Multiple sequence alignment - TraesCS4A01G120100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G120100 chr4A 100.000 3883 0 0 1 3883 147654817 147650935 0.000000e+00 7171.0
1 TraesCS4A01G120100 chr4A 79.359 1061 177 27 1299 2347 148126606 148127636 0.000000e+00 708.0
2 TraesCS4A01G120100 chr4A 88.462 104 12 0 9 112 148120797 148120694 4.070000e-25 126.0
3 TraesCS4A01G120100 chr4D 95.100 2796 95 14 592 3375 323602600 323605365 0.000000e+00 4366.0
4 TraesCS4A01G120100 chr4D 96.414 502 17 1 3383 3883 323605537 323606038 0.000000e+00 826.0
5 TraesCS4A01G120100 chr4D 79.037 1059 184 22 1299 2347 323583319 323582289 0.000000e+00 691.0
6 TraesCS4A01G120100 chr4D 93.711 159 8 1 386 544 323600754 323600910 1.800000e-58 237.0
7 TraesCS4A01G120100 chr4B 93.756 2146 89 13 592 2711 404123372 404125498 0.000000e+00 3179.0
8 TraesCS4A01G120100 chr4B 94.686 621 23 2 2756 3374 404125599 404126211 0.000000e+00 955.0
9 TraesCS4A01G120100 chr4B 95.874 412 17 0 3472 3883 404127213 404127624 0.000000e+00 667.0
10 TraesCS4A01G120100 chr4B 92.344 209 15 1 386 593 404121703 404121911 2.930000e-76 296.0
11 TraesCS4A01G120100 chr4B 95.876 97 3 1 3383 3478 404126387 404126483 5.190000e-34 156.0
12 TraesCS4A01G120100 chr7D 88.041 1363 124 14 1086 2442 560892445 560893774 0.000000e+00 1578.0
13 TraesCS4A01G120100 chr7D 88.241 1063 92 12 1380 2442 560982799 560983828 0.000000e+00 1240.0
14 TraesCS4A01G120100 chr7D 90.385 104 9 1 3 106 519402809 519402707 6.770000e-28 135.0
15 TraesCS4A01G120100 chr7A 88.429 1305 123 14 1068 2357 645038604 645039895 0.000000e+00 1548.0
16 TraesCS4A01G120100 chr7B 88.435 1297 122 17 1071 2353 608876491 608875209 0.000000e+00 1539.0
17 TraesCS4A01G120100 chr2B 77.734 256 41 10 1267 1521 773784332 773784572 4.040000e-30 143.0
18 TraesCS4A01G120100 chr2A 91.262 103 9 0 3 105 693289710 693289812 1.450000e-29 141.0
19 TraesCS4A01G120100 chr2A 85.000 60 9 0 3823 3882 714003149 714003090 1.160000e-05 62.1
20 TraesCS4A01G120100 chr5B 91.262 103 8 1 4 106 133344133 133344234 5.230000e-29 139.0
21 TraesCS4A01G120100 chr1B 77.652 264 31 16 1267 1528 626036439 626036202 6.770000e-28 135.0
22 TraesCS4A01G120100 chr6A 88.889 108 11 1 1 108 502852418 502852312 8.750000e-27 132.0
23 TraesCS4A01G120100 chr6A 75.497 151 26 8 2098 2241 518546482 518546628 3.240000e-06 63.9
24 TraesCS4A01G120100 chr3A 90.099 101 10 0 3 103 648488099 648487999 8.750000e-27 132.0
25 TraesCS4A01G120100 chrUn 89.423 104 10 1 3 106 221226045 221226147 3.150000e-26 130.0
26 TraesCS4A01G120100 chr3D 89.423 104 10 1 3 106 58049383 58049281 3.150000e-26 130.0
27 TraesCS4A01G120100 chr6D 87.963 108 10 3 3 107 403068894 403068787 1.460000e-24 124.0
28 TraesCS4A01G120100 chr6D 75.658 152 24 10 2098 2241 376942212 376942358 3.240000e-06 63.9
29 TraesCS4A01G120100 chr1A 77.043 257 33 14 1267 1521 474246680 474246912 1.460000e-24 124.0
30 TraesCS4A01G120100 chr3B 86.567 67 9 0 3817 3883 106395908 106395842 1.500000e-09 75.0
31 TraesCS4A01G120100 chr6B 84.375 64 10 0 2178 2241 563130964 563131027 3.240000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G120100 chr4A 147650935 147654817 3882 True 7171.000000 7171 100.0000 1 3883 1 chr4A.!!$R1 3882
1 TraesCS4A01G120100 chr4A 148126606 148127636 1030 False 708.000000 708 79.3590 1299 2347 1 chr4A.!!$F1 1048
2 TraesCS4A01G120100 chr4D 323600754 323606038 5284 False 1809.666667 4366 95.0750 386 3883 3 chr4D.!!$F1 3497
3 TraesCS4A01G120100 chr4D 323582289 323583319 1030 True 691.000000 691 79.0370 1299 2347 1 chr4D.!!$R1 1048
4 TraesCS4A01G120100 chr4B 404121703 404127624 5921 False 1050.600000 3179 94.5072 386 3883 5 chr4B.!!$F1 3497
5 TraesCS4A01G120100 chr7D 560892445 560893774 1329 False 1578.000000 1578 88.0410 1086 2442 1 chr7D.!!$F1 1356
6 TraesCS4A01G120100 chr7D 560982799 560983828 1029 False 1240.000000 1240 88.2410 1380 2442 1 chr7D.!!$F2 1062
7 TraesCS4A01G120100 chr7A 645038604 645039895 1291 False 1548.000000 1548 88.4290 1068 2357 1 chr7A.!!$F1 1289
8 TraesCS4A01G120100 chr7B 608875209 608876491 1282 True 1539.000000 1539 88.4350 1071 2353 1 chr7B.!!$R1 1282

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.035056 CTAGGGTTGTGCAAGGAGGG 60.035 60.0 0.00 0.00 0.00 4.30 F
715 3486 0.036164 TACCATTGCTCAAGCGGTGT 59.964 50.0 13.62 2.16 45.83 4.16 F
919 3691 0.466555 CAACGGAACCTCCAAACCCA 60.467 55.0 0.00 0.00 35.91 4.51 F
2661 5475 0.764890 TTGGTAAGCAGAGTGGCACT 59.235 50.0 22.26 22.26 35.83 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 4065 2.050836 TTGCTCCTCGCTGGGAACAA 62.051 55.0 6.57 6.57 42.06 2.83 R
2533 5347 1.071019 AGCATGCGTACGAGTGAACG 61.071 55.0 21.65 0.14 41.92 3.95 R
2813 5707 0.245539 CAATTGCAAGGAGGTGCTGG 59.754 55.0 4.94 0.00 45.17 4.85 R
3628 7428 0.165295 CAGAGCACACGCAATCACTG 59.835 55.0 0.00 0.00 42.27 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.639099 TACTCTCTCGACCAACCGT 57.361 52.632 0.00 0.00 0.00 4.83
19 20 1.162698 TACTCTCTCGACCAACCGTG 58.837 55.000 0.00 0.00 0.00 4.94
20 21 1.444553 CTCTCTCGACCAACCGTGC 60.445 63.158 0.00 0.00 0.00 5.34
21 22 2.142357 CTCTCTCGACCAACCGTGCA 62.142 60.000 0.00 0.00 0.00 4.57
22 23 1.079819 CTCTCGACCAACCGTGCAT 60.080 57.895 0.00 0.00 0.00 3.96
23 24 1.354337 CTCTCGACCAACCGTGCATG 61.354 60.000 0.00 0.00 0.00 4.06
24 25 1.667830 CTCGACCAACCGTGCATGT 60.668 57.895 4.96 0.00 0.00 3.21
25 26 1.900585 CTCGACCAACCGTGCATGTG 61.901 60.000 4.96 0.00 0.00 3.21
26 27 2.953821 GACCAACCGTGCATGTGG 59.046 61.111 12.78 12.78 0.00 4.17
27 28 1.896660 GACCAACCGTGCATGTGGT 60.897 57.895 18.47 18.47 41.20 4.16
28 29 1.852067 GACCAACCGTGCATGTGGTC 61.852 60.000 24.84 24.84 37.54 4.02
29 30 2.555782 CAACCGTGCATGTGGTCG 59.444 61.111 4.96 0.00 37.54 4.79
30 31 2.110213 AACCGTGCATGTGGTCGT 59.890 55.556 4.96 0.00 37.54 4.34
31 32 1.959226 AACCGTGCATGTGGTCGTC 60.959 57.895 4.96 0.00 37.54 4.20
32 33 3.478394 CCGTGCATGTGGTCGTCG 61.478 66.667 4.96 0.00 0.00 5.12
33 34 3.478394 CGTGCATGTGGTCGTCGG 61.478 66.667 0.00 0.00 0.00 4.79
34 35 2.048597 GTGCATGTGGTCGTCGGA 60.049 61.111 0.00 0.00 0.00 4.55
35 36 1.666553 GTGCATGTGGTCGTCGGAA 60.667 57.895 0.00 0.00 0.00 4.30
36 37 1.019278 GTGCATGTGGTCGTCGGAAT 61.019 55.000 0.00 0.00 0.00 3.01
37 38 1.018752 TGCATGTGGTCGTCGGAATG 61.019 55.000 0.00 0.00 0.00 2.67
38 39 1.705337 GCATGTGGTCGTCGGAATGG 61.705 60.000 0.00 0.00 0.00 3.16
39 40 1.089481 CATGTGGTCGTCGGAATGGG 61.089 60.000 0.00 0.00 0.00 4.00
40 41 1.261938 ATGTGGTCGTCGGAATGGGA 61.262 55.000 0.00 0.00 0.00 4.37
41 42 1.261938 TGTGGTCGTCGGAATGGGAT 61.262 55.000 0.00 0.00 0.00 3.85
42 43 0.529992 GTGGTCGTCGGAATGGGATC 60.530 60.000 0.00 0.00 0.00 3.36
43 44 1.299926 GGTCGTCGGAATGGGATCG 60.300 63.158 0.00 0.00 0.00 3.69
44 45 1.949631 GTCGTCGGAATGGGATCGC 60.950 63.158 2.14 2.14 0.00 4.58
45 46 2.661866 CGTCGGAATGGGATCGCC 60.662 66.667 7.38 0.12 0.00 5.54
46 47 2.661866 GTCGGAATGGGATCGCCG 60.662 66.667 7.38 3.65 44.83 6.46
47 48 3.923864 TCGGAATGGGATCGCCGG 61.924 66.667 7.38 0.00 43.71 6.13
48 49 4.988598 CGGAATGGGATCGCCGGG 62.989 72.222 2.18 0.00 40.08 5.73
49 50 3.556306 GGAATGGGATCGCCGGGA 61.556 66.667 2.18 0.00 33.83 5.14
50 51 2.031163 GAATGGGATCGCCGGGAG 59.969 66.667 2.18 0.00 33.83 4.30
51 52 4.256180 AATGGGATCGCCGGGAGC 62.256 66.667 2.18 0.92 38.52 4.70
73 74 4.199432 AGCACACTGAGAGGAACAATAG 57.801 45.455 0.00 0.00 0.00 1.73
74 75 3.834813 AGCACACTGAGAGGAACAATAGA 59.165 43.478 0.00 0.00 0.00 1.98
75 76 4.469227 AGCACACTGAGAGGAACAATAGAT 59.531 41.667 0.00 0.00 0.00 1.98
76 77 4.569966 GCACACTGAGAGGAACAATAGATG 59.430 45.833 0.00 0.00 0.00 2.90
77 78 5.625426 GCACACTGAGAGGAACAATAGATGA 60.625 44.000 0.00 0.00 0.00 2.92
78 79 5.809562 CACACTGAGAGGAACAATAGATGAC 59.190 44.000 0.00 0.00 0.00 3.06
79 80 5.039984 CACTGAGAGGAACAATAGATGACG 58.960 45.833 0.00 0.00 0.00 4.35
80 81 4.098654 ACTGAGAGGAACAATAGATGACGG 59.901 45.833 0.00 0.00 0.00 4.79
81 82 3.181475 TGAGAGGAACAATAGATGACGGC 60.181 47.826 0.00 0.00 0.00 5.68
82 83 3.034635 AGAGGAACAATAGATGACGGCT 58.965 45.455 0.00 0.00 0.00 5.52
83 84 4.215908 AGAGGAACAATAGATGACGGCTA 58.784 43.478 0.00 0.00 0.00 3.93
84 85 4.279671 AGAGGAACAATAGATGACGGCTAG 59.720 45.833 0.00 0.00 0.00 3.42
85 86 3.322254 AGGAACAATAGATGACGGCTAGG 59.678 47.826 0.00 0.00 0.00 3.02
86 87 3.555168 GGAACAATAGATGACGGCTAGGG 60.555 52.174 0.00 0.00 0.00 3.53
87 88 2.679082 ACAATAGATGACGGCTAGGGT 58.321 47.619 0.00 0.00 0.00 4.34
88 89 3.039011 ACAATAGATGACGGCTAGGGTT 58.961 45.455 0.00 0.00 0.00 4.11
89 90 3.181465 ACAATAGATGACGGCTAGGGTTG 60.181 47.826 0.00 0.00 0.00 3.77
90 91 2.154567 TAGATGACGGCTAGGGTTGT 57.845 50.000 0.00 0.00 0.00 3.32
91 92 0.537188 AGATGACGGCTAGGGTTGTG 59.463 55.000 0.00 0.00 0.00 3.33
92 93 1.078426 ATGACGGCTAGGGTTGTGC 60.078 57.895 0.00 0.00 0.00 4.57
93 94 1.836999 ATGACGGCTAGGGTTGTGCA 61.837 55.000 0.00 0.00 0.00 4.57
94 95 1.302192 GACGGCTAGGGTTGTGCAA 60.302 57.895 0.00 0.00 0.00 4.08
95 96 1.298859 GACGGCTAGGGTTGTGCAAG 61.299 60.000 0.00 0.00 0.00 4.01
96 97 2.040544 CGGCTAGGGTTGTGCAAGG 61.041 63.158 0.00 0.00 0.00 3.61
97 98 1.378762 GGCTAGGGTTGTGCAAGGA 59.621 57.895 0.00 0.00 0.00 3.36
98 99 0.678048 GGCTAGGGTTGTGCAAGGAG 60.678 60.000 0.00 0.00 0.00 3.69
99 100 0.678048 GCTAGGGTTGTGCAAGGAGG 60.678 60.000 0.00 0.00 0.00 4.30
100 101 0.035056 CTAGGGTTGTGCAAGGAGGG 60.035 60.000 0.00 0.00 0.00 4.30
101 102 0.474854 TAGGGTTGTGCAAGGAGGGA 60.475 55.000 0.00 0.00 0.00 4.20
102 103 1.303643 GGGTTGTGCAAGGAGGGAG 60.304 63.158 0.00 0.00 0.00 4.30
103 104 1.456287 GGTTGTGCAAGGAGGGAGT 59.544 57.895 0.00 0.00 0.00 3.85
104 105 0.890996 GGTTGTGCAAGGAGGGAGTG 60.891 60.000 0.00 0.00 0.00 3.51
105 106 0.108585 GTTGTGCAAGGAGGGAGTGA 59.891 55.000 0.00 0.00 0.00 3.41
106 107 0.843309 TTGTGCAAGGAGGGAGTGAA 59.157 50.000 0.00 0.00 0.00 3.18
107 108 1.067295 TGTGCAAGGAGGGAGTGAAT 58.933 50.000 0.00 0.00 0.00 2.57
108 109 1.425066 TGTGCAAGGAGGGAGTGAATT 59.575 47.619 0.00 0.00 0.00 2.17
109 110 2.087646 GTGCAAGGAGGGAGTGAATTC 58.912 52.381 0.00 0.00 0.00 2.17
110 111 1.339055 TGCAAGGAGGGAGTGAATTCG 60.339 52.381 0.04 0.00 0.00 3.34
111 112 1.339151 GCAAGGAGGGAGTGAATTCGT 60.339 52.381 0.04 0.00 0.00 3.85
112 113 2.622436 CAAGGAGGGAGTGAATTCGTC 58.378 52.381 0.04 0.00 0.00 4.20
113 114 1.938585 AGGAGGGAGTGAATTCGTCA 58.061 50.000 0.04 0.00 0.00 4.35
114 115 2.257207 AGGAGGGAGTGAATTCGTCAA 58.743 47.619 0.04 0.00 38.23 3.18
115 116 2.028020 AGGAGGGAGTGAATTCGTCAAC 60.028 50.000 0.04 0.00 38.23 3.18
116 117 2.289444 GGAGGGAGTGAATTCGTCAACA 60.289 50.000 0.04 0.00 38.23 3.33
117 118 3.600388 GAGGGAGTGAATTCGTCAACAT 58.400 45.455 0.04 0.00 38.23 2.71
118 119 3.338249 AGGGAGTGAATTCGTCAACATG 58.662 45.455 0.04 0.00 38.23 3.21
119 120 2.159517 GGGAGTGAATTCGTCAACATGC 60.160 50.000 0.04 0.00 38.23 4.06
120 121 2.483877 GGAGTGAATTCGTCAACATGCA 59.516 45.455 0.04 0.00 38.23 3.96
121 122 3.058293 GGAGTGAATTCGTCAACATGCAA 60.058 43.478 0.04 0.00 38.23 4.08
122 123 3.888934 AGTGAATTCGTCAACATGCAAC 58.111 40.909 0.04 0.00 38.23 4.17
123 124 2.651703 GTGAATTCGTCAACATGCAACG 59.348 45.455 1.46 1.46 38.23 4.10
124 125 1.643810 GAATTCGTCAACATGCAACGC 59.356 47.619 3.02 0.00 36.40 4.84
125 126 0.452618 ATTCGTCAACATGCAACGCG 60.453 50.000 3.53 3.53 36.40 6.01
126 127 3.158813 CGTCAACATGCAACGCGC 61.159 61.111 5.73 0.00 42.89 6.86
127 128 3.158813 GTCAACATGCAACGCGCG 61.159 61.111 30.96 30.96 46.97 6.86
149 150 4.980805 GTGACGTGGCAGGCGGAA 62.981 66.667 7.17 0.00 0.00 4.30
150 151 4.680237 TGACGTGGCAGGCGGAAG 62.680 66.667 7.17 0.00 0.00 3.46
151 152 4.373116 GACGTGGCAGGCGGAAGA 62.373 66.667 7.17 0.00 0.00 2.87
152 153 4.379243 ACGTGGCAGGCGGAAGAG 62.379 66.667 7.17 0.00 0.00 2.85
154 155 3.706373 GTGGCAGGCGGAAGAGGA 61.706 66.667 0.00 0.00 0.00 3.71
155 156 3.393970 TGGCAGGCGGAAGAGGAG 61.394 66.667 0.00 0.00 0.00 3.69
156 157 4.168291 GGCAGGCGGAAGAGGAGG 62.168 72.222 0.00 0.00 0.00 4.30
157 158 3.077556 GCAGGCGGAAGAGGAGGA 61.078 66.667 0.00 0.00 0.00 3.71
158 159 3.087666 GCAGGCGGAAGAGGAGGAG 62.088 68.421 0.00 0.00 0.00 3.69
159 160 2.762043 AGGCGGAAGAGGAGGAGC 60.762 66.667 0.00 0.00 0.00 4.70
160 161 4.214327 GGCGGAAGAGGAGGAGCG 62.214 72.222 0.00 0.00 0.00 5.03
161 162 4.882396 GCGGAAGAGGAGGAGCGC 62.882 72.222 0.00 0.00 0.00 5.92
162 163 4.560856 CGGAAGAGGAGGAGCGCG 62.561 72.222 0.00 0.00 0.00 6.86
163 164 3.453679 GGAAGAGGAGGAGCGCGT 61.454 66.667 8.43 0.00 0.00 6.01
164 165 2.202676 GAAGAGGAGGAGCGCGTG 60.203 66.667 8.43 0.00 0.00 5.34
165 166 2.992114 AAGAGGAGGAGCGCGTGT 60.992 61.111 8.43 0.00 0.00 4.49
166 167 3.288308 AAGAGGAGGAGCGCGTGTG 62.288 63.158 8.43 0.00 0.00 3.82
167 168 4.057428 GAGGAGGAGCGCGTGTGT 62.057 66.667 8.43 0.00 0.00 3.72
168 169 4.363990 AGGAGGAGCGCGTGTGTG 62.364 66.667 8.43 0.00 0.00 3.82
176 177 4.920662 CGCGTGTGTGCAATTTCT 57.079 50.000 0.00 0.00 34.15 2.52
177 178 3.162499 CGCGTGTGTGCAATTTCTT 57.838 47.368 0.00 0.00 34.15 2.52
178 179 1.476074 CGCGTGTGTGCAATTTCTTT 58.524 45.000 0.00 0.00 34.15 2.52
179 180 1.851666 CGCGTGTGTGCAATTTCTTTT 59.148 42.857 0.00 0.00 34.15 2.27
180 181 2.281234 CGCGTGTGTGCAATTTCTTTTT 59.719 40.909 0.00 0.00 34.15 1.94
181 182 3.599116 CGCGTGTGTGCAATTTCTTTTTC 60.599 43.478 0.00 0.00 34.15 2.29
182 183 3.302415 GCGTGTGTGCAATTTCTTTTTCC 60.302 43.478 0.00 0.00 34.15 3.13
183 184 3.862267 CGTGTGTGCAATTTCTTTTTCCA 59.138 39.130 0.00 0.00 0.00 3.53
184 185 4.328440 CGTGTGTGCAATTTCTTTTTCCAA 59.672 37.500 0.00 0.00 0.00 3.53
185 186 5.500610 CGTGTGTGCAATTTCTTTTTCCAAG 60.501 40.000 0.00 0.00 0.00 3.61
186 187 4.332268 TGTGTGCAATTTCTTTTTCCAAGC 59.668 37.500 0.00 0.00 0.00 4.01
187 188 4.571984 GTGTGCAATTTCTTTTTCCAAGCT 59.428 37.500 0.00 0.00 0.00 3.74
188 189 4.810491 TGTGCAATTTCTTTTTCCAAGCTC 59.190 37.500 0.00 0.00 0.00 4.09
189 190 4.050553 TGCAATTTCTTTTTCCAAGCTCG 58.949 39.130 0.00 0.00 0.00 5.03
190 191 3.120889 GCAATTTCTTTTTCCAAGCTCGC 60.121 43.478 0.00 0.00 0.00 5.03
191 192 4.050553 CAATTTCTTTTTCCAAGCTCGCA 58.949 39.130 0.00 0.00 0.00 5.10
192 193 3.791973 TTTCTTTTTCCAAGCTCGCAA 57.208 38.095 0.00 0.00 0.00 4.85
193 194 4.320608 TTTCTTTTTCCAAGCTCGCAAT 57.679 36.364 0.00 0.00 0.00 3.56
194 195 3.287312 TCTTTTTCCAAGCTCGCAATG 57.713 42.857 0.00 0.00 0.00 2.82
195 196 2.030007 TCTTTTTCCAAGCTCGCAATGG 60.030 45.455 7.25 7.25 35.49 3.16
196 197 0.038343 TTTTCCAAGCTCGCAATGGC 60.038 50.000 8.38 0.00 34.13 4.40
197 198 1.177895 TTTCCAAGCTCGCAATGGCA 61.178 50.000 8.38 0.00 41.24 4.92
198 199 0.966875 TTCCAAGCTCGCAATGGCAT 60.967 50.000 0.00 0.00 41.24 4.40
199 200 1.226859 CCAAGCTCGCAATGGCATG 60.227 57.895 0.00 0.00 41.24 4.06
200 201 1.509463 CAAGCTCGCAATGGCATGT 59.491 52.632 0.00 0.00 41.24 3.21
201 202 0.800683 CAAGCTCGCAATGGCATGTG 60.801 55.000 0.00 3.01 41.24 3.21
202 203 1.940883 AAGCTCGCAATGGCATGTGG 61.941 55.000 0.00 0.00 41.24 4.17
203 204 2.703798 GCTCGCAATGGCATGTGGT 61.704 57.895 0.00 0.00 41.24 4.16
204 205 1.375853 GCTCGCAATGGCATGTGGTA 61.376 55.000 0.00 0.00 41.24 3.25
205 206 0.659427 CTCGCAATGGCATGTGGTAG 59.341 55.000 0.00 0.00 41.24 3.18
206 207 0.251634 TCGCAATGGCATGTGGTAGA 59.748 50.000 0.00 0.00 41.24 2.59
207 208 0.659427 CGCAATGGCATGTGGTAGAG 59.341 55.000 0.00 0.00 41.24 2.43
208 209 0.383231 GCAATGGCATGTGGTAGAGC 59.617 55.000 0.00 0.00 40.72 4.09
209 210 1.753930 CAATGGCATGTGGTAGAGCA 58.246 50.000 0.00 0.00 0.00 4.26
210 211 1.402968 CAATGGCATGTGGTAGAGCAC 59.597 52.381 0.00 4.91 0.00 4.40
211 212 0.914644 ATGGCATGTGGTAGAGCACT 59.085 50.000 12.65 0.00 0.00 4.40
212 213 0.692476 TGGCATGTGGTAGAGCACTT 59.308 50.000 12.65 4.15 0.00 3.16
213 214 1.905894 TGGCATGTGGTAGAGCACTTA 59.094 47.619 12.65 0.00 0.00 2.24
214 215 2.505407 TGGCATGTGGTAGAGCACTTAT 59.495 45.455 12.65 0.00 0.00 1.73
215 216 3.709141 TGGCATGTGGTAGAGCACTTATA 59.291 43.478 12.65 0.00 0.00 0.98
216 217 4.163268 TGGCATGTGGTAGAGCACTTATAA 59.837 41.667 12.65 0.00 0.00 0.98
217 218 5.123227 GGCATGTGGTAGAGCACTTATAAA 58.877 41.667 12.65 0.00 0.00 1.40
218 219 5.237344 GGCATGTGGTAGAGCACTTATAAAG 59.763 44.000 12.65 0.00 0.00 1.85
219 220 6.049149 GCATGTGGTAGAGCACTTATAAAGA 58.951 40.000 12.65 0.00 0.00 2.52
220 221 6.201806 GCATGTGGTAGAGCACTTATAAAGAG 59.798 42.308 12.65 0.00 0.00 2.85
221 222 6.222038 TGTGGTAGAGCACTTATAAAGAGG 57.778 41.667 12.65 0.00 0.00 3.69
222 223 5.720041 TGTGGTAGAGCACTTATAAAGAGGT 59.280 40.000 12.65 0.00 32.55 3.85
223 224 6.127423 TGTGGTAGAGCACTTATAAAGAGGTC 60.127 42.308 12.65 7.83 43.78 3.85
228 229 6.215495 GAGCACTTATAAAGAGGTCTCACT 57.785 41.667 8.43 0.00 41.40 3.41
229 230 6.215495 AGCACTTATAAAGAGGTCTCACTC 57.785 41.667 0.55 0.00 37.77 3.51
238 239 4.601406 AGAGGTCTCACTCTTACTCCAT 57.399 45.455 0.55 0.00 45.21 3.41
239 240 4.941713 AGAGGTCTCACTCTTACTCCATT 58.058 43.478 0.55 0.00 45.21 3.16
240 241 6.080969 AGAGGTCTCACTCTTACTCCATTA 57.919 41.667 0.55 0.00 45.21 1.90
241 242 6.126409 AGAGGTCTCACTCTTACTCCATTAG 58.874 44.000 0.55 0.00 45.21 1.73
242 243 4.647399 AGGTCTCACTCTTACTCCATTAGC 59.353 45.833 0.00 0.00 0.00 3.09
243 244 4.402793 GGTCTCACTCTTACTCCATTAGCA 59.597 45.833 0.00 0.00 0.00 3.49
244 245 5.105310 GGTCTCACTCTTACTCCATTAGCAA 60.105 44.000 0.00 0.00 0.00 3.91
245 246 6.407525 GGTCTCACTCTTACTCCATTAGCAAT 60.408 42.308 0.00 0.00 0.00 3.56
246 247 7.201920 GGTCTCACTCTTACTCCATTAGCAATA 60.202 40.741 0.00 0.00 0.00 1.90
247 248 8.364142 GTCTCACTCTTACTCCATTAGCAATAT 58.636 37.037 0.00 0.00 0.00 1.28
248 249 8.363390 TCTCACTCTTACTCCATTAGCAATATG 58.637 37.037 0.00 0.00 0.00 1.78
249 250 7.445121 TCACTCTTACTCCATTAGCAATATGG 58.555 38.462 5.63 5.63 43.22 2.74
250 251 7.071196 TCACTCTTACTCCATTAGCAATATGGT 59.929 37.037 10.40 0.00 42.58 3.55
251 252 8.367911 CACTCTTACTCCATTAGCAATATGGTA 58.632 37.037 10.40 0.00 42.58 3.25
252 253 8.368668 ACTCTTACTCCATTAGCAATATGGTAC 58.631 37.037 10.40 0.00 42.58 3.34
253 254 8.492415 TCTTACTCCATTAGCAATATGGTACT 57.508 34.615 10.40 0.00 42.58 2.73
254 255 9.596308 TCTTACTCCATTAGCAATATGGTACTA 57.404 33.333 10.40 0.00 42.58 1.82
266 267 9.851686 AGCAATATGGTACTAAATTTCTCATCA 57.148 29.630 0.00 0.00 0.00 3.07
267 268 9.884465 GCAATATGGTACTAAATTTCTCATCAC 57.116 33.333 0.00 0.00 0.00 3.06
277 278 9.399797 ACTAAATTTCTCATCACTTATCATGCA 57.600 29.630 0.00 0.00 0.00 3.96
280 281 8.693120 AATTTCTCATCACTTATCATGCATCT 57.307 30.769 0.00 0.00 0.00 2.90
281 282 9.788889 AATTTCTCATCACTTATCATGCATCTA 57.211 29.630 0.00 0.00 0.00 1.98
282 283 9.788889 ATTTCTCATCACTTATCATGCATCTAA 57.211 29.630 0.00 0.00 0.00 2.10
283 284 9.617523 TTTCTCATCACTTATCATGCATCTAAA 57.382 29.630 0.00 0.00 0.00 1.85
284 285 9.788889 TTCTCATCACTTATCATGCATCTAAAT 57.211 29.630 0.00 0.00 0.00 1.40
285 286 9.216117 TCTCATCACTTATCATGCATCTAAATG 57.784 33.333 0.00 0.00 35.87 2.32
286 287 8.331730 TCATCACTTATCATGCATCTAAATGG 57.668 34.615 0.00 0.00 33.19 3.16
287 288 7.392393 TCATCACTTATCATGCATCTAAATGGG 59.608 37.037 0.00 0.00 33.19 4.00
288 289 5.474532 TCACTTATCATGCATCTAAATGGGC 59.525 40.000 0.00 0.00 33.19 5.36
289 290 4.768968 ACTTATCATGCATCTAAATGGGCC 59.231 41.667 0.00 0.00 33.19 5.80
290 291 3.537795 ATCATGCATCTAAATGGGCCT 57.462 42.857 4.53 0.00 33.19 5.19
291 292 3.317455 TCATGCATCTAAATGGGCCTT 57.683 42.857 4.53 0.00 33.19 4.35
292 293 4.451891 TCATGCATCTAAATGGGCCTTA 57.548 40.909 4.53 0.00 33.19 2.69
293 294 4.802307 TCATGCATCTAAATGGGCCTTAA 58.198 39.130 4.53 0.00 33.19 1.85
294 295 5.207354 TCATGCATCTAAATGGGCCTTAAA 58.793 37.500 4.53 0.00 33.19 1.52
295 296 5.302568 TCATGCATCTAAATGGGCCTTAAAG 59.697 40.000 4.53 0.00 33.19 1.85
296 297 4.865905 TGCATCTAAATGGGCCTTAAAGA 58.134 39.130 4.53 5.62 33.19 2.52
297 298 5.457686 TGCATCTAAATGGGCCTTAAAGAT 58.542 37.500 4.53 7.76 33.19 2.40
298 299 5.898972 TGCATCTAAATGGGCCTTAAAGATT 59.101 36.000 4.53 0.00 33.19 2.40
299 300 7.066142 TGCATCTAAATGGGCCTTAAAGATTA 58.934 34.615 4.53 0.43 33.19 1.75
300 301 7.563188 TGCATCTAAATGGGCCTTAAAGATTAA 59.437 33.333 4.53 0.00 33.19 1.40
301 302 8.588472 GCATCTAAATGGGCCTTAAAGATTAAT 58.412 33.333 4.53 0.00 33.19 1.40
306 307 7.855784 AATGGGCCTTAAAGATTAATTAGGG 57.144 36.000 4.53 0.00 33.79 3.53
307 308 6.599986 TGGGCCTTAAAGATTAATTAGGGA 57.400 37.500 4.53 0.00 32.74 4.20
308 309 7.174363 TGGGCCTTAAAGATTAATTAGGGAT 57.826 36.000 4.53 0.00 32.74 3.85
309 310 7.601017 TGGGCCTTAAAGATTAATTAGGGATT 58.399 34.615 4.53 0.00 32.74 3.01
310 311 8.738592 TGGGCCTTAAAGATTAATTAGGGATTA 58.261 33.333 4.53 0.00 32.74 1.75
311 312 9.769677 GGGCCTTAAAGATTAATTAGGGATTAT 57.230 33.333 0.84 0.00 32.74 1.28
326 327 8.888836 TTAGGGATTATTGTCCTATATGACGA 57.111 34.615 1.07 1.07 38.11 4.20
327 328 7.792364 AGGGATTATTGTCCTATATGACGAA 57.208 36.000 2.60 0.51 38.11 3.85
328 329 8.202461 AGGGATTATTGTCCTATATGACGAAA 57.798 34.615 2.60 0.00 38.11 3.46
329 330 8.314751 AGGGATTATTGTCCTATATGACGAAAG 58.685 37.037 2.60 0.00 38.11 2.62
330 331 7.064728 GGGATTATTGTCCTATATGACGAAAGC 59.935 40.741 2.60 1.10 38.11 3.51
331 332 7.064728 GGATTATTGTCCTATATGACGAAAGCC 59.935 40.741 2.60 5.66 38.11 4.35
332 333 3.746045 TGTCCTATATGACGAAAGCCC 57.254 47.619 4.04 0.00 38.11 5.19
333 334 3.035363 TGTCCTATATGACGAAAGCCCA 58.965 45.455 4.04 0.00 38.11 5.36
334 335 3.646162 TGTCCTATATGACGAAAGCCCAT 59.354 43.478 4.04 0.00 38.11 4.00
335 336 4.246458 GTCCTATATGACGAAAGCCCATC 58.754 47.826 0.00 0.00 0.00 3.51
336 337 4.021016 GTCCTATATGACGAAAGCCCATCT 60.021 45.833 0.00 0.00 0.00 2.90
337 338 5.185249 GTCCTATATGACGAAAGCCCATCTA 59.815 44.000 0.00 0.00 0.00 1.98
338 339 5.958380 TCCTATATGACGAAAGCCCATCTAT 59.042 40.000 0.00 0.00 0.00 1.98
339 340 7.068348 GTCCTATATGACGAAAGCCCATCTATA 59.932 40.741 0.00 0.00 0.00 1.31
340 341 7.618117 TCCTATATGACGAAAGCCCATCTATAA 59.382 37.037 0.00 0.00 0.00 0.98
341 342 8.424918 CCTATATGACGAAAGCCCATCTATAAT 58.575 37.037 0.00 0.00 0.00 1.28
342 343 9.469807 CTATATGACGAAAGCCCATCTATAATC 57.530 37.037 0.00 0.00 0.00 1.75
343 344 4.894784 TGACGAAAGCCCATCTATAATCC 58.105 43.478 0.00 0.00 0.00 3.01
344 345 4.346709 TGACGAAAGCCCATCTATAATCCA 59.653 41.667 0.00 0.00 0.00 3.41
345 346 5.163248 TGACGAAAGCCCATCTATAATCCAA 60.163 40.000 0.00 0.00 0.00 3.53
346 347 5.063880 ACGAAAGCCCATCTATAATCCAAC 58.936 41.667 0.00 0.00 0.00 3.77
347 348 5.063204 CGAAAGCCCATCTATAATCCAACA 58.937 41.667 0.00 0.00 0.00 3.33
348 349 5.180117 CGAAAGCCCATCTATAATCCAACAG 59.820 44.000 0.00 0.00 0.00 3.16
349 350 4.647564 AGCCCATCTATAATCCAACAGG 57.352 45.455 0.00 0.00 0.00 4.00
350 351 3.983410 AGCCCATCTATAATCCAACAGGT 59.017 43.478 0.00 0.00 0.00 4.00
351 352 4.042187 AGCCCATCTATAATCCAACAGGTC 59.958 45.833 0.00 0.00 0.00 3.85
352 353 4.202461 GCCCATCTATAATCCAACAGGTCA 60.202 45.833 0.00 0.00 0.00 4.02
353 354 5.690097 GCCCATCTATAATCCAACAGGTCAA 60.690 44.000 0.00 0.00 0.00 3.18
354 355 5.765182 CCCATCTATAATCCAACAGGTCAAC 59.235 44.000 0.00 0.00 0.00 3.18
355 356 6.409695 CCCATCTATAATCCAACAGGTCAACT 60.410 42.308 0.00 0.00 0.00 3.16
369 370 3.549299 GTCAACTGTTGAGCTGGATTG 57.451 47.619 22.61 0.00 41.01 2.67
370 371 1.881973 TCAACTGTTGAGCTGGATTGC 59.118 47.619 18.69 0.00 34.08 3.56
371 372 1.068055 CAACTGTTGAGCTGGATTGCC 60.068 52.381 15.26 0.00 0.00 4.52
372 373 0.403271 ACTGTTGAGCTGGATTGCCT 59.597 50.000 0.00 0.00 34.31 4.75
373 374 1.630369 ACTGTTGAGCTGGATTGCCTA 59.370 47.619 0.00 0.00 34.31 3.93
374 375 2.040278 ACTGTTGAGCTGGATTGCCTAA 59.960 45.455 0.00 0.00 34.31 2.69
375 376 3.084039 CTGTTGAGCTGGATTGCCTAAA 58.916 45.455 0.00 0.00 34.31 1.85
376 377 3.495331 TGTTGAGCTGGATTGCCTAAAA 58.505 40.909 0.00 0.00 34.31 1.52
377 378 3.894427 TGTTGAGCTGGATTGCCTAAAAA 59.106 39.130 0.00 0.00 34.31 1.94
491 492 5.339990 GGACAAATTAATTAGCATGCACGT 58.660 37.500 21.98 1.04 0.00 4.49
567 568 2.030805 GCAGACCATGAGTGTTGTTTCC 60.031 50.000 0.00 0.00 0.00 3.13
569 570 3.499918 CAGACCATGAGTGTTGTTTCCTC 59.500 47.826 0.00 0.00 0.00 3.71
605 3376 7.518370 GCCGGCTAATTGATAATTCCATATACG 60.518 40.741 22.15 0.00 32.38 3.06
617 3388 1.196808 CCATATACGAAACGCCATGGC 59.803 52.381 27.67 27.67 30.42 4.40
639 3410 4.815553 CGAGATCGCTACAATGAAAACTG 58.184 43.478 0.00 0.00 0.00 3.16
640 3411 4.259970 CGAGATCGCTACAATGAAAACTGG 60.260 45.833 0.00 0.00 0.00 4.00
641 3412 4.832248 AGATCGCTACAATGAAAACTGGA 58.168 39.130 0.00 0.00 0.00 3.86
642 3413 4.872691 AGATCGCTACAATGAAAACTGGAG 59.127 41.667 0.00 0.00 0.00 3.86
658 3429 5.165961 ACTGGAGTAGCTAAGATTGCAAA 57.834 39.130 1.71 0.00 0.00 3.68
660 3431 4.517285 TGGAGTAGCTAAGATTGCAAAGG 58.483 43.478 1.71 0.00 0.00 3.11
688 3459 1.195900 TGCTGTCAACGCGGAAAATAC 59.804 47.619 12.47 0.00 0.00 1.89
713 3484 2.128771 ATTACCATTGCTCAAGCGGT 57.871 45.000 10.23 10.23 45.83 5.68
715 3486 0.036164 TACCATTGCTCAAGCGGTGT 59.964 50.000 13.62 2.16 45.83 4.16
716 3487 1.210931 CCATTGCTCAAGCGGTGTG 59.789 57.895 0.00 0.00 45.83 3.82
738 3509 4.220382 TGTCTTGTGCAATTAGGAAATGGG 59.780 41.667 0.00 0.00 0.00 4.00
741 3512 5.306678 TCTTGTGCAATTAGGAAATGGGTTT 59.693 36.000 0.00 0.00 0.00 3.27
744 3515 5.046950 TGTGCAATTAGGAAATGGGTTTACC 60.047 40.000 0.00 0.00 40.81 2.85
748 3519 6.630071 CAATTAGGAAATGGGTTTACCTGTG 58.370 40.000 0.00 0.00 41.11 3.66
765 3536 3.302344 GTTGGTTGGGTGCGCCAT 61.302 61.111 19.98 0.00 36.17 4.40
919 3691 0.466555 CAACGGAACCTCCAAACCCA 60.467 55.000 0.00 0.00 35.91 4.51
950 3722 2.743183 CGCCTCTCTGATTTAACCAGGG 60.743 54.545 0.00 1.89 33.51 4.45
1052 3830 4.147449 CGATGGCGGAGGAGCACA 62.147 66.667 0.00 0.00 39.27 4.57
1053 3831 2.202987 GATGGCGGAGGAGCACAG 60.203 66.667 0.00 0.00 39.27 3.66
1218 3996 4.944372 CCGCATCGAGTACGCCCC 62.944 72.222 0.00 0.00 39.58 5.80
1813 4609 1.291877 GCTTCGTGATCCGCAACTGT 61.292 55.000 0.00 0.00 36.19 3.55
2353 5149 2.282180 GAGTTCAGGGCCGCCAAA 60.282 61.111 12.58 0.00 0.00 3.28
2416 5212 4.141959 TGGATATGAACGTGCAGAGATCAA 60.142 41.667 1.02 0.00 0.00 2.57
2507 5321 6.803320 CACCATTGTGAAATGTAAGTCATGTC 59.197 38.462 0.00 0.00 45.76 3.06
2533 5347 2.201732 CATTCAAATGGATGCTGCTGC 58.798 47.619 8.89 8.89 34.74 5.25
2571 5385 3.276857 GCTTCATTCTTCATCTCCAGCA 58.723 45.455 0.00 0.00 0.00 4.41
2660 5474 1.537202 CTTTGGTAAGCAGAGTGGCAC 59.463 52.381 10.29 10.29 35.83 5.01
2661 5475 0.764890 TTGGTAAGCAGAGTGGCACT 59.235 50.000 22.26 22.26 35.83 4.40
2672 5486 4.681781 GCAGAGTGGCACTATGAATACTGT 60.682 45.833 38.23 6.88 39.66 3.55
2675 5489 6.699204 CAGAGTGGCACTATGAATACTGTAAG 59.301 42.308 32.73 5.02 39.66 2.34
2813 5707 9.736023 AAATTTTGTTTCAAGTCAGATCACTAC 57.264 29.630 0.00 0.00 0.00 2.73
2854 5748 5.268387 TGTAACACAATATTTGCAGGGGAT 58.732 37.500 0.00 0.00 0.00 3.85
2863 5757 2.787473 TTGCAGGGGATTGACTGTAG 57.213 50.000 0.00 0.00 37.07 2.74
2968 5862 9.716531 TCATAGTTTCATTATATTGCCTCTCTG 57.283 33.333 0.00 0.00 0.00 3.35
3041 5935 9.447157 AGACTAGAACATTCGTACTAGTAAAGT 57.553 33.333 3.61 0.00 43.31 2.66
3057 5951 6.532988 AGTAAAGTAGGAAACTAGCTCTGG 57.467 41.667 0.00 0.00 45.49 3.86
3066 5960 0.875059 ACTAGCTCTGGTTTTTGCGC 59.125 50.000 0.00 0.00 0.00 6.09
3073 5967 1.065401 TCTGGTTTTTGCGCTTGACAG 59.935 47.619 9.73 9.80 0.00 3.51
3106 6000 0.684535 TTCGCCACTCAAGATGTCCA 59.315 50.000 0.00 0.00 0.00 4.02
3198 6092 5.759763 TGCTGGTGCTAACAATACATGATAG 59.240 40.000 0.00 0.00 40.48 2.08
3381 6275 9.696917 AAGGAAAACATCAGTTTGATATTTGAC 57.303 29.630 0.00 0.00 46.79 3.18
3382 6276 8.306761 AGGAAAACATCAGTTTGATATTTGACC 58.693 33.333 9.32 9.32 46.79 4.02
3384 6278 9.643693 GAAAACATCAGTTTGATATTTGACCAT 57.356 29.630 0.00 0.00 46.79 3.55
3478 7278 4.576873 TGAGGACGCAAACAATGTAAAAGA 59.423 37.500 0.00 0.00 0.00 2.52
3505 7305 4.400529 TGAATGCAGCGGAGTAGATAAA 57.599 40.909 0.00 0.00 0.00 1.40
3556 7356 7.214467 TGCCAAAGAAGTTAACCTAATCTTG 57.786 36.000 0.88 0.00 31.14 3.02
3628 7428 3.444034 GGTTTCCCCAGCTTATTTCAGAC 59.556 47.826 0.00 0.00 0.00 3.51
3740 7540 5.687441 GCCCTATTCATATGTTGTGACCTGA 60.687 44.000 1.90 0.00 0.00 3.86
3847 7647 1.202498 CCCTCCGTCCCGAATTACTTC 60.202 57.143 0.00 0.00 0.00 3.01
3849 7649 2.954318 CCTCCGTCCCGAATTACTTCTA 59.046 50.000 0.00 0.00 0.00 2.10
3858 7658 6.201234 GTCCCGAATTACTTCTAGCAGAAATC 59.799 42.308 0.00 0.00 33.19 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.162698 CACGGTTGGTCGAGAGAGTA 58.837 55.000 0.00 0.00 43.49 2.59
1 2 1.957562 CACGGTTGGTCGAGAGAGT 59.042 57.895 0.00 0.00 43.49 3.24
2 3 1.444553 GCACGGTTGGTCGAGAGAG 60.445 63.158 0.00 0.00 43.49 3.20
3 4 1.532604 ATGCACGGTTGGTCGAGAGA 61.533 55.000 0.00 0.00 38.16 3.10
4 5 1.079819 ATGCACGGTTGGTCGAGAG 60.080 57.895 0.00 0.00 0.00 3.20
5 6 1.374125 CATGCACGGTTGGTCGAGA 60.374 57.895 0.00 0.00 0.00 4.04
6 7 1.667830 ACATGCACGGTTGGTCGAG 60.668 57.895 0.00 0.00 0.00 4.04
7 8 1.958715 CACATGCACGGTTGGTCGA 60.959 57.895 0.00 0.00 0.00 4.20
8 9 2.555782 CACATGCACGGTTGGTCG 59.444 61.111 0.00 0.00 0.00 4.79
9 10 1.852067 GACCACATGCACGGTTGGTC 61.852 60.000 17.43 17.43 38.93 4.02
10 11 1.896660 GACCACATGCACGGTTGGT 60.897 57.895 9.51 9.51 34.99 3.67
11 12 2.953821 GACCACATGCACGGTTGG 59.046 61.111 5.80 4.71 34.99 3.77
12 13 2.170260 GACGACCACATGCACGGTTG 62.170 60.000 14.67 14.67 41.75 3.77
13 14 1.959226 GACGACCACATGCACGGTT 60.959 57.895 5.80 0.00 34.99 4.44
14 15 2.357034 GACGACCACATGCACGGT 60.357 61.111 4.02 4.02 38.56 4.83
15 16 3.478394 CGACGACCACATGCACGG 61.478 66.667 0.00 0.00 0.00 4.94
16 17 3.478394 CCGACGACCACATGCACG 61.478 66.667 0.00 0.00 0.00 5.34
17 18 1.019278 ATTCCGACGACCACATGCAC 61.019 55.000 0.00 0.00 0.00 4.57
18 19 1.018752 CATTCCGACGACCACATGCA 61.019 55.000 0.00 0.00 0.00 3.96
19 20 1.705337 CCATTCCGACGACCACATGC 61.705 60.000 0.00 0.00 0.00 4.06
20 21 1.089481 CCCATTCCGACGACCACATG 61.089 60.000 0.00 0.00 0.00 3.21
21 22 1.220749 CCCATTCCGACGACCACAT 59.779 57.895 0.00 0.00 0.00 3.21
22 23 1.261938 ATCCCATTCCGACGACCACA 61.262 55.000 0.00 0.00 0.00 4.17
23 24 0.529992 GATCCCATTCCGACGACCAC 60.530 60.000 0.00 0.00 0.00 4.16
24 25 1.820581 GATCCCATTCCGACGACCA 59.179 57.895 0.00 0.00 0.00 4.02
25 26 1.299926 CGATCCCATTCCGACGACC 60.300 63.158 0.00 0.00 0.00 4.79
26 27 1.949631 GCGATCCCATTCCGACGAC 60.950 63.158 0.00 0.00 0.00 4.34
27 28 2.415843 GCGATCCCATTCCGACGA 59.584 61.111 0.00 0.00 0.00 4.20
28 29 2.661866 GGCGATCCCATTCCGACG 60.662 66.667 0.00 0.00 0.00 5.12
29 30 2.661866 CGGCGATCCCATTCCGAC 60.662 66.667 0.00 0.00 44.23 4.79
30 31 3.923864 CCGGCGATCCCATTCCGA 61.924 66.667 9.30 0.00 44.23 4.55
31 32 4.988598 CCCGGCGATCCCATTCCG 62.989 72.222 9.30 0.00 41.41 4.30
32 33 3.537206 CTCCCGGCGATCCCATTCC 62.537 68.421 9.30 0.00 0.00 3.01
33 34 2.031163 CTCCCGGCGATCCCATTC 59.969 66.667 9.30 0.00 0.00 2.67
34 35 4.256180 GCTCCCGGCGATCCCATT 62.256 66.667 9.30 0.00 0.00 3.16
44 45 3.947132 CTCAGTGTGCTGCTCCCGG 62.947 68.421 0.00 0.00 42.29 5.73
45 46 2.433838 CTCAGTGTGCTGCTCCCG 60.434 66.667 0.00 0.00 42.29 5.14
46 47 1.079266 CTCTCAGTGTGCTGCTCCC 60.079 63.158 0.00 0.00 42.29 4.30
47 48 1.079266 CCTCTCAGTGTGCTGCTCC 60.079 63.158 0.00 0.00 42.29 4.70
48 49 0.319728 TTCCTCTCAGTGTGCTGCTC 59.680 55.000 0.00 0.00 42.29 4.26
49 50 0.034616 GTTCCTCTCAGTGTGCTGCT 59.965 55.000 0.00 0.00 42.29 4.24
50 51 0.250038 TGTTCCTCTCAGTGTGCTGC 60.250 55.000 0.00 0.00 42.29 5.25
51 52 2.245159 TTGTTCCTCTCAGTGTGCTG 57.755 50.000 0.00 0.00 43.87 4.41
52 53 3.834813 TCTATTGTTCCTCTCAGTGTGCT 59.165 43.478 0.00 0.00 0.00 4.40
53 54 4.193826 TCTATTGTTCCTCTCAGTGTGC 57.806 45.455 0.00 0.00 0.00 4.57
54 55 5.809562 GTCATCTATTGTTCCTCTCAGTGTG 59.190 44.000 0.00 0.00 0.00 3.82
55 56 5.393569 CGTCATCTATTGTTCCTCTCAGTGT 60.394 44.000 0.00 0.00 0.00 3.55
56 57 5.039984 CGTCATCTATTGTTCCTCTCAGTG 58.960 45.833 0.00 0.00 0.00 3.66
57 58 4.098654 CCGTCATCTATTGTTCCTCTCAGT 59.901 45.833 0.00 0.00 0.00 3.41
58 59 4.615949 CCGTCATCTATTGTTCCTCTCAG 58.384 47.826 0.00 0.00 0.00 3.35
59 60 3.181475 GCCGTCATCTATTGTTCCTCTCA 60.181 47.826 0.00 0.00 0.00 3.27
60 61 3.068873 AGCCGTCATCTATTGTTCCTCTC 59.931 47.826 0.00 0.00 0.00 3.20
61 62 3.034635 AGCCGTCATCTATTGTTCCTCT 58.965 45.455 0.00 0.00 0.00 3.69
62 63 3.460857 AGCCGTCATCTATTGTTCCTC 57.539 47.619 0.00 0.00 0.00 3.71
63 64 3.322254 CCTAGCCGTCATCTATTGTTCCT 59.678 47.826 0.00 0.00 0.00 3.36
64 65 3.555168 CCCTAGCCGTCATCTATTGTTCC 60.555 52.174 0.00 0.00 0.00 3.62
65 66 3.069729 ACCCTAGCCGTCATCTATTGTTC 59.930 47.826 0.00 0.00 0.00 3.18
66 67 3.039011 ACCCTAGCCGTCATCTATTGTT 58.961 45.455 0.00 0.00 0.00 2.83
67 68 2.679082 ACCCTAGCCGTCATCTATTGT 58.321 47.619 0.00 0.00 0.00 2.71
68 69 3.181465 ACAACCCTAGCCGTCATCTATTG 60.181 47.826 0.00 0.00 0.00 1.90
69 70 3.039011 ACAACCCTAGCCGTCATCTATT 58.961 45.455 0.00 0.00 0.00 1.73
70 71 2.365617 CACAACCCTAGCCGTCATCTAT 59.634 50.000 0.00 0.00 0.00 1.98
71 72 1.754803 CACAACCCTAGCCGTCATCTA 59.245 52.381 0.00 0.00 0.00 1.98
72 73 0.537188 CACAACCCTAGCCGTCATCT 59.463 55.000 0.00 0.00 0.00 2.90
73 74 1.090052 GCACAACCCTAGCCGTCATC 61.090 60.000 0.00 0.00 0.00 2.92
74 75 1.078426 GCACAACCCTAGCCGTCAT 60.078 57.895 0.00 0.00 0.00 3.06
75 76 2.046009 TTGCACAACCCTAGCCGTCA 62.046 55.000 0.00 0.00 0.00 4.35
76 77 1.298859 CTTGCACAACCCTAGCCGTC 61.299 60.000 0.00 0.00 0.00 4.79
77 78 1.302511 CTTGCACAACCCTAGCCGT 60.303 57.895 0.00 0.00 0.00 5.68
78 79 2.040544 CCTTGCACAACCCTAGCCG 61.041 63.158 0.00 0.00 0.00 5.52
79 80 0.678048 CTCCTTGCACAACCCTAGCC 60.678 60.000 0.00 0.00 0.00 3.93
80 81 0.678048 CCTCCTTGCACAACCCTAGC 60.678 60.000 0.00 0.00 0.00 3.42
81 82 0.035056 CCCTCCTTGCACAACCCTAG 60.035 60.000 0.00 0.00 0.00 3.02
82 83 0.474854 TCCCTCCTTGCACAACCCTA 60.475 55.000 0.00 0.00 0.00 3.53
83 84 1.774217 TCCCTCCTTGCACAACCCT 60.774 57.895 0.00 0.00 0.00 4.34
84 85 1.303643 CTCCCTCCTTGCACAACCC 60.304 63.158 0.00 0.00 0.00 4.11
85 86 0.890996 CACTCCCTCCTTGCACAACC 60.891 60.000 0.00 0.00 0.00 3.77
86 87 0.108585 TCACTCCCTCCTTGCACAAC 59.891 55.000 0.00 0.00 0.00 3.32
87 88 0.843309 TTCACTCCCTCCTTGCACAA 59.157 50.000 0.00 0.00 0.00 3.33
88 89 1.067295 ATTCACTCCCTCCTTGCACA 58.933 50.000 0.00 0.00 0.00 4.57
89 90 2.087646 GAATTCACTCCCTCCTTGCAC 58.912 52.381 0.00 0.00 0.00 4.57
90 91 1.339055 CGAATTCACTCCCTCCTTGCA 60.339 52.381 6.22 0.00 0.00 4.08
91 92 1.339151 ACGAATTCACTCCCTCCTTGC 60.339 52.381 6.22 0.00 0.00 4.01
92 93 2.028112 TGACGAATTCACTCCCTCCTTG 60.028 50.000 6.22 0.00 0.00 3.61
93 94 2.257207 TGACGAATTCACTCCCTCCTT 58.743 47.619 6.22 0.00 0.00 3.36
94 95 1.938585 TGACGAATTCACTCCCTCCT 58.061 50.000 6.22 0.00 0.00 3.69
95 96 2.289444 TGTTGACGAATTCACTCCCTCC 60.289 50.000 6.22 0.00 32.26 4.30
96 97 3.040147 TGTTGACGAATTCACTCCCTC 57.960 47.619 6.22 0.00 32.26 4.30
97 98 3.338249 CATGTTGACGAATTCACTCCCT 58.662 45.455 6.22 0.00 32.26 4.20
98 99 2.159517 GCATGTTGACGAATTCACTCCC 60.160 50.000 6.22 0.00 32.26 4.30
99 100 2.483877 TGCATGTTGACGAATTCACTCC 59.516 45.455 6.22 0.00 32.26 3.85
100 101 3.811722 TGCATGTTGACGAATTCACTC 57.188 42.857 6.22 0.00 32.26 3.51
101 102 3.606846 CGTTGCATGTTGACGAATTCACT 60.607 43.478 6.22 0.00 38.99 3.41
102 103 2.651703 CGTTGCATGTTGACGAATTCAC 59.348 45.455 6.22 0.00 38.99 3.18
103 104 2.914861 CGTTGCATGTTGACGAATTCA 58.085 42.857 6.22 0.00 38.99 2.57
104 105 1.643810 GCGTTGCATGTTGACGAATTC 59.356 47.619 11.83 0.00 38.99 2.17
105 106 1.685302 GCGTTGCATGTTGACGAATT 58.315 45.000 11.83 0.00 38.99 2.17
106 107 0.452618 CGCGTTGCATGTTGACGAAT 60.453 50.000 11.83 0.00 38.99 3.34
107 108 1.083080 CGCGTTGCATGTTGACGAA 60.083 52.632 11.83 0.00 38.99 3.85
108 109 2.548787 CGCGTTGCATGTTGACGA 59.451 55.556 11.83 0.00 38.99 4.20
109 110 3.158813 GCGCGTTGCATGTTGACG 61.159 61.111 8.43 3.54 45.45 4.35
110 111 3.158813 CGCGCGTTGCATGTTGAC 61.159 61.111 24.19 0.00 46.97 3.18
132 133 4.980805 TTCCGCCTGCCACGTCAC 62.981 66.667 0.00 0.00 0.00 3.67
133 134 4.680237 CTTCCGCCTGCCACGTCA 62.680 66.667 0.00 0.00 0.00 4.35
134 135 4.373116 TCTTCCGCCTGCCACGTC 62.373 66.667 0.00 0.00 0.00 4.34
135 136 4.379243 CTCTTCCGCCTGCCACGT 62.379 66.667 0.00 0.00 0.00 4.49
137 138 3.672295 CTCCTCTTCCGCCTGCCAC 62.672 68.421 0.00 0.00 0.00 5.01
138 139 3.393970 CTCCTCTTCCGCCTGCCA 61.394 66.667 0.00 0.00 0.00 4.92
139 140 4.168291 CCTCCTCTTCCGCCTGCC 62.168 72.222 0.00 0.00 0.00 4.85
140 141 3.077556 TCCTCCTCTTCCGCCTGC 61.078 66.667 0.00 0.00 0.00 4.85
141 142 3.087666 GCTCCTCCTCTTCCGCCTG 62.088 68.421 0.00 0.00 0.00 4.85
142 143 2.762043 GCTCCTCCTCTTCCGCCT 60.762 66.667 0.00 0.00 0.00 5.52
143 144 4.214327 CGCTCCTCCTCTTCCGCC 62.214 72.222 0.00 0.00 0.00 6.13
144 145 4.882396 GCGCTCCTCCTCTTCCGC 62.882 72.222 0.00 0.00 34.50 5.54
145 146 4.560856 CGCGCTCCTCCTCTTCCG 62.561 72.222 5.56 0.00 0.00 4.30
146 147 3.453679 ACGCGCTCCTCCTCTTCC 61.454 66.667 5.73 0.00 0.00 3.46
147 148 2.202676 CACGCGCTCCTCCTCTTC 60.203 66.667 5.73 0.00 0.00 2.87
148 149 2.992114 ACACGCGCTCCTCCTCTT 60.992 61.111 5.73 0.00 0.00 2.85
149 150 3.753434 CACACGCGCTCCTCCTCT 61.753 66.667 5.73 0.00 0.00 3.69
150 151 4.057428 ACACACGCGCTCCTCCTC 62.057 66.667 5.73 0.00 0.00 3.71
151 152 4.363990 CACACACGCGCTCCTCCT 62.364 66.667 5.73 0.00 0.00 3.69
154 155 4.908687 TTGCACACACGCGCTCCT 62.909 61.111 5.73 0.00 33.35 3.69
155 156 2.731587 AAATTGCACACACGCGCTCC 62.732 55.000 5.73 0.00 33.35 4.70
156 157 1.330080 GAAATTGCACACACGCGCTC 61.330 55.000 5.73 0.00 33.35 5.03
157 158 1.370414 GAAATTGCACACACGCGCT 60.370 52.632 5.73 0.00 33.35 5.92
158 159 0.934436 AAGAAATTGCACACACGCGC 60.934 50.000 5.73 0.00 33.35 6.86
159 160 1.476074 AAAGAAATTGCACACACGCG 58.524 45.000 3.53 3.53 33.35 6.01
160 161 3.302415 GGAAAAAGAAATTGCACACACGC 60.302 43.478 0.00 0.00 0.00 5.34
161 162 3.862267 TGGAAAAAGAAATTGCACACACG 59.138 39.130 0.00 0.00 0.00 4.49
162 163 5.727515 GCTTGGAAAAAGAAATTGCACACAC 60.728 40.000 0.00 0.00 0.00 3.82
163 164 4.332268 GCTTGGAAAAAGAAATTGCACACA 59.668 37.500 0.00 0.00 0.00 3.72
164 165 4.571984 AGCTTGGAAAAAGAAATTGCACAC 59.428 37.500 0.00 0.00 0.00 3.82
165 166 4.768583 AGCTTGGAAAAAGAAATTGCACA 58.231 34.783 0.00 0.00 0.00 4.57
166 167 4.084900 CGAGCTTGGAAAAAGAAATTGCAC 60.085 41.667 0.00 0.00 0.00 4.57
167 168 4.050553 CGAGCTTGGAAAAAGAAATTGCA 58.949 39.130 0.00 0.00 0.00 4.08
168 169 3.120889 GCGAGCTTGGAAAAAGAAATTGC 60.121 43.478 2.37 0.00 0.00 3.56
169 170 4.050553 TGCGAGCTTGGAAAAAGAAATTG 58.949 39.130 2.37 0.00 0.00 2.32
170 171 4.320608 TGCGAGCTTGGAAAAAGAAATT 57.679 36.364 2.37 0.00 0.00 1.82
171 172 4.320608 TTGCGAGCTTGGAAAAAGAAAT 57.679 36.364 5.26 0.00 0.00 2.17
172 173 3.791973 TTGCGAGCTTGGAAAAAGAAA 57.208 38.095 5.26 0.00 0.00 2.52
173 174 3.552684 CCATTGCGAGCTTGGAAAAAGAA 60.553 43.478 12.37 0.00 31.94 2.52
174 175 2.030007 CCATTGCGAGCTTGGAAAAAGA 60.030 45.455 12.37 0.00 31.94 2.52
175 176 2.331194 CCATTGCGAGCTTGGAAAAAG 58.669 47.619 12.37 5.48 31.94 2.27
176 177 1.605202 GCCATTGCGAGCTTGGAAAAA 60.605 47.619 12.37 0.00 31.94 1.94
177 178 0.038343 GCCATTGCGAGCTTGGAAAA 60.038 50.000 12.37 0.00 31.94 2.29
178 179 1.177895 TGCCATTGCGAGCTTGGAAA 61.178 50.000 12.37 0.00 41.78 3.13
179 180 0.966875 ATGCCATTGCGAGCTTGGAA 60.967 50.000 10.66 10.66 41.78 3.53
180 181 1.378911 ATGCCATTGCGAGCTTGGA 60.379 52.632 17.50 0.00 41.78 3.53
181 182 1.226859 CATGCCATTGCGAGCTTGG 60.227 57.895 2.37 11.49 41.78 3.61
182 183 0.800683 CACATGCCATTGCGAGCTTG 60.801 55.000 0.00 0.00 41.78 4.01
183 184 1.509463 CACATGCCATTGCGAGCTT 59.491 52.632 0.00 0.00 41.78 3.74
184 185 2.412323 CCACATGCCATTGCGAGCT 61.412 57.895 0.00 0.00 41.78 4.09
185 186 1.375853 TACCACATGCCATTGCGAGC 61.376 55.000 0.00 0.00 41.78 5.03
186 187 0.659427 CTACCACATGCCATTGCGAG 59.341 55.000 0.00 0.00 41.78 5.03
187 188 0.251634 TCTACCACATGCCATTGCGA 59.748 50.000 0.00 0.00 41.78 5.10
188 189 0.659427 CTCTACCACATGCCATTGCG 59.341 55.000 0.00 0.00 41.78 4.85
189 190 0.383231 GCTCTACCACATGCCATTGC 59.617 55.000 0.00 0.00 38.26 3.56
190 191 1.402968 GTGCTCTACCACATGCCATTG 59.597 52.381 0.00 0.00 35.80 2.82
191 192 1.283029 AGTGCTCTACCACATGCCATT 59.717 47.619 0.00 0.00 38.18 3.16
192 193 0.914644 AGTGCTCTACCACATGCCAT 59.085 50.000 0.00 0.00 38.18 4.40
193 194 0.692476 AAGTGCTCTACCACATGCCA 59.308 50.000 0.00 0.00 38.18 4.92
194 195 2.691409 TAAGTGCTCTACCACATGCC 57.309 50.000 0.00 0.00 38.18 4.40
195 196 6.049149 TCTTTATAAGTGCTCTACCACATGC 58.951 40.000 0.00 0.00 38.18 4.06
196 197 6.703607 CCTCTTTATAAGTGCTCTACCACATG 59.296 42.308 0.00 0.00 38.18 3.21
197 198 6.384305 ACCTCTTTATAAGTGCTCTACCACAT 59.616 38.462 0.00 0.00 38.18 3.21
198 199 5.720041 ACCTCTTTATAAGTGCTCTACCACA 59.280 40.000 0.00 0.00 38.18 4.17
199 200 6.097129 AGACCTCTTTATAAGTGCTCTACCAC 59.903 42.308 0.00 0.00 35.98 4.16
200 201 6.195700 AGACCTCTTTATAAGTGCTCTACCA 58.804 40.000 0.00 0.00 0.00 3.25
201 202 6.321690 TGAGACCTCTTTATAAGTGCTCTACC 59.678 42.308 0.00 0.00 0.00 3.18
202 203 7.067737 AGTGAGACCTCTTTATAAGTGCTCTAC 59.932 40.741 0.00 0.00 0.00 2.59
203 204 7.120051 AGTGAGACCTCTTTATAAGTGCTCTA 58.880 38.462 0.00 0.00 0.00 2.43
204 205 5.955355 AGTGAGACCTCTTTATAAGTGCTCT 59.045 40.000 0.00 0.00 0.00 4.09
205 206 6.096282 AGAGTGAGACCTCTTTATAAGTGCTC 59.904 42.308 0.00 0.00 38.69 4.26
206 207 5.955355 AGAGTGAGACCTCTTTATAAGTGCT 59.045 40.000 0.00 0.00 38.69 4.40
207 208 6.215495 AGAGTGAGACCTCTTTATAAGTGC 57.785 41.667 0.00 0.00 38.69 4.40
217 218 4.601406 ATGGAGTAAGAGTGAGACCTCT 57.399 45.455 0.00 0.00 43.65 3.69
218 219 5.221165 GCTAATGGAGTAAGAGTGAGACCTC 60.221 48.000 0.00 0.00 0.00 3.85
219 220 4.647399 GCTAATGGAGTAAGAGTGAGACCT 59.353 45.833 0.00 0.00 0.00 3.85
220 221 4.402793 TGCTAATGGAGTAAGAGTGAGACC 59.597 45.833 0.00 0.00 0.00 3.85
221 222 5.584253 TGCTAATGGAGTAAGAGTGAGAC 57.416 43.478 0.00 0.00 0.00 3.36
222 223 6.798427 ATTGCTAATGGAGTAAGAGTGAGA 57.202 37.500 0.00 0.00 32.82 3.27
223 224 7.601886 CCATATTGCTAATGGAGTAAGAGTGAG 59.398 40.741 6.68 0.00 45.77 3.51
224 225 7.071196 ACCATATTGCTAATGGAGTAAGAGTGA 59.929 37.037 16.32 0.00 45.77 3.41
225 226 7.220030 ACCATATTGCTAATGGAGTAAGAGTG 58.780 38.462 16.32 0.00 45.77 3.51
226 227 7.380423 ACCATATTGCTAATGGAGTAAGAGT 57.620 36.000 16.32 0.00 45.77 3.24
227 228 8.589338 AGTACCATATTGCTAATGGAGTAAGAG 58.411 37.037 16.32 0.00 45.77 2.85
228 229 8.492415 AGTACCATATTGCTAATGGAGTAAGA 57.508 34.615 16.32 0.00 45.77 2.10
240 241 9.851686 TGATGAGAAATTTAGTACCATATTGCT 57.148 29.630 0.00 0.00 0.00 3.91
241 242 9.884465 GTGATGAGAAATTTAGTACCATATTGC 57.116 33.333 0.00 0.00 0.00 3.56
251 252 9.399797 TGCATGATAAGTGATGAGAAATTTAGT 57.600 29.630 0.00 0.00 0.00 2.24
254 255 9.132923 AGATGCATGATAAGTGATGAGAAATTT 57.867 29.630 2.46 0.00 0.00 1.82
255 256 8.693120 AGATGCATGATAAGTGATGAGAAATT 57.307 30.769 2.46 0.00 0.00 1.82
256 257 9.788889 TTAGATGCATGATAAGTGATGAGAAAT 57.211 29.630 2.46 0.00 0.00 2.17
257 258 9.617523 TTTAGATGCATGATAAGTGATGAGAAA 57.382 29.630 2.46 0.00 0.00 2.52
258 259 9.788889 ATTTAGATGCATGATAAGTGATGAGAA 57.211 29.630 2.46 0.00 0.00 2.87
259 260 9.216117 CATTTAGATGCATGATAAGTGATGAGA 57.784 33.333 2.46 0.00 0.00 3.27
260 261 8.451748 CCATTTAGATGCATGATAAGTGATGAG 58.548 37.037 18.17 5.19 31.67 2.90
261 262 7.392393 CCCATTTAGATGCATGATAAGTGATGA 59.608 37.037 18.17 0.46 31.67 2.92
262 263 7.535997 CCCATTTAGATGCATGATAAGTGATG 58.464 38.462 18.17 11.64 31.67 3.07
263 264 6.152323 GCCCATTTAGATGCATGATAAGTGAT 59.848 38.462 18.17 3.27 31.67 3.06
264 265 5.474532 GCCCATTTAGATGCATGATAAGTGA 59.525 40.000 18.17 1.53 31.67 3.41
265 266 5.336213 GGCCCATTTAGATGCATGATAAGTG 60.336 44.000 2.46 9.97 31.67 3.16
266 267 4.768968 GGCCCATTTAGATGCATGATAAGT 59.231 41.667 2.46 0.00 31.67 2.24
267 268 5.014858 AGGCCCATTTAGATGCATGATAAG 58.985 41.667 2.46 0.00 31.67 1.73
268 269 5.001833 AGGCCCATTTAGATGCATGATAA 57.998 39.130 2.46 0.00 31.67 1.75
269 270 4.662966 AGGCCCATTTAGATGCATGATA 57.337 40.909 2.46 0.00 31.67 2.15
270 271 3.537795 AGGCCCATTTAGATGCATGAT 57.462 42.857 2.46 0.00 31.67 2.45
271 272 3.317455 AAGGCCCATTTAGATGCATGA 57.683 42.857 2.46 0.00 31.67 3.07
272 273 5.302568 TCTTTAAGGCCCATTTAGATGCATG 59.697 40.000 2.46 0.00 31.67 4.06
273 274 5.457686 TCTTTAAGGCCCATTTAGATGCAT 58.542 37.500 0.00 0.00 31.67 3.96
274 275 4.865905 TCTTTAAGGCCCATTTAGATGCA 58.134 39.130 0.00 0.00 31.67 3.96
275 276 6.410942 AATCTTTAAGGCCCATTTAGATGC 57.589 37.500 0.00 0.00 31.67 3.91
280 281 9.374711 CCCTAATTAATCTTTAAGGCCCATTTA 57.625 33.333 0.00 0.00 0.00 1.40
281 282 8.071229 TCCCTAATTAATCTTTAAGGCCCATTT 58.929 33.333 0.00 0.00 0.00 2.32
282 283 7.601017 TCCCTAATTAATCTTTAAGGCCCATT 58.399 34.615 0.00 0.00 0.00 3.16
283 284 7.174363 TCCCTAATTAATCTTTAAGGCCCAT 57.826 36.000 0.00 0.00 0.00 4.00
284 285 6.599986 TCCCTAATTAATCTTTAAGGCCCA 57.400 37.500 0.00 0.00 0.00 5.36
285 286 9.769677 ATAATCCCTAATTAATCTTTAAGGCCC 57.230 33.333 0.00 0.00 33.59 5.80
300 301 9.488762 TCGTCATATAGGACAATAATCCCTAAT 57.511 33.333 17.02 0.00 39.91 1.73
301 302 8.888836 TCGTCATATAGGACAATAATCCCTAA 57.111 34.615 17.02 0.00 39.91 2.69
302 303 8.888836 TTCGTCATATAGGACAATAATCCCTA 57.111 34.615 17.02 0.00 39.91 3.53
303 304 7.792364 TTCGTCATATAGGACAATAATCCCT 57.208 36.000 17.02 0.00 39.91 4.20
304 305 7.064728 GCTTTCGTCATATAGGACAATAATCCC 59.935 40.741 17.02 0.00 39.91 3.85
305 306 7.064728 GGCTTTCGTCATATAGGACAATAATCC 59.935 40.741 17.02 8.70 37.66 3.01
306 307 7.064728 GGGCTTTCGTCATATAGGACAATAATC 59.935 40.741 17.02 4.14 37.66 1.75
307 308 6.879458 GGGCTTTCGTCATATAGGACAATAAT 59.121 38.462 17.02 0.00 37.66 1.28
308 309 6.183361 TGGGCTTTCGTCATATAGGACAATAA 60.183 38.462 17.02 5.76 37.66 1.40
309 310 5.305902 TGGGCTTTCGTCATATAGGACAATA 59.694 40.000 17.02 0.00 37.66 1.90
310 311 4.102524 TGGGCTTTCGTCATATAGGACAAT 59.897 41.667 17.02 0.00 37.66 2.71
311 312 3.452990 TGGGCTTTCGTCATATAGGACAA 59.547 43.478 17.02 8.01 37.66 3.18
312 313 3.035363 TGGGCTTTCGTCATATAGGACA 58.965 45.455 17.02 2.50 37.66 4.02
313 314 3.746045 TGGGCTTTCGTCATATAGGAC 57.254 47.619 7.47 7.47 34.42 3.85
314 315 4.160329 AGATGGGCTTTCGTCATATAGGA 58.840 43.478 0.00 0.00 0.00 2.94
315 316 4.543590 AGATGGGCTTTCGTCATATAGG 57.456 45.455 0.00 0.00 0.00 2.57
316 317 9.469807 GATTATAGATGGGCTTTCGTCATATAG 57.530 37.037 0.00 0.00 0.00 1.31
317 318 8.421784 GGATTATAGATGGGCTTTCGTCATATA 58.578 37.037 0.00 0.00 0.00 0.86
318 319 7.092891 TGGATTATAGATGGGCTTTCGTCATAT 60.093 37.037 0.00 0.00 0.00 1.78
319 320 6.212589 TGGATTATAGATGGGCTTTCGTCATA 59.787 38.462 0.00 0.00 0.00 2.15
320 321 5.013079 TGGATTATAGATGGGCTTTCGTCAT 59.987 40.000 0.00 0.00 0.00 3.06
321 322 4.346709 TGGATTATAGATGGGCTTTCGTCA 59.653 41.667 0.00 0.00 0.00 4.35
322 323 4.894784 TGGATTATAGATGGGCTTTCGTC 58.105 43.478 0.00 0.00 0.00 4.20
323 324 4.974645 TGGATTATAGATGGGCTTTCGT 57.025 40.909 0.00 0.00 0.00 3.85
324 325 5.063204 TGTTGGATTATAGATGGGCTTTCG 58.937 41.667 0.00 0.00 0.00 3.46
325 326 5.474876 CCTGTTGGATTATAGATGGGCTTTC 59.525 44.000 0.00 0.00 34.57 2.62
326 327 5.103515 ACCTGTTGGATTATAGATGGGCTTT 60.104 40.000 0.00 0.00 37.04 3.51
327 328 4.416848 ACCTGTTGGATTATAGATGGGCTT 59.583 41.667 0.00 0.00 37.04 4.35
328 329 3.983410 ACCTGTTGGATTATAGATGGGCT 59.017 43.478 0.00 0.00 37.04 5.19
329 330 4.202461 TGACCTGTTGGATTATAGATGGGC 60.202 45.833 0.00 0.00 37.04 5.36
330 331 5.567037 TGACCTGTTGGATTATAGATGGG 57.433 43.478 0.00 0.00 37.04 4.00
331 332 6.484643 CAGTTGACCTGTTGGATTATAGATGG 59.515 42.308 0.00 0.00 36.37 3.51
332 333 7.488187 CAGTTGACCTGTTGGATTATAGATG 57.512 40.000 0.00 0.00 36.37 2.90
347 348 1.131638 TCCAGCTCAACAGTTGACCT 58.868 50.000 12.24 8.57 32.65 3.85
348 349 2.191128 ATCCAGCTCAACAGTTGACC 57.809 50.000 12.24 6.19 32.65 4.02
349 350 2.351157 GCAATCCAGCTCAACAGTTGAC 60.351 50.000 12.24 9.38 32.65 3.18
350 351 1.881973 GCAATCCAGCTCAACAGTTGA 59.118 47.619 15.39 15.39 32.65 3.18
351 352 1.068055 GGCAATCCAGCTCAACAGTTG 60.068 52.381 6.99 6.99 34.17 3.16
352 353 1.202976 AGGCAATCCAGCTCAACAGTT 60.203 47.619 0.00 0.00 33.74 3.16
353 354 0.403271 AGGCAATCCAGCTCAACAGT 59.597 50.000 0.00 0.00 33.74 3.55
354 355 2.408271 TAGGCAATCCAGCTCAACAG 57.592 50.000 0.00 0.00 33.74 3.16
355 356 2.877097 TTAGGCAATCCAGCTCAACA 57.123 45.000 0.00 0.00 33.74 3.33
356 357 4.519540 TTTTTAGGCAATCCAGCTCAAC 57.480 40.909 0.00 0.00 33.74 3.18
435 436 5.822519 GTGCAAATGGTACTTGATCTATCCA 59.177 40.000 0.00 0.00 0.00 3.41
441 442 4.764679 TGTGTGCAAATGGTACTTGATC 57.235 40.909 0.00 0.00 32.71 2.92
443 444 5.528043 AATTGTGTGCAAATGGTACTTGA 57.472 34.783 0.00 0.00 38.21 3.02
444 445 5.107913 CGAAATTGTGTGCAAATGGTACTTG 60.108 40.000 0.00 0.00 38.21 3.16
455 456 3.724508 ATTTGTCCGAAATTGTGTGCA 57.275 38.095 0.00 0.00 0.00 4.57
491 492 3.146066 GTGGTTAGCTTGTTCCATGTGA 58.854 45.455 0.00 0.00 32.45 3.58
508 509 1.685224 CACATAGGGGCAGTGTGGT 59.315 57.895 0.00 0.00 39.54 4.16
546 547 2.030805 GGAAACAACACTCATGGTCTGC 60.031 50.000 0.00 0.00 0.00 4.26
586 588 8.234546 GGCGTTTCGTATATGGAATTATCAATT 58.765 33.333 0.00 0.00 0.00 2.32
617 3388 4.259970 CCAGTTTTCATTGTAGCGATCTCG 60.260 45.833 0.00 0.00 43.27 4.04
620 3391 4.631813 ACTCCAGTTTTCATTGTAGCGATC 59.368 41.667 0.00 0.00 0.00 3.69
630 3401 6.317391 GCAATCTTAGCTACTCCAGTTTTCAT 59.683 38.462 0.00 0.00 0.00 2.57
638 3409 4.517285 CCTTTGCAATCTTAGCTACTCCA 58.483 43.478 0.00 0.00 0.00 3.86
639 3410 3.313803 GCCTTTGCAATCTTAGCTACTCC 59.686 47.826 0.00 0.00 37.47 3.85
640 3411 3.941483 TGCCTTTGCAATCTTAGCTACTC 59.059 43.478 0.00 0.00 46.66 2.59
641 3412 3.955471 TGCCTTTGCAATCTTAGCTACT 58.045 40.909 0.00 0.00 46.66 2.57
671 3442 0.791422 CCGTATTTTCCGCGTTGACA 59.209 50.000 4.92 0.00 0.00 3.58
688 3459 3.243068 GCTTGAGCAATGGTAATAACCCG 60.243 47.826 0.00 0.00 42.36 5.28
713 3484 5.278907 CCATTTCCTAATTGCACAAGACACA 60.279 40.000 0.00 0.00 0.00 3.72
715 3486 4.220382 CCCATTTCCTAATTGCACAAGACA 59.780 41.667 0.00 0.00 0.00 3.41
716 3487 4.220602 ACCCATTTCCTAATTGCACAAGAC 59.779 41.667 0.00 0.00 0.00 3.01
738 3509 2.100087 CACCCAACCAACACAGGTAAAC 59.900 50.000 0.00 0.00 42.25 2.01
741 3512 0.466555 GCACCCAACCAACACAGGTA 60.467 55.000 0.00 0.00 42.25 3.08
744 3515 2.721231 CGCACCCAACCAACACAG 59.279 61.111 0.00 0.00 0.00 3.66
765 3536 0.958382 GTAGGTGCATGTGCCCGAAA 60.958 55.000 2.07 0.00 41.18 3.46
823 3594 6.105333 GCCATAGAAGAATATGCTCCTGTAG 58.895 44.000 0.00 0.00 32.74 2.74
825 3596 4.349048 TGCCATAGAAGAATATGCTCCTGT 59.651 41.667 0.00 0.00 32.74 4.00
895 3666 1.301423 TTGGAGGTTCCGTTGTTTCG 58.699 50.000 0.00 0.00 40.17 3.46
896 3667 2.223641 GGTTTGGAGGTTCCGTTGTTTC 60.224 50.000 0.00 0.00 40.17 2.78
950 3722 1.079127 ACTATGACGCTGCACCACC 60.079 57.895 0.00 0.00 0.00 4.61
1272 4065 2.050836 TTGCTCCTCGCTGGGAACAA 62.051 55.000 6.57 6.57 42.06 2.83
1987 4783 2.180276 GAGCTCTCCAGGAACACCTTA 58.820 52.381 6.43 0.00 30.75 2.69
2353 5149 4.936802 AGTTGATCACTAGACACTAGGGT 58.063 43.478 0.00 0.00 31.97 4.34
2533 5347 1.071019 AGCATGCGTACGAGTGAACG 61.071 55.000 21.65 0.14 41.92 3.95
2629 5443 7.991460 ACTCTGCTTACCAAAGTAGTAGTTTTT 59.009 33.333 0.00 0.00 43.63 1.94
2630 5444 7.441458 CACTCTGCTTACCAAAGTAGTAGTTTT 59.559 37.037 0.00 0.00 43.63 2.43
2631 5445 6.929606 CACTCTGCTTACCAAAGTAGTAGTTT 59.070 38.462 0.00 0.00 43.63 2.66
2632 5446 6.456501 CACTCTGCTTACCAAAGTAGTAGTT 58.543 40.000 3.67 0.00 43.63 2.24
2633 5447 5.047235 CCACTCTGCTTACCAAAGTAGTAGT 60.047 44.000 3.67 3.90 43.63 2.73
2634 5448 5.411781 CCACTCTGCTTACCAAAGTAGTAG 58.588 45.833 3.67 3.42 43.63 2.57
2635 5449 4.322499 GCCACTCTGCTTACCAAAGTAGTA 60.322 45.833 3.67 0.00 43.63 1.82
2636 5450 3.557264 GCCACTCTGCTTACCAAAGTAGT 60.557 47.826 3.67 0.00 43.63 2.73
2641 5455 1.142870 AGTGCCACTCTGCTTACCAAA 59.857 47.619 0.00 0.00 0.00 3.28
2813 5707 0.245539 CAATTGCAAGGAGGTGCTGG 59.754 55.000 4.94 0.00 45.17 4.85
2854 5748 4.526650 TCCAGTTCTACATGCTACAGTCAA 59.473 41.667 0.00 0.00 0.00 3.18
2863 5757 6.595716 ACAGTCTTTATTCCAGTTCTACATGC 59.404 38.462 0.00 0.00 0.00 4.06
2968 5862 5.560966 ATGTAACGGAAATGTGGTTGATC 57.439 39.130 0.00 0.00 0.00 2.92
3021 5915 9.846248 TTTCCTACTTTACTAGTACGAATGTTC 57.154 33.333 0.91 0.00 35.61 3.18
3036 5930 6.930068 AACCAGAGCTAGTTTCCTACTTTA 57.070 37.500 0.00 0.00 38.33 1.85
3040 5934 5.334957 GCAAAAACCAGAGCTAGTTTCCTAC 60.335 44.000 8.87 0.00 35.19 3.18
3041 5935 4.760204 GCAAAAACCAGAGCTAGTTTCCTA 59.240 41.667 8.87 0.00 35.19 2.94
3042 5936 3.570125 GCAAAAACCAGAGCTAGTTTCCT 59.430 43.478 8.87 0.00 35.19 3.36
3043 5937 3.609409 CGCAAAAACCAGAGCTAGTTTCC 60.609 47.826 8.87 2.44 35.19 3.13
3044 5938 3.555518 CGCAAAAACCAGAGCTAGTTTC 58.444 45.455 8.87 0.00 35.19 2.78
3045 5939 2.287608 GCGCAAAAACCAGAGCTAGTTT 60.288 45.455 0.30 3.75 37.80 2.66
3046 5940 1.266989 GCGCAAAAACCAGAGCTAGTT 59.733 47.619 0.30 0.00 0.00 2.24
3047 5941 0.875059 GCGCAAAAACCAGAGCTAGT 59.125 50.000 0.30 0.00 0.00 2.57
3057 5951 4.148174 GGAATAACTGTCAAGCGCAAAAAC 59.852 41.667 11.47 2.39 0.00 2.43
3066 5960 2.699954 AGGTGCGGAATAACTGTCAAG 58.300 47.619 0.00 0.00 0.00 3.02
3073 5967 0.098200 GGCGAAAGGTGCGGAATAAC 59.902 55.000 0.00 0.00 0.00 1.89
3170 6064 1.826385 ATTGTTAGCACCAGCAGACC 58.174 50.000 0.00 0.00 45.49 3.85
3269 6163 3.313874 CTGGAAGGCGACCTGGAT 58.686 61.111 0.00 0.00 32.13 3.41
3377 6271 6.432472 TGCAACTACATTGTTCATATGGTCAA 59.568 34.615 2.13 9.05 40.77 3.18
3381 6275 6.210796 CCATGCAACTACATTGTTCATATGG 58.789 40.000 2.13 0.00 40.77 2.74
3382 6276 5.688621 GCCATGCAACTACATTGTTCATATG 59.311 40.000 0.00 0.00 40.77 1.78
3384 6278 4.704057 TGCCATGCAACTACATTGTTCATA 59.296 37.500 0.00 0.00 40.77 2.15
3385 6279 3.510753 TGCCATGCAACTACATTGTTCAT 59.489 39.130 0.00 0.00 40.77 2.57
3505 7305 8.103935 AGGATAAACTTAGAACTTTAGCTTGCT 58.896 33.333 0.00 0.00 0.00 3.91
3556 7356 7.329471 GTGAGGCTTCCATTTTTCAAGATTAAC 59.671 37.037 0.00 0.00 0.00 2.01
3564 7364 2.892852 CAGGTGAGGCTTCCATTTTTCA 59.107 45.455 11.24 0.00 0.00 2.69
3569 7369 1.065126 GCTACAGGTGAGGCTTCCATT 60.065 52.381 11.24 1.84 0.00 3.16
3628 7428 0.165295 CAGAGCACACGCAATCACTG 59.835 55.000 0.00 0.00 42.27 3.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.