Multiple sequence alignment - TraesCS4A01G121300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G121300 chr4A 100.000 9037 0 0 1 9037 149657750 149648714 0.000000e+00 16689.0
1 TraesCS4A01G121300 chr4A 77.778 234 42 9 8655 8879 29086887 29087119 1.580000e-27 135.0
2 TraesCS4A01G121300 chr4A 95.238 42 2 0 396 437 142462582 142462541 5.860000e-07 67.6
3 TraesCS4A01G121300 chr4A 91.489 47 3 1 7733 7778 149649967 149649921 7.570000e-06 63.9
4 TraesCS4A01G121300 chr4A 91.489 47 3 1 7784 7830 149650018 149649973 7.570000e-06 63.9
5 TraesCS4A01G121300 chr4D 97.636 6175 110 17 2871 9037 322852091 322858237 0.000000e+00 10562.0
6 TraesCS4A01G121300 chr4D 94.788 2552 79 23 351 2884 322849348 322851863 0.000000e+00 3927.0
7 TraesCS4A01G121300 chr4D 93.617 47 2 1 7784 7830 322856949 322856994 1.630000e-07 69.4
8 TraesCS4A01G121300 chr4D 100.000 34 0 0 349 382 503834923 503834956 7.570000e-06 63.9
9 TraesCS4A01G121300 chr4B 98.107 2641 42 5 1924 4559 398240056 398237419 0.000000e+00 4593.0
10 TraesCS4A01G121300 chr4B 97.493 2074 38 6 6747 8810 398235382 398233313 0.000000e+00 3530.0
11 TraesCS4A01G121300 chr4B 97.635 1945 28 7 4616 6542 398237419 398235475 0.000000e+00 3321.0
12 TraesCS4A01G121300 chr4B 93.869 1370 58 15 566 1925 398241532 398240179 0.000000e+00 2041.0
13 TraesCS4A01G121300 chr4B 88.608 237 21 3 350 586 398249504 398249274 5.340000e-72 283.0
14 TraesCS4A01G121300 chr4B 94.309 123 3 3 6637 6756 398235452 398235331 1.550000e-42 185.0
15 TraesCS4A01G121300 chr4B 95.745 47 1 1 7784 7830 398234394 398234349 3.500000e-09 75.0
16 TraesCS4A01G121300 chr4B 84.375 64 10 0 401 464 407731774 407731837 7.570000e-06 63.9
17 TraesCS4A01G121300 chr6B 95.784 1257 52 1 3708 4964 159542037 159543292 0.000000e+00 2026.0
18 TraesCS4A01G121300 chr3B 90.214 327 32 0 9 335 754420150 754419824 2.330000e-115 427.0
19 TraesCS4A01G121300 chr3B 88.073 327 37 2 9 335 489366893 489367217 3.960000e-103 387.0
20 TraesCS4A01G121300 chr2D 89.552 335 35 0 9 343 516421368 516421034 8.390000e-115 425.0
21 TraesCS4A01G121300 chr3A 89.634 328 34 0 9 336 701874780 701874453 1.400000e-112 418.0
22 TraesCS4A01G121300 chr3A 85.874 269 37 1 12 280 750784267 750784000 1.490000e-72 285.0
23 TraesCS4A01G121300 chr3A 92.647 68 5 0 276 343 750758452 750758385 2.080000e-16 99.0
24 TraesCS4A01G121300 chr3A 92.647 68 5 0 276 343 750774702 750774635 2.080000e-16 99.0
25 TraesCS4A01G121300 chr2A 88.757 338 35 1 9 343 578157143 578156806 2.350000e-110 411.0
26 TraesCS4A01G121300 chr2A 84.225 374 47 10 8163 8530 719283343 719283710 4.010000e-93 353.0
27 TraesCS4A01G121300 chr6A 82.381 210 27 5 5035 5241 270793388 270793186 3.350000e-39 174.0
28 TraesCS4A01G121300 chr7B 83.871 155 20 3 2488 2637 435172241 435172087 9.460000e-30 143.0
29 TraesCS4A01G121300 chr7B 87.719 57 7 0 401 457 460619446 460619390 5.860000e-07 67.6
30 TraesCS4A01G121300 chr7B 100.000 32 0 0 6471 6502 26750903 26750872 9.800000e-05 60.2
31 TraesCS4A01G121300 chr6D 88.889 54 6 0 8672 8725 411804755 411804702 5.860000e-07 67.6
32 TraesCS4A01G121300 chr7D 100.000 32 0 0 6471 6502 79544180 79544149 9.800000e-05 60.2
33 TraesCS4A01G121300 chr7A 100.000 32 0 0 6471 6502 82197550 82197519 9.800000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G121300 chr4A 149648714 149657750 9036 True 16689.000000 16689 100.000 1 9037 1 chr4A.!!$R2 9036
1 TraesCS4A01G121300 chr4D 322849348 322858237 8889 False 4852.800000 10562 95.347 351 9037 3 chr4D.!!$F2 8686
2 TraesCS4A01G121300 chr4B 398233313 398241532 8219 True 2290.833333 4593 96.193 566 8810 6 chr4B.!!$R2 8244
3 TraesCS4A01G121300 chr6B 159542037 159543292 1255 False 2026.000000 2026 95.784 3708 4964 1 chr6B.!!$F1 1256

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
859 868 0.033405 CGACCTCCCTTGGACCTCTA 60.033 60.000 0.00 0.00 0.00 2.43 F
1490 1508 1.065709 GTCCGGGGATTGAGCTTTGTA 60.066 52.381 0.00 0.00 0.00 2.41 F
1667 1685 1.450312 CCAGTCCAGGATCGTTGGC 60.450 63.158 9.44 0.00 35.62 4.52 F
2239 2387 3.903530 AGTGGGGAAATTTGAGTTCCT 57.096 42.857 0.00 0.00 43.55 3.36 F
3491 3883 1.336755 AGGTGATGTGCCACGAAAAAC 59.663 47.619 0.00 0.00 37.91 2.43 F
4021 4413 0.979665 AGAGTCCATGTGGTGACCAG 59.020 55.000 3.58 0.00 32.34 4.00 F
4572 4964 1.468054 GGCAGTGAATTTGACCGATGC 60.468 52.381 0.00 0.00 0.00 3.91 F
5752 6161 2.160219 TGCTGCTGCAGAAAGAATTACG 59.840 45.455 32.30 3.24 45.31 3.18 F
7363 7777 3.743521 AGCTTGTTTGAGTGTGATAGCA 58.256 40.909 0.00 0.00 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2444 2593 1.202245 GCGCTGTGTTGTTCCAGAAAA 60.202 47.619 0.00 0.00 0.00 2.29 R
2649 2798 2.062971 AAAGCATCTCGATTGGCCAT 57.937 45.000 6.09 0.00 0.00 4.40 R
3071 3461 4.319177 AGCACTTCTGTCACAGGTTATTC 58.681 43.478 4.57 0.00 31.51 1.75 R
4021 4413 2.873133 AGCATACTCGAAGGTAGCAC 57.127 50.000 0.00 0.00 0.00 4.40 R
4533 4925 1.302511 GTTGGCATCCACAGGTCGT 60.303 57.895 0.00 0.00 30.78 4.34 R
4922 5314 1.751927 CATCCCCAGAAGGCAGTGC 60.752 63.158 6.55 6.55 0.00 4.40 R
5911 6320 2.638363 ACCCCTAAACCACTCAGACTTC 59.362 50.000 0.00 0.00 0.00 3.01 R
7703 8122 1.075374 ACCTTTGCATAGCAGTTGGGA 59.925 47.619 0.00 0.00 40.61 4.37 R
8856 9284 0.811219 TGCCCGAGAGAAATGCGATG 60.811 55.000 0.00 0.00 0.00 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.934855 ATTCAGCATCATCCTGTTTATATCC 57.065 36.000 0.00 0.00 0.00 2.59
26 27 6.692849 TCAGCATCATCCTGTTTATATCCT 57.307 37.500 0.00 0.00 0.00 3.24
27 28 6.705302 TCAGCATCATCCTGTTTATATCCTC 58.295 40.000 0.00 0.00 0.00 3.71
28 29 6.499699 TCAGCATCATCCTGTTTATATCCTCT 59.500 38.462 0.00 0.00 0.00 3.69
29 30 6.594547 CAGCATCATCCTGTTTATATCCTCTG 59.405 42.308 0.00 0.00 0.00 3.35
30 31 5.353678 GCATCATCCTGTTTATATCCTCTGC 59.646 44.000 0.00 0.00 0.00 4.26
31 32 6.709281 CATCATCCTGTTTATATCCTCTGCT 58.291 40.000 0.00 0.00 0.00 4.24
32 33 7.580302 GCATCATCCTGTTTATATCCTCTGCTA 60.580 40.741 0.00 0.00 0.00 3.49
33 34 7.473735 TCATCCTGTTTATATCCTCTGCTAG 57.526 40.000 0.00 0.00 0.00 3.42
34 35 7.013220 TCATCCTGTTTATATCCTCTGCTAGT 58.987 38.462 0.00 0.00 0.00 2.57
35 36 6.656632 TCCTGTTTATATCCTCTGCTAGTG 57.343 41.667 0.00 0.00 0.00 2.74
36 37 5.011125 TCCTGTTTATATCCTCTGCTAGTGC 59.989 44.000 0.00 0.00 40.20 4.40
37 38 5.011533 CCTGTTTATATCCTCTGCTAGTGCT 59.988 44.000 0.00 0.00 40.48 4.40
38 39 6.090483 TGTTTATATCCTCTGCTAGTGCTC 57.910 41.667 0.00 0.00 40.48 4.26
39 40 5.157781 GTTTATATCCTCTGCTAGTGCTCG 58.842 45.833 0.00 0.00 40.48 5.03
40 41 1.610363 TATCCTCTGCTAGTGCTCGG 58.390 55.000 0.00 0.00 40.48 4.63
41 42 0.106469 ATCCTCTGCTAGTGCTCGGA 60.106 55.000 0.00 0.00 40.48 4.55
42 43 1.032657 TCCTCTGCTAGTGCTCGGAC 61.033 60.000 0.00 0.00 40.48 4.79
43 44 1.034838 CCTCTGCTAGTGCTCGGACT 61.035 60.000 0.00 0.00 40.48 3.85
44 45 0.814457 CTCTGCTAGTGCTCGGACTT 59.186 55.000 0.00 0.00 40.48 3.01
45 46 0.528017 TCTGCTAGTGCTCGGACTTG 59.472 55.000 0.00 0.00 40.48 3.16
46 47 0.244994 CTGCTAGTGCTCGGACTTGT 59.755 55.000 0.00 0.00 40.48 3.16
47 48 0.038251 TGCTAGTGCTCGGACTTGTG 60.038 55.000 0.00 0.00 40.48 3.33
48 49 0.243907 GCTAGTGCTCGGACTTGTGA 59.756 55.000 0.00 0.00 36.03 3.58
49 50 1.134965 GCTAGTGCTCGGACTTGTGAT 60.135 52.381 0.00 0.00 36.03 3.06
50 51 2.803451 CTAGTGCTCGGACTTGTGATC 58.197 52.381 0.00 0.00 0.00 2.92
51 52 0.109086 AGTGCTCGGACTTGTGATCG 60.109 55.000 0.00 0.00 0.00 3.69
52 53 1.078759 GTGCTCGGACTTGTGATCGG 61.079 60.000 0.00 0.00 0.00 4.18
53 54 1.215647 GCTCGGACTTGTGATCGGT 59.784 57.895 0.00 0.00 0.00 4.69
54 55 0.389948 GCTCGGACTTGTGATCGGTT 60.390 55.000 0.00 0.00 0.00 4.44
55 56 1.939838 GCTCGGACTTGTGATCGGTTT 60.940 52.381 0.00 0.00 0.00 3.27
56 57 1.726791 CTCGGACTTGTGATCGGTTTG 59.273 52.381 0.00 0.00 0.00 2.93
57 58 1.069513 TCGGACTTGTGATCGGTTTGT 59.930 47.619 0.00 0.00 0.00 2.83
58 59 1.871039 CGGACTTGTGATCGGTTTGTT 59.129 47.619 0.00 0.00 0.00 2.83
59 60 2.349438 CGGACTTGTGATCGGTTTGTTG 60.349 50.000 0.00 0.00 0.00 3.33
60 61 2.875933 GGACTTGTGATCGGTTTGTTGA 59.124 45.455 0.00 0.00 0.00 3.18
61 62 3.303791 GGACTTGTGATCGGTTTGTTGAC 60.304 47.826 0.00 0.00 0.00 3.18
62 63 3.541632 ACTTGTGATCGGTTTGTTGACT 58.458 40.909 0.00 0.00 0.00 3.41
63 64 3.945285 ACTTGTGATCGGTTTGTTGACTT 59.055 39.130 0.00 0.00 0.00 3.01
64 65 3.961477 TGTGATCGGTTTGTTGACTTG 57.039 42.857 0.00 0.00 0.00 3.16
65 66 2.616376 TGTGATCGGTTTGTTGACTTGG 59.384 45.455 0.00 0.00 0.00 3.61
66 67 1.606668 TGATCGGTTTGTTGACTTGGC 59.393 47.619 0.00 0.00 0.00 4.52
67 68 0.958822 ATCGGTTTGTTGACTTGGCC 59.041 50.000 0.00 0.00 0.00 5.36
68 69 1.008995 CGGTTTGTTGACTTGGCCG 60.009 57.895 0.00 0.00 0.00 6.13
69 70 1.440938 CGGTTTGTTGACTTGGCCGA 61.441 55.000 0.00 0.00 40.04 5.54
70 71 0.958822 GGTTTGTTGACTTGGCCGAT 59.041 50.000 0.00 0.00 0.00 4.18
71 72 2.156098 GGTTTGTTGACTTGGCCGATA 58.844 47.619 0.00 0.00 0.00 2.92
72 73 2.161609 GGTTTGTTGACTTGGCCGATAG 59.838 50.000 0.00 0.00 0.00 2.08
73 74 1.448985 TTGTTGACTTGGCCGATAGC 58.551 50.000 0.00 0.00 42.60 2.97
74 75 0.323302 TGTTGACTTGGCCGATAGCA 59.677 50.000 0.00 0.00 46.50 3.49
75 76 1.065491 TGTTGACTTGGCCGATAGCAT 60.065 47.619 0.00 0.00 46.50 3.79
76 77 1.599542 GTTGACTTGGCCGATAGCATC 59.400 52.381 0.00 0.00 46.50 3.91
86 87 3.274393 GATAGCATCGACACCGCTT 57.726 52.632 5.88 0.00 37.20 4.68
87 88 1.132588 GATAGCATCGACACCGCTTC 58.867 55.000 5.88 1.84 37.20 3.86
88 89 0.459899 ATAGCATCGACACCGCTTCA 59.540 50.000 5.88 0.00 37.20 3.02
89 90 0.179137 TAGCATCGACACCGCTTCAG 60.179 55.000 5.88 0.00 37.20 3.02
90 91 1.446099 GCATCGACACCGCTTCAGA 60.446 57.895 0.00 0.00 35.37 3.27
91 92 1.416813 GCATCGACACCGCTTCAGAG 61.417 60.000 0.00 0.00 35.37 3.35
92 93 0.109086 CATCGACACCGCTTCAGAGT 60.109 55.000 0.00 0.00 35.37 3.24
93 94 1.132453 CATCGACACCGCTTCAGAGTA 59.868 52.381 0.00 0.00 35.37 2.59
94 95 1.241165 TCGACACCGCTTCAGAGTAA 58.759 50.000 0.00 0.00 35.37 2.24
95 96 1.816835 TCGACACCGCTTCAGAGTAAT 59.183 47.619 0.00 0.00 35.37 1.89
96 97 2.159421 TCGACACCGCTTCAGAGTAATC 60.159 50.000 0.00 0.00 35.37 1.75
97 98 2.541556 GACACCGCTTCAGAGTAATCC 58.458 52.381 0.00 0.00 0.00 3.01
98 99 1.899814 ACACCGCTTCAGAGTAATCCA 59.100 47.619 0.00 0.00 0.00 3.41
99 100 2.301870 ACACCGCTTCAGAGTAATCCAA 59.698 45.455 0.00 0.00 0.00 3.53
100 101 2.673368 CACCGCTTCAGAGTAATCCAAC 59.327 50.000 0.00 0.00 0.00 3.77
101 102 2.567615 ACCGCTTCAGAGTAATCCAACT 59.432 45.455 0.00 0.00 0.00 3.16
102 103 3.190874 CCGCTTCAGAGTAATCCAACTC 58.809 50.000 0.00 0.00 45.20 3.01
103 104 3.190874 CGCTTCAGAGTAATCCAACTCC 58.809 50.000 0.54 0.00 45.86 3.85
104 105 3.368427 CGCTTCAGAGTAATCCAACTCCA 60.368 47.826 0.54 0.00 45.86 3.86
105 106 3.935828 GCTTCAGAGTAATCCAACTCCAC 59.064 47.826 0.54 0.00 45.86 4.02
106 107 4.508662 CTTCAGAGTAATCCAACTCCACC 58.491 47.826 0.54 0.00 45.86 4.61
107 108 3.516586 TCAGAGTAATCCAACTCCACCA 58.483 45.455 0.54 0.00 45.86 4.17
108 109 3.907474 TCAGAGTAATCCAACTCCACCAA 59.093 43.478 0.54 0.00 45.86 3.67
109 110 4.536090 TCAGAGTAATCCAACTCCACCAAT 59.464 41.667 0.54 0.00 45.86 3.16
110 111 5.724370 TCAGAGTAATCCAACTCCACCAATA 59.276 40.000 0.54 0.00 45.86 1.90
111 112 6.386927 TCAGAGTAATCCAACTCCACCAATAT 59.613 38.462 0.54 0.00 45.86 1.28
112 113 6.484643 CAGAGTAATCCAACTCCACCAATATG 59.515 42.308 0.54 0.00 45.86 1.78
113 114 5.694995 AGTAATCCAACTCCACCAATATGG 58.305 41.667 0.00 0.00 45.02 2.74
114 115 3.600448 ATCCAACTCCACCAATATGGG 57.400 47.619 0.00 0.00 43.37 4.00
115 116 1.064017 TCCAACTCCACCAATATGGGC 60.064 52.381 0.00 0.00 43.37 5.36
116 117 1.341877 CCAACTCCACCAATATGGGCA 60.342 52.381 0.00 0.00 43.37 5.36
117 118 2.026641 CAACTCCACCAATATGGGCAG 58.973 52.381 0.00 0.00 43.37 4.85
118 119 0.552848 ACTCCACCAATATGGGCAGG 59.447 55.000 0.00 0.00 43.37 4.85
119 120 0.552848 CTCCACCAATATGGGCAGGT 59.447 55.000 7.84 0.00 43.37 4.00
120 121 1.006813 TCCACCAATATGGGCAGGTT 58.993 50.000 7.84 0.00 43.37 3.50
121 122 1.113788 CCACCAATATGGGCAGGTTG 58.886 55.000 0.00 0.00 43.37 3.77
122 123 1.113788 CACCAATATGGGCAGGTTGG 58.886 55.000 0.00 8.14 43.37 3.77
123 124 0.709992 ACCAATATGGGCAGGTTGGT 59.290 50.000 0.00 9.18 46.96 3.67
124 125 2.746279 CCAATATGGGCAGGTTGGTA 57.254 50.000 0.00 0.00 37.05 3.25
125 126 2.306847 CCAATATGGGCAGGTTGGTAC 58.693 52.381 0.00 0.00 37.05 3.34
126 127 1.946768 CAATATGGGCAGGTTGGTACG 59.053 52.381 0.00 0.00 0.00 3.67
127 128 0.472471 ATATGGGCAGGTTGGTACGG 59.528 55.000 0.00 0.00 0.00 4.02
128 129 0.910566 TATGGGCAGGTTGGTACGGT 60.911 55.000 0.00 0.00 0.00 4.83
129 130 0.910566 ATGGGCAGGTTGGTACGGTA 60.911 55.000 0.00 0.00 0.00 4.02
130 131 1.078918 GGGCAGGTTGGTACGGTAC 60.079 63.158 9.82 9.82 0.00 3.34
131 132 1.672898 GGCAGGTTGGTACGGTACA 59.327 57.895 19.14 3.84 0.00 2.90
132 133 0.035176 GGCAGGTTGGTACGGTACAA 59.965 55.000 19.14 5.93 0.00 2.41
133 134 1.542987 GGCAGGTTGGTACGGTACAAA 60.543 52.381 19.14 12.04 0.00 2.83
134 135 1.802365 GCAGGTTGGTACGGTACAAAG 59.198 52.381 19.14 4.96 0.00 2.77
135 136 1.802365 CAGGTTGGTACGGTACAAAGC 59.198 52.381 23.60 23.60 39.73 3.51
136 137 1.159285 GGTTGGTACGGTACAAAGCC 58.841 55.000 21.50 15.24 34.77 4.35
137 138 1.542987 GGTTGGTACGGTACAAAGCCA 60.543 52.381 21.50 8.08 34.77 4.75
138 139 2.220313 GTTGGTACGGTACAAAGCCAA 58.780 47.619 19.14 11.06 34.12 4.52
139 140 1.881591 TGGTACGGTACAAAGCCAAC 58.118 50.000 19.14 0.97 0.00 3.77
140 141 1.417145 TGGTACGGTACAAAGCCAACT 59.583 47.619 19.14 0.00 0.00 3.16
141 142 2.632028 TGGTACGGTACAAAGCCAACTA 59.368 45.455 19.14 0.00 0.00 2.24
142 143 2.995939 GGTACGGTACAAAGCCAACTAC 59.004 50.000 19.14 0.00 0.00 2.73
143 144 2.914695 ACGGTACAAAGCCAACTACA 57.085 45.000 0.00 0.00 0.00 2.74
144 145 2.762745 ACGGTACAAAGCCAACTACAG 58.237 47.619 0.00 0.00 0.00 2.74
145 146 2.103601 ACGGTACAAAGCCAACTACAGT 59.896 45.455 0.00 0.00 0.00 3.55
146 147 2.735134 CGGTACAAAGCCAACTACAGTC 59.265 50.000 0.00 0.00 0.00 3.51
147 148 3.072211 GGTACAAAGCCAACTACAGTCC 58.928 50.000 0.00 0.00 0.00 3.85
148 149 2.271944 ACAAAGCCAACTACAGTCCC 57.728 50.000 0.00 0.00 0.00 4.46
149 150 1.774856 ACAAAGCCAACTACAGTCCCT 59.225 47.619 0.00 0.00 0.00 4.20
150 151 2.224548 ACAAAGCCAACTACAGTCCCTC 60.225 50.000 0.00 0.00 0.00 4.30
151 152 2.031495 AAGCCAACTACAGTCCCTCT 57.969 50.000 0.00 0.00 0.00 3.69
152 153 1.562783 AGCCAACTACAGTCCCTCTC 58.437 55.000 0.00 0.00 0.00 3.20
153 154 1.077993 AGCCAACTACAGTCCCTCTCT 59.922 52.381 0.00 0.00 0.00 3.10
154 155 1.205893 GCCAACTACAGTCCCTCTCTG 59.794 57.143 0.00 0.00 38.68 3.35
155 156 1.205893 CCAACTACAGTCCCTCTCTGC 59.794 57.143 0.00 0.00 36.50 4.26
156 157 1.895798 CAACTACAGTCCCTCTCTGCA 59.104 52.381 0.00 0.00 36.50 4.41
157 158 2.499289 CAACTACAGTCCCTCTCTGCAT 59.501 50.000 0.00 0.00 36.50 3.96
158 159 3.671740 ACTACAGTCCCTCTCTGCATA 57.328 47.619 0.00 0.00 36.50 3.14
159 160 3.292460 ACTACAGTCCCTCTCTGCATAC 58.708 50.000 0.00 0.00 36.50 2.39
160 161 2.541233 ACAGTCCCTCTCTGCATACT 57.459 50.000 0.00 0.00 36.50 2.12
161 162 2.826488 ACAGTCCCTCTCTGCATACTT 58.174 47.619 0.00 0.00 36.50 2.24
162 163 2.763448 ACAGTCCCTCTCTGCATACTTC 59.237 50.000 0.00 0.00 36.50 3.01
163 164 2.102252 CAGTCCCTCTCTGCATACTTCC 59.898 54.545 0.00 0.00 0.00 3.46
164 165 2.111384 GTCCCTCTCTGCATACTTCCA 58.889 52.381 0.00 0.00 0.00 3.53
165 166 2.501723 GTCCCTCTCTGCATACTTCCAA 59.498 50.000 0.00 0.00 0.00 3.53
166 167 2.501723 TCCCTCTCTGCATACTTCCAAC 59.498 50.000 0.00 0.00 0.00 3.77
167 168 2.503356 CCCTCTCTGCATACTTCCAACT 59.497 50.000 0.00 0.00 0.00 3.16
168 169 3.431486 CCCTCTCTGCATACTTCCAACTC 60.431 52.174 0.00 0.00 0.00 3.01
169 170 3.450457 CCTCTCTGCATACTTCCAACTCT 59.550 47.826 0.00 0.00 0.00 3.24
170 171 4.431809 CTCTCTGCATACTTCCAACTCTG 58.568 47.826 0.00 0.00 0.00 3.35
171 172 2.935201 CTCTGCATACTTCCAACTCTGC 59.065 50.000 0.00 0.00 0.00 4.26
172 173 2.568956 TCTGCATACTTCCAACTCTGCT 59.431 45.455 0.00 0.00 0.00 4.24
173 174 3.008375 TCTGCATACTTCCAACTCTGCTT 59.992 43.478 0.00 0.00 0.00 3.91
174 175 3.076621 TGCATACTTCCAACTCTGCTTG 58.923 45.455 0.00 0.00 0.00 4.01
175 176 3.244526 TGCATACTTCCAACTCTGCTTGA 60.245 43.478 0.00 0.00 0.00 3.02
176 177 3.753272 GCATACTTCCAACTCTGCTTGAA 59.247 43.478 0.00 0.00 0.00 2.69
177 178 4.142730 GCATACTTCCAACTCTGCTTGAAG 60.143 45.833 0.00 0.00 0.00 3.02
178 179 2.856222 ACTTCCAACTCTGCTTGAAGG 58.144 47.619 0.00 0.00 0.00 3.46
179 180 1.538950 CTTCCAACTCTGCTTGAAGGC 59.461 52.381 0.00 0.00 0.00 4.35
180 181 0.767375 TCCAACTCTGCTTGAAGGCT 59.233 50.000 0.00 0.00 0.00 4.58
181 182 1.977854 TCCAACTCTGCTTGAAGGCTA 59.022 47.619 0.00 0.00 0.00 3.93
182 183 2.573462 TCCAACTCTGCTTGAAGGCTAT 59.427 45.455 0.00 0.00 0.00 2.97
183 184 3.009473 TCCAACTCTGCTTGAAGGCTATT 59.991 43.478 0.00 0.00 0.00 1.73
184 185 3.128242 CCAACTCTGCTTGAAGGCTATTG 59.872 47.826 0.00 0.00 0.00 1.90
185 186 3.710209 ACTCTGCTTGAAGGCTATTGT 57.290 42.857 0.00 0.00 0.00 2.71
186 187 3.604582 ACTCTGCTTGAAGGCTATTGTC 58.395 45.455 0.00 0.00 0.00 3.18
187 188 3.008375 ACTCTGCTTGAAGGCTATTGTCA 59.992 43.478 0.00 0.00 0.00 3.58
188 189 3.338249 TCTGCTTGAAGGCTATTGTCAC 58.662 45.455 0.00 0.00 0.00 3.67
189 190 3.076621 CTGCTTGAAGGCTATTGTCACA 58.923 45.455 0.00 0.00 0.00 3.58
190 191 3.689347 TGCTTGAAGGCTATTGTCACAT 58.311 40.909 0.00 0.00 0.00 3.21
191 192 3.441222 TGCTTGAAGGCTATTGTCACATG 59.559 43.478 0.00 0.00 0.00 3.21
192 193 3.441572 GCTTGAAGGCTATTGTCACATGT 59.558 43.478 0.00 0.00 0.00 3.21
193 194 4.673580 GCTTGAAGGCTATTGTCACATGTG 60.674 45.833 20.18 20.18 0.00 3.21
194 195 4.284829 TGAAGGCTATTGTCACATGTGA 57.715 40.909 24.56 24.56 37.24 3.58
195 196 4.256110 TGAAGGCTATTGTCACATGTGAG 58.744 43.478 28.54 17.08 40.75 3.51
196 197 2.636830 AGGCTATTGTCACATGTGAGC 58.363 47.619 28.54 24.92 40.75 4.26
197 198 2.026915 AGGCTATTGTCACATGTGAGCA 60.027 45.455 28.54 23.60 40.75 4.26
198 199 2.353889 GGCTATTGTCACATGTGAGCAG 59.646 50.000 28.54 21.03 40.75 4.24
199 200 2.223203 GCTATTGTCACATGTGAGCAGC 60.223 50.000 28.54 25.61 40.75 5.25
200 201 2.195741 ATTGTCACATGTGAGCAGCT 57.804 45.000 28.54 15.87 40.75 4.24
201 202 1.232119 TTGTCACATGTGAGCAGCTG 58.768 50.000 28.54 10.11 40.75 4.24
202 203 1.232621 TGTCACATGTGAGCAGCTGC 61.233 55.000 31.53 31.53 40.75 5.25
203 204 1.673337 TCACATGTGAGCAGCTGCC 60.673 57.895 34.39 24.89 43.38 4.85
204 205 1.674651 CACATGTGAGCAGCTGCCT 60.675 57.895 34.39 21.60 43.38 4.75
205 206 0.392060 CACATGTGAGCAGCTGCCTA 60.392 55.000 34.39 21.10 43.38 3.93
206 207 0.392193 ACATGTGAGCAGCTGCCTAC 60.392 55.000 34.39 30.14 43.38 3.18
207 208 0.392060 CATGTGAGCAGCTGCCTACA 60.392 55.000 33.89 33.89 43.38 2.74
208 209 0.545171 ATGTGAGCAGCTGCCTACAT 59.455 50.000 34.74 34.74 43.38 2.29
209 210 0.392060 TGTGAGCAGCTGCCTACATG 60.392 55.000 34.39 0.00 43.38 3.21
210 211 0.107993 GTGAGCAGCTGCCTACATGA 60.108 55.000 34.39 7.60 43.38 3.07
211 212 0.835276 TGAGCAGCTGCCTACATGAT 59.165 50.000 34.39 14.14 43.38 2.45
212 213 1.227639 GAGCAGCTGCCTACATGATG 58.772 55.000 34.39 0.00 43.38 3.07
213 214 0.545171 AGCAGCTGCCTACATGATGT 59.455 50.000 34.39 9.65 43.38 3.06
214 215 1.764723 AGCAGCTGCCTACATGATGTA 59.235 47.619 34.39 5.05 43.38 2.29
215 216 2.171237 AGCAGCTGCCTACATGATGTAA 59.829 45.455 34.39 0.00 43.38 2.41
216 217 2.945008 GCAGCTGCCTACATGATGTAAA 59.055 45.455 28.76 0.00 31.67 2.01
217 218 3.378112 GCAGCTGCCTACATGATGTAAAA 59.622 43.478 28.76 0.00 31.67 1.52
218 219 4.142403 GCAGCTGCCTACATGATGTAAAAA 60.142 41.667 28.76 0.00 31.67 1.94
219 220 5.450965 GCAGCTGCCTACATGATGTAAAAAT 60.451 40.000 28.76 0.00 31.67 1.82
220 221 5.975344 CAGCTGCCTACATGATGTAAAAATG 59.025 40.000 6.75 0.00 31.67 2.32
221 222 5.887598 AGCTGCCTACATGATGTAAAAATGA 59.112 36.000 6.75 0.00 31.67 2.57
222 223 6.039047 AGCTGCCTACATGATGTAAAAATGAG 59.961 38.462 6.75 0.00 31.67 2.90
223 224 6.135290 TGCCTACATGATGTAAAAATGAGC 57.865 37.500 6.75 2.63 31.67 4.26
224 225 5.887598 TGCCTACATGATGTAAAAATGAGCT 59.112 36.000 6.75 0.00 31.67 4.09
225 226 6.377996 TGCCTACATGATGTAAAAATGAGCTT 59.622 34.615 6.75 0.00 31.67 3.74
226 227 6.914757 GCCTACATGATGTAAAAATGAGCTTC 59.085 38.462 6.75 0.00 31.67 3.86
227 228 7.420800 CCTACATGATGTAAAAATGAGCTTCC 58.579 38.462 6.75 0.00 31.67 3.46
228 229 6.212888 ACATGATGTAAAAATGAGCTTCCC 57.787 37.500 0.00 0.00 0.00 3.97
229 230 5.954150 ACATGATGTAAAAATGAGCTTCCCT 59.046 36.000 0.00 0.00 0.00 4.20
230 231 6.096001 ACATGATGTAAAAATGAGCTTCCCTC 59.904 38.462 0.00 0.00 41.15 4.30
231 232 5.819991 TGATGTAAAAATGAGCTTCCCTCT 58.180 37.500 0.00 0.00 41.35 3.69
232 233 6.957631 TGATGTAAAAATGAGCTTCCCTCTA 58.042 36.000 0.00 0.00 41.35 2.43
233 234 7.577303 TGATGTAAAAATGAGCTTCCCTCTAT 58.423 34.615 0.00 0.00 41.35 1.98
234 235 7.716998 TGATGTAAAAATGAGCTTCCCTCTATC 59.283 37.037 0.00 0.00 41.35 2.08
235 236 6.049149 TGTAAAAATGAGCTTCCCTCTATCG 58.951 40.000 0.00 0.00 41.35 2.92
236 237 4.762289 AAAATGAGCTTCCCTCTATCGT 57.238 40.909 0.00 0.00 41.35 3.73
237 238 4.329462 AAATGAGCTTCCCTCTATCGTC 57.671 45.455 0.00 0.00 41.35 4.20
238 239 2.738587 TGAGCTTCCCTCTATCGTCT 57.261 50.000 0.00 0.00 41.35 4.18
239 240 2.577700 TGAGCTTCCCTCTATCGTCTC 58.422 52.381 0.00 0.00 41.35 3.36
240 241 2.173782 TGAGCTTCCCTCTATCGTCTCT 59.826 50.000 0.00 0.00 41.35 3.10
241 242 3.391626 TGAGCTTCCCTCTATCGTCTCTA 59.608 47.826 0.00 0.00 41.35 2.43
242 243 4.141459 TGAGCTTCCCTCTATCGTCTCTAA 60.141 45.833 0.00 0.00 41.35 2.10
243 244 4.394729 AGCTTCCCTCTATCGTCTCTAAG 58.605 47.826 0.00 0.00 0.00 2.18
244 245 3.504520 GCTTCCCTCTATCGTCTCTAAGG 59.495 52.174 0.00 0.00 0.00 2.69
245 246 4.747316 GCTTCCCTCTATCGTCTCTAAGGA 60.747 50.000 0.00 0.00 0.00 3.36
246 247 4.354893 TCCCTCTATCGTCTCTAAGGAC 57.645 50.000 0.00 0.00 0.00 3.85
247 248 3.072768 TCCCTCTATCGTCTCTAAGGACC 59.927 52.174 0.00 0.00 33.07 4.46
248 249 3.181442 CCCTCTATCGTCTCTAAGGACCA 60.181 52.174 0.00 0.00 33.07 4.02
249 250 4.507691 CCCTCTATCGTCTCTAAGGACCAT 60.508 50.000 0.00 0.00 33.07 3.55
250 251 4.698304 CCTCTATCGTCTCTAAGGACCATC 59.302 50.000 0.00 0.00 33.07 3.51
251 252 4.653868 TCTATCGTCTCTAAGGACCATCC 58.346 47.826 0.00 0.00 36.58 3.51
252 253 2.068834 TCGTCTCTAAGGACCATCCC 57.931 55.000 0.00 0.00 37.19 3.85
253 254 0.669077 CGTCTCTAAGGACCATCCCG 59.331 60.000 0.00 0.00 37.19 5.14
254 255 0.389757 GTCTCTAAGGACCATCCCGC 59.610 60.000 0.00 0.00 37.19 6.13
255 256 0.759436 TCTCTAAGGACCATCCCGCC 60.759 60.000 0.00 0.00 37.19 6.13
256 257 1.759459 CTCTAAGGACCATCCCGCCC 61.759 65.000 0.00 0.00 37.19 6.13
257 258 2.770904 TAAGGACCATCCCGCCCC 60.771 66.667 0.00 0.00 37.19 5.80
263 264 4.820744 CCATCCCGCCCCCTGTTG 62.821 72.222 0.00 0.00 0.00 3.33
271 272 3.673484 CCCCCTGTTGCGCTTGTG 61.673 66.667 9.73 0.00 0.00 3.33
272 273 3.673484 CCCCTGTTGCGCTTGTGG 61.673 66.667 9.73 6.02 0.00 4.17
273 274 4.347453 CCCTGTTGCGCTTGTGGC 62.347 66.667 9.73 0.00 37.64 5.01
274 275 4.347453 CCTGTTGCGCTTGTGGCC 62.347 66.667 9.73 0.00 37.74 5.36
275 276 3.289834 CTGTTGCGCTTGTGGCCT 61.290 61.111 9.73 0.00 37.74 5.19
276 277 3.547249 CTGTTGCGCTTGTGGCCTG 62.547 63.158 9.73 0.00 37.74 4.85
277 278 3.595758 GTTGCGCTTGTGGCCTGT 61.596 61.111 9.73 0.00 37.74 4.00
278 279 2.112087 TTGCGCTTGTGGCCTGTA 59.888 55.556 9.73 0.00 37.74 2.74
279 280 2.258013 TTGCGCTTGTGGCCTGTAC 61.258 57.895 9.73 0.00 37.74 2.90
280 281 2.668212 GCGCTTGTGGCCTGTACA 60.668 61.111 3.32 0.00 37.74 2.90
281 282 2.258013 GCGCTTGTGGCCTGTACAA 61.258 57.895 3.32 5.54 37.74 2.41
282 283 1.791103 GCGCTTGTGGCCTGTACAAA 61.791 55.000 3.32 0.00 37.56 2.83
283 284 0.238289 CGCTTGTGGCCTGTACAAAG 59.762 55.000 3.32 0.00 37.56 2.77
284 285 0.039165 GCTTGTGGCCTGTACAAAGC 60.039 55.000 10.93 10.93 37.56 3.51
285 286 1.609208 CTTGTGGCCTGTACAAAGCT 58.391 50.000 15.11 0.00 37.56 3.74
286 287 2.778299 CTTGTGGCCTGTACAAAGCTA 58.222 47.619 15.11 8.20 37.56 3.32
287 288 2.178912 TGTGGCCTGTACAAAGCTAC 57.821 50.000 20.62 20.62 38.36 3.58
288 289 1.271163 TGTGGCCTGTACAAAGCTACC 60.271 52.381 22.99 11.42 37.21 3.18
289 290 1.060729 TGGCCTGTACAAAGCTACCA 58.939 50.000 15.11 5.96 0.00 3.25
290 291 1.633432 TGGCCTGTACAAAGCTACCAT 59.367 47.619 15.11 0.00 0.00 3.55
291 292 2.289565 GGCCTGTACAAAGCTACCATC 58.710 52.381 15.11 0.00 0.00 3.51
292 293 1.933853 GCCTGTACAAAGCTACCATCG 59.066 52.381 9.71 0.00 0.00 3.84
293 294 2.550978 CCTGTACAAAGCTACCATCGG 58.449 52.381 0.00 0.00 0.00 4.18
294 295 2.093658 CCTGTACAAAGCTACCATCGGT 60.094 50.000 0.00 0.00 40.16 4.69
295 296 3.131577 CCTGTACAAAGCTACCATCGGTA 59.868 47.826 0.00 0.00 37.09 4.02
296 297 4.202223 CCTGTACAAAGCTACCATCGGTAT 60.202 45.833 0.00 0.00 37.56 2.73
297 298 5.347620 TGTACAAAGCTACCATCGGTATT 57.652 39.130 0.00 0.00 37.56 1.89
298 299 5.353938 TGTACAAAGCTACCATCGGTATTC 58.646 41.667 0.00 0.00 37.56 1.75
299 300 4.481368 ACAAAGCTACCATCGGTATTCA 57.519 40.909 0.00 0.00 37.56 2.57
300 301 4.442706 ACAAAGCTACCATCGGTATTCAG 58.557 43.478 0.00 0.00 37.56 3.02
301 302 2.821991 AGCTACCATCGGTATTCAGC 57.178 50.000 0.00 0.00 37.56 4.26
302 303 2.320781 AGCTACCATCGGTATTCAGCT 58.679 47.619 2.92 2.92 38.58 4.24
303 304 2.700897 AGCTACCATCGGTATTCAGCTT 59.299 45.455 2.92 0.00 39.88 3.74
304 305 3.134804 AGCTACCATCGGTATTCAGCTTT 59.865 43.478 2.92 0.00 39.88 3.51
305 306 3.248602 GCTACCATCGGTATTCAGCTTTG 59.751 47.826 0.00 0.00 37.56 2.77
306 307 3.350219 ACCATCGGTATTCAGCTTTGT 57.650 42.857 0.00 0.00 32.11 2.83
307 308 3.270877 ACCATCGGTATTCAGCTTTGTC 58.729 45.455 0.00 0.00 32.11 3.18
308 309 2.614057 CCATCGGTATTCAGCTTTGTCC 59.386 50.000 0.00 0.00 0.00 4.02
309 310 3.270027 CATCGGTATTCAGCTTTGTCCA 58.730 45.455 0.00 0.00 0.00 4.02
310 311 2.972625 TCGGTATTCAGCTTTGTCCAG 58.027 47.619 0.00 0.00 0.00 3.86
311 312 1.398390 CGGTATTCAGCTTTGTCCAGC 59.602 52.381 0.00 0.00 40.44 4.85
312 313 1.745653 GGTATTCAGCTTTGTCCAGCC 59.254 52.381 0.00 0.00 41.12 4.85
313 314 1.398390 GTATTCAGCTTTGTCCAGCCG 59.602 52.381 0.00 0.00 41.12 5.52
314 315 0.962356 ATTCAGCTTTGTCCAGCCGG 60.962 55.000 0.00 0.00 41.12 6.13
315 316 3.741476 CAGCTTTGTCCAGCCGGC 61.741 66.667 21.89 21.89 41.12 6.13
316 317 4.269523 AGCTTTGTCCAGCCGGCA 62.270 61.111 31.54 4.59 41.12 5.69
317 318 3.741476 GCTTTGTCCAGCCGGCAG 61.741 66.667 31.54 22.32 33.21 4.85
318 319 3.058160 CTTTGTCCAGCCGGCAGG 61.058 66.667 30.92 30.92 41.62 4.85
319 320 4.659172 TTTGTCCAGCCGGCAGGG 62.659 66.667 34.66 30.36 38.20 4.45
338 339 3.471354 GGAGGTACCCATTGGAACG 57.529 57.895 8.74 0.00 34.81 3.95
339 340 0.107361 GGAGGTACCCATTGGAACGG 60.107 60.000 8.74 0.00 34.81 4.44
340 341 0.746923 GAGGTACCCATTGGAACGGC 60.747 60.000 8.74 0.00 34.81 5.68
341 342 1.205460 AGGTACCCATTGGAACGGCT 61.205 55.000 8.74 0.00 34.81 5.52
342 343 1.029947 GGTACCCATTGGAACGGCTG 61.030 60.000 3.62 0.00 34.81 4.85
343 344 1.377987 TACCCATTGGAACGGCTGC 60.378 57.895 3.62 0.00 34.81 5.25
344 345 1.847798 TACCCATTGGAACGGCTGCT 61.848 55.000 3.62 0.00 34.81 4.24
345 346 2.409870 CCCATTGGAACGGCTGCTC 61.410 63.158 3.62 0.00 0.00 4.26
346 347 1.675310 CCATTGGAACGGCTGCTCA 60.675 57.895 0.00 0.00 0.00 4.26
347 348 1.503542 CATTGGAACGGCTGCTCAC 59.496 57.895 0.00 0.00 0.00 3.51
348 349 1.073025 ATTGGAACGGCTGCTCACA 59.927 52.632 0.00 0.00 0.00 3.58
349 350 0.322816 ATTGGAACGGCTGCTCACAT 60.323 50.000 0.00 0.00 0.00 3.21
350 351 0.537143 TTGGAACGGCTGCTCACATT 60.537 50.000 0.00 0.00 0.00 2.71
351 352 0.537143 TGGAACGGCTGCTCACATTT 60.537 50.000 0.00 0.00 0.00 2.32
352 353 0.169009 GGAACGGCTGCTCACATTTC 59.831 55.000 0.00 0.00 0.00 2.17
353 354 0.874390 GAACGGCTGCTCACATTTCA 59.126 50.000 0.00 0.00 0.00 2.69
354 355 0.877071 AACGGCTGCTCACATTTCAG 59.123 50.000 0.00 0.00 0.00 3.02
355 356 0.250467 ACGGCTGCTCACATTTCAGT 60.250 50.000 0.00 0.00 0.00 3.41
442 443 6.512342 TTGTAACTAGCTAGACAAGAGGAC 57.488 41.667 27.45 11.91 0.00 3.85
448 449 3.707316 AGCTAGACAAGAGGACTGACAT 58.293 45.455 0.00 0.00 0.00 3.06
451 452 2.183679 AGACAAGAGGACTGACATCCC 58.816 52.381 0.00 0.00 39.91 3.85
464 465 4.040706 ACTGACATCCCTTTTACCGTGTTA 59.959 41.667 0.00 0.00 0.00 2.41
468 469 4.157105 ACATCCCTTTTACCGTGTTATTGC 59.843 41.667 0.00 0.00 0.00 3.56
482 483 5.503498 GTGTTATTGCGACAAGTGTGTTTA 58.497 37.500 0.00 0.00 38.41 2.01
494 495 3.202906 AGTGTGTTTATGTTCTGTGCGT 58.797 40.909 0.00 0.00 0.00 5.24
503 504 2.683968 TGTTCTGTGCGTAGGTGAATC 58.316 47.619 0.00 0.00 0.00 2.52
504 505 2.036604 TGTTCTGTGCGTAGGTGAATCA 59.963 45.455 0.00 0.00 0.00 2.57
509 510 5.109210 TCTGTGCGTAGGTGAATCATTAAG 58.891 41.667 0.00 0.00 0.00 1.85
514 515 5.221641 TGCGTAGGTGAATCATTAAGGCTAT 60.222 40.000 0.00 0.00 0.00 2.97
522 523 8.725148 GGTGAATCATTAAGGCTATTCATAGTG 58.275 37.037 11.61 0.00 39.70 2.74
523 524 9.494271 GTGAATCATTAAGGCTATTCATAGTGA 57.506 33.333 11.61 2.64 39.70 3.41
525 526 9.160496 GAATCATTAAGGCTATTCATAGTGAGG 57.840 37.037 2.77 0.00 32.96 3.86
527 528 7.901029 TCATTAAGGCTATTCATAGTGAGGAG 58.099 38.462 0.00 0.00 32.96 3.69
539 540 9.688091 ATTCATAGTGAGGAGTATCATATACGT 57.312 33.333 0.00 0.00 36.25 3.57
540 541 8.494016 TCATAGTGAGGAGTATCATATACGTG 57.506 38.462 0.00 0.00 36.25 4.49
541 542 5.630661 AGTGAGGAGTATCATATACGTGC 57.369 43.478 0.00 0.00 36.25 5.34
542 543 5.070685 AGTGAGGAGTATCATATACGTGCA 58.929 41.667 0.00 0.00 36.25 4.57
543 544 5.712446 AGTGAGGAGTATCATATACGTGCAT 59.288 40.000 0.00 0.00 36.25 3.96
544 545 6.884836 AGTGAGGAGTATCATATACGTGCATA 59.115 38.462 0.00 0.00 36.25 3.14
711 717 1.428370 GCGCCGAGTGCATGATAACA 61.428 55.000 0.00 0.00 41.33 2.41
748 754 1.604755 CTAGCCTAACGTCTCTCGCAT 59.395 52.381 0.00 0.00 44.19 4.73
749 755 0.818296 AGCCTAACGTCTCTCGCATT 59.182 50.000 0.00 0.00 44.19 3.56
804 810 4.675029 GTGGACGGTGGTCGGTGG 62.675 72.222 0.00 0.00 44.39 4.61
859 868 0.033405 CGACCTCCCTTGGACCTCTA 60.033 60.000 0.00 0.00 0.00 2.43
910 919 1.811266 CTTGACGTGAGCCCATCCG 60.811 63.158 0.00 0.00 0.00 4.18
965 974 1.597461 GCCACCTACCTGTCAGACC 59.403 63.158 0.00 0.00 0.00 3.85
970 979 3.195825 CCACCTACCTGTCAGACCTTAAG 59.804 52.174 0.00 0.00 0.00 1.85
1200 1215 3.052081 CCTCCGATTCCCCTAGCG 58.948 66.667 0.00 0.00 0.00 4.26
1230 1246 2.920384 GCCTCGATCTCCCTCCCC 60.920 72.222 0.00 0.00 0.00 4.81
1242 1258 1.757306 CCTCCCCAATCTGATCGGG 59.243 63.158 6.69 6.69 39.92 5.14
1350 1367 2.439156 GCGCTCCATGGGAAGCTT 60.439 61.111 20.00 0.00 34.25 3.74
1406 1423 1.739035 CGCCTCGATCAAGGTAAAGCA 60.739 52.381 0.68 0.00 38.79 3.91
1407 1424 1.936547 GCCTCGATCAAGGTAAAGCAG 59.063 52.381 0.68 0.00 38.79 4.24
1408 1425 2.418746 GCCTCGATCAAGGTAAAGCAGA 60.419 50.000 0.68 0.00 38.79 4.26
1409 1426 3.452474 CCTCGATCAAGGTAAAGCAGAG 58.548 50.000 0.00 0.00 0.00 3.35
1410 1427 2.863137 CTCGATCAAGGTAAAGCAGAGC 59.137 50.000 0.00 0.00 0.00 4.09
1490 1508 1.065709 GTCCGGGGATTGAGCTTTGTA 60.066 52.381 0.00 0.00 0.00 2.41
1514 1532 3.691575 TGTGTCCTGTTTTGACCTTTGA 58.308 40.909 0.00 0.00 31.60 2.69
1667 1685 1.450312 CCAGTCCAGGATCGTTGGC 60.450 63.158 9.44 0.00 35.62 4.52
1940 2082 9.794685 CTACAGTACTAGTTCATATGCCATATG 57.205 37.037 16.95 16.95 43.09 1.78
2239 2387 3.903530 AGTGGGGAAATTTGAGTTCCT 57.096 42.857 0.00 0.00 43.55 3.36
3071 3461 1.404315 GGTACACTTTCTCGAGGCCAG 60.404 57.143 13.56 8.61 0.00 4.85
3086 3476 2.026822 AGGCCAGAATAACCTGTGACAG 60.027 50.000 5.01 5.42 30.82 3.51
3178 3568 5.694458 AGACGCAAAACTTTTGTGTTTTCTT 59.306 32.000 26.45 9.55 45.04 2.52
3333 3725 6.294675 CCATCTCTTTACAATCAACCTTGCAA 60.295 38.462 0.00 0.00 0.00 4.08
3491 3883 1.336755 AGGTGATGTGCCACGAAAAAC 59.663 47.619 0.00 0.00 37.91 2.43
3949 4341 5.661458 TCTGTGCTGCTAAGTATTAACTCC 58.339 41.667 0.00 0.00 33.75 3.85
4021 4413 0.979665 AGAGTCCATGTGGTGACCAG 59.020 55.000 3.58 0.00 32.34 4.00
4533 4925 7.870826 TCTTCTAAAATGCGAAATGAGAAACA 58.129 30.769 0.00 0.00 0.00 2.83
4572 4964 1.468054 GGCAGTGAATTTGACCGATGC 60.468 52.381 0.00 0.00 0.00 3.91
4591 4983 2.892852 TGCTACTTTTTGGCAATCTGCT 59.107 40.909 0.00 0.00 44.28 4.24
4737 5129 7.911651 AGAAGAGAAGGATTTCAAGACATACA 58.088 34.615 0.00 0.00 35.70 2.29
4922 5314 7.754069 TTTGAAAGTGCTGAAAAACATACTG 57.246 32.000 0.00 0.00 0.00 2.74
5052 5444 6.599356 TTTCCCTTATAAAAAGCCAAGGAC 57.401 37.500 0.80 0.00 40.02 3.85
5095 5487 9.715121 CCTTTTGCAAGCCATATATTGAATAAT 57.285 29.630 0.00 0.00 0.00 1.28
5657 6066 6.640518 TCCTGCTCTATTTCACTATTTCGTT 58.359 36.000 0.00 0.00 0.00 3.85
5752 6161 2.160219 TGCTGCTGCAGAAAGAATTACG 59.840 45.455 32.30 3.24 45.31 3.18
5908 6317 9.326489 AGCCAGAGTTCATAATATGGTAGATTA 57.674 33.333 0.00 0.00 0.00 1.75
5941 6351 6.850234 TGAGTGGTTTAGGGGTTACAAATAA 58.150 36.000 0.00 0.00 0.00 1.40
6016 6426 4.424061 TTTCATTTCGAGGAGCAACATG 57.576 40.909 0.00 0.00 0.00 3.21
6225 6635 6.203723 AGTCAAAACATGCAGAGACTAACTTC 59.796 38.462 9.02 0.00 34.83 3.01
6544 6954 5.677852 GCAAAAATCCGTTACCCACCTTATC 60.678 44.000 0.00 0.00 0.00 1.75
6647 7058 4.833469 CGTGTATTGAGTATTTGACGCA 57.167 40.909 0.00 0.00 35.89 5.24
6667 7078 5.238432 ACGCACAAAGTGAAAGTGATCATAA 59.762 36.000 0.00 0.00 35.23 1.90
6762 7176 6.266168 TGGGTTCATTAGTGTAAGCAAATG 57.734 37.500 0.00 0.00 0.00 2.32
6771 7185 7.928908 TTAGTGTAAGCAAATGCAAAGAAAG 57.071 32.000 8.28 0.00 45.16 2.62
7363 7777 3.743521 AGCTTGTTTGAGTGTGATAGCA 58.256 40.909 0.00 0.00 0.00 3.49
7703 8122 0.976641 TCGCAAATCACTCCTCCAGT 59.023 50.000 0.00 0.00 34.67 4.00
7737 8156 5.521906 TGCAAAGGTAAGCATTGTTGTAA 57.478 34.783 0.00 0.00 35.51 2.41
7738 8157 5.527951 TGCAAAGGTAAGCATTGTTGTAAG 58.472 37.500 0.00 0.00 35.51 2.34
7826 8246 4.385825 TGCTTTGTCTTCACCGTAATCTT 58.614 39.130 0.00 0.00 0.00 2.40
8088 8511 4.576463 GCTGCTGTAAACTATTGCCATACT 59.424 41.667 0.00 0.00 0.00 2.12
8089 8512 5.066505 GCTGCTGTAAACTATTGCCATACTT 59.933 40.000 0.00 0.00 0.00 2.24
8090 8513 6.677781 TGCTGTAAACTATTGCCATACTTC 57.322 37.500 0.00 0.00 0.00 3.01
8091 8514 6.176896 TGCTGTAAACTATTGCCATACTTCA 58.823 36.000 0.00 0.00 0.00 3.02
8092 8515 6.093495 TGCTGTAAACTATTGCCATACTTCAC 59.907 38.462 0.00 0.00 0.00 3.18
8098 8521 3.848272 ATTGCCATACTTCACCAAACG 57.152 42.857 0.00 0.00 0.00 3.60
8280 8707 5.784177 CTTGCCTGTACTCTTGAGAACTTA 58.216 41.667 4.49 0.00 0.00 2.24
8381 8808 9.765795 CTATACAAGTCTTATCTTTTGGTAGGG 57.234 37.037 0.00 0.00 0.00 3.53
8407 8834 7.083875 AGGAAAAGATGAATTTTATTCGCGA 57.916 32.000 3.71 3.71 32.62 5.87
8467 8894 7.070198 TGGCAAATGTTTCAGAATCCATATCAT 59.930 33.333 0.00 0.00 0.00 2.45
8603 9030 3.330701 AGCTGGGACAAGAGGACATTTTA 59.669 43.478 0.00 0.00 38.70 1.52
8611 9038 6.659242 GGACAAGAGGACATTTTAAAGATGGA 59.341 38.462 12.13 0.00 0.00 3.41
8790 9218 1.722034 GGTGGCCATCTATCCTGAGA 58.278 55.000 9.72 0.00 0.00 3.27
8816 9244 7.770897 ACCAGATAGATTGGTAATGTTCAGAAC 59.229 37.037 6.32 6.32 46.80 3.01
8844 9272 1.131315 GGAGTCTTCATTTGCTTCGCC 59.869 52.381 0.00 0.00 0.00 5.54
8856 9284 0.317854 GCTTCGCCACTTGTTCCAAC 60.318 55.000 0.00 0.00 0.00 3.77
8999 9427 3.260380 TGACCATGTTTTGCTTATTGGGG 59.740 43.478 0.00 0.00 0.00 4.96
9011 9439 3.619487 GCTTATTGGGGATTGCAGCAAAA 60.619 43.478 12.97 1.35 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.828223 AGGATATAAACAGGATGATGCTGAATC 59.172 37.037 21.00 13.02 38.14 2.52
1 2 7.696981 AGGATATAAACAGGATGATGCTGAAT 58.303 34.615 21.00 12.35 38.14 2.57
2 3 7.016957 AGAGGATATAAACAGGATGATGCTGAA 59.983 37.037 21.00 5.97 38.14 3.02
3 4 6.499699 AGAGGATATAAACAGGATGATGCTGA 59.500 38.462 21.00 0.00 38.14 4.26
4 5 6.594547 CAGAGGATATAAACAGGATGATGCTG 59.405 42.308 12.62 12.62 41.93 4.41
5 6 6.709281 CAGAGGATATAAACAGGATGATGCT 58.291 40.000 0.00 0.00 39.69 3.79
6 7 5.353678 GCAGAGGATATAAACAGGATGATGC 59.646 44.000 0.00 0.00 39.69 3.91
7 8 6.709281 AGCAGAGGATATAAACAGGATGATG 58.291 40.000 0.00 0.00 39.69 3.07
8 9 6.949117 AGCAGAGGATATAAACAGGATGAT 57.051 37.500 0.00 0.00 39.69 2.45
9 10 7.013220 ACTAGCAGAGGATATAAACAGGATGA 58.987 38.462 0.00 0.00 39.69 2.92
10 11 7.095910 CACTAGCAGAGGATATAAACAGGATG 58.904 42.308 0.00 0.00 46.00 3.51
11 12 6.295575 GCACTAGCAGAGGATATAAACAGGAT 60.296 42.308 0.00 0.00 41.58 3.24
12 13 5.011125 GCACTAGCAGAGGATATAAACAGGA 59.989 44.000 0.00 0.00 41.58 3.86
13 14 5.011533 AGCACTAGCAGAGGATATAAACAGG 59.988 44.000 0.00 0.00 45.49 4.00
14 15 6.095432 AGCACTAGCAGAGGATATAAACAG 57.905 41.667 0.00 0.00 45.49 3.16
15 16 5.278512 CGAGCACTAGCAGAGGATATAAACA 60.279 44.000 0.00 0.00 45.49 2.83
16 17 5.157781 CGAGCACTAGCAGAGGATATAAAC 58.842 45.833 0.00 0.00 45.49 2.01
17 18 4.218635 CCGAGCACTAGCAGAGGATATAAA 59.781 45.833 0.00 0.00 45.49 1.40
18 19 3.759086 CCGAGCACTAGCAGAGGATATAA 59.241 47.826 0.00 0.00 45.49 0.98
19 20 3.009143 TCCGAGCACTAGCAGAGGATATA 59.991 47.826 0.00 0.00 45.49 0.86
20 21 2.166829 CCGAGCACTAGCAGAGGATAT 58.833 52.381 0.00 0.00 45.49 1.63
21 22 1.143073 TCCGAGCACTAGCAGAGGATA 59.857 52.381 0.00 0.00 45.49 2.59
22 23 0.106469 TCCGAGCACTAGCAGAGGAT 60.106 55.000 0.00 0.00 45.49 3.24
23 24 1.032657 GTCCGAGCACTAGCAGAGGA 61.033 60.000 0.00 0.00 45.49 3.71
24 25 1.034838 AGTCCGAGCACTAGCAGAGG 61.035 60.000 0.00 0.00 45.49 3.69
25 26 0.814457 AAGTCCGAGCACTAGCAGAG 59.186 55.000 0.00 0.00 45.49 3.35
26 27 0.528017 CAAGTCCGAGCACTAGCAGA 59.472 55.000 0.00 0.00 45.49 4.26
27 28 0.244994 ACAAGTCCGAGCACTAGCAG 59.755 55.000 0.00 0.00 45.49 4.24
28 29 0.038251 CACAAGTCCGAGCACTAGCA 60.038 55.000 0.00 0.00 45.49 3.49
29 30 0.243907 TCACAAGTCCGAGCACTAGC 59.756 55.000 0.00 0.00 42.56 3.42
30 31 2.792890 CGATCACAAGTCCGAGCACTAG 60.793 54.545 0.00 0.00 0.00 2.57
31 32 1.132453 CGATCACAAGTCCGAGCACTA 59.868 52.381 0.00 0.00 0.00 2.74
32 33 0.109086 CGATCACAAGTCCGAGCACT 60.109 55.000 0.00 0.00 0.00 4.40
33 34 1.078759 CCGATCACAAGTCCGAGCAC 61.079 60.000 0.00 0.00 0.00 4.40
34 35 1.215382 CCGATCACAAGTCCGAGCA 59.785 57.895 0.00 0.00 0.00 4.26
35 36 0.389948 AACCGATCACAAGTCCGAGC 60.390 55.000 0.00 0.00 0.00 5.03
36 37 1.726791 CAAACCGATCACAAGTCCGAG 59.273 52.381 0.00 0.00 0.00 4.63
37 38 1.069513 ACAAACCGATCACAAGTCCGA 59.930 47.619 0.00 0.00 0.00 4.55
38 39 1.508632 ACAAACCGATCACAAGTCCG 58.491 50.000 0.00 0.00 0.00 4.79
39 40 2.875933 TCAACAAACCGATCACAAGTCC 59.124 45.455 0.00 0.00 0.00 3.85
40 41 3.560068 AGTCAACAAACCGATCACAAGTC 59.440 43.478 0.00 0.00 0.00 3.01
41 42 3.541632 AGTCAACAAACCGATCACAAGT 58.458 40.909 0.00 0.00 0.00 3.16
42 43 4.282068 CAAGTCAACAAACCGATCACAAG 58.718 43.478 0.00 0.00 0.00 3.16
43 44 3.066064 CCAAGTCAACAAACCGATCACAA 59.934 43.478 0.00 0.00 0.00 3.33
44 45 2.616376 CCAAGTCAACAAACCGATCACA 59.384 45.455 0.00 0.00 0.00 3.58
45 46 2.604614 GCCAAGTCAACAAACCGATCAC 60.605 50.000 0.00 0.00 0.00 3.06
46 47 1.606668 GCCAAGTCAACAAACCGATCA 59.393 47.619 0.00 0.00 0.00 2.92
47 48 1.068541 GGCCAAGTCAACAAACCGATC 60.069 52.381 0.00 0.00 0.00 3.69
48 49 0.958822 GGCCAAGTCAACAAACCGAT 59.041 50.000 0.00 0.00 0.00 4.18
49 50 1.440938 CGGCCAAGTCAACAAACCGA 61.441 55.000 2.24 0.00 41.61 4.69
50 51 1.008995 CGGCCAAGTCAACAAACCG 60.009 57.895 2.24 0.00 0.00 4.44
51 52 0.958822 ATCGGCCAAGTCAACAAACC 59.041 50.000 2.24 0.00 0.00 3.27
52 53 2.414161 GCTATCGGCCAAGTCAACAAAC 60.414 50.000 2.24 0.00 34.27 2.93
53 54 1.810151 GCTATCGGCCAAGTCAACAAA 59.190 47.619 2.24 0.00 34.27 2.83
54 55 1.271108 TGCTATCGGCCAAGTCAACAA 60.271 47.619 2.24 0.00 40.92 2.83
55 56 0.323302 TGCTATCGGCCAAGTCAACA 59.677 50.000 2.24 0.00 40.92 3.33
56 57 1.599542 GATGCTATCGGCCAAGTCAAC 59.400 52.381 2.24 0.00 40.92 3.18
57 58 1.953559 GATGCTATCGGCCAAGTCAA 58.046 50.000 2.24 0.00 40.92 3.18
58 59 3.686622 GATGCTATCGGCCAAGTCA 57.313 52.632 2.24 0.23 40.92 3.41
68 69 1.132588 GAAGCGGTGTCGATGCTATC 58.867 55.000 5.11 3.09 38.17 2.08
69 70 0.459899 TGAAGCGGTGTCGATGCTAT 59.540 50.000 5.11 0.00 38.17 2.97
70 71 0.179137 CTGAAGCGGTGTCGATGCTA 60.179 55.000 5.11 0.00 38.17 3.49
71 72 1.446792 CTGAAGCGGTGTCGATGCT 60.447 57.895 0.00 0.00 41.60 3.79
72 73 1.416813 CTCTGAAGCGGTGTCGATGC 61.417 60.000 0.00 0.00 39.00 3.91
73 74 0.109086 ACTCTGAAGCGGTGTCGATG 60.109 55.000 0.00 0.00 39.00 3.84
74 75 1.460504 TACTCTGAAGCGGTGTCGAT 58.539 50.000 0.00 0.00 39.00 3.59
75 76 1.241165 TTACTCTGAAGCGGTGTCGA 58.759 50.000 0.00 0.00 39.00 4.20
76 77 2.186076 GATTACTCTGAAGCGGTGTCG 58.814 52.381 0.00 0.00 39.81 4.35
77 78 2.094182 TGGATTACTCTGAAGCGGTGTC 60.094 50.000 0.00 0.00 0.00 3.67
78 79 1.899814 TGGATTACTCTGAAGCGGTGT 59.100 47.619 0.00 0.00 0.00 4.16
79 80 2.672961 TGGATTACTCTGAAGCGGTG 57.327 50.000 0.00 0.00 0.00 4.94
80 81 2.567615 AGTTGGATTACTCTGAAGCGGT 59.432 45.455 0.00 0.00 0.00 5.68
81 82 3.190874 GAGTTGGATTACTCTGAAGCGG 58.809 50.000 0.00 0.00 41.07 5.52
82 83 3.190874 GGAGTTGGATTACTCTGAAGCG 58.809 50.000 0.00 0.00 43.26 4.68
83 84 3.935828 GTGGAGTTGGATTACTCTGAAGC 59.064 47.826 0.00 0.00 43.26 3.86
84 85 4.020218 TGGTGGAGTTGGATTACTCTGAAG 60.020 45.833 0.00 0.00 43.26 3.02
85 86 3.907474 TGGTGGAGTTGGATTACTCTGAA 59.093 43.478 0.00 0.00 43.26 3.02
86 87 3.516586 TGGTGGAGTTGGATTACTCTGA 58.483 45.455 0.00 0.00 43.26 3.27
87 88 3.981071 TGGTGGAGTTGGATTACTCTG 57.019 47.619 0.00 0.00 43.26 3.35
88 89 6.409695 CCATATTGGTGGAGTTGGATTACTCT 60.410 42.308 0.00 0.00 42.02 3.24
89 90 5.765182 CCATATTGGTGGAGTTGGATTACTC 59.235 44.000 0.00 0.00 42.02 2.59
90 91 5.399038 CCCATATTGGTGGAGTTGGATTACT 60.399 44.000 0.00 0.00 42.02 2.24
91 92 4.827284 CCCATATTGGTGGAGTTGGATTAC 59.173 45.833 0.00 0.00 42.02 1.89
92 93 4.691376 GCCCATATTGGTGGAGTTGGATTA 60.691 45.833 0.00 0.00 42.02 1.75
93 94 3.914771 CCCATATTGGTGGAGTTGGATT 58.085 45.455 0.00 0.00 42.02 3.01
94 95 2.424812 GCCCATATTGGTGGAGTTGGAT 60.425 50.000 0.00 0.00 42.02 3.41
95 96 1.064017 GCCCATATTGGTGGAGTTGGA 60.064 52.381 0.00 0.00 42.02 3.53
96 97 1.341877 TGCCCATATTGGTGGAGTTGG 60.342 52.381 0.00 0.00 42.02 3.77
97 98 2.026641 CTGCCCATATTGGTGGAGTTG 58.973 52.381 0.00 0.00 42.02 3.16
98 99 1.063717 CCTGCCCATATTGGTGGAGTT 60.064 52.381 0.00 0.00 42.02 3.01
99 100 0.552848 CCTGCCCATATTGGTGGAGT 59.447 55.000 0.00 0.00 42.02 3.85
100 101 0.552848 ACCTGCCCATATTGGTGGAG 59.447 55.000 11.92 4.95 42.02 3.86
101 102 1.006813 AACCTGCCCATATTGGTGGA 58.993 50.000 11.92 0.00 42.02 4.02
102 103 1.113788 CAACCTGCCCATATTGGTGG 58.886 55.000 0.00 0.81 35.17 4.61
103 104 1.113788 CCAACCTGCCCATATTGGTG 58.886 55.000 0.00 0.00 37.42 4.17
104 105 3.613661 CCAACCTGCCCATATTGGT 57.386 52.632 0.00 0.00 37.42 3.67
105 106 2.306847 GTACCAACCTGCCCATATTGG 58.693 52.381 0.33 0.33 45.91 3.16
106 107 1.946768 CGTACCAACCTGCCCATATTG 59.053 52.381 0.00 0.00 0.00 1.90
107 108 1.133915 CCGTACCAACCTGCCCATATT 60.134 52.381 0.00 0.00 0.00 1.28
108 109 0.472471 CCGTACCAACCTGCCCATAT 59.528 55.000 0.00 0.00 0.00 1.78
109 110 0.910566 ACCGTACCAACCTGCCCATA 60.911 55.000 0.00 0.00 0.00 2.74
110 111 0.910566 TACCGTACCAACCTGCCCAT 60.911 55.000 0.00 0.00 0.00 4.00
111 112 1.535930 TACCGTACCAACCTGCCCA 60.536 57.895 0.00 0.00 0.00 5.36
112 113 1.078918 GTACCGTACCAACCTGCCC 60.079 63.158 0.00 0.00 0.00 5.36
113 114 0.035176 TTGTACCGTACCAACCTGCC 59.965 55.000 6.23 0.00 0.00 4.85
114 115 1.802365 CTTTGTACCGTACCAACCTGC 59.198 52.381 6.23 0.00 0.00 4.85
115 116 1.802365 GCTTTGTACCGTACCAACCTG 59.198 52.381 6.23 0.00 0.00 4.00
116 117 1.271001 GGCTTTGTACCGTACCAACCT 60.271 52.381 6.23 0.00 0.00 3.50
117 118 1.159285 GGCTTTGTACCGTACCAACC 58.841 55.000 6.23 3.20 0.00 3.77
118 119 1.881591 TGGCTTTGTACCGTACCAAC 58.118 50.000 6.23 0.00 0.00 3.77
119 120 2.158784 AGTTGGCTTTGTACCGTACCAA 60.159 45.455 6.23 0.91 34.91 3.67
120 121 1.417145 AGTTGGCTTTGTACCGTACCA 59.583 47.619 6.23 0.00 0.00 3.25
121 122 2.174363 AGTTGGCTTTGTACCGTACC 57.826 50.000 6.23 0.00 0.00 3.34
122 123 3.652274 TGTAGTTGGCTTTGTACCGTAC 58.348 45.455 1.40 1.40 0.00 3.67
123 124 3.321682 ACTGTAGTTGGCTTTGTACCGTA 59.678 43.478 0.00 0.00 0.00 4.02
124 125 2.103601 ACTGTAGTTGGCTTTGTACCGT 59.896 45.455 0.00 0.00 0.00 4.83
125 126 2.735134 GACTGTAGTTGGCTTTGTACCG 59.265 50.000 0.00 0.00 0.00 4.02
126 127 3.072211 GGACTGTAGTTGGCTTTGTACC 58.928 50.000 0.00 0.00 0.00 3.34
127 128 3.072211 GGGACTGTAGTTGGCTTTGTAC 58.928 50.000 0.00 0.00 0.00 2.90
128 129 2.976882 AGGGACTGTAGTTGGCTTTGTA 59.023 45.455 0.00 0.00 37.18 2.41
129 130 1.774856 AGGGACTGTAGTTGGCTTTGT 59.225 47.619 0.00 0.00 37.18 2.83
130 131 2.039084 AGAGGGACTGTAGTTGGCTTTG 59.961 50.000 0.00 0.00 41.55 2.77
131 132 2.303311 GAGAGGGACTGTAGTTGGCTTT 59.697 50.000 0.00 0.00 41.55 3.51
132 133 1.903183 GAGAGGGACTGTAGTTGGCTT 59.097 52.381 0.00 0.00 41.55 4.35
133 134 1.077993 AGAGAGGGACTGTAGTTGGCT 59.922 52.381 0.00 0.00 41.55 4.75
134 135 1.205893 CAGAGAGGGACTGTAGTTGGC 59.794 57.143 0.00 0.00 41.55 4.52
135 136 1.205893 GCAGAGAGGGACTGTAGTTGG 59.794 57.143 0.00 0.00 41.55 3.77
136 137 1.895798 TGCAGAGAGGGACTGTAGTTG 59.104 52.381 0.00 0.00 41.55 3.16
137 138 2.310779 TGCAGAGAGGGACTGTAGTT 57.689 50.000 0.00 0.00 41.55 2.24
138 139 2.541233 ATGCAGAGAGGGACTGTAGT 57.459 50.000 0.00 0.00 41.55 2.73
139 140 3.561143 AGTATGCAGAGAGGGACTGTAG 58.439 50.000 0.00 0.00 41.55 2.74
140 141 3.671740 AGTATGCAGAGAGGGACTGTA 57.328 47.619 0.00 0.00 41.55 2.74
141 142 2.541233 AGTATGCAGAGAGGGACTGT 57.459 50.000 0.00 0.00 41.55 3.55
142 143 2.102252 GGAAGTATGCAGAGAGGGACTG 59.898 54.545 0.00 0.00 41.55 3.51
144 145 2.111384 TGGAAGTATGCAGAGAGGGAC 58.889 52.381 0.00 0.00 0.00 4.46
145 146 2.501723 GTTGGAAGTATGCAGAGAGGGA 59.498 50.000 0.00 0.00 0.00 4.20
146 147 2.503356 AGTTGGAAGTATGCAGAGAGGG 59.497 50.000 0.00 0.00 0.00 4.30
147 148 3.450457 AGAGTTGGAAGTATGCAGAGAGG 59.550 47.826 0.00 0.00 0.00 3.69
148 149 4.431809 CAGAGTTGGAAGTATGCAGAGAG 58.568 47.826 0.00 0.00 0.00 3.20
149 150 3.368843 GCAGAGTTGGAAGTATGCAGAGA 60.369 47.826 8.59 0.00 43.93 3.10
150 151 2.935201 GCAGAGTTGGAAGTATGCAGAG 59.065 50.000 8.59 0.00 43.93 3.35
151 152 2.568956 AGCAGAGTTGGAAGTATGCAGA 59.431 45.455 14.49 0.00 46.19 4.26
152 153 2.983229 AGCAGAGTTGGAAGTATGCAG 58.017 47.619 14.49 0.00 46.19 4.41
153 154 3.076621 CAAGCAGAGTTGGAAGTATGCA 58.923 45.455 14.49 0.00 46.19 3.96
154 155 3.338249 TCAAGCAGAGTTGGAAGTATGC 58.662 45.455 5.81 5.81 44.62 3.14
155 156 4.394300 CCTTCAAGCAGAGTTGGAAGTATG 59.606 45.833 0.00 0.00 0.00 2.39
156 157 4.583871 CCTTCAAGCAGAGTTGGAAGTAT 58.416 43.478 0.00 0.00 0.00 2.12
157 158 3.807209 GCCTTCAAGCAGAGTTGGAAGTA 60.807 47.826 0.00 0.00 0.00 2.24
158 159 2.856222 CCTTCAAGCAGAGTTGGAAGT 58.144 47.619 0.00 0.00 0.00 3.01
159 160 1.538950 GCCTTCAAGCAGAGTTGGAAG 59.461 52.381 0.00 0.00 0.00 3.46
160 161 1.143684 AGCCTTCAAGCAGAGTTGGAA 59.856 47.619 0.00 0.00 34.23 3.53
161 162 0.767375 AGCCTTCAAGCAGAGTTGGA 59.233 50.000 0.00 0.00 34.23 3.53
162 163 2.479566 TAGCCTTCAAGCAGAGTTGG 57.520 50.000 0.00 0.00 34.23 3.77
163 164 3.755378 ACAATAGCCTTCAAGCAGAGTTG 59.245 43.478 0.00 0.00 34.23 3.16
164 165 4.006319 GACAATAGCCTTCAAGCAGAGTT 58.994 43.478 0.00 0.00 34.23 3.01
165 166 3.008375 TGACAATAGCCTTCAAGCAGAGT 59.992 43.478 0.00 0.00 34.23 3.24
166 167 3.373439 GTGACAATAGCCTTCAAGCAGAG 59.627 47.826 0.00 0.00 34.23 3.35
167 168 3.244526 TGTGACAATAGCCTTCAAGCAGA 60.245 43.478 0.00 0.00 34.23 4.26
168 169 3.076621 TGTGACAATAGCCTTCAAGCAG 58.923 45.455 0.00 0.00 34.23 4.24
169 170 3.138884 TGTGACAATAGCCTTCAAGCA 57.861 42.857 0.00 0.00 34.23 3.91
170 171 3.441572 ACATGTGACAATAGCCTTCAAGC 59.558 43.478 0.00 0.00 0.00 4.01
171 172 4.696877 TCACATGTGACAATAGCCTTCAAG 59.303 41.667 24.56 0.00 34.14 3.02
172 173 4.650734 TCACATGTGACAATAGCCTTCAA 58.349 39.130 24.56 0.00 34.14 2.69
173 174 4.256110 CTCACATGTGACAATAGCCTTCA 58.744 43.478 24.56 0.00 35.46 3.02
174 175 3.064545 GCTCACATGTGACAATAGCCTTC 59.935 47.826 24.56 0.00 35.46 3.46
175 176 3.012518 GCTCACATGTGACAATAGCCTT 58.987 45.455 24.56 0.00 35.46 4.35
176 177 2.026915 TGCTCACATGTGACAATAGCCT 60.027 45.455 24.56 0.00 35.46 4.58
177 178 2.353889 CTGCTCACATGTGACAATAGCC 59.646 50.000 24.56 10.87 35.46 3.93
178 179 2.223203 GCTGCTCACATGTGACAATAGC 60.223 50.000 24.56 23.73 35.46 2.97
179 180 3.063588 CAGCTGCTCACATGTGACAATAG 59.936 47.826 24.56 18.52 35.46 1.73
180 181 3.004862 CAGCTGCTCACATGTGACAATA 58.995 45.455 24.56 9.88 35.46 1.90
181 182 1.810755 CAGCTGCTCACATGTGACAAT 59.189 47.619 24.56 14.54 35.46 2.71
182 183 1.232119 CAGCTGCTCACATGTGACAA 58.768 50.000 24.56 14.05 35.46 3.18
183 184 1.232621 GCAGCTGCTCACATGTGACA 61.233 55.000 31.33 22.83 38.21 3.58
184 185 1.500844 GCAGCTGCTCACATGTGAC 59.499 57.895 31.33 19.87 38.21 3.67
185 186 1.673337 GGCAGCTGCTCACATGTGA 60.673 57.895 35.82 26.33 41.70 3.58
186 187 0.392060 TAGGCAGCTGCTCACATGTG 60.392 55.000 35.82 20.18 41.70 3.21
187 188 0.392193 GTAGGCAGCTGCTCACATGT 60.392 55.000 35.82 15.22 41.70 3.21
188 189 0.392060 TGTAGGCAGCTGCTCACATG 60.392 55.000 35.82 0.00 41.70 3.21
189 190 0.545171 ATGTAGGCAGCTGCTCACAT 59.455 50.000 33.78 33.78 39.09 3.21
190 191 0.392060 CATGTAGGCAGCTGCTCACA 60.392 55.000 32.89 32.89 41.70 3.58
191 192 0.107993 TCATGTAGGCAGCTGCTCAC 60.108 55.000 35.82 30.35 41.70 3.51
192 193 0.835276 ATCATGTAGGCAGCTGCTCA 59.165 50.000 35.82 29.24 41.70 4.26
193 194 1.227639 CATCATGTAGGCAGCTGCTC 58.772 55.000 35.82 25.61 41.70 4.26
194 195 0.545171 ACATCATGTAGGCAGCTGCT 59.455 50.000 35.82 23.99 41.70 4.24
195 196 2.245159 TACATCATGTAGGCAGCTGC 57.755 50.000 30.88 30.88 41.14 5.25
196 197 5.565592 TTTTTACATCATGTAGGCAGCTG 57.434 39.130 10.11 10.11 33.92 4.24
197 198 5.887598 TCATTTTTACATCATGTAGGCAGCT 59.112 36.000 0.00 0.00 33.92 4.24
198 199 6.135290 TCATTTTTACATCATGTAGGCAGC 57.865 37.500 0.00 0.00 33.92 5.25
199 200 6.039047 AGCTCATTTTTACATCATGTAGGCAG 59.961 38.462 0.00 0.00 33.92 4.85
200 201 5.887598 AGCTCATTTTTACATCATGTAGGCA 59.112 36.000 0.00 0.00 33.92 4.75
201 202 6.382869 AGCTCATTTTTACATCATGTAGGC 57.617 37.500 0.00 0.00 33.92 3.93
202 203 7.420800 GGAAGCTCATTTTTACATCATGTAGG 58.579 38.462 0.00 0.00 33.92 3.18
203 204 7.284034 AGGGAAGCTCATTTTTACATCATGTAG 59.716 37.037 0.00 0.00 33.92 2.74
204 205 7.118723 AGGGAAGCTCATTTTTACATCATGTA 58.881 34.615 0.00 0.00 0.00 2.29
205 206 5.954150 AGGGAAGCTCATTTTTACATCATGT 59.046 36.000 0.00 0.00 0.00 3.21
206 207 6.320672 AGAGGGAAGCTCATTTTTACATCATG 59.679 38.462 0.00 0.00 0.00 3.07
207 208 6.430007 AGAGGGAAGCTCATTTTTACATCAT 58.570 36.000 0.00 0.00 0.00 2.45
208 209 5.819991 AGAGGGAAGCTCATTTTTACATCA 58.180 37.500 0.00 0.00 0.00 3.07
209 210 7.095439 CGATAGAGGGAAGCTCATTTTTACATC 60.095 40.741 0.00 0.00 39.76 3.06
210 211 6.708054 CGATAGAGGGAAGCTCATTTTTACAT 59.292 38.462 0.00 0.00 39.76 2.29
211 212 6.049149 CGATAGAGGGAAGCTCATTTTTACA 58.951 40.000 0.00 0.00 39.76 2.41
212 213 6.049790 ACGATAGAGGGAAGCTCATTTTTAC 58.950 40.000 0.00 0.00 41.38 2.01
213 214 6.098409 AGACGATAGAGGGAAGCTCATTTTTA 59.902 38.462 0.00 0.00 41.38 1.52
214 215 5.104259 ACGATAGAGGGAAGCTCATTTTT 57.896 39.130 0.00 0.00 41.38 1.94
215 216 4.407296 AGACGATAGAGGGAAGCTCATTTT 59.593 41.667 0.00 0.00 41.38 1.82
216 217 3.964031 AGACGATAGAGGGAAGCTCATTT 59.036 43.478 0.00 0.00 41.38 2.32
217 218 3.571590 AGACGATAGAGGGAAGCTCATT 58.428 45.455 0.00 0.00 41.38 2.57
218 219 3.153919 GAGACGATAGAGGGAAGCTCAT 58.846 50.000 0.00 0.00 41.38 2.90
219 220 2.173782 AGAGACGATAGAGGGAAGCTCA 59.826 50.000 0.00 0.00 41.38 4.26
220 221 2.858745 AGAGACGATAGAGGGAAGCTC 58.141 52.381 0.00 0.00 41.38 4.09
221 222 4.394729 CTTAGAGACGATAGAGGGAAGCT 58.605 47.826 0.00 0.00 41.38 3.74
222 223 3.504520 CCTTAGAGACGATAGAGGGAAGC 59.495 52.174 0.00 0.00 41.38 3.86
223 224 4.758165 GTCCTTAGAGACGATAGAGGGAAG 59.242 50.000 0.00 0.00 41.38 3.46
224 225 4.446023 GGTCCTTAGAGACGATAGAGGGAA 60.446 50.000 0.00 0.00 37.66 3.97
225 226 3.072768 GGTCCTTAGAGACGATAGAGGGA 59.927 52.174 0.00 0.00 37.66 4.20
226 227 3.181442 TGGTCCTTAGAGACGATAGAGGG 60.181 52.174 0.00 0.00 37.66 4.30
227 228 4.088056 TGGTCCTTAGAGACGATAGAGG 57.912 50.000 0.00 0.00 37.66 3.69
228 229 4.698304 GGATGGTCCTTAGAGACGATAGAG 59.302 50.000 0.00 0.00 35.61 2.43
229 230 4.506979 GGGATGGTCCTTAGAGACGATAGA 60.507 50.000 0.00 0.00 35.61 1.98
230 231 3.759618 GGGATGGTCCTTAGAGACGATAG 59.240 52.174 0.00 0.00 35.61 2.08
231 232 3.764218 GGGATGGTCCTTAGAGACGATA 58.236 50.000 0.00 0.00 35.61 2.92
232 233 2.599677 GGGATGGTCCTTAGAGACGAT 58.400 52.381 0.00 0.00 37.84 3.73
233 234 1.749635 CGGGATGGTCCTTAGAGACGA 60.750 57.143 0.00 0.00 37.66 4.20
234 235 0.669077 CGGGATGGTCCTTAGAGACG 59.331 60.000 0.00 0.00 37.66 4.18
235 236 0.389757 GCGGGATGGTCCTTAGAGAC 59.610 60.000 0.00 0.00 36.57 3.36
236 237 0.759436 GGCGGGATGGTCCTTAGAGA 60.759 60.000 0.00 0.00 36.57 3.10
237 238 1.749033 GGCGGGATGGTCCTTAGAG 59.251 63.158 0.00 0.00 36.57 2.43
238 239 1.764854 GGGCGGGATGGTCCTTAGA 60.765 63.158 0.00 0.00 36.57 2.10
239 240 2.819284 GGGGCGGGATGGTCCTTAG 61.819 68.421 0.00 0.00 36.57 2.18
240 241 2.770904 GGGGCGGGATGGTCCTTA 60.771 66.667 0.00 0.00 36.57 2.69
246 247 4.820744 CAACAGGGGGCGGGATGG 62.821 72.222 0.00 0.00 0.00 3.51
254 255 3.673484 CACAAGCGCAACAGGGGG 61.673 66.667 11.47 0.00 0.00 5.40
255 256 3.673484 CCACAAGCGCAACAGGGG 61.673 66.667 11.47 2.15 0.00 4.79
256 257 4.347453 GCCACAAGCGCAACAGGG 62.347 66.667 11.47 5.38 0.00 4.45
257 258 4.347453 GGCCACAAGCGCAACAGG 62.347 66.667 11.47 7.45 45.17 4.00
258 259 3.289834 AGGCCACAAGCGCAACAG 61.290 61.111 11.47 0.00 45.17 3.16
259 260 2.949705 TACAGGCCACAAGCGCAACA 62.950 55.000 11.47 0.00 45.17 3.33
260 261 2.258013 TACAGGCCACAAGCGCAAC 61.258 57.895 11.47 0.00 45.17 4.17
261 262 2.112087 TACAGGCCACAAGCGCAA 59.888 55.556 11.47 0.00 45.17 4.85
262 263 2.668212 GTACAGGCCACAAGCGCA 60.668 61.111 11.47 0.00 45.17 6.09
263 264 1.791103 TTTGTACAGGCCACAAGCGC 61.791 55.000 5.01 0.00 45.17 5.92
264 265 0.238289 CTTTGTACAGGCCACAAGCG 59.762 55.000 5.01 0.00 45.17 4.68
265 266 0.039165 GCTTTGTACAGGCCACAAGC 60.039 55.000 5.01 10.93 37.22 4.01
266 267 1.609208 AGCTTTGTACAGGCCACAAG 58.391 50.000 5.01 8.38 37.22 3.16
267 268 2.500229 GTAGCTTTGTACAGGCCACAA 58.500 47.619 5.01 3.86 34.18 3.33
268 269 1.271163 GGTAGCTTTGTACAGGCCACA 60.271 52.381 5.01 0.00 0.00 4.17
269 270 1.271163 TGGTAGCTTTGTACAGGCCAC 60.271 52.381 5.01 13.40 0.00 5.01
270 271 1.060729 TGGTAGCTTTGTACAGGCCA 58.939 50.000 5.01 8.12 0.00 5.36
271 272 2.289565 GATGGTAGCTTTGTACAGGCC 58.710 52.381 15.95 0.00 0.00 5.19
272 273 1.933853 CGATGGTAGCTTTGTACAGGC 59.066 52.381 12.93 12.93 0.00 4.85
273 274 2.093658 ACCGATGGTAGCTTTGTACAGG 60.094 50.000 0.00 0.00 32.11 4.00
274 275 3.247006 ACCGATGGTAGCTTTGTACAG 57.753 47.619 0.00 0.00 32.11 2.74
275 276 5.105269 TGAATACCGATGGTAGCTTTGTACA 60.105 40.000 0.00 0.00 41.83 2.90
276 277 5.353938 TGAATACCGATGGTAGCTTTGTAC 58.646 41.667 0.00 0.00 41.83 2.90
277 278 5.597806 CTGAATACCGATGGTAGCTTTGTA 58.402 41.667 0.00 0.00 41.83 2.41
278 279 4.442706 CTGAATACCGATGGTAGCTTTGT 58.557 43.478 0.00 0.00 41.83 2.83
279 280 3.248602 GCTGAATACCGATGGTAGCTTTG 59.751 47.826 0.00 0.00 41.83 2.77
280 281 3.134804 AGCTGAATACCGATGGTAGCTTT 59.865 43.478 5.39 0.00 39.88 3.51
281 282 2.700897 AGCTGAATACCGATGGTAGCTT 59.299 45.455 5.39 0.00 39.88 3.74
282 283 2.320781 AGCTGAATACCGATGGTAGCT 58.679 47.619 5.39 5.39 41.83 3.32
283 284 2.821991 AGCTGAATACCGATGGTAGC 57.178 50.000 1.79 1.45 41.83 3.58
284 285 4.442706 ACAAAGCTGAATACCGATGGTAG 58.557 43.478 1.79 0.00 41.83 3.18
285 286 4.439057 GACAAAGCTGAATACCGATGGTA 58.561 43.478 0.00 0.00 42.80 3.25
286 287 3.270877 GACAAAGCTGAATACCGATGGT 58.729 45.455 0.00 0.00 40.16 3.55
287 288 2.614057 GGACAAAGCTGAATACCGATGG 59.386 50.000 0.00 0.00 0.00 3.51
288 289 3.270027 TGGACAAAGCTGAATACCGATG 58.730 45.455 0.00 0.00 0.00 3.84
289 290 3.535561 CTGGACAAAGCTGAATACCGAT 58.464 45.455 0.00 0.00 0.00 4.18
290 291 2.935238 GCTGGACAAAGCTGAATACCGA 60.935 50.000 0.00 0.00 40.20 4.69
291 292 1.398390 GCTGGACAAAGCTGAATACCG 59.602 52.381 0.00 0.00 40.20 4.02
292 293 1.745653 GGCTGGACAAAGCTGAATACC 59.254 52.381 0.00 0.00 43.06 2.73
299 300 4.269523 TGCCGGCTGGACAAAGCT 62.270 61.111 29.70 0.00 43.06 3.74
300 301 3.741476 CTGCCGGCTGGACAAAGC 61.741 66.667 29.70 0.00 42.75 3.51
301 302 3.058160 CCTGCCGGCTGGACAAAG 61.058 66.667 40.93 22.19 37.49 2.77
302 303 4.659172 CCCTGCCGGCTGGACAAA 62.659 66.667 43.88 16.80 37.49 2.83
324 325 1.654023 GCAGCCGTTCCAATGGGTAC 61.654 60.000 0.00 0.00 43.57 3.34
325 326 1.377987 GCAGCCGTTCCAATGGGTA 60.378 57.895 0.00 0.00 43.57 3.69
326 327 2.676471 GCAGCCGTTCCAATGGGT 60.676 61.111 0.00 0.00 46.16 4.51
327 328 2.361610 AGCAGCCGTTCCAATGGG 60.362 61.111 0.00 0.00 35.56 4.00
328 329 1.675310 TGAGCAGCCGTTCCAATGG 60.675 57.895 0.00 0.00 38.15 3.16
329 330 1.236616 TGTGAGCAGCCGTTCCAATG 61.237 55.000 0.00 0.00 0.00 2.82
330 331 0.322816 ATGTGAGCAGCCGTTCCAAT 60.323 50.000 0.00 0.00 0.00 3.16
331 332 0.537143 AATGTGAGCAGCCGTTCCAA 60.537 50.000 0.00 0.00 0.00 3.53
332 333 0.537143 AAATGTGAGCAGCCGTTCCA 60.537 50.000 0.00 0.00 0.00 3.53
333 334 0.169009 GAAATGTGAGCAGCCGTTCC 59.831 55.000 0.00 0.00 0.00 3.62
334 335 0.874390 TGAAATGTGAGCAGCCGTTC 59.126 50.000 0.00 0.00 0.00 3.95
335 336 0.877071 CTGAAATGTGAGCAGCCGTT 59.123 50.000 0.00 0.00 0.00 4.44
336 337 0.250467 ACTGAAATGTGAGCAGCCGT 60.250 50.000 0.00 0.00 33.03 5.68
337 338 0.445436 GACTGAAATGTGAGCAGCCG 59.555 55.000 0.00 0.00 33.03 5.52
338 339 1.527034 TGACTGAAATGTGAGCAGCC 58.473 50.000 0.00 0.00 33.03 4.85
339 340 3.562505 CTTTGACTGAAATGTGAGCAGC 58.437 45.455 0.00 0.00 33.03 5.25
340 341 3.252701 AGCTTTGACTGAAATGTGAGCAG 59.747 43.478 0.00 0.00 35.81 4.24
341 342 3.216800 AGCTTTGACTGAAATGTGAGCA 58.783 40.909 0.00 0.00 0.00 4.26
342 343 3.911661 AGCTTTGACTGAAATGTGAGC 57.088 42.857 0.00 0.00 0.00 4.26
344 345 8.817100 CGTATATTAGCTTTGACTGAAATGTGA 58.183 33.333 0.00 0.00 0.00 3.58
345 346 8.064222 CCGTATATTAGCTTTGACTGAAATGTG 58.936 37.037 0.00 0.00 0.00 3.21
346 347 7.985184 TCCGTATATTAGCTTTGACTGAAATGT 59.015 33.333 0.00 0.00 0.00 2.71
347 348 8.365399 TCCGTATATTAGCTTTGACTGAAATG 57.635 34.615 0.00 0.00 0.00 2.32
348 349 8.204836 ACTCCGTATATTAGCTTTGACTGAAAT 58.795 33.333 0.00 0.00 0.00 2.17
349 350 7.553334 ACTCCGTATATTAGCTTTGACTGAAA 58.447 34.615 0.00 0.00 0.00 2.69
350 351 7.108841 ACTCCGTATATTAGCTTTGACTGAA 57.891 36.000 0.00 0.00 0.00 3.02
351 352 6.710597 ACTCCGTATATTAGCTTTGACTGA 57.289 37.500 0.00 0.00 0.00 3.41
352 353 8.867112 TTTACTCCGTATATTAGCTTTGACTG 57.133 34.615 0.00 0.00 0.00 3.51
419 420 6.151312 CAGTCCTCTTGTCTAGCTAGTTACAA 59.849 42.308 20.75 20.75 0.00 2.41
437 438 3.679083 CGGTAAAAGGGATGTCAGTCCTC 60.679 52.174 0.00 0.00 38.38 3.71
442 443 3.053831 ACACGGTAAAAGGGATGTCAG 57.946 47.619 0.00 0.00 0.00 3.51
448 449 2.743126 CGCAATAACACGGTAAAAGGGA 59.257 45.455 0.00 0.00 0.00 4.20
451 452 4.392619 TGTCGCAATAACACGGTAAAAG 57.607 40.909 0.00 0.00 0.00 2.27
464 465 4.829064 ACATAAACACACTTGTCGCAAT 57.171 36.364 0.00 0.00 33.55 3.56
468 469 5.197549 CACAGAACATAAACACACTTGTCG 58.802 41.667 0.00 0.00 33.55 4.35
482 483 2.831685 TTCACCTACGCACAGAACAT 57.168 45.000 0.00 0.00 0.00 2.71
503 504 7.675062 ACTCCTCACTATGAATAGCCTTAATG 58.325 38.462 0.00 0.00 33.68 1.90
504 505 7.863901 ACTCCTCACTATGAATAGCCTTAAT 57.136 36.000 0.00 0.00 33.68 1.40
509 510 6.842437 TGATACTCCTCACTATGAATAGCC 57.158 41.667 0.00 0.00 33.68 3.93
514 515 8.947115 CACGTATATGATACTCCTCACTATGAA 58.053 37.037 0.00 0.00 0.00 2.57
633 637 7.209340 AGAGGGGGTTTTAGAGTAATTTAGG 57.791 40.000 0.00 0.00 0.00 2.69
651 655 4.923415 ACCAGACAATTAAAGAAGAGGGG 58.077 43.478 0.00 0.00 0.00 4.79
748 754 0.036388 AGCGATGGCGGAGAAAGAAA 60.036 50.000 0.00 0.00 46.35 2.52
749 755 0.036388 AAGCGATGGCGGAGAAAGAA 60.036 50.000 0.00 0.00 46.35 2.52
804 810 4.451150 TGCTGTGATCCCGCCGAC 62.451 66.667 0.00 0.00 0.00 4.79
859 868 1.276989 TCGTTGGGTAGCGAAGGATTT 59.723 47.619 7.80 0.00 36.59 2.17
893 902 2.264480 CGGATGGGCTCACGTCAA 59.736 61.111 0.00 0.00 0.00 3.18
965 974 1.373570 CTCTTTGCGGGAGGCTTAAG 58.626 55.000 0.00 0.00 44.05 1.85
1213 1229 2.920384 GGGGAGGGAGATCGAGGC 60.920 72.222 0.00 0.00 0.00 4.70
1242 1258 1.366679 GGGACGGAAAAGGATCGAAC 58.633 55.000 0.00 0.00 0.00 3.95
1406 1423 1.753078 TAGATGCGGTCGGTGCTCT 60.753 57.895 0.00 0.00 0.00 4.09
1407 1424 1.589196 GTAGATGCGGTCGGTGCTC 60.589 63.158 0.00 0.00 0.00 4.26
1408 1425 2.284798 CTGTAGATGCGGTCGGTGCT 62.285 60.000 0.00 0.00 0.00 4.40
1409 1426 1.878522 CTGTAGATGCGGTCGGTGC 60.879 63.158 0.00 0.00 0.00 5.01
1410 1427 0.172578 TTCTGTAGATGCGGTCGGTG 59.827 55.000 0.00 0.00 0.00 4.94
1490 1508 1.564348 AGGTCAAAACAGGACACAGGT 59.436 47.619 0.00 0.00 37.00 4.00
1514 1532 1.130054 TTGCCTCCAGCTTCTCCTGT 61.130 55.000 0.00 0.00 44.23 4.00
1667 1685 2.581354 CCTCTCGCCAGGTTCCAG 59.419 66.667 0.00 0.00 0.00 3.86
1940 2082 9.449719 TCCTTTCATAAATCTCAAGTTAACTCC 57.550 33.333 8.95 0.00 0.00 3.85
2180 2328 5.592104 TCCTTGATAACGCTATCTGAACA 57.408 39.130 7.32 0.00 35.79 3.18
2444 2593 1.202245 GCGCTGTGTTGTTCCAGAAAA 60.202 47.619 0.00 0.00 0.00 2.29
2649 2798 2.062971 AAAGCATCTCGATTGGCCAT 57.937 45.000 6.09 0.00 0.00 4.40
2745 2894 8.335532 TGGTGATGAAACAAGGTATTAAAGAG 57.664 34.615 0.00 0.00 0.00 2.85
3071 3461 4.319177 AGCACTTCTGTCACAGGTTATTC 58.681 43.478 4.57 0.00 31.51 1.75
3086 3476 5.362556 TTGCTTGACTAAATGAGCACTTC 57.637 39.130 0.00 0.00 44.07 3.01
3545 3937 8.519526 ACAGAAACAATTGTAAGTCAAAAGACA 58.480 29.630 12.39 0.00 39.62 3.41
3930 4322 8.251383 AGAATAGGAGTTAATACTTAGCAGCA 57.749 34.615 0.00 0.00 33.84 4.41
3949 4341 5.718146 TGCTTCTCACTCTGACAAGAATAG 58.282 41.667 0.00 0.00 25.68 1.73
4021 4413 2.873133 AGCATACTCGAAGGTAGCAC 57.127 50.000 0.00 0.00 0.00 4.40
4533 4925 1.302511 GTTGGCATCCACAGGTCGT 60.303 57.895 0.00 0.00 30.78 4.34
4572 4964 4.771590 TCAGCAGATTGCCAAAAAGTAG 57.228 40.909 0.00 0.00 46.52 2.57
4737 5129 6.071784 TGCAGAAGAAGCATAATCATGTTTGT 60.072 34.615 0.00 0.00 35.92 2.83
4922 5314 1.751927 CATCCCCAGAAGGCAGTGC 60.752 63.158 6.55 6.55 0.00 4.40
5052 5444 4.889832 AAAGGAATATCTGAAGCAAGCG 57.110 40.909 0.00 0.00 0.00 4.68
5095 5487 4.709886 TCACCAATCTCCGAAGTAGAATGA 59.290 41.667 0.00 0.00 23.22 2.57
5908 6317 3.195825 CCCTAAACCACTCAGACTTCGAT 59.804 47.826 0.00 0.00 0.00 3.59
5911 6320 2.638363 ACCCCTAAACCACTCAGACTTC 59.362 50.000 0.00 0.00 0.00 3.01
5941 6351 6.953520 TGTCCTTAATTCATGGGAAAATGACT 59.046 34.615 0.00 0.00 36.31 3.41
6016 6426 7.041107 TCCCTTTTTGCTCAATAATATTGCAC 58.959 34.615 8.06 3.65 33.13 4.57
6225 6635 5.092781 GCGTAACAATACCAGTGGAAAATG 58.907 41.667 18.40 11.38 0.00 2.32
6647 7058 9.778741 TTAGTCTTATGATCACTTTCACTTTGT 57.221 29.630 0.00 0.00 0.00 2.83
6667 7078 8.588290 AAGAGAACTGTAGATGTCATTAGTCT 57.412 34.615 0.00 0.00 0.00 3.24
6742 7156 7.594758 TCTTTGCATTTGCTTACACTAATGAAC 59.405 33.333 3.94 0.00 42.66 3.18
6762 7176 3.243535 CCAGGGTCAAGTTCTTTCTTTGC 60.244 47.826 0.00 0.00 0.00 3.68
6771 7185 2.206576 ATGAAGCCAGGGTCAAGTTC 57.793 50.000 0.00 0.00 0.00 3.01
7363 7777 7.559335 AATTAGCCAAAAGAAGAAAGGGAAT 57.441 32.000 0.00 0.00 0.00 3.01
7404 7821 2.086869 CTTATGCACAGGGTTCTGGTG 58.913 52.381 0.00 0.00 44.99 4.17
7703 8122 1.075374 ACCTTTGCATAGCAGTTGGGA 59.925 47.619 0.00 0.00 40.61 4.37
7733 8152 3.125146 GCATGAAGCGACATTGTCTTACA 59.875 43.478 14.54 9.45 0.00 2.41
8054 8474 6.425210 AGTTTACAGCAGCCTATATCATCA 57.575 37.500 0.00 0.00 0.00 3.07
8088 8511 2.635915 ACTGGGATAGACGTTTGGTGAA 59.364 45.455 0.00 0.00 0.00 3.18
8089 8512 2.253610 ACTGGGATAGACGTTTGGTGA 58.746 47.619 0.00 0.00 0.00 4.02
8090 8513 2.762535 ACTGGGATAGACGTTTGGTG 57.237 50.000 0.00 0.00 0.00 4.17
8091 8514 2.635915 TGAACTGGGATAGACGTTTGGT 59.364 45.455 0.00 0.00 0.00 3.67
8092 8515 3.328382 TGAACTGGGATAGACGTTTGG 57.672 47.619 0.00 0.00 0.00 3.28
8098 8521 7.016268 TCCCTTGTATAATGAACTGGGATAGAC 59.984 40.741 0.00 0.00 36.29 2.59
8165 8588 5.391629 GCTTGGTACTTGGGACTTTATTTCG 60.392 44.000 0.00 0.00 0.00 3.46
8231 8654 7.044771 GCATGTTCACACACAATTATGTTATCG 60.045 37.037 0.00 0.00 37.82 2.92
8280 8707 6.738453 GCAACTCCAGTTTGAAAACCATGTAT 60.738 38.462 2.34 0.00 39.71 2.29
8360 8787 6.599638 CCTTCCCTACCAAAAGATAAGACTTG 59.400 42.308 0.00 0.00 0.00 3.16
8381 8808 7.696453 TCGCGAATAAAATTCATCTTTTCCTTC 59.304 33.333 6.20 0.00 31.15 3.46
8407 8834 8.989980 GCACAATACAACTAAGAGAGTTTAAGT 58.010 33.333 0.00 0.00 46.79 2.24
8467 8894 4.215399 GCTGGTAATGTGTCAAGCAAGTTA 59.785 41.667 0.00 0.00 0.00 2.24
8603 9030 3.515602 AGTGACTGGCTTTCCATCTTT 57.484 42.857 0.00 0.00 42.51 2.52
8611 9038 6.183360 GGTTTTACAAGTTAGTGACTGGCTTT 60.183 38.462 0.00 0.00 39.00 3.51
8816 9244 4.999950 AGCAAATGAAGACTCCTGTAACAG 59.000 41.667 0.00 0.00 0.00 3.16
8856 9284 0.811219 TGCCCGAGAGAAATGCGATG 60.811 55.000 0.00 0.00 0.00 3.84
8886 9314 2.672961 TGCCTCTTAATGACACTCGG 57.327 50.000 0.00 0.00 0.00 4.63
8931 9359 2.124278 GGCGGGGAGTGGAATTCC 60.124 66.667 18.17 18.17 42.98 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.