Multiple sequence alignment - TraesCS4A01G119500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G119500 chr4A 100.000 4151 0 0 1 4151 147535606 147531456 0.000000e+00 7666
1 TraesCS4A01G119500 chr4A 96.089 358 12 2 3793 4149 56464267 56464623 2.150000e-162 582
2 TraesCS4A01G119500 chr7A 98.328 2931 47 2 863 3792 542715795 542718724 0.000000e+00 5140
3 TraesCS4A01G119500 chr7A 97.605 877 9 4 1 865 542714893 542715769 0.000000e+00 1493
4 TraesCS4A01G119500 chr7A 95.045 888 21 3 1 865 660572356 660573243 0.000000e+00 1375
5 TraesCS4A01G119500 chr7A 79.863 879 151 22 4 865 60710685 60709816 1.640000e-173 619
6 TraesCS4A01G119500 chr1A 98.261 2932 48 3 863 3792 564158785 564155855 0.000000e+00 5129
7 TraesCS4A01G119500 chr1A 97.719 877 8 1 1 865 564159687 564158811 0.000000e+00 1498
8 TraesCS4A01G119500 chr1A 96.389 360 12 1 3793 4151 202189275 202188916 3.570000e-165 592
9 TraesCS4A01G119500 chr3A 98.090 2932 54 2 863 3793 144698911 144701841 0.000000e+00 5103
10 TraesCS4A01G119500 chr3A 97.067 2932 82 4 863 3793 126052511 126055439 0.000000e+00 4935
11 TraesCS4A01G119500 chr3A 97.605 877 9 1 1 865 144698009 144698885 0.000000e+00 1493
12 TraesCS4A01G119500 chr3A 93.222 900 26 3 1 865 352470581 352471480 0.000000e+00 1291
13 TraesCS4A01G119500 chr3A 96.676 361 10 2 3793 4151 211927120 211926760 2.140000e-167 599
14 TraesCS4A01G119500 chr3A 96.369 358 12 1 3793 4149 364698573 364698216 4.620000e-164 588
15 TraesCS4A01G119500 chr3A 96.111 360 13 1 3793 4151 255374540 255374899 1.660000e-163 586
16 TraesCS4A01G119500 chr3A 80.453 706 136 2 868 1572 110460831 110460127 4.720000e-149 538
17 TraesCS4A01G119500 chr6B 96.691 2931 95 2 863 3792 18466723 18469652 0.000000e+00 4874
18 TraesCS4A01G119500 chr3B 96.486 2931 90 3 863 3792 228016014 228018932 0.000000e+00 4830
19 TraesCS4A01G119500 chr2B 96.655 2870 94 2 925 3793 311909383 311906515 0.000000e+00 4767
20 TraesCS4A01G119500 chr7B 97.000 2300 68 1 863 3162 660103003 660105301 0.000000e+00 3864
21 TraesCS4A01G119500 chr4B 97.018 2280 67 1 1514 3792 167376856 167374577 0.000000e+00 3832
22 TraesCS4A01G119500 chr4B 81.146 785 131 13 4 777 16676780 16677558 7.630000e-172 614
23 TraesCS4A01G119500 chr2D 98.266 865 12 1 1 865 618324215 618323354 0.000000e+00 1511
24 TraesCS4A01G119500 chr6A 95.838 889 13 1 1 865 603906035 603906923 0.000000e+00 1415
25 TraesCS4A01G119500 chr6A 94.463 885 26 3 1 865 435090044 435089163 0.000000e+00 1341
26 TraesCS4A01G119500 chr6A 96.944 360 10 1 3793 4151 544136129 544136488 1.650000e-168 603
27 TraesCS4A01G119500 chr6A 96.111 360 13 1 3793 4151 138964553 138964194 1.660000e-163 586
28 TraesCS4A01G119500 chr6A 96.089 358 13 1 3793 4149 595435725 595435368 2.150000e-162 582
29 TraesCS4A01G119500 chr5D 94.335 865 43 5 1 865 34210788 34211646 0.000000e+00 1321
30 TraesCS4A01G119500 chr1B 93.814 776 42 1 1 770 551241854 551241079 0.000000e+00 1162
31 TraesCS4A01G119500 chr5B 79.750 879 152 21 4 865 320401473 320402342 7.630000e-172 614
32 TraesCS4A01G119500 chr5A 96.369 358 11 2 3793 4149 265343360 265343004 4.620000e-164 588


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G119500 chr4A 147531456 147535606 4150 True 7666.0 7666 100.0000 1 4151 1 chr4A.!!$R1 4150
1 TraesCS4A01G119500 chr7A 542714893 542718724 3831 False 3316.5 5140 97.9665 1 3792 2 chr7A.!!$F2 3791
2 TraesCS4A01G119500 chr7A 660572356 660573243 887 False 1375.0 1375 95.0450 1 865 1 chr7A.!!$F1 864
3 TraesCS4A01G119500 chr7A 60709816 60710685 869 True 619.0 619 79.8630 4 865 1 chr7A.!!$R1 861
4 TraesCS4A01G119500 chr1A 564155855 564159687 3832 True 3313.5 5129 97.9900 1 3792 2 chr1A.!!$R2 3791
5 TraesCS4A01G119500 chr3A 126052511 126055439 2928 False 4935.0 4935 97.0670 863 3793 1 chr3A.!!$F1 2930
6 TraesCS4A01G119500 chr3A 144698009 144701841 3832 False 3298.0 5103 97.8475 1 3793 2 chr3A.!!$F4 3792
7 TraesCS4A01G119500 chr3A 352470581 352471480 899 False 1291.0 1291 93.2220 1 865 1 chr3A.!!$F3 864
8 TraesCS4A01G119500 chr3A 110460127 110460831 704 True 538.0 538 80.4530 868 1572 1 chr3A.!!$R1 704
9 TraesCS4A01G119500 chr6B 18466723 18469652 2929 False 4874.0 4874 96.6910 863 3792 1 chr6B.!!$F1 2929
10 TraesCS4A01G119500 chr3B 228016014 228018932 2918 False 4830.0 4830 96.4860 863 3792 1 chr3B.!!$F1 2929
11 TraesCS4A01G119500 chr2B 311906515 311909383 2868 True 4767.0 4767 96.6550 925 3793 1 chr2B.!!$R1 2868
12 TraesCS4A01G119500 chr7B 660103003 660105301 2298 False 3864.0 3864 97.0000 863 3162 1 chr7B.!!$F1 2299
13 TraesCS4A01G119500 chr4B 167374577 167376856 2279 True 3832.0 3832 97.0180 1514 3792 1 chr4B.!!$R1 2278
14 TraesCS4A01G119500 chr4B 16676780 16677558 778 False 614.0 614 81.1460 4 777 1 chr4B.!!$F1 773
15 TraesCS4A01G119500 chr2D 618323354 618324215 861 True 1511.0 1511 98.2660 1 865 1 chr2D.!!$R1 864
16 TraesCS4A01G119500 chr6A 603906035 603906923 888 False 1415.0 1415 95.8380 1 865 1 chr6A.!!$F2 864
17 TraesCS4A01G119500 chr6A 435089163 435090044 881 True 1341.0 1341 94.4630 1 865 1 chr6A.!!$R2 864
18 TraesCS4A01G119500 chr5D 34210788 34211646 858 False 1321.0 1321 94.3350 1 865 1 chr5D.!!$F1 864
19 TraesCS4A01G119500 chr1B 551241079 551241854 775 True 1162.0 1162 93.8140 1 770 1 chr1B.!!$R1 769
20 TraesCS4A01G119500 chr5B 320401473 320402342 869 False 614.0 614 79.7500 4 865 1 chr5B.!!$F1 861

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
328 356 2.114616 CCCAGTACCTGAGAATGAGCT 58.885 52.381 0.00 0.00 32.44 4.09 F
1099 1223 1.720781 AATTGAAAGTTGCTGCCCCT 58.279 45.000 0.00 0.00 0.00 4.79 F
1408 1532 2.585432 AGGGGTTTAACCATATGCACCT 59.415 45.455 16.58 8.13 41.02 4.00 F
2510 2636 1.340308 TGTGCCTTGTGAGGATGATGG 60.340 52.381 0.00 0.00 46.74 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1633 1757 0.949105 GACCACAACCTAGTGTGCCG 60.949 60.000 7.76 0.0 46.24 5.69 R
2510 2636 0.813210 GCACATAGAGGCTGCTGGAC 60.813 60.000 0.00 0.0 0.00 4.02 R
2978 3104 7.035004 GGCATGTAATTTCAAAGCAACAGATA 58.965 34.615 12.53 0.0 0.00 1.98 R
3961 4089 0.169230 GCTTGAGAGCGACGAAGAGA 59.831 55.000 0.00 0.0 39.48 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
328 356 2.114616 CCCAGTACCTGAGAATGAGCT 58.885 52.381 0.00 0.00 32.44 4.09
1099 1223 1.720781 AATTGAAAGTTGCTGCCCCT 58.279 45.000 0.00 0.00 0.00 4.79
1408 1532 2.585432 AGGGGTTTAACCATATGCACCT 59.415 45.455 16.58 8.13 41.02 4.00
1633 1757 2.810852 GCAACTGCATATCTTAGGAGGC 59.189 50.000 0.00 0.00 41.59 4.70
2201 2325 9.226606 CTTCATGTTTCCACCACTACTAAAATA 57.773 33.333 0.00 0.00 0.00 1.40
2241 2365 9.125026 CATAAAAATGAGAGGTATAAAGGCTGT 57.875 33.333 0.00 0.00 0.00 4.40
2499 2625 3.395639 CAAAGCATCAATTGTGCCTTGT 58.604 40.909 22.61 9.62 43.50 3.16
2510 2636 1.340308 TGTGCCTTGTGAGGATGATGG 60.340 52.381 0.00 0.00 46.74 3.51
2978 3104 1.846007 TGTGTGGCCAACAAGAAAGT 58.154 45.000 7.24 0.00 41.57 2.66
3193 3320 6.518493 CCATATCATGGTTCATTTGGGAAAG 58.482 40.000 0.00 0.00 45.54 2.62
3417 3544 4.146745 TGCATACATGTGAATCTGCTCT 57.853 40.909 9.11 0.00 0.00 4.09
3793 3921 7.218314 AGGGTCAAATATGGAATTCTCTCTT 57.782 36.000 5.23 0.00 0.00 2.85
3794 3922 7.286313 AGGGTCAAATATGGAATTCTCTCTTC 58.714 38.462 5.23 0.00 0.00 2.87
3795 3923 7.056635 GGGTCAAATATGGAATTCTCTCTTCA 58.943 38.462 5.23 0.00 0.00 3.02
3796 3924 7.723172 GGGTCAAATATGGAATTCTCTCTTCAT 59.277 37.037 5.23 1.91 0.00 2.57
3797 3925 8.566260 GGTCAAATATGGAATTCTCTCTTCATG 58.434 37.037 5.23 0.00 0.00 3.07
3798 3926 9.334947 GTCAAATATGGAATTCTCTCTTCATGA 57.665 33.333 5.23 0.00 0.00 3.07
3805 3933 9.863650 ATGGAATTCTCTCTTCATGATTTACAT 57.136 29.630 5.23 0.00 40.17 2.29
3821 3949 8.620116 TGATTTACATGTTGTCAAGAATGAGA 57.380 30.769 2.30 1.45 35.88 3.27
3822 3950 9.234827 TGATTTACATGTTGTCAAGAATGAGAT 57.765 29.630 2.30 5.75 35.88 2.75
3850 3978 9.128404 TCTTAAATCCATCAATCTCTTCATTGG 57.872 33.333 0.00 0.00 34.90 3.16
3851 3979 9.128404 CTTAAATCCATCAATCTCTTCATTGGA 57.872 33.333 0.00 0.00 34.90 3.53
3852 3980 7.584122 AAATCCATCAATCTCTTCATTGGAG 57.416 36.000 0.00 0.00 35.42 3.86
3853 3981 5.705397 TCCATCAATCTCTTCATTGGAGT 57.295 39.130 0.00 0.00 34.90 3.85
3854 3982 6.070951 TCCATCAATCTCTTCATTGGAGTT 57.929 37.500 0.00 0.00 34.90 3.01
3855 3983 7.199167 TCCATCAATCTCTTCATTGGAGTTA 57.801 36.000 0.00 0.00 34.90 2.24
3856 3984 7.809238 TCCATCAATCTCTTCATTGGAGTTAT 58.191 34.615 0.00 0.00 34.90 1.89
3857 3985 7.935755 TCCATCAATCTCTTCATTGGAGTTATC 59.064 37.037 0.00 0.00 34.90 1.75
3858 3986 7.937942 CCATCAATCTCTTCATTGGAGTTATCT 59.062 37.037 0.00 0.00 34.90 1.98
3859 3987 9.339850 CATCAATCTCTTCATTGGAGTTATCTT 57.660 33.333 0.00 0.00 34.90 2.40
3860 3988 8.728337 TCAATCTCTTCATTGGAGTTATCTTG 57.272 34.615 0.00 0.00 34.90 3.02
3861 3989 7.772292 TCAATCTCTTCATTGGAGTTATCTTGG 59.228 37.037 0.00 0.00 34.90 3.61
3862 3990 5.994250 TCTCTTCATTGGAGTTATCTTGGG 58.006 41.667 0.00 0.00 33.06 4.12
3863 3991 5.488919 TCTCTTCATTGGAGTTATCTTGGGT 59.511 40.000 0.00 0.00 33.06 4.51
3864 3992 6.012508 TCTCTTCATTGGAGTTATCTTGGGTT 60.013 38.462 0.00 0.00 33.06 4.11
3865 3993 7.182026 TCTCTTCATTGGAGTTATCTTGGGTTA 59.818 37.037 0.00 0.00 33.06 2.85
3866 3994 7.872138 TCTTCATTGGAGTTATCTTGGGTTAT 58.128 34.615 0.00 0.00 0.00 1.89
3867 3995 7.775093 TCTTCATTGGAGTTATCTTGGGTTATG 59.225 37.037 0.00 0.00 0.00 1.90
3868 3996 6.969043 TCATTGGAGTTATCTTGGGTTATGT 58.031 36.000 0.00 0.00 0.00 2.29
3869 3997 7.410174 TCATTGGAGTTATCTTGGGTTATGTT 58.590 34.615 0.00 0.00 0.00 2.71
3870 3998 7.893302 TCATTGGAGTTATCTTGGGTTATGTTT 59.107 33.333 0.00 0.00 0.00 2.83
3871 3999 7.696992 TTGGAGTTATCTTGGGTTATGTTTC 57.303 36.000 0.00 0.00 0.00 2.78
3872 4000 6.785076 TGGAGTTATCTTGGGTTATGTTTCA 58.215 36.000 0.00 0.00 0.00 2.69
3873 4001 6.657541 TGGAGTTATCTTGGGTTATGTTTCAC 59.342 38.462 0.00 0.00 0.00 3.18
3874 4002 6.095021 GGAGTTATCTTGGGTTATGTTTCACC 59.905 42.308 0.00 0.00 0.00 4.02
3875 4003 6.790319 AGTTATCTTGGGTTATGTTTCACCT 58.210 36.000 0.00 0.00 33.09 4.00
3876 4004 7.924541 AGTTATCTTGGGTTATGTTTCACCTA 58.075 34.615 0.00 0.00 33.09 3.08
3877 4005 8.387813 AGTTATCTTGGGTTATGTTTCACCTAA 58.612 33.333 0.00 0.00 32.94 2.69
3878 4006 9.016438 GTTATCTTGGGTTATGTTTCACCTAAA 57.984 33.333 0.00 0.00 33.51 1.85
3879 4007 9.589461 TTATCTTGGGTTATGTTTCACCTAAAA 57.411 29.630 0.00 0.00 33.51 1.52
3880 4008 7.279750 TCTTGGGTTATGTTTCACCTAAAAC 57.720 36.000 0.00 0.00 39.16 2.43
3881 4009 6.265876 TCTTGGGTTATGTTTCACCTAAAACC 59.734 38.462 0.00 0.00 38.16 3.27
3882 4010 5.707495 TGGGTTATGTTTCACCTAAAACCT 58.293 37.500 0.00 0.00 38.16 3.50
3883 4011 6.137559 TGGGTTATGTTTCACCTAAAACCTT 58.862 36.000 0.00 0.00 38.16 3.50
3884 4012 6.265876 TGGGTTATGTTTCACCTAAAACCTTC 59.734 38.462 0.00 0.00 38.16 3.46
3885 4013 6.294899 GGGTTATGTTTCACCTAAAACCTTCC 60.295 42.308 0.00 0.00 38.16 3.46
3886 4014 6.294899 GGTTATGTTTCACCTAAAACCTTCCC 60.295 42.308 0.00 0.00 38.16 3.97
3887 4015 4.529716 TGTTTCACCTAAAACCTTCCCT 57.470 40.909 0.00 0.00 38.16 4.20
3888 4016 5.649970 TGTTTCACCTAAAACCTTCCCTA 57.350 39.130 0.00 0.00 38.16 3.53
3889 4017 6.015991 TGTTTCACCTAAAACCTTCCCTAA 57.984 37.500 0.00 0.00 38.16 2.69
3890 4018 6.066032 TGTTTCACCTAAAACCTTCCCTAAG 58.934 40.000 0.00 0.00 38.16 2.18
3908 4036 7.004086 TCCCTAAGGAATGTTGCTATTTATGG 58.996 38.462 0.00 0.00 40.08 2.74
3909 4037 6.777580 CCCTAAGGAATGTTGCTATTTATGGT 59.222 38.462 0.00 0.00 33.47 3.55
3910 4038 7.255590 CCCTAAGGAATGTTGCTATTTATGGTG 60.256 40.741 0.00 0.00 33.47 4.17
3911 4039 7.285401 CCTAAGGAATGTTGCTATTTATGGTGT 59.715 37.037 0.00 0.00 0.00 4.16
3912 4040 7.480760 AAGGAATGTTGCTATTTATGGTGTT 57.519 32.000 0.00 0.00 0.00 3.32
3913 4041 8.588290 AAGGAATGTTGCTATTTATGGTGTTA 57.412 30.769 0.00 0.00 0.00 2.41
3914 4042 8.766994 AGGAATGTTGCTATTTATGGTGTTAT 57.233 30.769 0.00 0.00 0.00 1.89
3915 4043 8.850156 AGGAATGTTGCTATTTATGGTGTTATC 58.150 33.333 0.00 0.00 0.00 1.75
3916 4044 7.803189 GGAATGTTGCTATTTATGGTGTTATCG 59.197 37.037 0.00 0.00 0.00 2.92
3917 4045 8.445275 AATGTTGCTATTTATGGTGTTATCGA 57.555 30.769 0.00 0.00 0.00 3.59
3918 4046 8.621532 ATGTTGCTATTTATGGTGTTATCGAT 57.378 30.769 2.16 2.16 0.00 3.59
3919 4047 7.860613 TGTTGCTATTTATGGTGTTATCGATG 58.139 34.615 8.54 0.00 0.00 3.84
3920 4048 7.713073 TGTTGCTATTTATGGTGTTATCGATGA 59.287 33.333 8.54 0.00 0.00 2.92
3921 4049 8.721478 GTTGCTATTTATGGTGTTATCGATGAT 58.279 33.333 8.54 0.00 0.00 2.45
3922 4050 8.479313 TGCTATTTATGGTGTTATCGATGATC 57.521 34.615 8.54 0.00 0.00 2.92
3923 4051 7.549134 TGCTATTTATGGTGTTATCGATGATCC 59.451 37.037 8.54 7.69 0.00 3.36
3924 4052 7.549134 GCTATTTATGGTGTTATCGATGATCCA 59.451 37.037 8.54 12.96 0.00 3.41
3925 4053 9.435688 CTATTTATGGTGTTATCGATGATCCAA 57.564 33.333 8.54 0.00 0.00 3.53
3926 4054 7.728847 TTTATGGTGTTATCGATGATCCAAG 57.271 36.000 8.54 0.00 0.00 3.61
3927 4055 4.753516 TGGTGTTATCGATGATCCAAGT 57.246 40.909 8.54 0.00 0.00 3.16
3928 4056 5.097742 TGGTGTTATCGATGATCCAAGTT 57.902 39.130 8.54 0.00 0.00 2.66
3929 4057 5.496556 TGGTGTTATCGATGATCCAAGTTT 58.503 37.500 8.54 0.00 0.00 2.66
3930 4058 5.584649 TGGTGTTATCGATGATCCAAGTTTC 59.415 40.000 8.54 0.00 0.00 2.78
3931 4059 5.007724 GGTGTTATCGATGATCCAAGTTTCC 59.992 44.000 8.54 0.00 0.00 3.13
3932 4060 5.817816 GTGTTATCGATGATCCAAGTTTCCT 59.182 40.000 8.54 0.00 0.00 3.36
3933 4061 6.018669 GTGTTATCGATGATCCAAGTTTCCTC 60.019 42.308 8.54 0.00 0.00 3.71
3934 4062 3.543680 TCGATGATCCAAGTTTCCTCC 57.456 47.619 0.00 0.00 0.00 4.30
3935 4063 3.107601 TCGATGATCCAAGTTTCCTCCT 58.892 45.455 0.00 0.00 0.00 3.69
3936 4064 4.286707 TCGATGATCCAAGTTTCCTCCTA 58.713 43.478 0.00 0.00 0.00 2.94
3937 4065 4.901849 TCGATGATCCAAGTTTCCTCCTAT 59.098 41.667 0.00 0.00 0.00 2.57
3938 4066 5.366768 TCGATGATCCAAGTTTCCTCCTATT 59.633 40.000 0.00 0.00 0.00 1.73
3939 4067 5.698545 CGATGATCCAAGTTTCCTCCTATTC 59.301 44.000 0.00 0.00 0.00 1.75
3940 4068 6.463614 CGATGATCCAAGTTTCCTCCTATTCT 60.464 42.308 0.00 0.00 0.00 2.40
3941 4069 6.240549 TGATCCAAGTTTCCTCCTATTCTC 57.759 41.667 0.00 0.00 0.00 2.87
3942 4070 4.737855 TCCAAGTTTCCTCCTATTCTCG 57.262 45.455 0.00 0.00 0.00 4.04
3943 4071 3.118738 TCCAAGTTTCCTCCTATTCTCGC 60.119 47.826 0.00 0.00 0.00 5.03
3944 4072 2.860735 CAAGTTTCCTCCTATTCTCGCG 59.139 50.000 0.00 0.00 0.00 5.87
3945 4073 2.376109 AGTTTCCTCCTATTCTCGCGA 58.624 47.619 9.26 9.26 0.00 5.87
3946 4074 2.959707 AGTTTCCTCCTATTCTCGCGAT 59.040 45.455 10.36 0.00 0.00 4.58
3947 4075 3.053455 GTTTCCTCCTATTCTCGCGATG 58.947 50.000 10.36 3.99 0.00 3.84
3948 4076 2.271944 TCCTCCTATTCTCGCGATGA 57.728 50.000 10.36 6.72 0.00 2.92
3949 4077 2.583143 TCCTCCTATTCTCGCGATGAA 58.417 47.619 10.36 15.86 0.00 2.57
3950 4078 2.956333 TCCTCCTATTCTCGCGATGAAA 59.044 45.455 10.36 5.11 0.00 2.69
3951 4079 3.004839 TCCTCCTATTCTCGCGATGAAAG 59.995 47.826 10.36 13.87 0.00 2.62
3952 4080 3.004839 CCTCCTATTCTCGCGATGAAAGA 59.995 47.826 10.36 12.38 0.00 2.52
3953 4081 4.321601 CCTCCTATTCTCGCGATGAAAGAT 60.322 45.833 10.36 3.95 0.00 2.40
3954 4082 4.550422 TCCTATTCTCGCGATGAAAGATG 58.450 43.478 10.36 6.69 0.00 2.90
3955 4083 4.038042 TCCTATTCTCGCGATGAAAGATGT 59.962 41.667 10.36 3.25 0.00 3.06
3956 4084 4.747108 CCTATTCTCGCGATGAAAGATGTT 59.253 41.667 10.36 2.57 0.00 2.71
3957 4085 5.235186 CCTATTCTCGCGATGAAAGATGTTT 59.765 40.000 10.36 1.89 0.00 2.83
3958 4086 5.551760 ATTCTCGCGATGAAAGATGTTTT 57.448 34.783 10.36 0.00 0.00 2.43
3959 4087 4.584029 TCTCGCGATGAAAGATGTTTTC 57.416 40.909 10.36 0.00 0.00 2.29
3960 4088 3.993736 TCTCGCGATGAAAGATGTTTTCA 59.006 39.130 10.36 4.97 41.91 2.69
3972 4100 3.999229 ATGTTTTCATCTCTTCGTCGC 57.001 42.857 0.00 0.00 35.32 5.19
3973 4101 3.026630 TGTTTTCATCTCTTCGTCGCT 57.973 42.857 0.00 0.00 0.00 4.93
3974 4102 2.987149 TGTTTTCATCTCTTCGTCGCTC 59.013 45.455 0.00 0.00 0.00 5.03
3975 4103 3.246619 GTTTTCATCTCTTCGTCGCTCT 58.753 45.455 0.00 0.00 0.00 4.09
3976 4104 2.834574 TTCATCTCTTCGTCGCTCTC 57.165 50.000 0.00 0.00 0.00 3.20
3977 4105 1.739067 TCATCTCTTCGTCGCTCTCA 58.261 50.000 0.00 0.00 0.00 3.27
3978 4106 2.084546 TCATCTCTTCGTCGCTCTCAA 58.915 47.619 0.00 0.00 0.00 3.02
3979 4107 2.096657 TCATCTCTTCGTCGCTCTCAAG 59.903 50.000 0.00 0.00 0.00 3.02
3980 4108 0.169230 TCTCTTCGTCGCTCTCAAGC 59.831 55.000 0.00 0.00 45.56 4.01
3994 4122 5.571778 CTCTCAAGCAAGCAATTGTTTTC 57.428 39.130 4.61 0.37 0.00 2.29
3995 4123 4.043750 TCTCAAGCAAGCAATTGTTTTCG 58.956 39.130 4.61 0.00 0.00 3.46
3996 4124 3.779759 TCAAGCAAGCAATTGTTTTCGT 58.220 36.364 4.61 0.00 0.00 3.85
3997 4125 4.180057 TCAAGCAAGCAATTGTTTTCGTT 58.820 34.783 4.61 0.00 0.00 3.85
3998 4126 4.629200 TCAAGCAAGCAATTGTTTTCGTTT 59.371 33.333 4.61 0.00 0.00 3.60
3999 4127 4.519191 AGCAAGCAATTGTTTTCGTTTG 57.481 36.364 4.61 0.00 0.00 2.93
4000 4128 3.932089 AGCAAGCAATTGTTTTCGTTTGT 59.068 34.783 4.61 0.00 0.00 2.83
4001 4129 4.021169 GCAAGCAATTGTTTTCGTTTGTG 58.979 39.130 4.61 0.00 0.00 3.33
4002 4130 4.576678 CAAGCAATTGTTTTCGTTTGTGG 58.423 39.130 4.61 0.00 0.00 4.17
4003 4131 4.116747 AGCAATTGTTTTCGTTTGTGGA 57.883 36.364 7.40 0.00 0.00 4.02
4004 4132 4.499183 AGCAATTGTTTTCGTTTGTGGAA 58.501 34.783 7.40 0.00 0.00 3.53
4005 4133 4.566360 AGCAATTGTTTTCGTTTGTGGAAG 59.434 37.500 7.40 0.00 0.00 3.46
4006 4134 4.260172 GCAATTGTTTTCGTTTGTGGAAGG 60.260 41.667 7.40 0.00 0.00 3.46
4007 4135 4.729227 ATTGTTTTCGTTTGTGGAAGGT 57.271 36.364 0.00 0.00 0.00 3.50
4008 4136 4.522722 TTGTTTTCGTTTGTGGAAGGTT 57.477 36.364 0.00 0.00 0.00 3.50
4009 4137 4.522722 TGTTTTCGTTTGTGGAAGGTTT 57.477 36.364 0.00 0.00 0.00 3.27
4010 4138 4.884247 TGTTTTCGTTTGTGGAAGGTTTT 58.116 34.783 0.00 0.00 0.00 2.43
4011 4139 4.924462 TGTTTTCGTTTGTGGAAGGTTTTC 59.076 37.500 0.00 0.00 0.00 2.29
4012 4140 4.785511 TTTCGTTTGTGGAAGGTTTTCA 57.214 36.364 0.00 0.00 34.90 2.69
4013 4141 3.768468 TCGTTTGTGGAAGGTTTTCAC 57.232 42.857 0.00 0.00 34.90 3.18
4014 4142 2.424246 TCGTTTGTGGAAGGTTTTCACC 59.576 45.455 0.00 0.00 44.67 4.02
4041 4169 9.748708 TCAAGTTTTTGAGATGTTTTCCATAAG 57.251 29.630 0.00 0.00 38.37 1.73
4042 4170 8.490355 CAAGTTTTTGAGATGTTTTCCATAAGC 58.510 33.333 0.00 0.00 36.36 3.09
4043 4171 7.154656 AGTTTTTGAGATGTTTTCCATAAGCC 58.845 34.615 0.00 0.00 32.56 4.35
4044 4172 5.659440 TTTGAGATGTTTTCCATAAGCCC 57.341 39.130 0.00 0.00 32.56 5.19
4045 4173 4.591321 TGAGATGTTTTCCATAAGCCCT 57.409 40.909 0.00 0.00 32.56 5.19
4046 4174 4.526970 TGAGATGTTTTCCATAAGCCCTC 58.473 43.478 0.00 0.00 32.56 4.30
4047 4175 4.018506 TGAGATGTTTTCCATAAGCCCTCA 60.019 41.667 0.00 0.00 32.56 3.86
4048 4176 4.934356 AGATGTTTTCCATAAGCCCTCAA 58.066 39.130 0.00 0.00 32.56 3.02
4049 4177 4.706962 AGATGTTTTCCATAAGCCCTCAAC 59.293 41.667 0.00 0.00 32.56 3.18
4050 4178 3.838565 TGTTTTCCATAAGCCCTCAACA 58.161 40.909 0.00 0.00 0.00 3.33
4051 4179 4.219115 TGTTTTCCATAAGCCCTCAACAA 58.781 39.130 0.00 0.00 0.00 2.83
4052 4180 4.280677 TGTTTTCCATAAGCCCTCAACAAG 59.719 41.667 0.00 0.00 0.00 3.16
4053 4181 2.128771 TCCATAAGCCCTCAACAAGC 57.871 50.000 0.00 0.00 0.00 4.01
4054 4182 1.354031 TCCATAAGCCCTCAACAAGCA 59.646 47.619 0.00 0.00 0.00 3.91
4055 4183 2.025037 TCCATAAGCCCTCAACAAGCAT 60.025 45.455 0.00 0.00 0.00 3.79
4056 4184 2.100252 CCATAAGCCCTCAACAAGCATG 59.900 50.000 0.00 0.00 0.00 4.06
4057 4185 2.584835 TAAGCCCTCAACAAGCATGT 57.415 45.000 0.00 0.00 43.14 3.21
4059 4187 1.251251 AGCCCTCAACAAGCATGTTC 58.749 50.000 3.95 0.00 46.78 3.18
4060 4188 1.202976 AGCCCTCAACAAGCATGTTCT 60.203 47.619 3.95 0.00 46.78 3.01
4061 4189 1.615392 GCCCTCAACAAGCATGTTCTT 59.385 47.619 3.95 0.00 46.78 2.52
4062 4190 2.036346 GCCCTCAACAAGCATGTTCTTT 59.964 45.455 3.95 0.00 46.78 2.52
4063 4191 3.493176 GCCCTCAACAAGCATGTTCTTTT 60.493 43.478 3.95 0.00 46.78 2.27
4064 4192 4.301628 CCCTCAACAAGCATGTTCTTTTC 58.698 43.478 3.95 0.00 46.78 2.29
4065 4193 4.202141 CCCTCAACAAGCATGTTCTTTTCA 60.202 41.667 3.95 0.00 46.78 2.69
4066 4194 5.510179 CCCTCAACAAGCATGTTCTTTTCAT 60.510 40.000 3.95 0.00 46.78 2.57
4067 4195 5.987347 CCTCAACAAGCATGTTCTTTTCATT 59.013 36.000 3.95 0.00 46.78 2.57
4068 4196 6.073980 CCTCAACAAGCATGTTCTTTTCATTG 60.074 38.462 3.95 0.00 46.78 2.82
4069 4197 6.339730 TCAACAAGCATGTTCTTTTCATTGT 58.660 32.000 3.95 0.00 46.78 2.71
4070 4198 6.817641 TCAACAAGCATGTTCTTTTCATTGTT 59.182 30.769 3.95 0.00 46.78 2.83
4071 4199 6.592798 ACAAGCATGTTCTTTTCATTGTTG 57.407 33.333 0.00 0.00 35.91 3.33
4072 4200 6.339730 ACAAGCATGTTCTTTTCATTGTTGA 58.660 32.000 0.00 0.00 35.91 3.18
4073 4201 6.987992 ACAAGCATGTTCTTTTCATTGTTGAT 59.012 30.769 0.00 0.00 35.91 2.57
4074 4202 7.496591 ACAAGCATGTTCTTTTCATTGTTGATT 59.503 29.630 0.00 0.00 35.91 2.57
4075 4203 8.339714 CAAGCATGTTCTTTTCATTGTTGATTT 58.660 29.630 0.00 0.00 0.00 2.17
4076 4204 8.080083 AGCATGTTCTTTTCATTGTTGATTTC 57.920 30.769 0.00 0.00 0.00 2.17
4077 4205 7.172019 AGCATGTTCTTTTCATTGTTGATTTCC 59.828 33.333 0.00 0.00 0.00 3.13
4078 4206 7.571798 GCATGTTCTTTTCATTGTTGATTTCCC 60.572 37.037 0.00 0.00 0.00 3.97
4079 4207 6.882656 TGTTCTTTTCATTGTTGATTTCCCA 58.117 32.000 0.00 0.00 0.00 4.37
4080 4208 7.334090 TGTTCTTTTCATTGTTGATTTCCCAA 58.666 30.769 0.00 0.00 0.00 4.12
4081 4209 7.279758 TGTTCTTTTCATTGTTGATTTCCCAAC 59.720 33.333 0.00 0.00 44.84 3.77
4082 4210 5.982516 TCTTTTCATTGTTGATTTCCCAACG 59.017 36.000 0.00 0.00 46.89 4.10
4083 4211 5.521906 TTTCATTGTTGATTTCCCAACGA 57.478 34.783 0.00 0.00 46.89 3.85
4084 4212 4.497473 TCATTGTTGATTTCCCAACGAC 57.503 40.909 0.00 0.00 46.89 4.34
4085 4213 4.141287 TCATTGTTGATTTCCCAACGACT 58.859 39.130 0.00 0.00 46.89 4.18
4086 4214 4.215399 TCATTGTTGATTTCCCAACGACTC 59.785 41.667 0.00 0.00 46.89 3.36
4087 4215 2.500229 TGTTGATTTCCCAACGACTCC 58.500 47.619 0.00 0.00 46.89 3.85
4088 4216 1.463444 GTTGATTTCCCAACGACTCCG 59.537 52.381 0.00 0.00 37.31 4.63
4100 4228 2.656560 CGACTCCGTTCAATCCTTCT 57.343 50.000 0.00 0.00 0.00 2.85
4101 4229 2.960819 CGACTCCGTTCAATCCTTCTT 58.039 47.619 0.00 0.00 0.00 2.52
4102 4230 3.326747 CGACTCCGTTCAATCCTTCTTT 58.673 45.455 0.00 0.00 0.00 2.52
4103 4231 3.746492 CGACTCCGTTCAATCCTTCTTTT 59.254 43.478 0.00 0.00 0.00 2.27
4104 4232 4.213482 CGACTCCGTTCAATCCTTCTTTTT 59.787 41.667 0.00 0.00 0.00 1.94
4105 4233 5.407387 CGACTCCGTTCAATCCTTCTTTTTA 59.593 40.000 0.00 0.00 0.00 1.52
4106 4234 6.073440 CGACTCCGTTCAATCCTTCTTTTTAA 60.073 38.462 0.00 0.00 0.00 1.52
4107 4235 7.203255 ACTCCGTTCAATCCTTCTTTTTAAG 57.797 36.000 0.00 0.00 0.00 1.85
4108 4236 6.206829 ACTCCGTTCAATCCTTCTTTTTAAGG 59.793 38.462 0.00 0.00 46.35 2.69
4109 4237 6.066032 TCCGTTCAATCCTTCTTTTTAAGGT 58.934 36.000 2.76 0.00 45.37 3.50
4110 4238 6.548251 TCCGTTCAATCCTTCTTTTTAAGGTT 59.452 34.615 2.76 0.00 45.37 3.50
4111 4239 6.640907 CCGTTCAATCCTTCTTTTTAAGGTTG 59.359 38.462 2.76 6.95 45.37 3.77
4112 4240 6.143919 CGTTCAATCCTTCTTTTTAAGGTTGC 59.856 38.462 2.76 0.00 45.37 4.17
4113 4241 6.976934 TCAATCCTTCTTTTTAAGGTTGCT 57.023 33.333 2.76 0.00 45.37 3.91
4114 4242 6.981722 TCAATCCTTCTTTTTAAGGTTGCTC 58.018 36.000 2.76 0.00 45.37 4.26
4115 4243 6.777580 TCAATCCTTCTTTTTAAGGTTGCTCT 59.222 34.615 2.76 0.00 45.37 4.09
4116 4244 6.825944 ATCCTTCTTTTTAAGGTTGCTCTC 57.174 37.500 2.76 0.00 45.37 3.20
4117 4245 5.941788 TCCTTCTTTTTAAGGTTGCTCTCT 58.058 37.500 2.76 0.00 45.37 3.10
4118 4246 5.998363 TCCTTCTTTTTAAGGTTGCTCTCTC 59.002 40.000 2.76 0.00 45.37 3.20
4119 4247 5.765182 CCTTCTTTTTAAGGTTGCTCTCTCA 59.235 40.000 0.00 0.00 41.06 3.27
4120 4248 6.263168 CCTTCTTTTTAAGGTTGCTCTCTCAA 59.737 38.462 0.00 0.00 41.06 3.02
4121 4249 7.201821 CCTTCTTTTTAAGGTTGCTCTCTCAAA 60.202 37.037 0.00 0.00 41.06 2.69
4122 4250 7.823745 TCTTTTTAAGGTTGCTCTCTCAAAT 57.176 32.000 0.00 0.00 0.00 2.32
4123 4251 8.237811 TCTTTTTAAGGTTGCTCTCTCAAATT 57.762 30.769 0.00 0.00 0.00 1.82
4124 4252 8.352942 TCTTTTTAAGGTTGCTCTCTCAAATTC 58.647 33.333 0.00 0.00 0.00 2.17
4125 4253 7.581213 TTTTAAGGTTGCTCTCTCAAATTCA 57.419 32.000 0.00 0.00 0.00 2.57
4126 4254 7.765695 TTTAAGGTTGCTCTCTCAAATTCAT 57.234 32.000 0.00 0.00 0.00 2.57
4127 4255 7.765695 TTAAGGTTGCTCTCTCAAATTCATT 57.234 32.000 0.00 0.00 0.00 2.57
4128 4256 6.661304 AAGGTTGCTCTCTCAAATTCATTT 57.339 33.333 0.00 0.00 0.00 2.32
4129 4257 6.022163 AGGTTGCTCTCTCAAATTCATTTG 57.978 37.500 5.99 5.99 46.39 2.32
4145 4273 7.765695 ATTCATTTGAGGTAGAACATGTTGT 57.234 32.000 17.58 15.25 0.00 3.32
4146 4274 7.581213 TTCATTTGAGGTAGAACATGTTGTT 57.419 32.000 17.58 6.62 44.37 2.83
4147 4275 7.581213 TCATTTGAGGTAGAACATGTTGTTT 57.419 32.000 17.58 3.97 41.28 2.83
4148 4276 8.006298 TCATTTGAGGTAGAACATGTTGTTTT 57.994 30.769 17.58 0.85 41.28 2.43
4149 4277 8.134895 TCATTTGAGGTAGAACATGTTGTTTTC 58.865 33.333 17.58 10.67 41.28 2.29
4150 4278 7.639113 TTTGAGGTAGAACATGTTGTTTTCT 57.361 32.000 17.58 9.06 41.28 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 9.158233 CCAAGTCCTTATAATTTGTTAAGTCGA 57.842 33.333 0.00 0.00 0.00 4.20
328 356 5.867903 ATTTTCCTCATCAACACCAACAA 57.132 34.783 0.00 0.00 0.00 2.83
618 694 5.399301 CGGTGTCAAACTCAAATTCATGTTC 59.601 40.000 0.00 0.00 0.00 3.18
866 990 0.667184 CCACCGCTTGTTTGCATTCC 60.667 55.000 0.00 0.00 0.00 3.01
1477 1601 3.278574 TGAAGTTGGACACCAAGTGAAG 58.721 45.455 10.96 0.00 45.34 3.02
1633 1757 0.949105 GACCACAACCTAGTGTGCCG 60.949 60.000 7.76 0.00 46.24 5.69
1798 1922 1.549170 TGCTACTTTCCTCCTTCGGTC 59.451 52.381 0.00 0.00 0.00 4.79
1930 2054 4.802051 GCCGCTGCCTCCCAATGA 62.802 66.667 0.00 0.00 0.00 2.57
2201 2325 1.901654 TTTATGCCTACCCGCCGTGT 61.902 55.000 0.00 0.00 0.00 4.49
2222 2346 6.136857 TCACTACAGCCTTTATACCTCTCAT 58.863 40.000 0.00 0.00 0.00 2.90
2241 2365 5.277828 GCCGCTTTTTCTTTTCTTCTCACTA 60.278 40.000 0.00 0.00 0.00 2.74
2499 2625 0.835276 CTGCTGGACCATCATCCTCA 59.165 55.000 0.00 0.00 39.75 3.86
2510 2636 0.813210 GCACATAGAGGCTGCTGGAC 60.813 60.000 0.00 0.00 0.00 4.02
2774 2900 8.479689 CCTTTCCCTTTTTCCTTAGTTGTTTTA 58.520 33.333 0.00 0.00 0.00 1.52
2978 3104 7.035004 GGCATGTAATTTCAAAGCAACAGATA 58.965 34.615 12.53 0.00 0.00 1.98
3795 3923 9.234827 TCTCATTCTTGACAACATGTAAATCAT 57.765 29.630 0.00 0.00 37.22 2.45
3796 3924 8.620116 TCTCATTCTTGACAACATGTAAATCA 57.380 30.769 0.00 0.19 0.00 2.57
3824 3952 9.128404 CCAATGAAGAGATTGATGGATTTAAGA 57.872 33.333 0.00 0.00 35.65 2.10
3825 3953 9.128404 TCCAATGAAGAGATTGATGGATTTAAG 57.872 33.333 0.00 0.00 35.65 1.85
3826 3954 9.128404 CTCCAATGAAGAGATTGATGGATTTAA 57.872 33.333 0.00 0.00 35.65 1.52
3827 3955 8.277197 ACTCCAATGAAGAGATTGATGGATTTA 58.723 33.333 0.00 0.00 35.65 1.40
3828 3956 7.124052 ACTCCAATGAAGAGATTGATGGATTT 58.876 34.615 0.00 0.00 35.65 2.17
3829 3957 6.670617 ACTCCAATGAAGAGATTGATGGATT 58.329 36.000 0.00 0.00 35.65 3.01
3830 3958 6.263412 ACTCCAATGAAGAGATTGATGGAT 57.737 37.500 0.00 0.00 35.65 3.41
3831 3959 5.705397 ACTCCAATGAAGAGATTGATGGA 57.295 39.130 0.00 0.00 35.65 3.41
3832 3960 7.937942 AGATAACTCCAATGAAGAGATTGATGG 59.062 37.037 0.00 0.00 35.65 3.51
3833 3961 8.905660 AGATAACTCCAATGAAGAGATTGATG 57.094 34.615 0.00 0.00 35.65 3.07
3834 3962 9.339850 CAAGATAACTCCAATGAAGAGATTGAT 57.660 33.333 0.00 0.00 35.65 2.57
3835 3963 7.772292 CCAAGATAACTCCAATGAAGAGATTGA 59.228 37.037 0.00 0.00 35.65 2.57
3836 3964 7.013083 CCCAAGATAACTCCAATGAAGAGATTG 59.987 40.741 0.00 0.00 35.27 2.67
3837 3965 7.059156 CCCAAGATAACTCCAATGAAGAGATT 58.941 38.462 0.00 0.00 35.27 2.40
3838 3966 6.159398 ACCCAAGATAACTCCAATGAAGAGAT 59.841 38.462 0.00 0.00 35.27 2.75
3839 3967 5.488919 ACCCAAGATAACTCCAATGAAGAGA 59.511 40.000 0.00 0.00 35.27 3.10
3840 3968 5.749462 ACCCAAGATAACTCCAATGAAGAG 58.251 41.667 0.00 0.00 37.39 2.85
3841 3969 5.779241 ACCCAAGATAACTCCAATGAAGA 57.221 39.130 0.00 0.00 0.00 2.87
3842 3970 7.557719 ACATAACCCAAGATAACTCCAATGAAG 59.442 37.037 0.00 0.00 0.00 3.02
3843 3971 7.410174 ACATAACCCAAGATAACTCCAATGAA 58.590 34.615 0.00 0.00 0.00 2.57
3844 3972 6.969043 ACATAACCCAAGATAACTCCAATGA 58.031 36.000 0.00 0.00 0.00 2.57
3845 3973 7.645058 AACATAACCCAAGATAACTCCAATG 57.355 36.000 0.00 0.00 0.00 2.82
3846 3974 7.893302 TGAAACATAACCCAAGATAACTCCAAT 59.107 33.333 0.00 0.00 0.00 3.16
3847 3975 7.175990 GTGAAACATAACCCAAGATAACTCCAA 59.824 37.037 0.00 0.00 36.32 3.53
3848 3976 6.657541 GTGAAACATAACCCAAGATAACTCCA 59.342 38.462 0.00 0.00 36.32 3.86
3849 3977 6.095021 GGTGAAACATAACCCAAGATAACTCC 59.905 42.308 0.00 0.00 39.98 3.85
3850 3978 6.884836 AGGTGAAACATAACCCAAGATAACTC 59.115 38.462 0.00 0.00 39.98 3.01
3851 3979 6.790319 AGGTGAAACATAACCCAAGATAACT 58.210 36.000 0.00 0.00 39.98 2.24
3852 3980 8.570068 TTAGGTGAAACATAACCCAAGATAAC 57.430 34.615 0.00 0.00 38.28 1.89
3853 3981 9.589461 TTTTAGGTGAAACATAACCCAAGATAA 57.411 29.630 0.00 0.00 43.40 1.75
3854 3982 9.016438 GTTTTAGGTGAAACATAACCCAAGATA 57.984 33.333 0.00 0.00 43.40 1.98
3855 3983 7.039293 GGTTTTAGGTGAAACATAACCCAAGAT 60.039 37.037 0.00 0.00 43.40 2.40
3856 3984 6.265876 GGTTTTAGGTGAAACATAACCCAAGA 59.734 38.462 0.00 0.00 43.40 3.02
3857 3985 6.266786 AGGTTTTAGGTGAAACATAACCCAAG 59.733 38.462 0.00 0.00 43.40 3.61
3858 3986 6.137559 AGGTTTTAGGTGAAACATAACCCAA 58.862 36.000 0.00 0.00 43.40 4.12
3859 3987 5.707495 AGGTTTTAGGTGAAACATAACCCA 58.293 37.500 0.00 0.00 43.40 4.51
3860 3988 6.294899 GGAAGGTTTTAGGTGAAACATAACCC 60.295 42.308 0.00 0.00 43.40 4.11
3861 3989 6.294899 GGGAAGGTTTTAGGTGAAACATAACC 60.295 42.308 0.00 0.00 43.40 2.85
3862 3990 6.492429 AGGGAAGGTTTTAGGTGAAACATAAC 59.508 38.462 3.32 0.00 43.40 1.89
3863 3991 6.616577 AGGGAAGGTTTTAGGTGAAACATAA 58.383 36.000 3.32 0.00 41.85 1.90
3864 3992 6.208840 AGGGAAGGTTTTAGGTGAAACATA 57.791 37.500 3.32 0.00 40.44 2.29
3865 3993 5.074746 AGGGAAGGTTTTAGGTGAAACAT 57.925 39.130 3.32 0.00 40.44 2.71
3866 3994 4.529716 AGGGAAGGTTTTAGGTGAAACA 57.470 40.909 3.32 0.00 40.44 2.83
3867 3995 5.475909 CCTTAGGGAAGGTTTTAGGTGAAAC 59.524 44.000 0.00 0.00 46.46 2.78
3868 3996 5.637127 CCTTAGGGAAGGTTTTAGGTGAAA 58.363 41.667 0.00 0.00 46.46 2.69
3869 3997 5.251182 CCTTAGGGAAGGTTTTAGGTGAA 57.749 43.478 0.00 0.00 46.46 3.18
3870 3998 4.921644 CCTTAGGGAAGGTTTTAGGTGA 57.078 45.455 0.00 0.00 46.46 4.02
3883 4011 7.004086 CCATAAATAGCAACATTCCTTAGGGA 58.996 38.462 0.00 0.00 40.36 4.20
3884 4012 6.777580 ACCATAAATAGCAACATTCCTTAGGG 59.222 38.462 0.00 0.00 0.00 3.53
3885 4013 7.285401 ACACCATAAATAGCAACATTCCTTAGG 59.715 37.037 0.00 0.00 0.00 2.69
3886 4014 8.225603 ACACCATAAATAGCAACATTCCTTAG 57.774 34.615 0.00 0.00 0.00 2.18
3887 4015 8.588290 AACACCATAAATAGCAACATTCCTTA 57.412 30.769 0.00 0.00 0.00 2.69
3888 4016 7.480760 AACACCATAAATAGCAACATTCCTT 57.519 32.000 0.00 0.00 0.00 3.36
3889 4017 8.766994 ATAACACCATAAATAGCAACATTCCT 57.233 30.769 0.00 0.00 0.00 3.36
3890 4018 7.803189 CGATAACACCATAAATAGCAACATTCC 59.197 37.037 0.00 0.00 0.00 3.01
3891 4019 8.556194 TCGATAACACCATAAATAGCAACATTC 58.444 33.333 0.00 0.00 0.00 2.67
3892 4020 8.445275 TCGATAACACCATAAATAGCAACATT 57.555 30.769 0.00 0.00 0.00 2.71
3893 4021 8.506437 CATCGATAACACCATAAATAGCAACAT 58.494 33.333 0.00 0.00 0.00 2.71
3894 4022 7.713073 TCATCGATAACACCATAAATAGCAACA 59.287 33.333 0.00 0.00 0.00 3.33
3895 4023 8.083462 TCATCGATAACACCATAAATAGCAAC 57.917 34.615 0.00 0.00 0.00 4.17
3896 4024 8.846943 ATCATCGATAACACCATAAATAGCAA 57.153 30.769 0.00 0.00 0.00 3.91
3897 4025 7.549134 GGATCATCGATAACACCATAAATAGCA 59.451 37.037 0.00 0.00 0.00 3.49
3898 4026 7.549134 TGGATCATCGATAACACCATAAATAGC 59.451 37.037 0.00 0.00 0.00 2.97
3899 4027 9.435688 TTGGATCATCGATAACACCATAAATAG 57.564 33.333 0.00 0.00 0.00 1.73
3900 4028 9.435688 CTTGGATCATCGATAACACCATAAATA 57.564 33.333 0.00 0.00 0.00 1.40
3901 4029 7.939039 ACTTGGATCATCGATAACACCATAAAT 59.061 33.333 0.00 0.00 0.00 1.40
3902 4030 7.279615 ACTTGGATCATCGATAACACCATAAA 58.720 34.615 0.00 0.00 0.00 1.40
3903 4031 6.826668 ACTTGGATCATCGATAACACCATAA 58.173 36.000 0.00 0.00 0.00 1.90
3904 4032 6.419484 ACTTGGATCATCGATAACACCATA 57.581 37.500 0.00 0.00 0.00 2.74
3905 4033 5.296151 ACTTGGATCATCGATAACACCAT 57.704 39.130 0.00 0.00 0.00 3.55
3906 4034 4.753516 ACTTGGATCATCGATAACACCA 57.246 40.909 0.00 3.18 0.00 4.17
3907 4035 5.007724 GGAAACTTGGATCATCGATAACACC 59.992 44.000 0.00 0.36 0.00 4.16
3908 4036 5.817816 AGGAAACTTGGATCATCGATAACAC 59.182 40.000 0.00 0.00 37.44 3.32
3909 4037 5.989477 AGGAAACTTGGATCATCGATAACA 58.011 37.500 0.00 0.00 37.44 2.41
3910 4038 5.467063 GGAGGAAACTTGGATCATCGATAAC 59.533 44.000 0.00 0.00 44.43 1.89
3911 4039 5.366768 AGGAGGAAACTTGGATCATCGATAA 59.633 40.000 0.00 0.00 44.43 1.75
3912 4040 4.901849 AGGAGGAAACTTGGATCATCGATA 59.098 41.667 0.00 0.00 44.43 2.92
3913 4041 3.713764 AGGAGGAAACTTGGATCATCGAT 59.286 43.478 0.00 0.00 44.43 3.59
3914 4042 3.107601 AGGAGGAAACTTGGATCATCGA 58.892 45.455 0.00 0.00 44.43 3.59
3915 4043 3.550437 AGGAGGAAACTTGGATCATCG 57.450 47.619 0.00 0.00 44.43 3.84
3916 4044 6.836242 AGAATAGGAGGAAACTTGGATCATC 58.164 40.000 0.00 0.00 44.43 2.92
3917 4045 6.463614 CGAGAATAGGAGGAAACTTGGATCAT 60.464 42.308 0.00 0.00 44.43 2.45
3918 4046 5.163405 CGAGAATAGGAGGAAACTTGGATCA 60.163 44.000 0.00 0.00 44.43 2.92
3919 4047 5.293560 CGAGAATAGGAGGAAACTTGGATC 58.706 45.833 0.00 0.00 44.43 3.36
3920 4048 4.443598 GCGAGAATAGGAGGAAACTTGGAT 60.444 45.833 0.00 0.00 44.43 3.41
3921 4049 3.118738 GCGAGAATAGGAGGAAACTTGGA 60.119 47.826 0.00 0.00 44.43 3.53
3922 4050 3.198872 GCGAGAATAGGAGGAAACTTGG 58.801 50.000 0.00 0.00 44.43 3.61
3923 4051 2.860735 CGCGAGAATAGGAGGAAACTTG 59.139 50.000 0.00 0.00 44.43 3.16
3924 4052 2.758979 TCGCGAGAATAGGAGGAAACTT 59.241 45.455 3.71 0.00 38.01 2.66
3925 4053 2.376109 TCGCGAGAATAGGAGGAAACT 58.624 47.619 3.71 0.00 40.51 2.66
3926 4054 2.865343 TCGCGAGAATAGGAGGAAAC 57.135 50.000 3.71 0.00 37.03 2.78
3935 4063 7.011389 ATGAAAACATCTTTCATCGCGAGAATA 59.989 33.333 16.66 9.91 43.40 1.75
3936 4064 6.183360 ATGAAAACATCTTTCATCGCGAGAAT 60.183 34.615 16.66 0.00 43.40 2.40
3937 4065 5.122239 ATGAAAACATCTTTCATCGCGAGAA 59.878 36.000 16.66 15.22 43.40 2.87
3938 4066 4.631377 ATGAAAACATCTTTCATCGCGAGA 59.369 37.500 16.66 9.60 43.40 4.04
3939 4067 4.326413 TGAAAACATCTTTCATCGCGAG 57.674 40.909 16.66 7.11 33.90 5.03
3940 4068 4.944962 ATGAAAACATCTTTCATCGCGA 57.055 36.364 13.09 13.09 43.40 5.87
3946 4074 6.128822 CGACGAAGAGATGAAAACATCTTTCA 60.129 38.462 12.84 2.64 41.57 2.69
3947 4075 6.237073 CGACGAAGAGATGAAAACATCTTTC 58.763 40.000 12.84 14.75 41.57 2.62
3948 4076 5.389935 GCGACGAAGAGATGAAAACATCTTT 60.390 40.000 12.84 5.94 41.57 2.52
3949 4077 4.092091 GCGACGAAGAGATGAAAACATCTT 59.908 41.667 12.84 0.00 41.57 2.40
3950 4078 3.614616 GCGACGAAGAGATGAAAACATCT 59.385 43.478 11.69 11.69 43.93 2.90
3951 4079 3.614616 AGCGACGAAGAGATGAAAACATC 59.385 43.478 0.00 0.00 0.00 3.06
3952 4080 3.589988 AGCGACGAAGAGATGAAAACAT 58.410 40.909 0.00 0.00 0.00 2.71
3953 4081 2.987149 GAGCGACGAAGAGATGAAAACA 59.013 45.455 0.00 0.00 0.00 2.83
3954 4082 3.246619 AGAGCGACGAAGAGATGAAAAC 58.753 45.455 0.00 0.00 0.00 2.43
3955 4083 3.057526 TGAGAGCGACGAAGAGATGAAAA 60.058 43.478 0.00 0.00 0.00 2.29
3956 4084 2.488153 TGAGAGCGACGAAGAGATGAAA 59.512 45.455 0.00 0.00 0.00 2.69
3957 4085 2.084546 TGAGAGCGACGAAGAGATGAA 58.915 47.619 0.00 0.00 0.00 2.57
3958 4086 1.739067 TGAGAGCGACGAAGAGATGA 58.261 50.000 0.00 0.00 0.00 2.92
3959 4087 2.449189 CTTGAGAGCGACGAAGAGATG 58.551 52.381 0.00 0.00 0.00 2.90
3960 4088 1.202245 GCTTGAGAGCGACGAAGAGAT 60.202 52.381 0.00 0.00 39.48 2.75
3961 4089 0.169230 GCTTGAGAGCGACGAAGAGA 59.831 55.000 0.00 0.00 39.48 3.10
3962 4090 2.647784 GCTTGAGAGCGACGAAGAG 58.352 57.895 0.00 0.00 39.48 2.85
3963 4091 4.870305 GCTTGAGAGCGACGAAGA 57.130 55.556 0.00 0.00 39.48 2.87
3972 4100 4.147653 CGAAAACAATTGCTTGCTTGAGAG 59.852 41.667 5.05 0.00 35.69 3.20
3973 4101 4.043750 CGAAAACAATTGCTTGCTTGAGA 58.956 39.130 5.05 0.00 35.69 3.27
3974 4102 3.798337 ACGAAAACAATTGCTTGCTTGAG 59.202 39.130 5.05 0.00 35.69 3.02
3975 4103 3.779759 ACGAAAACAATTGCTTGCTTGA 58.220 36.364 5.05 0.00 35.69 3.02
3976 4104 4.519191 AACGAAAACAATTGCTTGCTTG 57.481 36.364 5.05 0.00 35.69 4.01
3977 4105 4.391523 ACAAACGAAAACAATTGCTTGCTT 59.608 33.333 5.05 0.00 35.69 3.91
3978 4106 3.932089 ACAAACGAAAACAATTGCTTGCT 59.068 34.783 5.05 0.00 35.69 3.91
3979 4107 4.021169 CACAAACGAAAACAATTGCTTGC 58.979 39.130 5.05 0.00 35.69 4.01
3980 4108 4.328440 TCCACAAACGAAAACAATTGCTTG 59.672 37.500 5.05 0.00 38.39 4.01
3981 4109 4.499183 TCCACAAACGAAAACAATTGCTT 58.501 34.783 5.05 0.00 0.00 3.91
3982 4110 4.116747 TCCACAAACGAAAACAATTGCT 57.883 36.364 5.05 0.00 0.00 3.91
3983 4111 4.260172 CCTTCCACAAACGAAAACAATTGC 60.260 41.667 5.05 0.00 0.00 3.56
3984 4112 4.867608 ACCTTCCACAAACGAAAACAATTG 59.132 37.500 3.24 3.24 0.00 2.32
3985 4113 5.079689 ACCTTCCACAAACGAAAACAATT 57.920 34.783 0.00 0.00 0.00 2.32
3986 4114 4.729227 ACCTTCCACAAACGAAAACAAT 57.271 36.364 0.00 0.00 0.00 2.71
3987 4115 4.522722 AACCTTCCACAAACGAAAACAA 57.477 36.364 0.00 0.00 0.00 2.83
3988 4116 4.522722 AAACCTTCCACAAACGAAAACA 57.477 36.364 0.00 0.00 0.00 2.83
3989 4117 4.924462 TGAAAACCTTCCACAAACGAAAAC 59.076 37.500 0.00 0.00 0.00 2.43
3990 4118 4.924462 GTGAAAACCTTCCACAAACGAAAA 59.076 37.500 0.00 0.00 0.00 2.29
3991 4119 4.487019 GTGAAAACCTTCCACAAACGAAA 58.513 39.130 0.00 0.00 0.00 3.46
3992 4120 3.119424 GGTGAAAACCTTCCACAAACGAA 60.119 43.478 0.00 0.00 0.00 3.85
3993 4121 2.424246 GGTGAAAACCTTCCACAAACGA 59.576 45.455 0.00 0.00 0.00 3.85
3994 4122 2.425668 AGGTGAAAACCTTCCACAAACG 59.574 45.455 0.00 0.00 36.56 3.60
3995 4123 3.445805 TGAGGTGAAAACCTTCCACAAAC 59.554 43.478 0.00 0.00 40.86 2.93
3996 4124 3.702792 TGAGGTGAAAACCTTCCACAAA 58.297 40.909 0.00 0.00 40.86 2.83
3997 4125 3.374042 TGAGGTGAAAACCTTCCACAA 57.626 42.857 0.00 0.00 40.86 3.33
3998 4126 3.287222 CTTGAGGTGAAAACCTTCCACA 58.713 45.455 0.00 0.00 40.86 4.17
3999 4127 3.288092 ACTTGAGGTGAAAACCTTCCAC 58.712 45.455 0.00 0.00 40.86 4.02
4000 4128 3.662759 ACTTGAGGTGAAAACCTTCCA 57.337 42.857 0.00 0.00 40.86 3.53
4001 4129 5.339008 AAAACTTGAGGTGAAAACCTTCC 57.661 39.130 0.00 0.00 40.86 3.46
4002 4130 6.394809 TCAAAAACTTGAGGTGAAAACCTTC 58.605 36.000 0.00 0.00 40.86 3.46
4003 4131 6.210584 TCTCAAAAACTTGAGGTGAAAACCTT 59.789 34.615 13.42 0.00 46.31 3.50
4004 4132 5.714806 TCTCAAAAACTTGAGGTGAAAACCT 59.285 36.000 13.42 0.00 46.31 3.50
4005 4133 5.961272 TCTCAAAAACTTGAGGTGAAAACC 58.039 37.500 13.42 0.00 46.31 3.27
4012 4140 6.154363 TGGAAAACATCTCAAAAACTTGAGGT 59.846 34.615 13.42 5.09 46.31 3.85
4013 4141 6.572519 TGGAAAACATCTCAAAAACTTGAGG 58.427 36.000 13.42 3.19 46.31 3.86
4015 4143 9.748708 CTTATGGAAAACATCTCAAAAACTTGA 57.251 29.630 0.00 0.00 41.03 3.02
4016 4144 8.490355 GCTTATGGAAAACATCTCAAAAACTTG 58.510 33.333 0.00 0.00 41.03 3.16
4017 4145 7.657354 GGCTTATGGAAAACATCTCAAAAACTT 59.343 33.333 0.00 0.00 41.03 2.66
4018 4146 7.154656 GGCTTATGGAAAACATCTCAAAAACT 58.845 34.615 0.00 0.00 41.03 2.66
4019 4147 6.368791 GGGCTTATGGAAAACATCTCAAAAAC 59.631 38.462 0.00 0.00 41.03 2.43
4020 4148 6.269769 AGGGCTTATGGAAAACATCTCAAAAA 59.730 34.615 0.00 0.00 41.03 1.94
4021 4149 5.779771 AGGGCTTATGGAAAACATCTCAAAA 59.220 36.000 0.00 0.00 41.03 2.44
4022 4150 5.332743 AGGGCTTATGGAAAACATCTCAAA 58.667 37.500 0.00 0.00 41.03 2.69
4023 4151 4.934356 AGGGCTTATGGAAAACATCTCAA 58.066 39.130 0.00 0.00 41.03 3.02
4024 4152 4.018506 TGAGGGCTTATGGAAAACATCTCA 60.019 41.667 0.00 0.00 41.03 3.27
4025 4153 4.526970 TGAGGGCTTATGGAAAACATCTC 58.473 43.478 0.00 0.00 41.03 2.75
4026 4154 4.591321 TGAGGGCTTATGGAAAACATCT 57.409 40.909 0.00 0.00 41.03 2.90
4027 4155 4.462483 TGTTGAGGGCTTATGGAAAACATC 59.538 41.667 0.00 0.00 41.03 3.06
4028 4156 4.415596 TGTTGAGGGCTTATGGAAAACAT 58.584 39.130 0.00 0.00 43.68 2.71
4029 4157 3.838565 TGTTGAGGGCTTATGGAAAACA 58.161 40.909 0.00 0.00 0.00 2.83
4030 4158 4.809673 CTTGTTGAGGGCTTATGGAAAAC 58.190 43.478 0.00 0.00 0.00 2.43
4031 4159 3.258123 GCTTGTTGAGGGCTTATGGAAAA 59.742 43.478 0.00 0.00 0.00 2.29
4032 4160 2.825532 GCTTGTTGAGGGCTTATGGAAA 59.174 45.455 0.00 0.00 0.00 3.13
4033 4161 2.224992 TGCTTGTTGAGGGCTTATGGAA 60.225 45.455 0.00 0.00 0.00 3.53
4034 4162 1.354031 TGCTTGTTGAGGGCTTATGGA 59.646 47.619 0.00 0.00 0.00 3.41
4035 4163 1.838112 TGCTTGTTGAGGGCTTATGG 58.162 50.000 0.00 0.00 0.00 2.74
4036 4164 2.756760 ACATGCTTGTTGAGGGCTTATG 59.243 45.455 0.00 0.00 29.55 1.90
4037 4165 3.091633 ACATGCTTGTTGAGGGCTTAT 57.908 42.857 0.00 0.00 29.55 1.73
4038 4166 2.584835 ACATGCTTGTTGAGGGCTTA 57.415 45.000 0.00 0.00 29.55 3.09
4039 4167 1.615392 GAACATGCTTGTTGAGGGCTT 59.385 47.619 21.41 0.00 46.01 4.35
4040 4168 1.202976 AGAACATGCTTGTTGAGGGCT 60.203 47.619 21.41 9.71 46.01 5.19
4041 4169 1.251251 AGAACATGCTTGTTGAGGGC 58.749 50.000 21.41 7.68 46.01 5.19
4042 4170 4.202141 TGAAAAGAACATGCTTGTTGAGGG 60.202 41.667 21.41 0.00 46.01 4.30
4043 4171 4.935702 TGAAAAGAACATGCTTGTTGAGG 58.064 39.130 21.41 0.00 46.01 3.86
4044 4172 6.477688 ACAATGAAAAGAACATGCTTGTTGAG 59.522 34.615 21.41 4.57 46.01 3.02
4045 4173 6.339730 ACAATGAAAAGAACATGCTTGTTGA 58.660 32.000 21.41 0.00 46.01 3.18
4046 4174 6.592798 ACAATGAAAAGAACATGCTTGTTG 57.407 33.333 21.41 7.98 46.01 3.33
4047 4175 6.817641 TCAACAATGAAAAGAACATGCTTGTT 59.182 30.769 17.08 17.08 39.69 2.83
4048 4176 6.339730 TCAACAATGAAAAGAACATGCTTGT 58.660 32.000 0.00 0.00 32.47 3.16
4049 4177 6.831727 TCAACAATGAAAAGAACATGCTTG 57.168 33.333 0.00 0.00 30.99 4.01
4050 4178 8.441312 AAATCAACAATGAAAAGAACATGCTT 57.559 26.923 0.00 0.00 39.49 3.91
4051 4179 7.172019 GGAAATCAACAATGAAAAGAACATGCT 59.828 33.333 0.00 0.00 39.49 3.79
4052 4180 7.293018 GGAAATCAACAATGAAAAGAACATGC 58.707 34.615 0.00 0.00 39.49 4.06
4053 4181 7.441760 TGGGAAATCAACAATGAAAAGAACATG 59.558 33.333 0.00 0.00 39.49 3.21
4054 4182 7.507829 TGGGAAATCAACAATGAAAAGAACAT 58.492 30.769 0.00 0.00 39.49 2.71
4055 4183 6.882656 TGGGAAATCAACAATGAAAAGAACA 58.117 32.000 0.00 0.00 39.49 3.18
4056 4184 7.516627 CGTTGGGAAATCAACAATGAAAAGAAC 60.517 37.037 8.19 0.00 45.16 3.01
4057 4185 6.478344 CGTTGGGAAATCAACAATGAAAAGAA 59.522 34.615 8.19 0.00 45.16 2.52
4058 4186 5.982516 CGTTGGGAAATCAACAATGAAAAGA 59.017 36.000 8.19 0.00 45.16 2.52
4059 4187 5.982516 TCGTTGGGAAATCAACAATGAAAAG 59.017 36.000 8.19 0.00 45.16 2.27
4060 4188 5.751028 GTCGTTGGGAAATCAACAATGAAAA 59.249 36.000 11.22 0.00 45.16 2.29
4061 4189 5.068460 AGTCGTTGGGAAATCAACAATGAAA 59.932 36.000 11.22 0.00 45.16 2.69
4062 4190 4.582656 AGTCGTTGGGAAATCAACAATGAA 59.417 37.500 11.22 0.00 45.16 2.57
4063 4191 4.141287 AGTCGTTGGGAAATCAACAATGA 58.859 39.130 8.19 7.48 45.16 2.57
4064 4192 4.475944 GAGTCGTTGGGAAATCAACAATG 58.524 43.478 8.19 0.00 45.16 2.82
4065 4193 3.506067 GGAGTCGTTGGGAAATCAACAAT 59.494 43.478 8.19 0.00 45.16 2.71
4066 4194 2.882137 GGAGTCGTTGGGAAATCAACAA 59.118 45.455 8.19 0.00 45.16 2.83
4067 4195 2.500229 GGAGTCGTTGGGAAATCAACA 58.500 47.619 8.19 0.00 45.16 3.33
4068 4196 1.463444 CGGAGTCGTTGGGAAATCAAC 59.537 52.381 0.00 0.00 42.43 3.18
4069 4197 1.803334 CGGAGTCGTTGGGAAATCAA 58.197 50.000 0.00 0.00 0.00 2.57
4070 4198 3.525619 CGGAGTCGTTGGGAAATCA 57.474 52.632 0.00 0.00 0.00 2.57
4081 4209 2.656560 AGAAGGATTGAACGGAGTCG 57.343 50.000 0.00 0.00 45.00 4.18
4082 4210 5.690997 AAAAAGAAGGATTGAACGGAGTC 57.309 39.130 0.00 0.00 45.00 3.36
4096 4224 6.867662 TGAGAGAGCAACCTTAAAAAGAAG 57.132 37.500 0.00 0.00 0.00 2.85
4097 4225 7.639113 TTTGAGAGAGCAACCTTAAAAAGAA 57.361 32.000 0.00 0.00 0.00 2.52
4098 4226 7.823745 ATTTGAGAGAGCAACCTTAAAAAGA 57.176 32.000 0.00 0.00 0.00 2.52
4099 4227 8.137437 TGAATTTGAGAGAGCAACCTTAAAAAG 58.863 33.333 0.00 0.00 0.00 2.27
4100 4228 8.006298 TGAATTTGAGAGAGCAACCTTAAAAA 57.994 30.769 0.00 0.00 0.00 1.94
4101 4229 7.581213 TGAATTTGAGAGAGCAACCTTAAAA 57.419 32.000 0.00 0.00 0.00 1.52
4102 4230 7.765695 ATGAATTTGAGAGAGCAACCTTAAA 57.234 32.000 0.00 0.00 0.00 1.52
4103 4231 7.765695 AATGAATTTGAGAGAGCAACCTTAA 57.234 32.000 0.00 0.00 0.00 1.85
4104 4232 7.765695 AAATGAATTTGAGAGAGCAACCTTA 57.234 32.000 0.00 0.00 0.00 2.69
4105 4233 6.661304 AAATGAATTTGAGAGAGCAACCTT 57.339 33.333 0.00 0.00 0.00 3.50
4118 4246 8.918658 CAACATGTTCTACCTCAAATGAATTTG 58.081 33.333 8.48 9.09 46.39 2.32
4119 4247 8.641541 ACAACATGTTCTACCTCAAATGAATTT 58.358 29.630 8.48 0.00 0.00 1.82
4120 4248 8.181904 ACAACATGTTCTACCTCAAATGAATT 57.818 30.769 8.48 0.00 0.00 2.17
4121 4249 7.765695 ACAACATGTTCTACCTCAAATGAAT 57.234 32.000 8.48 0.00 0.00 2.57
4122 4250 7.581213 AACAACATGTTCTACCTCAAATGAA 57.419 32.000 8.48 0.00 35.27 2.57
4123 4251 7.581213 AAACAACATGTTCTACCTCAAATGA 57.419 32.000 8.48 0.00 40.14 2.57
4124 4252 8.137437 AGAAAACAACATGTTCTACCTCAAATG 58.863 33.333 8.48 0.00 40.14 2.32
4125 4253 8.237811 AGAAAACAACATGTTCTACCTCAAAT 57.762 30.769 8.48 0.00 40.14 2.32
4126 4254 7.639113 AGAAAACAACATGTTCTACCTCAAA 57.361 32.000 8.48 0.00 40.14 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.