0.00 0.00 0.00 4.26
4604 7537 2.515757 TCACCGCACAGCAAAGCA 60.516 55.556 0.00 0.00 0.00 3.91
4653 7586 1.335872 GGTTTTGTGCGGATCCAACTG 60.336 52.381 13.41 0.00 0.00 3.16
4667 7623 3.827722 TGGGGTGAGACTTAAGGTTTTG 58.172 45.455 7.53 0.00 0.00 2.44
4675 7631 6.381498 TTGTTTGATATGGGGTGAGACTTA 57.619 37.500 0.00 0.00 0.00 2.24
4676 7632 4.927267 TGTTTGATATGGGGTGAGACTT 57.073 40.909 0.00 0.00 0.00 3.01
4707 7663 0.624500 TTAGGGCCCTCTGCTTGGAT 60.625 55.000 32.80 1.90 40.92 3.41
4719 7675 2.734670 GACGTTGTTTTTGTTAGGGCC 58.265 47.619 0.00 0.00 0.00 5.80
4721 7677 3.310501 AGTCGACGTTGTTTTTGTTAGGG 59.689 43.478 10.46 0.00 0.00 3.53
4722 7678 4.033129 TGAGTCGACGTTGTTTTTGTTAGG 59.967 41.667 10.46 0.00 0.00 2.69
4754 7726 3.124466 TGTTCATCGTTTGCGGTAAGATG 59.876 43.478 2.90 2.90 39.81 2.90
4775 7747 4.742167 CGGAACAGATGCACTACTAGAATG 59.258 45.833 0.00 0.00 0.00 2.67
4878 7850 6.736794 GCATTTTTGTTGTGATCTTCTGGAGT 60.737 38.462 0.00 0.00 0.00 3.85
4915 7887 1.472082 CCATGCCGTGCACAAAATCTA 59.528 47.619 18.64 0.00 43.04 1.98
4919 7891 1.175347 TAGCCATGCCGTGCACAAAA 61.175 50.000 18.64 0.71 43.04 2.44
4920 7892 1.175347 TTAGCCATGCCGTGCACAAA 61.175 50.000 18.64 1.12 43.04 2.83
5011 7983 3.774528 ATGAGCGCGAAGGAGGCA 61.775 61.111 12.10 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.