Multiple sequence alignment - TraesCS4A01G118900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G118900 chr4A 100.000 4630 0 0 1 4630 146729648 146725019 0.000000e+00 8551.0
1 TraesCS4A01G118900 chr4D 92.954 2938 144 34 779 3680 324893262 324896172 0.000000e+00 4220.0
2 TraesCS4A01G118900 chr4D 89.267 587 17 18 3692 4273 324896410 324896955 0.000000e+00 693.0
3 TraesCS4A01G118900 chr4D 100.000 29 0 0 747 775 324893203 324893231 2.000000e-03 54.7
4 TraesCS4A01G118900 chr4B 92.534 2920 166 36 779 3668 405052579 405055476 0.000000e+00 4137.0
5 TraesCS4A01G118900 chr4B 90.783 575 19 15 3721 4285 405055952 405056502 0.000000e+00 737.0
6 TraesCS4A01G118900 chr4B 87.147 319 25 10 237 544 405052207 405052520 9.530000e-92 348.0
7 TraesCS4A01G118900 chr4B 83.117 77 3 4 3652 3718 405055489 405055565 1.390000e-05 62.1
8 TraesCS4A01G118900 chr4B 100.000 28 0 0 747 774 405052512 405052539 8.000000e-03 52.8
9 TraesCS4A01G118900 chr2D 79.594 1034 191 18 2136 3156 44898390 44897364 0.000000e+00 723.0
10 TraesCS4A01G118900 chr2B 79.594 1034 191 17 2136 3156 71738250 71737224 0.000000e+00 723.0
11 TraesCS4A01G118900 chr2A 79.519 1040 193 18 2131 3156 48659366 48660399 0.000000e+00 723.0
12 TraesCS4A01G118900 chr2A 96.512 172 6 0 575 746 16584350 16584179 7.580000e-73 285.0
13 TraesCS4A01G118900 chr2A 96.512 172 6 0 575 746 16584589 16584418 7.580000e-73 285.0
14 TraesCS4A01G118900 chr2A 95.930 172 7 0 575 746 16584828 16584657 3.530000e-71 279.0
15 TraesCS4A01G118900 chr1B 86.087 345 38 6 4293 4629 632176155 632175813 3.410000e-96 363.0
16 TraesCS4A01G118900 chr5B 87.421 318 32 6 4291 4600 425662875 425662558 4.400000e-95 359.0
17 TraesCS4A01G118900 chr5B 85.303 347 38 7 4293 4629 703265604 703265947 3.430000e-91 346.0
18 TraesCS4A01G118900 chr5B 86.335 322 33 5 4287 4600 447006462 447006780 1.600000e-89 340.0
19 TraesCS4A01G118900 chr6B 87.147 319 30 4 4291 4601 134105480 134105165 7.370000e-93 351.0
20 TraesCS4A01G118900 chr6B 87.025 316 30 4 4293 4600 560193678 560193990 3.430000e-91 346.0
21 TraesCS4A01G118900 chr6B 86.709 316 31 4 4293 4600 607010583 607010895 1.600000e-89 340.0
22 TraesCS4A01G118900 chr7B 86.709 316 34 3 4293 4600 166985776 166985461 1.230000e-90 344.0
23 TraesCS4A01G118900 chr3B 86.076 316 36 3 4293 4600 532668283 532668598 2.670000e-87 333.0
24 TraesCS4A01G118900 chr1A 90.385 104 6 3 663 766 57956715 57956616 2.910000e-27 134.0
25 TraesCS4A01G118900 chr1A 97.183 71 2 0 566 636 57956781 57956711 2.260000e-23 121.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G118900 chr4A 146725019 146729648 4629 True 8551.00 8551 100.000000 1 4630 1 chr4A.!!$R1 4629
1 TraesCS4A01G118900 chr4D 324893203 324896955 3752 False 1655.90 4220 94.073667 747 4273 3 chr4D.!!$F1 3526
2 TraesCS4A01G118900 chr4B 405052207 405056502 4295 False 1067.38 4137 90.716200 237 4285 5 chr4B.!!$F1 4048
3 TraesCS4A01G118900 chr2D 44897364 44898390 1026 True 723.00 723 79.594000 2136 3156 1 chr2D.!!$R1 1020
4 TraesCS4A01G118900 chr2B 71737224 71738250 1026 True 723.00 723 79.594000 2136 3156 1 chr2B.!!$R1 1020
5 TraesCS4A01G118900 chr2A 48659366 48660399 1033 False 723.00 723 79.519000 2131 3156 1 chr2A.!!$F1 1025
6 TraesCS4A01G118900 chr2A 16584179 16584828 649 True 283.00 285 96.318000 575 746 3 chr2A.!!$R1 171

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
872 938 0.032217 TGCCCATCCCCCATTTTCTC 60.032 55.0 0.00 0.00 0.00 2.87 F
1650 1745 0.036010 AATCCAACCTCGTCTGGCAG 60.036 55.0 8.58 8.58 32.33 4.85 F
3459 3560 1.154205 CGATCTGATGCCGTTGGGAC 61.154 60.0 0.00 0.00 34.06 4.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1935 2030 0.898789 TGGAGGAGGACAAGGACGAC 60.899 60.0 0.0 0.0 0.0 4.34 R
3471 3572 0.322187 TTTTCCCGCCAGCTTCCTAC 60.322 55.0 0.0 0.0 0.0 3.18 R
4302 5057 0.032403 CCGTTTGAGGTCGTGGTGTA 59.968 55.0 0.0 0.0 0.0 2.90 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 1.369692 TGAGTTGGCGTGGTACTGG 59.630 57.895 0.00 0.00 0.00 4.00
19 20 1.375523 GAGTTGGCGTGGTACTGGG 60.376 63.158 0.00 0.00 0.00 4.45
20 21 2.108278 GAGTTGGCGTGGTACTGGGT 62.108 60.000 0.00 0.00 0.00 4.51
21 22 0.832983 AGTTGGCGTGGTACTGGGTA 60.833 55.000 0.00 0.00 0.00 3.69
22 23 0.251073 GTTGGCGTGGTACTGGGTAT 59.749 55.000 0.00 0.00 0.00 2.73
23 24 0.985760 TTGGCGTGGTACTGGGTATT 59.014 50.000 0.00 0.00 0.00 1.89
24 25 0.985760 TGGCGTGGTACTGGGTATTT 59.014 50.000 0.00 0.00 0.00 1.40
26 27 2.224818 TGGCGTGGTACTGGGTATTTTT 60.225 45.455 0.00 0.00 0.00 1.94
27 28 2.162809 GGCGTGGTACTGGGTATTTTTG 59.837 50.000 0.00 0.00 0.00 2.44
28 29 2.414957 GCGTGGTACTGGGTATTTTTGC 60.415 50.000 0.00 0.00 0.00 3.68
29 30 3.078837 CGTGGTACTGGGTATTTTTGCT 58.921 45.455 0.00 0.00 0.00 3.91
30 31 3.126343 CGTGGTACTGGGTATTTTTGCTC 59.874 47.826 0.00 0.00 0.00 4.26
31 32 3.442625 GTGGTACTGGGTATTTTTGCTCC 59.557 47.826 0.00 0.00 0.00 4.70
32 33 2.681344 GGTACTGGGTATTTTTGCTCCG 59.319 50.000 0.00 0.00 0.00 4.63
33 34 2.579410 ACTGGGTATTTTTGCTCCGT 57.421 45.000 0.00 0.00 0.00 4.69
34 35 3.706600 ACTGGGTATTTTTGCTCCGTA 57.293 42.857 0.00 0.00 0.00 4.02
35 36 4.230745 ACTGGGTATTTTTGCTCCGTAT 57.769 40.909 0.00 0.00 0.00 3.06
36 37 4.595986 ACTGGGTATTTTTGCTCCGTATT 58.404 39.130 0.00 0.00 0.00 1.89
37 38 5.014202 ACTGGGTATTTTTGCTCCGTATTT 58.986 37.500 0.00 0.00 0.00 1.40
38 39 6.181908 ACTGGGTATTTTTGCTCCGTATTTA 58.818 36.000 0.00 0.00 0.00 1.40
41 42 8.068892 TGGGTATTTTTGCTCCGTATTTAATT 57.931 30.769 0.00 0.00 0.00 1.40
50 51 6.597562 TGCTCCGTATTTAATTTACCTCCAT 58.402 36.000 0.00 0.00 0.00 3.41
51 52 7.737869 TGCTCCGTATTTAATTTACCTCCATA 58.262 34.615 0.00 0.00 0.00 2.74
53 54 9.880157 GCTCCGTATTTAATTTACCTCCATATA 57.120 33.333 0.00 0.00 0.00 0.86
90 91 9.753674 AGGTTCCTTCATATATTTTGAGTCAAA 57.246 29.630 14.35 14.35 0.00 2.69
97 98 9.638239 TTCATATATTTTGAGTCAAAGTTTGGC 57.362 29.630 17.50 12.37 34.72 4.52
110 111 9.740710 AGTCAAAGTTTGGCTATCTATTTAACT 57.259 29.630 20.94 6.45 45.27 2.24
172 173 7.979444 AATTTGTATTCGAAAGAGGTTCTGA 57.021 32.000 0.00 0.00 43.69 3.27
174 175 7.979444 TTTGTATTCGAAAGAGGTTCTGAAT 57.021 32.000 0.00 9.43 43.69 2.57
175 176 6.968131 TGTATTCGAAAGAGGTTCTGAATG 57.032 37.500 0.00 0.00 43.69 2.67
176 177 6.697395 TGTATTCGAAAGAGGTTCTGAATGA 58.303 36.000 0.00 0.00 43.69 2.57
177 178 7.331026 TGTATTCGAAAGAGGTTCTGAATGAT 58.669 34.615 0.00 0.00 43.69 2.45
179 180 9.482627 GTATTCGAAAGAGGTTCTGAATGATAT 57.517 33.333 0.00 0.00 43.69 1.63
208 209 7.797038 ATACTTTAGCCTACAATAAAACCCG 57.203 36.000 0.00 0.00 0.00 5.28
209 210 5.807909 ACTTTAGCCTACAATAAAACCCGA 58.192 37.500 0.00 0.00 0.00 5.14
210 211 6.240145 ACTTTAGCCTACAATAAAACCCGAA 58.760 36.000 0.00 0.00 0.00 4.30
211 212 6.716173 ACTTTAGCCTACAATAAAACCCGAAA 59.284 34.615 0.00 0.00 0.00 3.46
212 213 6.746745 TTAGCCTACAATAAAACCCGAAAG 57.253 37.500 0.00 0.00 0.00 2.62
228 229 4.152607 CGAAAGGAGGAAGAAAAGCAAG 57.847 45.455 0.00 0.00 0.00 4.01
229 230 3.057946 CGAAAGGAGGAAGAAAAGCAAGG 60.058 47.826 0.00 0.00 0.00 3.61
230 231 1.916506 AGGAGGAAGAAAAGCAAGGC 58.083 50.000 0.00 0.00 0.00 4.35
231 232 1.145738 AGGAGGAAGAAAAGCAAGGCA 59.854 47.619 0.00 0.00 0.00 4.75
232 233 1.543358 GGAGGAAGAAAAGCAAGGCAG 59.457 52.381 0.00 0.00 0.00 4.85
233 234 2.508526 GAGGAAGAAAAGCAAGGCAGA 58.491 47.619 0.00 0.00 0.00 4.26
234 235 2.887152 GAGGAAGAAAAGCAAGGCAGAA 59.113 45.455 0.00 0.00 0.00 3.02
240 241 6.875726 GGAAGAAAAGCAAGGCAGAAAATAAT 59.124 34.615 0.00 0.00 0.00 1.28
248 249 3.164268 AGGCAGAAAATAATGGTGCACA 58.836 40.909 20.43 5.24 35.78 4.57
260 261 3.162202 TGGTGCACAACATGAACTTTG 57.838 42.857 20.43 0.00 36.99 2.77
263 264 3.551485 GGTGCACAACATGAACTTTGTTC 59.449 43.478 20.43 3.74 36.99 3.18
266 267 5.291614 GTGCACAACATGAACTTTGTTCAAT 59.708 36.000 13.17 6.11 35.18 2.57
267 268 5.519566 TGCACAACATGAACTTTGTTCAATC 59.480 36.000 15.61 3.41 35.18 2.67
273 274 7.431960 CAACATGAACTTTGTTCAATCGAAAGA 59.568 33.333 15.61 0.00 38.86 2.52
291 292 3.831715 AGAGTGTGCGGCTTTAAAATC 57.168 42.857 0.00 0.00 0.00 2.17
296 300 4.393680 AGTGTGCGGCTTTAAAATCGATAA 59.606 37.500 0.00 0.00 0.00 1.75
298 302 6.259167 AGTGTGCGGCTTTAAAATCGATAATA 59.741 34.615 0.00 0.00 0.00 0.98
325 329 7.914465 AGCTTAAAATGAGCGAGAGAATAAAG 58.086 34.615 0.00 0.00 44.71 1.85
331 335 5.598416 TGAGCGAGAGAATAAAGGAATCA 57.402 39.130 0.00 0.00 0.00 2.57
333 337 6.586344 TGAGCGAGAGAATAAAGGAATCATT 58.414 36.000 0.00 0.00 0.00 2.57
335 339 6.586344 AGCGAGAGAATAAAGGAATCATTCA 58.414 36.000 0.00 0.00 32.27 2.57
341 345 9.759473 AGAGAATAAAGGAATCATTCAAAGGAA 57.241 29.630 0.00 0.00 37.45 3.36
405 413 1.643811 AGCAAGGAGAGGAGGAGTAGT 59.356 52.381 0.00 0.00 0.00 2.73
427 439 3.149981 GGGGCAGCAAATACTATTCTCC 58.850 50.000 0.00 0.00 0.00 3.71
432 444 4.444876 GCAGCAAATACTATTCTCCCTCCA 60.445 45.833 0.00 0.00 0.00 3.86
456 468 4.647424 CTTTTAAAAGCTCACCACACCA 57.353 40.909 14.72 0.00 0.00 4.17
457 469 4.359706 CTTTTAAAAGCTCACCACACCAC 58.640 43.478 14.72 0.00 0.00 4.16
458 470 2.719531 TAAAAGCTCACCACACCACA 57.280 45.000 0.00 0.00 0.00 4.17
459 471 2.071778 AAAAGCTCACCACACCACAT 57.928 45.000 0.00 0.00 0.00 3.21
477 489 1.664321 ATCACACCCTACGCGAGACC 61.664 60.000 15.93 0.00 0.00 3.85
479 491 1.605738 ACACCCTACGCGAGACCTT 60.606 57.895 15.93 0.00 0.00 3.50
535 547 1.203364 AGTGAGGAAGGGGAGATGTGT 60.203 52.381 0.00 0.00 0.00 3.72
536 548 1.630878 GTGAGGAAGGGGAGATGTGTT 59.369 52.381 0.00 0.00 0.00 3.32
537 549 1.630369 TGAGGAAGGGGAGATGTGTTG 59.370 52.381 0.00 0.00 0.00 3.33
538 550 0.995024 AGGAAGGGGAGATGTGTTGG 59.005 55.000 0.00 0.00 0.00 3.77
539 551 0.991920 GGAAGGGGAGATGTGTTGGA 59.008 55.000 0.00 0.00 0.00 3.53
540 552 1.566231 GGAAGGGGAGATGTGTTGGAT 59.434 52.381 0.00 0.00 0.00 3.41
541 553 2.777692 GGAAGGGGAGATGTGTTGGATA 59.222 50.000 0.00 0.00 0.00 2.59
542 554 3.181450 GGAAGGGGAGATGTGTTGGATAG 60.181 52.174 0.00 0.00 0.00 2.08
543 555 2.412591 AGGGGAGATGTGTTGGATAGG 58.587 52.381 0.00 0.00 0.00 2.57
544 556 1.421646 GGGGAGATGTGTTGGATAGGG 59.578 57.143 0.00 0.00 0.00 3.53
545 557 1.202818 GGGAGATGTGTTGGATAGGGC 60.203 57.143 0.00 0.00 0.00 5.19
546 558 1.771255 GGAGATGTGTTGGATAGGGCT 59.229 52.381 0.00 0.00 0.00 5.19
547 559 2.972713 GGAGATGTGTTGGATAGGGCTA 59.027 50.000 0.00 0.00 0.00 3.93
548 560 3.391296 GGAGATGTGTTGGATAGGGCTAA 59.609 47.826 0.00 0.00 0.00 3.09
549 561 4.042187 GGAGATGTGTTGGATAGGGCTAAT 59.958 45.833 0.00 0.00 0.00 1.73
550 562 4.978099 AGATGTGTTGGATAGGGCTAATG 58.022 43.478 0.00 0.00 0.00 1.90
551 563 2.930950 TGTGTTGGATAGGGCTAATGC 58.069 47.619 0.00 0.00 38.76 3.56
563 575 1.014352 GCTAATGCCACACTTACGGG 58.986 55.000 0.00 0.00 0.00 5.28
568 580 3.471354 GCCACACTTACGGGCTAAT 57.529 52.632 0.00 0.00 44.32 1.73
569 581 1.014352 GCCACACTTACGGGCTAATG 58.986 55.000 0.00 0.00 44.32 1.90
570 582 1.014352 CCACACTTACGGGCTAATGC 58.986 55.000 0.00 0.00 38.76 3.56
601 613 1.069204 GGCTAGATGCTCACGGAATCA 59.931 52.381 0.00 0.00 42.39 2.57
617 629 3.306364 GGAATCATCTACGGGAGGATGTG 60.306 52.174 8.18 0.00 43.54 3.21
742 754 3.830744 TGCCCGTAAGTGTAGCATTAT 57.169 42.857 0.00 0.00 0.00 1.28
775 787 1.419012 CATCTTGGCCAGCTAGGATGA 59.581 52.381 19.14 7.26 41.26 2.92
777 789 0.108207 CTTGGCCAGCTAGGATGAGG 59.892 60.000 5.11 0.00 41.22 3.86
797 844 1.462670 GCTCTCTCAAACGGAAAGCAG 59.537 52.381 0.00 0.00 0.00 4.24
864 930 1.690283 ATTTGCTTGCCCATCCCCC 60.690 57.895 0.00 0.00 0.00 5.40
865 931 2.474133 ATTTGCTTGCCCATCCCCCA 62.474 55.000 0.00 0.00 0.00 4.96
869 935 1.273986 GCTTGCCCATCCCCCATTTT 61.274 55.000 0.00 0.00 0.00 1.82
870 936 0.832626 CTTGCCCATCCCCCATTTTC 59.167 55.000 0.00 0.00 0.00 2.29
871 937 0.417035 TTGCCCATCCCCCATTTTCT 59.583 50.000 0.00 0.00 0.00 2.52
872 938 0.032217 TGCCCATCCCCCATTTTCTC 60.032 55.000 0.00 0.00 0.00 2.87
873 939 0.760567 GCCCATCCCCCATTTTCTCC 60.761 60.000 0.00 0.00 0.00 3.71
874 940 0.936691 CCCATCCCCCATTTTCTCCT 59.063 55.000 0.00 0.00 0.00 3.69
875 941 1.291939 CCCATCCCCCATTTTCTCCTT 59.708 52.381 0.00 0.00 0.00 3.36
878 944 3.310141 CCATCCCCCATTTTCTCCTTCTT 60.310 47.826 0.00 0.00 0.00 2.52
882 948 2.624293 CCCCATTTTCTCCTTCTTCCCC 60.624 54.545 0.00 0.00 0.00 4.81
920 986 8.714179 CCGAGATAACATTATAAAATACCGCAA 58.286 33.333 0.00 0.00 0.00 4.85
921 987 9.525007 CGAGATAACATTATAAAATACCGCAAC 57.475 33.333 0.00 0.00 0.00 4.17
927 993 9.777575 AACATTATAAAATACCGCAACTACAAC 57.222 29.630 0.00 0.00 0.00 3.32
929 995 9.646336 CATTATAAAATACCGCAACTACAACTC 57.354 33.333 0.00 0.00 0.00 3.01
930 996 6.673154 ATAAAATACCGCAACTACAACTCC 57.327 37.500 0.00 0.00 0.00 3.85
931 997 3.688694 AATACCGCAACTACAACTCCA 57.311 42.857 0.00 0.00 0.00 3.86
939 1005 2.256117 ACTACAACTCCACACAAGGC 57.744 50.000 0.00 0.00 0.00 4.35
992 1060 0.535102 CTCCTCTCTCCTCTCGCCTC 60.535 65.000 0.00 0.00 0.00 4.70
1009 1077 1.075226 TCCTCGCCTAGCCATTCCT 60.075 57.895 0.00 0.00 0.00 3.36
1010 1078 1.115930 TCCTCGCCTAGCCATTCCTC 61.116 60.000 0.00 0.00 0.00 3.71
1014 1082 1.402896 CGCCTAGCCATTCCTCTCCA 61.403 60.000 0.00 0.00 0.00 3.86
1015 1083 1.063183 GCCTAGCCATTCCTCTCCAT 58.937 55.000 0.00 0.00 0.00 3.41
1028 1107 1.680735 CTCTCCATCTCTCTTCCGGTG 59.319 57.143 0.00 0.00 0.00 4.94
1029 1108 1.006043 TCTCCATCTCTCTTCCGGTGT 59.994 52.381 0.00 0.00 0.00 4.16
1035 1114 2.232298 CTCTCTTCCGGTGTCCAGCC 62.232 65.000 0.00 0.00 0.00 4.85
1045 1124 3.311110 GTCCAGCCTCCCGTGTCA 61.311 66.667 0.00 0.00 0.00 3.58
1047 1126 2.187946 CCAGCCTCCCGTGTCATC 59.812 66.667 0.00 0.00 0.00 2.92
1049 1128 4.148825 AGCCTCCCGTGTCATCGC 62.149 66.667 0.00 0.00 0.00 4.58
1126 1209 1.518302 GGTCTCCTCGCCTTCTTCC 59.482 63.158 0.00 0.00 0.00 3.46
1184 1267 3.507009 AGGTCCGTACGAGCTCGC 61.507 66.667 34.83 19.07 46.54 5.03
1216 1304 2.959071 GCTCACGGCTGCGATCTC 60.959 66.667 0.00 0.00 38.06 2.75
1229 1317 1.202245 GCGATCTCAGATATCTCCGCC 60.202 57.143 1.03 0.00 36.00 6.13
1240 1328 0.181350 ATCTCCGCCCCACATTCTTC 59.819 55.000 0.00 0.00 0.00 2.87
1246 1334 2.162681 CGCCCCACATTCTTCTCTTTT 58.837 47.619 0.00 0.00 0.00 2.27
1251 1339 5.565637 GCCCCACATTCTTCTCTTTTCTTTC 60.566 44.000 0.00 0.00 0.00 2.62
1267 1355 3.815809 TCTTTCGTTGGGTGTTCTTCAT 58.184 40.909 0.00 0.00 0.00 2.57
1272 1360 3.905249 GGGTGTTCTTCATCCGGC 58.095 61.111 0.00 0.00 37.60 6.13
1307 1395 2.159198 GCCAATGGCCAATCTGTACAAG 60.159 50.000 14.47 0.00 44.06 3.16
1361 1450 2.102252 TGCCAACAACATTTGGTCCTTC 59.898 45.455 3.92 0.00 46.89 3.46
1400 1489 2.189784 TGGTCGTGCCGTCCAAAA 59.810 55.556 10.13 0.00 41.39 2.44
1419 1508 2.134789 ATCCAAATCACAGGACAGCC 57.865 50.000 0.00 0.00 36.60 4.85
1424 1513 2.746362 CAAATCACAGGACAGCCTCTTC 59.254 50.000 0.00 0.00 44.80 2.87
1433 1522 2.891882 AGCCTCTTCGAGCTGAGC 59.108 61.111 0.00 0.00 38.11 4.26
1435 1524 1.079543 GCCTCTTCGAGCTGAGCAA 60.080 57.895 7.39 0.00 0.00 3.91
1436 1525 1.083242 GCCTCTTCGAGCTGAGCAAG 61.083 60.000 7.39 1.47 0.00 4.01
1438 1527 1.067283 CCTCTTCGAGCTGAGCAAGAA 60.067 52.381 7.39 10.66 0.00 2.52
1439 1528 2.261345 CTCTTCGAGCTGAGCAAGAAG 58.739 52.381 25.48 25.48 41.72 2.85
1441 1530 2.820197 TCTTCGAGCTGAGCAAGAAGTA 59.180 45.455 28.00 18.18 41.40 2.24
1479 1571 0.668535 GGCGTGCCTTTTCTTCTTGT 59.331 50.000 2.98 0.00 0.00 3.16
1482 1574 2.789339 GCGTGCCTTTTCTTCTTGTTTC 59.211 45.455 0.00 0.00 0.00 2.78
1487 1579 6.090763 CGTGCCTTTTCTTCTTGTTTCTTTTT 59.909 34.615 0.00 0.00 0.00 1.94
1488 1580 7.456253 GTGCCTTTTCTTCTTGTTTCTTTTTC 58.544 34.615 0.00 0.00 0.00 2.29
1489 1581 7.331934 GTGCCTTTTCTTCTTGTTTCTTTTTCT 59.668 33.333 0.00 0.00 0.00 2.52
1501 1593 6.288294 TGTTTCTTTTTCTCTCCAAGATCGA 58.712 36.000 0.00 0.00 32.82 3.59
1503 1595 5.468540 TCTTTTTCTCTCCAAGATCGACA 57.531 39.130 0.00 0.00 32.82 4.35
1514 1606 3.247886 CCAAGATCGACATGCTTGATCTG 59.752 47.826 19.65 14.78 46.09 2.90
1601 1694 3.609853 TCATTCATTTTCCCTGTCTCGG 58.390 45.455 0.00 0.00 0.00 4.63
1650 1745 0.036010 AATCCAACCTCGTCTGGCAG 60.036 55.000 8.58 8.58 32.33 4.85
1890 1985 2.101582 GGAGATGCTCCGTGACTACATT 59.898 50.000 0.00 0.00 41.08 2.71
1938 2033 2.024871 GATGCCTCCTCGTCGTCG 59.975 66.667 0.00 0.00 38.55 5.12
1974 2069 3.164977 TCCGGTGACCTTGGCACA 61.165 61.111 0.00 1.23 44.59 4.57
2070 2165 1.699656 CCTTCCGCTGCTTCGATGTG 61.700 60.000 0.00 0.00 0.00 3.21
2307 2402 2.595463 GCTGTTGCCTCAGTGCCA 60.595 61.111 7.01 0.00 37.70 4.92
3220 3321 1.804326 CCTCCCGTCGTAAACAGCG 60.804 63.158 0.00 0.00 0.00 5.18
3421 3522 1.721664 CTGCTGATGGCGATGGGTTG 61.722 60.000 0.00 0.00 45.43 3.77
3451 3552 1.890979 CCAGGTGCGATCTGATGCC 60.891 63.158 0.00 0.00 34.36 4.40
3459 3560 1.154205 CGATCTGATGCCGTTGGGAC 61.154 60.000 0.00 0.00 34.06 4.46
3471 3572 0.666577 GTTGGGACGAGGAACAGACG 60.667 60.000 0.00 0.00 0.00 4.18
3472 3573 1.111116 TTGGGACGAGGAACAGACGT 61.111 55.000 0.00 0.00 42.84 4.34
3497 3598 1.581447 CTGGCGGGAAAAAGCAGAC 59.419 57.895 0.00 0.00 34.54 3.51
3555 3659 4.770010 ACAGTTTTGTGTTCTTGGAGGAAA 59.230 37.500 0.00 0.00 35.83 3.13
3557 3661 5.807011 CAGTTTTGTGTTCTTGGAGGAAAAG 59.193 40.000 0.00 0.00 0.00 2.27
3566 3670 4.223144 TCTTGGAGGAAAAGAAAAAGGGG 58.777 43.478 0.00 0.00 30.79 4.79
3590 3697 3.786576 CGACGCATCTTGTCTTGTACTAG 59.213 47.826 0.00 0.00 34.17 2.57
3680 3816 8.395633 GTGCAGTAAAGTTTCTCTTTCTTGTAA 58.604 33.333 0.00 0.00 44.18 2.41
3681 3817 8.612619 TGCAGTAAAGTTTCTCTTTCTTGTAAG 58.387 33.333 0.00 0.00 44.18 2.34
3718 4080 7.978982 AGTATGATGCACATTTTGAACTCTAC 58.021 34.615 7.02 0.00 40.07 2.59
3719 4081 5.627499 TGATGCACATTTTGAACTCTACC 57.373 39.130 0.00 0.00 0.00 3.18
3791 4537 7.520451 ACCTCGTGTATGTATGTATGTATGT 57.480 36.000 0.00 0.00 0.00 2.29
3792 4538 8.625786 ACCTCGTGTATGTATGTATGTATGTA 57.374 34.615 0.00 0.00 0.00 2.29
3793 4539 9.239551 ACCTCGTGTATGTATGTATGTATGTAT 57.760 33.333 0.00 0.00 0.00 2.29
3794 4540 9.503427 CCTCGTGTATGTATGTATGTATGTATG 57.497 37.037 0.00 0.00 0.00 2.39
3803 4549 9.849166 TGTATGTATGTATGTATGTATTGGACG 57.151 33.333 0.00 0.00 0.00 4.79
3806 4552 8.173542 TGTATGTATGTATGTATTGGACGAGT 57.826 34.615 0.00 0.00 0.00 4.18
3807 4553 8.079809 TGTATGTATGTATGTATTGGACGAGTG 58.920 37.037 0.00 0.00 0.00 3.51
3808 4554 5.838529 TGTATGTATGTATTGGACGAGTGG 58.161 41.667 0.00 0.00 0.00 4.00
3809 4555 5.595133 TGTATGTATGTATTGGACGAGTGGA 59.405 40.000 0.00 0.00 0.00 4.02
3810 4556 4.649088 TGTATGTATTGGACGAGTGGAG 57.351 45.455 0.00 0.00 0.00 3.86
3811 4557 3.383505 TGTATGTATTGGACGAGTGGAGG 59.616 47.826 0.00 0.00 0.00 4.30
3812 4558 1.933021 TGTATTGGACGAGTGGAGGT 58.067 50.000 0.00 0.00 0.00 3.85
3813 4559 3.090210 TGTATTGGACGAGTGGAGGTA 57.910 47.619 0.00 0.00 0.00 3.08
3814 4560 3.638860 TGTATTGGACGAGTGGAGGTAT 58.361 45.455 0.00 0.00 0.00 2.73
3815 4561 3.635373 TGTATTGGACGAGTGGAGGTATC 59.365 47.826 0.00 0.00 0.00 2.24
3816 4562 2.526888 TTGGACGAGTGGAGGTATCT 57.473 50.000 0.00 0.00 0.00 1.98
3817 4563 2.526888 TGGACGAGTGGAGGTATCTT 57.473 50.000 0.00 0.00 0.00 2.40
3964 4718 0.820891 GGGCGATGCAATCCACTGAT 60.821 55.000 0.00 0.00 41.39 2.90
4138 4893 0.317938 CGCCGCAGACACCTATACTC 60.318 60.000 0.00 0.00 0.00 2.59
4162 4917 4.436998 GCAGCCGGTACAGAGCGT 62.437 66.667 1.90 0.00 45.10 5.07
4171 4926 2.052690 TACAGAGCGTGAGAGGGGC 61.053 63.158 0.00 0.00 0.00 5.80
4291 5046 4.809496 CCGCAGCAGCCCTCCATT 62.809 66.667 0.00 0.00 37.52 3.16
4292 5047 2.190313 CGCAGCAGCCCTCCATTA 59.810 61.111 0.00 0.00 37.52 1.90
4293 5048 1.890979 CGCAGCAGCCCTCCATTAG 60.891 63.158 0.00 0.00 37.52 1.73
4294 5049 1.527844 GCAGCAGCCCTCCATTAGG 60.528 63.158 0.00 0.00 46.09 2.69
4299 5054 4.259952 GCCCTCCATTAGGCCAAC 57.740 61.111 5.01 0.00 45.03 3.77
4300 5055 1.615262 GCCCTCCATTAGGCCAACT 59.385 57.895 5.01 0.00 45.03 3.16
4301 5056 0.466372 GCCCTCCATTAGGCCAACTC 60.466 60.000 5.01 0.00 45.03 3.01
4302 5057 1.216990 CCCTCCATTAGGCCAACTCT 58.783 55.000 5.01 0.00 45.03 3.24
4303 5058 2.408565 CCCTCCATTAGGCCAACTCTA 58.591 52.381 5.01 0.00 45.03 2.43
4304 5059 2.104963 CCCTCCATTAGGCCAACTCTAC 59.895 54.545 5.01 0.00 45.03 2.59
4305 5060 2.771943 CCTCCATTAGGCCAACTCTACA 59.228 50.000 5.01 0.00 38.97 2.74
4306 5061 3.432326 CCTCCATTAGGCCAACTCTACAC 60.432 52.174 5.01 0.00 38.97 2.90
4307 5062 2.504175 TCCATTAGGCCAACTCTACACC 59.496 50.000 5.01 0.00 33.74 4.16
4308 5063 2.238646 CCATTAGGCCAACTCTACACCA 59.761 50.000 5.01 0.00 0.00 4.17
4309 5064 3.270877 CATTAGGCCAACTCTACACCAC 58.729 50.000 5.01 0.00 0.00 4.16
4310 5065 0.892755 TAGGCCAACTCTACACCACG 59.107 55.000 5.01 0.00 0.00 4.94
4311 5066 0.830444 AGGCCAACTCTACACCACGA 60.830 55.000 5.01 0.00 0.00 4.35
4312 5067 0.669625 GGCCAACTCTACACCACGAC 60.670 60.000 0.00 0.00 0.00 4.34
4313 5068 0.669625 GCCAACTCTACACCACGACC 60.670 60.000 0.00 0.00 0.00 4.79
4314 5069 0.966920 CCAACTCTACACCACGACCT 59.033 55.000 0.00 0.00 0.00 3.85
4315 5070 1.067776 CCAACTCTACACCACGACCTC 60.068 57.143 0.00 0.00 0.00 3.85
4316 5071 1.611977 CAACTCTACACCACGACCTCA 59.388 52.381 0.00 0.00 0.00 3.86
4317 5072 1.991121 ACTCTACACCACGACCTCAA 58.009 50.000 0.00 0.00 0.00 3.02
4318 5073 2.313317 ACTCTACACCACGACCTCAAA 58.687 47.619 0.00 0.00 0.00 2.69
4319 5074 2.035576 ACTCTACACCACGACCTCAAAC 59.964 50.000 0.00 0.00 0.00 2.93
4320 5075 1.001048 TCTACACCACGACCTCAAACG 60.001 52.381 0.00 0.00 0.00 3.60
4321 5076 0.032403 TACACCACGACCTCAAACGG 59.968 55.000 0.00 0.00 0.00 4.44
4322 5077 1.068417 CACCACGACCTCAAACGGA 59.932 57.895 0.00 0.00 0.00 4.69
4323 5078 1.068585 ACCACGACCTCAAACGGAC 59.931 57.895 0.00 0.00 0.00 4.79
4324 5079 1.666872 CCACGACCTCAAACGGACC 60.667 63.158 0.00 0.00 0.00 4.46
4325 5080 1.366366 CACGACCTCAAACGGACCT 59.634 57.895 0.00 0.00 0.00 3.85
4326 5081 0.666577 CACGACCTCAAACGGACCTC 60.667 60.000 0.00 0.00 0.00 3.85
4327 5082 0.826672 ACGACCTCAAACGGACCTCT 60.827 55.000 0.00 0.00 0.00 3.69
4328 5083 0.388649 CGACCTCAAACGGACCTCTG 60.389 60.000 0.00 0.00 0.00 3.35
4329 5084 0.680061 GACCTCAAACGGACCTCTGT 59.320 55.000 0.00 0.00 36.96 3.41
4330 5085 1.070289 GACCTCAAACGGACCTCTGTT 59.930 52.381 0.00 0.00 46.62 3.16
4338 5093 2.968675 ACGGACCTCTGTTTTATTCGG 58.031 47.619 0.00 0.00 29.59 4.30
4339 5094 2.564062 ACGGACCTCTGTTTTATTCGGA 59.436 45.455 0.00 0.00 29.59 4.55
4340 5095 3.197116 ACGGACCTCTGTTTTATTCGGAT 59.803 43.478 0.00 0.00 29.59 4.18
4341 5096 4.189231 CGGACCTCTGTTTTATTCGGATT 58.811 43.478 0.00 0.00 0.00 3.01
4342 5097 4.634443 CGGACCTCTGTTTTATTCGGATTT 59.366 41.667 0.00 0.00 0.00 2.17
4343 5098 5.123344 CGGACCTCTGTTTTATTCGGATTTT 59.877 40.000 0.00 0.00 0.00 1.82
4344 5099 6.322491 GGACCTCTGTTTTATTCGGATTTTG 58.678 40.000 0.00 0.00 0.00 2.44
4345 5100 6.072119 GGACCTCTGTTTTATTCGGATTTTGT 60.072 38.462 0.00 0.00 0.00 2.83
4346 5101 6.909909 ACCTCTGTTTTATTCGGATTTTGTC 58.090 36.000 0.00 0.00 0.00 3.18
4347 5102 6.072119 ACCTCTGTTTTATTCGGATTTTGTCC 60.072 38.462 0.00 0.00 44.10 4.02
4358 5113 4.168922 GGATTTTGTCCGTTTGGGTAAG 57.831 45.455 0.00 0.00 37.23 2.34
4359 5114 3.057104 GGATTTTGTCCGTTTGGGTAAGG 60.057 47.826 0.00 0.00 37.23 2.69
4360 5115 3.294038 TTTTGTCCGTTTGGGTAAGGA 57.706 42.857 0.00 0.00 37.00 3.36
4361 5116 3.294038 TTTGTCCGTTTGGGTAAGGAA 57.706 42.857 0.00 0.00 37.00 3.36
4362 5117 3.512219 TTGTCCGTTTGGGTAAGGAAT 57.488 42.857 0.00 0.00 37.00 3.01
4363 5118 3.512219 TGTCCGTTTGGGTAAGGAATT 57.488 42.857 0.00 0.00 37.00 2.17
4364 5119 4.637387 TGTCCGTTTGGGTAAGGAATTA 57.363 40.909 0.00 0.00 37.00 1.40
4365 5120 4.581868 TGTCCGTTTGGGTAAGGAATTAG 58.418 43.478 0.00 0.00 37.00 1.73
4366 5121 3.943381 GTCCGTTTGGGTAAGGAATTAGG 59.057 47.826 0.00 0.00 37.00 2.69
4367 5122 3.054213 TCCGTTTGGGTAAGGAATTAGGG 60.054 47.826 0.00 0.00 37.00 3.53
4368 5123 3.308617 CCGTTTGGGTAAGGAATTAGGGT 60.309 47.826 0.00 0.00 0.00 4.34
4369 5124 4.338012 CGTTTGGGTAAGGAATTAGGGTT 58.662 43.478 0.00 0.00 0.00 4.11
4370 5125 4.157105 CGTTTGGGTAAGGAATTAGGGTTG 59.843 45.833 0.00 0.00 0.00 3.77
4371 5126 5.081728 GTTTGGGTAAGGAATTAGGGTTGT 58.918 41.667 0.00 0.00 0.00 3.32
4372 5127 4.310022 TGGGTAAGGAATTAGGGTTGTG 57.690 45.455 0.00 0.00 0.00 3.33
4373 5128 3.658705 TGGGTAAGGAATTAGGGTTGTGT 59.341 43.478 0.00 0.00 0.00 3.72
4374 5129 4.263594 TGGGTAAGGAATTAGGGTTGTGTC 60.264 45.833 0.00 0.00 0.00 3.67
4375 5130 4.267536 GGTAAGGAATTAGGGTTGTGTCC 58.732 47.826 0.00 0.00 0.00 4.02
4376 5131 2.781681 AGGAATTAGGGTTGTGTCCG 57.218 50.000 0.00 0.00 0.00 4.79
4377 5132 1.280998 AGGAATTAGGGTTGTGTCCGG 59.719 52.381 0.00 0.00 0.00 5.14
4378 5133 1.279846 GGAATTAGGGTTGTGTCCGGA 59.720 52.381 0.00 0.00 0.00 5.14
4379 5134 2.353323 GAATTAGGGTTGTGTCCGGAC 58.647 52.381 28.17 28.17 0.00 4.79
4380 5135 0.248289 ATTAGGGTTGTGTCCGGACG 59.752 55.000 28.70 0.00 0.00 4.79
4381 5136 1.114722 TTAGGGTTGTGTCCGGACGT 61.115 55.000 28.70 8.91 0.00 4.34
4382 5137 1.808531 TAGGGTTGTGTCCGGACGTG 61.809 60.000 28.70 0.00 0.00 4.49
4383 5138 2.107546 GGTTGTGTCCGGACGTGT 59.892 61.111 28.70 0.00 0.00 4.49
4384 5139 1.522130 GGTTGTGTCCGGACGTGTT 60.522 57.895 28.70 0.00 0.00 3.32
4385 5140 1.493134 GGTTGTGTCCGGACGTGTTC 61.493 60.000 28.70 16.92 0.00 3.18
4386 5141 0.529119 GTTGTGTCCGGACGTGTTCT 60.529 55.000 28.70 0.00 0.00 3.01
4387 5142 0.528901 TTGTGTCCGGACGTGTTCTG 60.529 55.000 28.70 0.00 0.00 3.02
4391 5146 2.978824 CCGGACGTGTTCTGGGAT 59.021 61.111 0.00 0.00 46.30 3.85
4392 5147 1.447838 CCGGACGTGTTCTGGGATG 60.448 63.158 0.00 0.00 46.30 3.51
4393 5148 2.100631 CGGACGTGTTCTGGGATGC 61.101 63.158 0.00 0.00 0.00 3.91
4394 5149 2.100631 GGACGTGTTCTGGGATGCG 61.101 63.158 0.00 0.00 0.00 4.73
4395 5150 2.047274 ACGTGTTCTGGGATGCGG 60.047 61.111 0.00 0.00 0.00 5.69
4396 5151 2.047274 CGTGTTCTGGGATGCGGT 60.047 61.111 0.00 0.00 0.00 5.68
4397 5152 2.390599 CGTGTTCTGGGATGCGGTG 61.391 63.158 0.00 0.00 0.00 4.94
4398 5153 2.040544 GTGTTCTGGGATGCGGTGG 61.041 63.158 0.00 0.00 0.00 4.61
4399 5154 3.134127 GTTCTGGGATGCGGTGGC 61.134 66.667 0.00 0.00 40.52 5.01
4400 5155 4.424711 TTCTGGGATGCGGTGGCC 62.425 66.667 0.00 0.00 38.85 5.36
4431 5186 4.458164 GCGGTCGCATTCCTTTTG 57.542 55.556 10.67 0.00 41.49 2.44
4432 5187 1.801512 GCGGTCGCATTCCTTTTGC 60.802 57.895 10.67 0.00 41.49 3.68
4433 5188 1.154035 CGGTCGCATTCCTTTTGCC 60.154 57.895 0.00 0.00 36.75 4.52
4434 5189 1.215382 GGTCGCATTCCTTTTGCCC 59.785 57.895 0.00 0.00 36.75 5.36
4435 5190 1.215382 GTCGCATTCCTTTTGCCCC 59.785 57.895 0.00 0.00 36.75 5.80
4436 5191 1.228706 TCGCATTCCTTTTGCCCCA 60.229 52.632 0.00 0.00 36.75 4.96
4437 5192 0.614415 TCGCATTCCTTTTGCCCCAT 60.614 50.000 0.00 0.00 36.75 4.00
4438 5193 0.249955 CGCATTCCTTTTGCCCCATT 59.750 50.000 0.00 0.00 36.75 3.16
4439 5194 1.740043 CGCATTCCTTTTGCCCCATTC 60.740 52.381 0.00 0.00 36.75 2.67
4440 5195 1.556451 GCATTCCTTTTGCCCCATTCT 59.444 47.619 0.00 0.00 33.95 2.40
4441 5196 2.678769 GCATTCCTTTTGCCCCATTCTG 60.679 50.000 0.00 0.00 33.95 3.02
4442 5197 2.397044 TTCCTTTTGCCCCATTCTGT 57.603 45.000 0.00 0.00 0.00 3.41
4443 5198 1.923356 TCCTTTTGCCCCATTCTGTC 58.077 50.000 0.00 0.00 0.00 3.51
4444 5199 0.897621 CCTTTTGCCCCATTCTGTCC 59.102 55.000 0.00 0.00 0.00 4.02
4445 5200 0.527565 CTTTTGCCCCATTCTGTCCG 59.472 55.000 0.00 0.00 0.00 4.79
4446 5201 1.531739 TTTTGCCCCATTCTGTCCGC 61.532 55.000 0.00 0.00 0.00 5.54
4447 5202 4.776322 TGCCCCATTCTGTCCGCG 62.776 66.667 0.00 0.00 0.00 6.46
4448 5203 4.778143 GCCCCATTCTGTCCGCGT 62.778 66.667 4.92 0.00 0.00 6.01
4449 5204 2.046314 CCCCATTCTGTCCGCGTT 60.046 61.111 4.92 0.00 0.00 4.84
4450 5205 1.674322 CCCCATTCTGTCCGCGTTT 60.674 57.895 4.92 0.00 0.00 3.60
4451 5206 0.391927 CCCCATTCTGTCCGCGTTTA 60.392 55.000 4.92 0.00 0.00 2.01
4452 5207 1.444836 CCCATTCTGTCCGCGTTTAA 58.555 50.000 4.92 0.00 0.00 1.52
4453 5208 1.807742 CCCATTCTGTCCGCGTTTAAA 59.192 47.619 4.92 0.00 0.00 1.52
4454 5209 2.422127 CCCATTCTGTCCGCGTTTAAAT 59.578 45.455 4.92 0.00 0.00 1.40
4455 5210 3.425404 CCATTCTGTCCGCGTTTAAATG 58.575 45.455 4.92 8.25 0.00 2.32
4456 5211 2.604969 TTCTGTCCGCGTTTAAATGC 57.395 45.000 20.32 20.32 37.57 3.56
4457 5212 0.800012 TCTGTCCGCGTTTAAATGCC 59.200 50.000 23.32 12.21 37.65 4.40
4458 5213 0.519519 CTGTCCGCGTTTAAATGCCA 59.480 50.000 23.32 15.57 37.65 4.92
4459 5214 0.952280 TGTCCGCGTTTAAATGCCAA 59.048 45.000 23.32 11.13 37.65 4.52
4460 5215 1.068885 TGTCCGCGTTTAAATGCCAAG 60.069 47.619 23.32 14.03 37.65 3.61
4461 5216 0.109504 TCCGCGTTTAAATGCCAAGC 60.110 50.000 23.32 7.49 37.65 4.01
4462 5217 1.075979 CCGCGTTTAAATGCCAAGCC 61.076 55.000 23.32 0.00 37.65 4.35
4463 5218 0.387878 CGCGTTTAAATGCCAAGCCA 60.388 50.000 23.32 0.00 37.65 4.75
4464 5219 1.735369 CGCGTTTAAATGCCAAGCCAT 60.735 47.619 23.32 0.00 37.65 4.40
4465 5220 2.478709 CGCGTTTAAATGCCAAGCCATA 60.479 45.455 23.32 0.00 37.65 2.74
4466 5221 3.115554 GCGTTTAAATGCCAAGCCATAG 58.884 45.455 19.72 0.00 34.89 2.23
4467 5222 3.428862 GCGTTTAAATGCCAAGCCATAGT 60.429 43.478 19.72 0.00 34.89 2.12
4468 5223 4.743493 CGTTTAAATGCCAAGCCATAGTT 58.257 39.130 0.00 0.00 0.00 2.24
4469 5224 4.798387 CGTTTAAATGCCAAGCCATAGTTC 59.202 41.667 0.00 0.00 0.00 3.01
4470 5225 5.621104 CGTTTAAATGCCAAGCCATAGTTCA 60.621 40.000 0.00 0.00 0.00 3.18
4471 5226 5.581126 TTAAATGCCAAGCCATAGTTCAG 57.419 39.130 0.00 0.00 0.00 3.02
4472 5227 2.062971 ATGCCAAGCCATAGTTCAGG 57.937 50.000 0.00 0.00 0.00 3.86
4477 5232 3.833304 GCCATAGTTCAGGCCAGC 58.167 61.111 5.01 0.00 45.18 4.85
4478 5233 2.182842 GCCATAGTTCAGGCCAGCG 61.183 63.158 5.01 0.00 45.18 5.18
4479 5234 1.524621 CCATAGTTCAGGCCAGCGG 60.525 63.158 5.01 0.00 0.00 5.52
4480 5235 1.221840 CATAGTTCAGGCCAGCGGT 59.778 57.895 5.01 0.00 0.00 5.68
4481 5236 0.811616 CATAGTTCAGGCCAGCGGTC 60.812 60.000 5.01 0.00 0.00 4.79
4482 5237 1.972660 ATAGTTCAGGCCAGCGGTCC 61.973 60.000 5.01 0.00 0.00 4.46
4489 5244 4.778143 GCCAGCGGTCCGGTTCAT 62.778 66.667 14.57 0.00 34.62 2.57
4490 5245 2.511600 CCAGCGGTCCGGTTCATC 60.512 66.667 14.57 0.00 34.62 2.92
4491 5246 2.579201 CAGCGGTCCGGTTCATCT 59.421 61.111 14.57 0.00 34.62 2.90
4492 5247 1.519455 CAGCGGTCCGGTTCATCTC 60.519 63.158 14.57 0.00 34.62 2.75
4493 5248 2.582498 GCGGTCCGGTTCATCTCG 60.582 66.667 14.38 0.00 0.00 4.04
4494 5249 2.582498 CGGTCCGGTTCATCTCGC 60.582 66.667 2.34 0.00 0.00 5.03
4495 5250 2.202892 GGTCCGGTTCATCTCGCC 60.203 66.667 0.00 0.00 0.00 5.54
4496 5251 2.582498 GTCCGGTTCATCTCGCCG 60.582 66.667 0.00 0.00 44.55 6.46
4499 5254 4.812476 CGGTTCATCTCGCCGGCA 62.812 66.667 28.98 12.94 41.60 5.69
4500 5255 2.435938 GGTTCATCTCGCCGGCAA 60.436 61.111 28.98 7.25 0.00 4.52
4501 5256 2.750888 GGTTCATCTCGCCGGCAAC 61.751 63.158 28.98 20.96 0.00 4.17
4502 5257 2.032634 GTTCATCTCGCCGGCAACA 61.033 57.895 28.98 9.22 0.00 3.33
4503 5258 1.741401 TTCATCTCGCCGGCAACAG 60.741 57.895 28.98 18.60 0.00 3.16
4504 5259 2.125552 CATCTCGCCGGCAACAGA 60.126 61.111 28.98 23.31 0.00 3.41
4505 5260 2.169789 CATCTCGCCGGCAACAGAG 61.170 63.158 28.98 23.57 34.69 3.35
4506 5261 4.742201 TCTCGCCGGCAACAGAGC 62.742 66.667 28.98 0.00 33.78 4.09
4523 5278 4.814294 CCAGCGGCCTACACGTCC 62.814 72.222 0.00 0.00 0.00 4.79
4524 5279 4.063967 CAGCGGCCTACACGTCCA 62.064 66.667 0.00 0.00 0.00 4.02
4525 5280 3.075005 AGCGGCCTACACGTCCAT 61.075 61.111 0.00 0.00 0.00 3.41
4526 5281 2.585247 GCGGCCTACACGTCCATC 60.585 66.667 0.00 0.00 0.00 3.51
4527 5282 2.278596 CGGCCTACACGTCCATCG 60.279 66.667 0.00 0.00 46.00 3.84
4528 5283 2.585247 GGCCTACACGTCCATCGC 60.585 66.667 0.00 0.00 44.19 4.58
4529 5284 2.585247 GCCTACACGTCCATCGCC 60.585 66.667 0.00 0.00 44.19 5.54
4530 5285 2.278596 CCTACACGTCCATCGCCG 60.279 66.667 0.00 0.00 44.19 6.46
4531 5286 2.278596 CTACACGTCCATCGCCGG 60.279 66.667 0.00 0.00 44.19 6.13
4532 5287 4.501714 TACACGTCCATCGCCGGC 62.502 66.667 19.07 19.07 44.19 6.13
4535 5290 4.891727 ACGTCCATCGCCGGCATC 62.892 66.667 28.98 8.26 44.19 3.91
4536 5291 4.889856 CGTCCATCGCCGGCATCA 62.890 66.667 28.98 10.08 0.00 3.07
4537 5292 2.969238 GTCCATCGCCGGCATCAG 60.969 66.667 28.98 12.41 0.00 2.90
4538 5293 4.916293 TCCATCGCCGGCATCAGC 62.916 66.667 28.98 0.00 41.10 4.26
4566 5321 2.872408 GCAATACAGCCAGCCTTCA 58.128 52.632 0.00 0.00 0.00 3.02
4567 5322 1.176527 GCAATACAGCCAGCCTTCAA 58.823 50.000 0.00 0.00 0.00 2.69
4568 5323 1.545582 GCAATACAGCCAGCCTTCAAA 59.454 47.619 0.00 0.00 0.00 2.69
4569 5324 2.029110 GCAATACAGCCAGCCTTCAAAA 60.029 45.455 0.00 0.00 0.00 2.44
4570 5325 3.368739 GCAATACAGCCAGCCTTCAAAAT 60.369 43.478 0.00 0.00 0.00 1.82
4571 5326 4.178540 CAATACAGCCAGCCTTCAAAATG 58.821 43.478 0.00 0.00 0.00 2.32
4572 5327 1.999648 ACAGCCAGCCTTCAAAATGA 58.000 45.000 0.00 0.00 0.00 2.57
4573 5328 2.318908 ACAGCCAGCCTTCAAAATGAA 58.681 42.857 0.00 0.00 34.79 2.57
4574 5329 2.901839 ACAGCCAGCCTTCAAAATGAAT 59.098 40.909 0.00 0.00 35.59 2.57
4575 5330 4.088634 ACAGCCAGCCTTCAAAATGAATA 58.911 39.130 0.00 0.00 35.59 1.75
4576 5331 4.159135 ACAGCCAGCCTTCAAAATGAATAG 59.841 41.667 0.00 0.00 35.59 1.73
4577 5332 4.159135 CAGCCAGCCTTCAAAATGAATAGT 59.841 41.667 0.00 0.00 35.59 2.12
4578 5333 4.774200 AGCCAGCCTTCAAAATGAATAGTT 59.226 37.500 0.00 0.00 35.59 2.24
4579 5334 4.866486 GCCAGCCTTCAAAATGAATAGTTG 59.134 41.667 0.00 0.00 35.59 3.16
4580 5335 5.567423 GCCAGCCTTCAAAATGAATAGTTGT 60.567 40.000 0.00 0.00 35.59 3.32
4581 5336 6.095377 CCAGCCTTCAAAATGAATAGTTGTC 58.905 40.000 0.00 0.00 35.59 3.18
4582 5337 6.095377 CAGCCTTCAAAATGAATAGTTGTCC 58.905 40.000 0.00 0.00 35.59 4.02
4583 5338 6.012745 AGCCTTCAAAATGAATAGTTGTCCT 58.987 36.000 0.00 0.00 35.59 3.85
4584 5339 6.151817 AGCCTTCAAAATGAATAGTTGTCCTC 59.848 38.462 0.00 0.00 35.59 3.71
4585 5340 6.546395 CCTTCAAAATGAATAGTTGTCCTCG 58.454 40.000 0.00 0.00 35.59 4.63
4586 5341 5.545658 TCAAAATGAATAGTTGTCCTCGC 57.454 39.130 0.00 0.00 0.00 5.03
4587 5342 4.394920 TCAAAATGAATAGTTGTCCTCGCC 59.605 41.667 0.00 0.00 0.00 5.54
4588 5343 2.225068 ATGAATAGTTGTCCTCGCCG 57.775 50.000 0.00 0.00 0.00 6.46
4589 5344 0.174845 TGAATAGTTGTCCTCGCCGG 59.825 55.000 0.00 0.00 0.00 6.13
4590 5345 1.152383 GAATAGTTGTCCTCGCCGGC 61.152 60.000 19.07 19.07 0.00 6.13
4591 5346 1.895020 AATAGTTGTCCTCGCCGGCA 61.895 55.000 28.98 12.94 0.00 5.69
4592 5347 1.895020 ATAGTTGTCCTCGCCGGCAA 61.895 55.000 28.98 7.25 0.00 4.52
4593 5348 2.775032 TAGTTGTCCTCGCCGGCAAC 62.775 60.000 28.98 21.22 43.78 4.17
4594 5349 4.243008 TTGTCCTCGCCGGCAACA 62.243 61.111 28.98 20.72 0.00 3.33
4595 5350 4.980805 TGTCCTCGCCGGCAACAC 62.981 66.667 28.98 16.94 0.00 3.32
4596 5351 4.980805 GTCCTCGCCGGCAACACA 62.981 66.667 28.98 2.06 0.00 3.72
4597 5352 4.680237 TCCTCGCCGGCAACACAG 62.680 66.667 28.98 12.94 0.00 3.66
4605 5360 3.050275 GGCAACACAGCCGACCTC 61.050 66.667 0.00 0.00 46.12 3.85
4606 5361 3.050275 GCAACACAGCCGACCTCC 61.050 66.667 0.00 0.00 0.00 4.30
4607 5362 2.425592 CAACACAGCCGACCTCCA 59.574 61.111 0.00 0.00 0.00 3.86
4608 5363 1.669115 CAACACAGCCGACCTCCAG 60.669 63.158 0.00 0.00 0.00 3.86
4609 5364 1.837051 AACACAGCCGACCTCCAGA 60.837 57.895 0.00 0.00 0.00 3.86
4610 5365 1.407656 AACACAGCCGACCTCCAGAA 61.408 55.000 0.00 0.00 0.00 3.02
4611 5366 1.194781 ACACAGCCGACCTCCAGAAT 61.195 55.000 0.00 0.00 0.00 2.40
4612 5367 0.742281 CACAGCCGACCTCCAGAATG 60.742 60.000 0.00 0.00 0.00 2.67
4613 5368 0.904865 ACAGCCGACCTCCAGAATGA 60.905 55.000 0.00 0.00 39.69 2.57
4614 5369 0.250234 CAGCCGACCTCCAGAATGAA 59.750 55.000 0.00 0.00 39.69 2.57
4615 5370 1.134280 CAGCCGACCTCCAGAATGAAT 60.134 52.381 0.00 0.00 39.69 2.57
4616 5371 1.134280 AGCCGACCTCCAGAATGAATG 60.134 52.381 0.00 0.00 39.69 2.67
4617 5372 1.407437 GCCGACCTCCAGAATGAATGT 60.407 52.381 0.00 0.00 39.69 2.71
4618 5373 2.941415 GCCGACCTCCAGAATGAATGTT 60.941 50.000 0.00 0.00 39.69 2.71
4619 5374 3.347216 CCGACCTCCAGAATGAATGTTT 58.653 45.455 0.00 0.00 39.69 2.83
4620 5375 3.758554 CCGACCTCCAGAATGAATGTTTT 59.241 43.478 0.00 0.00 39.69 2.43
4621 5376 4.218417 CCGACCTCCAGAATGAATGTTTTT 59.782 41.667 0.00 0.00 39.69 1.94
4622 5377 5.393962 CGACCTCCAGAATGAATGTTTTTC 58.606 41.667 0.00 0.00 39.69 2.29
4623 5378 5.182001 CGACCTCCAGAATGAATGTTTTTCT 59.818 40.000 0.00 0.00 39.69 2.52
4624 5379 6.581171 ACCTCCAGAATGAATGTTTTTCTC 57.419 37.500 0.00 0.00 39.69 2.87
4625 5380 5.182001 ACCTCCAGAATGAATGTTTTTCTCG 59.818 40.000 0.00 0.00 39.69 4.04
4626 5381 5.046910 TCCAGAATGAATGTTTTTCTCGC 57.953 39.130 0.00 0.00 39.69 5.03
4627 5382 4.082787 TCCAGAATGAATGTTTTTCTCGCC 60.083 41.667 0.00 0.00 39.69 5.54
4628 5383 3.848019 CAGAATGAATGTTTTTCTCGCCG 59.152 43.478 0.00 0.00 39.69 6.46
4629 5384 3.751175 AGAATGAATGTTTTTCTCGCCGA 59.249 39.130 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.369692 CCAGTACCACGCCAACTCA 59.630 57.895 0.00 0.00 0.00 3.41
1 2 1.375523 CCCAGTACCACGCCAACTC 60.376 63.158 0.00 0.00 0.00 3.01
2 3 0.832983 TACCCAGTACCACGCCAACT 60.833 55.000 0.00 0.00 0.00 3.16
3 4 0.251073 ATACCCAGTACCACGCCAAC 59.749 55.000 0.00 0.00 0.00 3.77
4 5 0.985760 AATACCCAGTACCACGCCAA 59.014 50.000 0.00 0.00 0.00 4.52
5 6 0.985760 AAATACCCAGTACCACGCCA 59.014 50.000 0.00 0.00 0.00 5.69
8 9 3.078837 AGCAAAAATACCCAGTACCACG 58.921 45.455 0.00 0.00 0.00 4.94
9 10 3.442625 GGAGCAAAAATACCCAGTACCAC 59.557 47.826 0.00 0.00 0.00 4.16
13 14 3.706600 ACGGAGCAAAAATACCCAGTA 57.293 42.857 0.00 0.00 0.00 2.74
14 15 2.579410 ACGGAGCAAAAATACCCAGT 57.421 45.000 0.00 0.00 0.00 4.00
15 16 5.576447 AAATACGGAGCAAAAATACCCAG 57.424 39.130 0.00 0.00 0.00 4.45
16 17 7.648039 ATTAAATACGGAGCAAAAATACCCA 57.352 32.000 0.00 0.00 0.00 4.51
17 18 8.936070 AAATTAAATACGGAGCAAAAATACCC 57.064 30.769 0.00 0.00 0.00 3.69
21 22 9.797556 GAGGTAAATTAAATACGGAGCAAAAAT 57.202 29.630 0.00 0.00 0.00 1.82
22 23 8.245491 GGAGGTAAATTAAATACGGAGCAAAAA 58.755 33.333 0.00 0.00 0.00 1.94
23 24 7.393796 TGGAGGTAAATTAAATACGGAGCAAAA 59.606 33.333 0.00 0.00 0.00 2.44
24 25 6.885376 TGGAGGTAAATTAAATACGGAGCAAA 59.115 34.615 0.00 0.00 0.00 3.68
26 27 5.991861 TGGAGGTAAATTAAATACGGAGCA 58.008 37.500 0.00 0.00 0.00 4.26
27 28 8.788325 ATATGGAGGTAAATTAAATACGGAGC 57.212 34.615 0.00 0.00 0.00 4.70
64 65 9.753674 TTTGACTCAAAATATATGAAGGAACCT 57.246 29.630 1.47 0.00 29.89 3.50
72 73 9.023962 AGCCAAACTTTGACTCAAAATATATGA 57.976 29.630 5.72 0.00 32.75 2.15
76 77 9.247861 AGATAGCCAAACTTTGACTCAAAATAT 57.752 29.630 5.72 0.00 32.75 1.28
77 78 8.635765 AGATAGCCAAACTTTGACTCAAAATA 57.364 30.769 5.72 0.00 32.75 1.40
78 79 7.530426 AGATAGCCAAACTTTGACTCAAAAT 57.470 32.000 5.72 0.00 32.75 1.82
79 80 6.959639 AGATAGCCAAACTTTGACTCAAAA 57.040 33.333 5.72 0.00 32.75 2.44
81 82 8.635765 AAATAGATAGCCAAACTTTGACTCAA 57.364 30.769 2.87 0.00 0.00 3.02
82 83 9.733556 TTAAATAGATAGCCAAACTTTGACTCA 57.266 29.630 2.87 0.00 0.00 3.41
83 84 9.989869 GTTAAATAGATAGCCAAACTTTGACTC 57.010 33.333 2.87 0.00 0.00 3.36
84 85 9.740710 AGTTAAATAGATAGCCAAACTTTGACT 57.259 29.630 2.87 0.00 0.00 3.41
146 147 9.667107 TCAGAACCTCTTTCGAATACAAATTAT 57.333 29.630 0.00 0.00 39.47 1.28
148 149 7.979444 TCAGAACCTCTTTCGAATACAAATT 57.021 32.000 0.00 0.00 39.47 1.82
149 150 7.979444 TTCAGAACCTCTTTCGAATACAAAT 57.021 32.000 0.00 0.00 39.47 2.32
150 151 7.659799 TCATTCAGAACCTCTTTCGAATACAAA 59.340 33.333 0.00 0.00 39.47 2.83
151 152 7.158697 TCATTCAGAACCTCTTTCGAATACAA 58.841 34.615 0.00 0.00 39.47 2.41
152 153 6.697395 TCATTCAGAACCTCTTTCGAATACA 58.303 36.000 0.00 0.00 39.47 2.29
182 183 9.328845 CGGGTTTTATTGTAGGCTAAAGTATAA 57.671 33.333 0.00 0.00 0.00 0.98
183 184 8.703743 TCGGGTTTTATTGTAGGCTAAAGTATA 58.296 33.333 0.00 0.00 0.00 1.47
184 185 7.567458 TCGGGTTTTATTGTAGGCTAAAGTAT 58.433 34.615 0.00 0.00 0.00 2.12
185 186 6.945218 TCGGGTTTTATTGTAGGCTAAAGTA 58.055 36.000 0.00 0.00 0.00 2.24
187 188 6.746745 TTCGGGTTTTATTGTAGGCTAAAG 57.253 37.500 0.00 0.00 0.00 1.85
188 189 6.151480 CCTTTCGGGTTTTATTGTAGGCTAAA 59.849 38.462 0.00 0.00 0.00 1.85
189 190 5.648960 CCTTTCGGGTTTTATTGTAGGCTAA 59.351 40.000 0.00 0.00 0.00 3.09
190 191 5.045724 TCCTTTCGGGTTTTATTGTAGGCTA 60.046 40.000 0.00 0.00 36.25 3.93
191 192 4.014406 CCTTTCGGGTTTTATTGTAGGCT 58.986 43.478 0.00 0.00 0.00 4.58
192 193 4.011698 TCCTTTCGGGTTTTATTGTAGGC 58.988 43.478 0.00 0.00 36.25 3.93
194 195 5.493809 TCCTCCTTTCGGGTTTTATTGTAG 58.506 41.667 0.00 0.00 36.25 2.74
195 196 5.502089 TCCTCCTTTCGGGTTTTATTGTA 57.498 39.130 0.00 0.00 36.25 2.41
196 197 4.376225 TCCTCCTTTCGGGTTTTATTGT 57.624 40.909 0.00 0.00 36.25 2.71
197 198 5.007682 TCTTCCTCCTTTCGGGTTTTATTG 58.992 41.667 0.00 0.00 36.25 1.90
198 199 5.251182 TCTTCCTCCTTTCGGGTTTTATT 57.749 39.130 0.00 0.00 36.25 1.40
200 201 4.710313 TTCTTCCTCCTTTCGGGTTTTA 57.290 40.909 0.00 0.00 36.25 1.52
201 202 3.588210 TTCTTCCTCCTTTCGGGTTTT 57.412 42.857 0.00 0.00 36.25 2.43
202 203 3.588210 TTTCTTCCTCCTTTCGGGTTT 57.412 42.857 0.00 0.00 36.25 3.27
204 205 2.814469 GCTTTTCTTCCTCCTTTCGGGT 60.814 50.000 0.00 0.00 36.25 5.28
205 206 1.813178 GCTTTTCTTCCTCCTTTCGGG 59.187 52.381 0.00 0.00 0.00 5.14
206 207 2.504367 TGCTTTTCTTCCTCCTTTCGG 58.496 47.619 0.00 0.00 0.00 4.30
207 208 3.057946 CCTTGCTTTTCTTCCTCCTTTCG 60.058 47.826 0.00 0.00 0.00 3.46
208 209 3.305676 GCCTTGCTTTTCTTCCTCCTTTC 60.306 47.826 0.00 0.00 0.00 2.62
209 210 2.630098 GCCTTGCTTTTCTTCCTCCTTT 59.370 45.455 0.00 0.00 0.00 3.11
210 211 2.242926 GCCTTGCTTTTCTTCCTCCTT 58.757 47.619 0.00 0.00 0.00 3.36
211 212 1.145738 TGCCTTGCTTTTCTTCCTCCT 59.854 47.619 0.00 0.00 0.00 3.69
212 213 1.543358 CTGCCTTGCTTTTCTTCCTCC 59.457 52.381 0.00 0.00 0.00 4.30
213 214 2.508526 TCTGCCTTGCTTTTCTTCCTC 58.491 47.619 0.00 0.00 0.00 3.71
214 215 2.664402 TCTGCCTTGCTTTTCTTCCT 57.336 45.000 0.00 0.00 0.00 3.36
215 216 3.733443 TTTCTGCCTTGCTTTTCTTCC 57.267 42.857 0.00 0.00 0.00 3.46
216 217 7.148523 CCATTATTTTCTGCCTTGCTTTTCTTC 60.149 37.037 0.00 0.00 0.00 2.87
217 218 6.652062 CCATTATTTTCTGCCTTGCTTTTCTT 59.348 34.615 0.00 0.00 0.00 2.52
218 219 6.168389 CCATTATTTTCTGCCTTGCTTTTCT 58.832 36.000 0.00 0.00 0.00 2.52
219 220 5.934043 ACCATTATTTTCTGCCTTGCTTTTC 59.066 36.000 0.00 0.00 0.00 2.29
220 221 5.702209 CACCATTATTTTCTGCCTTGCTTTT 59.298 36.000 0.00 0.00 0.00 2.27
221 222 5.240121 CACCATTATTTTCTGCCTTGCTTT 58.760 37.500 0.00 0.00 0.00 3.51
222 223 4.824289 CACCATTATTTTCTGCCTTGCTT 58.176 39.130 0.00 0.00 0.00 3.91
223 224 3.368739 GCACCATTATTTTCTGCCTTGCT 60.369 43.478 0.00 0.00 0.00 3.91
224 225 2.931969 GCACCATTATTTTCTGCCTTGC 59.068 45.455 0.00 0.00 0.00 4.01
225 226 3.928375 GTGCACCATTATTTTCTGCCTTG 59.072 43.478 5.22 0.00 0.00 3.61
226 227 3.577848 TGTGCACCATTATTTTCTGCCTT 59.422 39.130 15.69 0.00 0.00 4.35
227 228 3.164268 TGTGCACCATTATTTTCTGCCT 58.836 40.909 15.69 0.00 0.00 4.75
228 229 3.591196 TGTGCACCATTATTTTCTGCC 57.409 42.857 15.69 0.00 0.00 4.85
229 230 4.305769 TGTTGTGCACCATTATTTTCTGC 58.694 39.130 15.69 0.00 0.00 4.26
230 231 6.157904 TCATGTTGTGCACCATTATTTTCTG 58.842 36.000 15.69 0.00 0.00 3.02
231 232 6.343716 TCATGTTGTGCACCATTATTTTCT 57.656 33.333 15.69 0.00 0.00 2.52
232 233 6.646240 AGTTCATGTTGTGCACCATTATTTTC 59.354 34.615 15.69 0.00 0.00 2.29
233 234 6.523840 AGTTCATGTTGTGCACCATTATTTT 58.476 32.000 15.69 0.00 0.00 1.82
234 235 6.100404 AGTTCATGTTGTGCACCATTATTT 57.900 33.333 15.69 0.00 0.00 1.40
240 241 2.495270 ACAAAGTTCATGTTGTGCACCA 59.505 40.909 15.69 6.29 36.62 4.17
248 249 7.479980 TCTTTCGATTGAACAAAGTTCATGTT 58.520 30.769 12.75 2.62 43.37 2.71
260 261 2.411547 CCGCACACTCTTTCGATTGAAC 60.412 50.000 0.00 0.00 32.71 3.18
263 264 0.179215 GCCGCACACTCTTTCGATTG 60.179 55.000 0.00 0.00 0.00 2.67
266 267 0.531974 AAAGCCGCACACTCTTTCGA 60.532 50.000 0.00 0.00 0.00 3.71
267 268 1.144969 TAAAGCCGCACACTCTTTCG 58.855 50.000 0.00 0.00 32.85 3.46
273 274 2.147958 TCGATTTTAAAGCCGCACACT 58.852 42.857 0.00 0.00 0.00 3.55
276 277 7.425595 GCTATATTATCGATTTTAAAGCCGCAC 59.574 37.037 1.71 0.00 0.00 5.34
278 279 7.685594 AGCTATATTATCGATTTTAAAGCCGC 58.314 34.615 1.71 0.00 0.00 6.53
291 292 9.290483 TCTCGCTCATTTTAAGCTATATTATCG 57.710 33.333 0.00 0.00 37.62 2.92
298 302 9.547753 TTTATTCTCTCGCTCATTTTAAGCTAT 57.452 29.630 0.00 0.00 37.62 2.97
310 314 6.703607 TGAATGATTCCTTTATTCTCTCGCTC 59.296 38.462 2.26 0.00 33.21 5.03
367 371 3.571590 TGCTCTGTACCCAACCATTTTT 58.428 40.909 0.00 0.00 0.00 1.94
405 413 3.435026 GGAGAATAGTATTTGCTGCCCCA 60.435 47.826 0.00 0.00 0.00 4.96
455 467 0.802222 CTCGCGTAGGGTGTGATGTG 60.802 60.000 5.77 0.00 42.82 3.21
456 468 0.963856 TCTCGCGTAGGGTGTGATGT 60.964 55.000 5.77 0.00 42.82 3.06
457 469 0.525668 GTCTCGCGTAGGGTGTGATG 60.526 60.000 5.77 0.00 42.82 3.07
458 470 1.664321 GGTCTCGCGTAGGGTGTGAT 61.664 60.000 5.77 0.00 42.82 3.06
459 471 2.338015 GGTCTCGCGTAGGGTGTGA 61.338 63.158 5.77 0.00 42.82 3.58
508 520 2.843113 CTCCCCTTCCTCACTCAAATCT 59.157 50.000 0.00 0.00 0.00 2.40
544 556 1.014352 CCCGTAAGTGTGGCATTAGC 58.986 55.000 0.00 0.00 41.10 3.09
545 557 1.014352 GCCCGTAAGTGTGGCATTAG 58.986 55.000 0.00 0.00 44.70 1.73
546 558 3.162448 GCCCGTAAGTGTGGCATTA 57.838 52.632 0.00 0.00 44.70 1.90
547 559 3.996614 GCCCGTAAGTGTGGCATT 58.003 55.556 0.00 0.00 44.70 3.56
550 562 1.014352 CATTAGCCCGTAAGTGTGGC 58.986 55.000 0.00 0.00 45.70 5.01
551 563 1.014352 GCATTAGCCCGTAAGTGTGG 58.986 55.000 0.00 0.00 33.58 4.17
563 575 1.014352 CCCGTAAGTGTGGCATTAGC 58.986 55.000 0.00 0.00 41.10 3.09
564 576 1.014352 GCCCGTAAGTGTGGCATTAG 58.986 55.000 0.00 0.00 44.70 1.73
565 577 3.162448 GCCCGTAAGTGTGGCATTA 57.838 52.632 0.00 0.00 44.70 1.90
566 578 3.996614 GCCCGTAAGTGTGGCATT 58.003 55.556 0.00 0.00 44.70 3.56
569 581 0.464452 ATCTAGCCCGTAAGTGTGGC 59.536 55.000 0.00 0.00 45.70 5.01
570 582 1.806623 GCATCTAGCCCGTAAGTGTGG 60.807 57.143 0.00 0.00 37.23 4.17
571 583 1.571919 GCATCTAGCCCGTAAGTGTG 58.428 55.000 0.00 0.00 37.23 3.82
585 597 3.304996 CGTAGATGATTCCGTGAGCATCT 60.305 47.826 16.73 16.73 46.50 2.90
601 613 2.040178 GTTCCACATCCTCCCGTAGAT 58.960 52.381 0.00 0.00 0.00 1.98
742 754 2.658285 CCAAGATGCCTATCCAAGCAA 58.342 47.619 0.00 0.00 43.36 3.91
775 787 1.609320 GCTTTCCGTTTGAGAGAGCCT 60.609 52.381 0.00 0.00 0.00 4.58
777 789 1.462670 CTGCTTTCCGTTTGAGAGAGC 59.537 52.381 0.00 0.00 0.00 4.09
788 835 1.004560 TGCACTCTCCTGCTTTCCG 60.005 57.895 0.00 0.00 38.07 4.30
797 844 0.250038 TTGACTGCACTGCACTCTCC 60.250 55.000 0.00 0.00 33.79 3.71
864 930 3.092301 GGTGGGGAAGAAGGAGAAAATG 58.908 50.000 0.00 0.00 0.00 2.32
865 931 2.721906 TGGTGGGGAAGAAGGAGAAAAT 59.278 45.455 0.00 0.00 0.00 1.82
869 935 2.059756 ATTGGTGGGGAAGAAGGAGA 57.940 50.000 0.00 0.00 0.00 3.71
870 936 2.041620 TGAATTGGTGGGGAAGAAGGAG 59.958 50.000 0.00 0.00 0.00 3.69
871 937 2.069775 TGAATTGGTGGGGAAGAAGGA 58.930 47.619 0.00 0.00 0.00 3.36
872 938 2.603075 TGAATTGGTGGGGAAGAAGG 57.397 50.000 0.00 0.00 0.00 3.46
873 939 3.006859 GGTTTGAATTGGTGGGGAAGAAG 59.993 47.826 0.00 0.00 0.00 2.85
874 940 2.969262 GGTTTGAATTGGTGGGGAAGAA 59.031 45.455 0.00 0.00 0.00 2.52
875 941 2.604139 GGTTTGAATTGGTGGGGAAGA 58.396 47.619 0.00 0.00 0.00 2.87
878 944 0.478942 TCGGTTTGAATTGGTGGGGA 59.521 50.000 0.00 0.00 0.00 4.81
882 948 5.621197 TGTTATCTCGGTTTGAATTGGTG 57.379 39.130 0.00 0.00 0.00 4.17
916 982 1.577468 TGTGTGGAGTTGTAGTTGCG 58.423 50.000 0.00 0.00 0.00 4.85
917 983 2.290641 CCTTGTGTGGAGTTGTAGTTGC 59.709 50.000 0.00 0.00 0.00 4.17
920 986 1.540363 CGCCTTGTGTGGAGTTGTAGT 60.540 52.381 0.00 0.00 0.00 2.73
921 987 1.148310 CGCCTTGTGTGGAGTTGTAG 58.852 55.000 0.00 0.00 0.00 2.74
922 988 0.466543 ACGCCTTGTGTGGAGTTGTA 59.533 50.000 0.00 0.00 36.77 2.41
923 989 0.393808 AACGCCTTGTGTGGAGTTGT 60.394 50.000 2.12 0.00 45.80 3.32
924 990 1.531149 CTAACGCCTTGTGTGGAGTTG 59.469 52.381 11.76 0.84 46.67 3.16
925 991 4.977393 AACGCCTTGTGTGGAGTT 57.023 50.000 0.00 0.00 43.49 3.01
927 993 2.386661 ATCTAACGCCTTGTGTGGAG 57.613 50.000 0.00 0.00 0.00 3.86
929 995 2.095263 CCAAATCTAACGCCTTGTGTGG 60.095 50.000 0.00 0.00 0.00 4.17
930 996 2.095263 CCCAAATCTAACGCCTTGTGTG 60.095 50.000 0.00 0.00 0.00 3.82
931 997 2.159382 CCCAAATCTAACGCCTTGTGT 58.841 47.619 0.00 0.00 0.00 3.72
939 1005 1.838077 ACCCCTCTCCCAAATCTAACG 59.162 52.381 0.00 0.00 0.00 3.18
992 1060 1.118356 AGAGGAATGGCTAGGCGAGG 61.118 60.000 12.19 0.00 0.00 4.63
1009 1077 1.006043 ACACCGGAAGAGAGATGGAGA 59.994 52.381 9.46 0.00 0.00 3.71
1010 1078 1.407258 GACACCGGAAGAGAGATGGAG 59.593 57.143 9.46 0.00 0.00 3.86
1014 1082 1.479709 CTGGACACCGGAAGAGAGAT 58.520 55.000 9.46 0.00 29.82 2.75
1015 1083 1.251527 GCTGGACACCGGAAGAGAGA 61.252 60.000 9.46 0.00 29.82 3.10
1028 1107 2.579684 GATGACACGGGAGGCTGGAC 62.580 65.000 0.00 0.00 0.00 4.02
1029 1108 2.284625 ATGACACGGGAGGCTGGA 60.285 61.111 0.00 0.00 0.00 3.86
1126 1209 1.032657 TCCTCTTCTTCTCCGGAGCG 61.033 60.000 27.39 19.13 0.00 5.03
1205 1289 2.159254 GGAGATATCTGAGATCGCAGCC 60.159 54.545 20.45 11.40 35.86 4.85
1210 1294 1.403679 GGGCGGAGATATCTGAGATCG 59.596 57.143 10.74 7.21 0.00 3.69
1216 1304 0.979665 ATGTGGGGCGGAGATATCTG 59.020 55.000 10.74 0.00 0.00 2.90
1229 1317 5.239525 ACGAAAGAAAAGAGAAGAATGTGGG 59.760 40.000 0.00 0.00 0.00 4.61
1240 1328 4.335594 AGAACACCCAACGAAAGAAAAGAG 59.664 41.667 0.00 0.00 0.00 2.85
1246 1334 3.269538 TGAAGAACACCCAACGAAAGA 57.730 42.857 0.00 0.00 0.00 2.52
1251 1339 0.796312 CGGATGAAGAACACCCAACG 59.204 55.000 0.00 0.00 29.57 4.10
1272 1360 1.526575 ATTGGCGTGGCAAGAACTGG 61.527 55.000 14.32 0.00 0.00 4.00
1295 1383 6.064846 AGCAAACAGTTCTTGTACAGATTG 57.935 37.500 0.00 0.00 39.73 2.67
1296 1384 6.699575 AAGCAAACAGTTCTTGTACAGATT 57.300 33.333 0.00 0.00 39.73 2.40
1323 1412 0.319555 GCACTTGTGCGGTACAGAGA 60.320 55.000 10.06 0.00 41.10 3.10
1324 1413 1.291877 GGCACTTGTGCGGTACAGAG 61.292 60.000 17.87 3.48 41.10 3.35
1346 1435 2.484264 GGAGTCGAAGGACCAAATGTTG 59.516 50.000 0.00 0.00 44.54 3.33
1361 1450 1.071471 AACCCTGCTTGTGGAGTCG 59.929 57.895 0.00 0.00 0.00 4.18
1400 1489 1.637553 AGGCTGTCCTGTGATTTGGAT 59.362 47.619 0.00 0.00 42.34 3.41
1419 1508 8.710277 AAGTACTTCTTGCTCAGCTCGAAGAG 62.710 46.154 25.59 11.75 45.99 2.85
1424 1513 2.645730 AGTACTTCTTGCTCAGCTCG 57.354 50.000 0.00 0.00 0.00 5.03
1436 1525 4.557205 TGCTCGAAAGAAGGAAGTACTTC 58.443 43.478 24.73 24.73 45.59 3.01
1438 1527 4.499183 CATGCTCGAAAGAAGGAAGTACT 58.501 43.478 0.00 0.00 41.32 2.73
1439 1528 3.619038 CCATGCTCGAAAGAAGGAAGTAC 59.381 47.826 0.00 0.00 41.32 2.73
1441 1530 2.704572 CCATGCTCGAAAGAAGGAAGT 58.295 47.619 0.00 0.00 41.32 3.01
1479 1571 6.288294 TGTCGATCTTGGAGAGAAAAAGAAA 58.712 36.000 0.00 0.00 38.06 2.52
1482 1574 5.447010 GCATGTCGATCTTGGAGAGAAAAAG 60.447 44.000 0.00 0.00 38.06 2.27
1487 1579 2.382882 AGCATGTCGATCTTGGAGAGA 58.617 47.619 0.00 0.00 39.13 3.10
1488 1580 2.864946 CAAGCATGTCGATCTTGGAGAG 59.135 50.000 0.00 0.00 34.98 3.20
1489 1581 2.497273 TCAAGCATGTCGATCTTGGAGA 59.503 45.455 14.96 0.00 38.13 3.71
1501 1593 0.392060 TGCGCTCAGATCAAGCATGT 60.392 50.000 9.73 0.00 39.81 3.21
1503 1595 1.094073 GGTGCGCTCAGATCAAGCAT 61.094 55.000 9.73 0.00 39.81 3.79
1601 1694 5.474876 ACAAACAGAGAAAGATGGACCAATC 59.525 40.000 0.00 0.00 0.00 2.67
1650 1745 4.425577 ACCGAAACAAGCATGAGATTTC 57.574 40.909 0.00 0.00 0.00 2.17
1890 1985 2.751436 GATTTGCCGCAGCTGGGA 60.751 61.111 30.57 12.21 40.80 4.37
1932 2027 1.212229 GGAGGACAAGGACGACGAC 59.788 63.158 0.00 0.00 0.00 4.34
1935 2030 0.898789 TGGAGGAGGACAAGGACGAC 60.899 60.000 0.00 0.00 0.00 4.34
1938 2033 0.907230 AGCTGGAGGAGGACAAGGAC 60.907 60.000 0.00 0.00 0.00 3.85
1974 2069 1.078143 GAGCTTGGCACGGGAGATT 60.078 57.895 0.00 0.00 0.00 2.40
2134 2229 2.666098 CCCCCAGGACCAAGTACCG 61.666 68.421 0.00 0.00 33.47 4.02
2307 2402 2.033448 TTGGAAGCGTTGCCCGAT 59.967 55.556 0.00 0.00 39.56 4.18
2847 2948 4.740822 ATGTTGCACCCCTCGCCC 62.741 66.667 0.00 0.00 0.00 6.13
3209 3310 2.735478 CGGTGGCGCTGTTTACGA 60.735 61.111 7.64 0.00 0.00 3.43
3298 3399 1.055551 AACACCCCTTGGTACACCGA 61.056 55.000 0.00 0.00 45.57 4.69
3433 3534 1.890979 GGCATCAGATCGCACCTGG 60.891 63.158 0.00 0.00 32.73 4.45
3459 3560 1.467713 GCTTCCTACGTCTGTTCCTCG 60.468 57.143 0.00 0.00 0.00 4.63
3461 3562 1.546476 CAGCTTCCTACGTCTGTTCCT 59.454 52.381 0.00 0.00 0.00 3.36
3471 3572 0.322187 TTTTCCCGCCAGCTTCCTAC 60.322 55.000 0.00 0.00 0.00 3.18
3472 3573 0.402504 TTTTTCCCGCCAGCTTCCTA 59.597 50.000 0.00 0.00 0.00 2.94
3497 3598 7.186804 AGTTCTATCCAATAAATTCAAACGCG 58.813 34.615 3.53 3.53 0.00 6.01
3555 3659 2.265904 GCGTCGCCCCCTTTTTCTT 61.266 57.895 5.75 0.00 0.00 2.52
3557 3661 2.266376 GATGCGTCGCCCCCTTTTTC 62.266 60.000 15.88 0.00 0.00 2.29
3566 3670 1.291877 ACAAGACAAGATGCGTCGCC 61.292 55.000 15.88 0.00 38.46 5.54
3590 3697 4.537135 TTCACCTCCACACAAGAGATAC 57.463 45.455 0.00 0.00 32.86 2.24
3629 3736 3.609103 ACAACTCGCATTCAACAAGAC 57.391 42.857 0.00 0.00 0.00 3.01
3680 3816 7.054751 TGTGCATCATACTCTACTACAGTACT 58.945 38.462 0.00 0.00 0.00 2.73
3681 3817 7.260558 TGTGCATCATACTCTACTACAGTAC 57.739 40.000 0.00 0.00 0.00 2.73
3683 3819 6.968263 ATGTGCATCATACTCTACTACAGT 57.032 37.500 0.00 0.00 34.67 3.55
3684 3820 8.546244 CAAAATGTGCATCATACTCTACTACAG 58.454 37.037 0.00 0.00 35.48 2.74
3686 3822 8.648557 TCAAAATGTGCATCATACTCTACTAC 57.351 34.615 0.00 0.00 35.48 2.73
3688 3824 7.826252 AGTTCAAAATGTGCATCATACTCTACT 59.174 33.333 0.00 0.00 35.48 2.57
3691 3827 6.883217 AGAGTTCAAAATGTGCATCATACTCT 59.117 34.615 17.06 17.06 40.09 3.24
3692 3828 7.081526 AGAGTTCAAAATGTGCATCATACTC 57.918 36.000 14.62 14.62 37.38 2.59
3693 3829 7.066284 GGTAGAGTTCAAAATGTGCATCATACT 59.934 37.037 0.00 0.00 35.48 2.12
3718 4080 2.684881 CCGGAATCATGAGGTCAAAAGG 59.315 50.000 0.00 0.71 0.00 3.11
3719 4081 3.347216 ACCGGAATCATGAGGTCAAAAG 58.653 45.455 9.46 0.00 29.76 2.27
3790 4536 3.383825 ACCTCCACTCGTCCAATACATAC 59.616 47.826 0.00 0.00 0.00 2.39
3791 4537 3.638860 ACCTCCACTCGTCCAATACATA 58.361 45.455 0.00 0.00 0.00 2.29
3792 4538 2.467880 ACCTCCACTCGTCCAATACAT 58.532 47.619 0.00 0.00 0.00 2.29
3793 4539 1.933021 ACCTCCACTCGTCCAATACA 58.067 50.000 0.00 0.00 0.00 2.29
3794 4540 3.890147 AGATACCTCCACTCGTCCAATAC 59.110 47.826 0.00 0.00 0.00 1.89
3795 4541 4.180377 AGATACCTCCACTCGTCCAATA 57.820 45.455 0.00 0.00 0.00 1.90
3797 4543 2.526888 AGATACCTCCACTCGTCCAA 57.473 50.000 0.00 0.00 0.00 3.53
3799 4545 3.889520 AAAAGATACCTCCACTCGTCC 57.110 47.619 0.00 0.00 0.00 4.79
3801 4547 3.335579 GCAAAAAGATACCTCCACTCGT 58.664 45.455 0.00 0.00 0.00 4.18
3802 4548 2.348666 CGCAAAAAGATACCTCCACTCG 59.651 50.000 0.00 0.00 0.00 4.18
3803 4549 3.335579 ACGCAAAAAGATACCTCCACTC 58.664 45.455 0.00 0.00 0.00 3.51
3804 4550 3.335579 GACGCAAAAAGATACCTCCACT 58.664 45.455 0.00 0.00 0.00 4.00
3805 4551 2.093783 CGACGCAAAAAGATACCTCCAC 59.906 50.000 0.00 0.00 0.00 4.02
3806 4552 2.343101 CGACGCAAAAAGATACCTCCA 58.657 47.619 0.00 0.00 0.00 3.86
3807 4553 1.062148 GCGACGCAAAAAGATACCTCC 59.938 52.381 16.42 0.00 0.00 4.30
3808 4554 1.730064 TGCGACGCAAAAAGATACCTC 59.270 47.619 22.24 0.00 34.76 3.85
3809 4555 1.803334 TGCGACGCAAAAAGATACCT 58.197 45.000 22.24 0.00 34.76 3.08
3810 4556 2.440501 CATGCGACGCAAAAAGATACC 58.559 47.619 28.24 0.00 43.62 2.73
3811 4557 2.159572 ACCATGCGACGCAAAAAGATAC 60.160 45.455 28.24 0.00 43.62 2.24
3812 4558 2.080693 ACCATGCGACGCAAAAAGATA 58.919 42.857 28.24 0.00 43.62 1.98
3813 4559 0.881118 ACCATGCGACGCAAAAAGAT 59.119 45.000 28.24 6.01 43.62 2.40
3814 4560 0.040514 CACCATGCGACGCAAAAAGA 60.041 50.000 28.24 1.36 43.62 2.52
3815 4561 1.608093 GCACCATGCGACGCAAAAAG 61.608 55.000 28.24 17.62 43.62 2.27
3816 4562 1.659954 GCACCATGCGACGCAAAAA 60.660 52.632 28.24 2.70 43.62 1.94
3817 4563 2.050533 GCACCATGCGACGCAAAA 60.051 55.556 28.24 3.15 43.62 2.44
3949 4703 2.106166 AGGAGGATCAGTGGATTGCATC 59.894 50.000 0.00 0.00 36.25 3.91
3981 4736 4.204028 GGCACCACCACCACAGGT 62.204 66.667 0.00 0.00 44.48 4.00
4138 4893 1.067142 TCTGTACCGGCTGCAAAGTAG 60.067 52.381 0.00 0.00 0.00 2.57
4182 4937 3.766691 CGACTACACGGGTGGGGG 61.767 72.222 6.01 0.00 34.19 5.40
4218 4973 4.608032 TGCACGTACCGATGCATT 57.392 50.000 0.00 0.00 46.63 3.56
4285 5040 3.432326 GGTGTAGAGTTGGCCTAATGGAG 60.432 52.174 3.32 0.00 34.57 3.86
4286 5041 2.504175 GGTGTAGAGTTGGCCTAATGGA 59.496 50.000 3.32 0.00 34.57 3.41
4287 5042 2.238646 TGGTGTAGAGTTGGCCTAATGG 59.761 50.000 3.32 0.00 0.00 3.16
4288 5043 3.270877 GTGGTGTAGAGTTGGCCTAATG 58.729 50.000 3.32 0.00 0.00 1.90
4289 5044 2.093658 CGTGGTGTAGAGTTGGCCTAAT 60.094 50.000 3.32 0.00 0.00 1.73
4290 5045 1.274167 CGTGGTGTAGAGTTGGCCTAA 59.726 52.381 3.32 0.00 0.00 2.69
4291 5046 0.892755 CGTGGTGTAGAGTTGGCCTA 59.107 55.000 3.32 0.00 0.00 3.93
4292 5047 0.830444 TCGTGGTGTAGAGTTGGCCT 60.830 55.000 3.32 0.00 0.00 5.19
4293 5048 0.669625 GTCGTGGTGTAGAGTTGGCC 60.670 60.000 0.00 0.00 0.00 5.36
4294 5049 0.669625 GGTCGTGGTGTAGAGTTGGC 60.670 60.000 0.00 0.00 0.00 4.52
4295 5050 0.966920 AGGTCGTGGTGTAGAGTTGG 59.033 55.000 0.00 0.00 0.00 3.77
4296 5051 1.611977 TGAGGTCGTGGTGTAGAGTTG 59.388 52.381 0.00 0.00 0.00 3.16
4297 5052 1.991121 TGAGGTCGTGGTGTAGAGTT 58.009 50.000 0.00 0.00 0.00 3.01
4298 5053 1.991121 TTGAGGTCGTGGTGTAGAGT 58.009 50.000 0.00 0.00 0.00 3.24
4299 5054 2.673833 GTTTGAGGTCGTGGTGTAGAG 58.326 52.381 0.00 0.00 0.00 2.43
4300 5055 1.001048 CGTTTGAGGTCGTGGTGTAGA 60.001 52.381 0.00 0.00 0.00 2.59
4301 5056 1.415374 CGTTTGAGGTCGTGGTGTAG 58.585 55.000 0.00 0.00 0.00 2.74
4302 5057 0.032403 CCGTTTGAGGTCGTGGTGTA 59.968 55.000 0.00 0.00 0.00 2.90
4303 5058 1.227438 CCGTTTGAGGTCGTGGTGT 60.227 57.895 0.00 0.00 0.00 4.16
4304 5059 1.068417 TCCGTTTGAGGTCGTGGTG 59.932 57.895 0.00 0.00 0.00 4.17
4305 5060 1.068585 GTCCGTTTGAGGTCGTGGT 59.931 57.895 0.00 0.00 0.00 4.16
4306 5061 1.666872 GGTCCGTTTGAGGTCGTGG 60.667 63.158 0.00 0.00 0.00 4.94
4307 5062 0.666577 GAGGTCCGTTTGAGGTCGTG 60.667 60.000 0.00 0.00 0.00 4.35
4308 5063 0.826672 AGAGGTCCGTTTGAGGTCGT 60.827 55.000 0.00 0.00 0.00 4.34
4309 5064 0.388649 CAGAGGTCCGTTTGAGGTCG 60.389 60.000 0.00 0.00 0.00 4.79
4310 5065 0.680061 ACAGAGGTCCGTTTGAGGTC 59.320 55.000 0.00 0.00 0.00 3.85
4311 5066 1.129058 AACAGAGGTCCGTTTGAGGT 58.871 50.000 0.00 0.00 0.00 3.85
4312 5067 2.256117 AAACAGAGGTCCGTTTGAGG 57.744 50.000 0.00 0.00 34.16 3.86
4313 5068 5.389516 CGAATAAAACAGAGGTCCGTTTGAG 60.390 44.000 0.00 0.00 35.57 3.02
4314 5069 4.449743 CGAATAAAACAGAGGTCCGTTTGA 59.550 41.667 0.00 0.00 35.57 2.69
4315 5070 4.378046 CCGAATAAAACAGAGGTCCGTTTG 60.378 45.833 0.00 0.00 35.57 2.93
4316 5071 3.749609 CCGAATAAAACAGAGGTCCGTTT 59.250 43.478 0.00 0.00 36.92 3.60
4317 5072 3.007182 TCCGAATAAAACAGAGGTCCGTT 59.993 43.478 0.00 0.00 0.00 4.44
4318 5073 2.564062 TCCGAATAAAACAGAGGTCCGT 59.436 45.455 0.00 0.00 0.00 4.69
4319 5074 3.241067 TCCGAATAAAACAGAGGTCCG 57.759 47.619 0.00 0.00 0.00 4.79
4320 5075 6.072119 ACAAAATCCGAATAAAACAGAGGTCC 60.072 38.462 0.00 0.00 0.00 4.46
4321 5076 6.909909 ACAAAATCCGAATAAAACAGAGGTC 58.090 36.000 0.00 0.00 0.00 3.85
4322 5077 6.072119 GGACAAAATCCGAATAAAACAGAGGT 60.072 38.462 0.00 0.00 37.88 3.85
4323 5078 6.322491 GGACAAAATCCGAATAAAACAGAGG 58.678 40.000 0.00 0.00 37.88 3.69
4337 5092 3.057104 CCTTACCCAAACGGACAAAATCC 60.057 47.826 0.00 0.00 45.20 3.01
4338 5093 3.822167 TCCTTACCCAAACGGACAAAATC 59.178 43.478 0.00 0.00 34.64 2.17
4339 5094 3.834938 TCCTTACCCAAACGGACAAAAT 58.165 40.909 0.00 0.00 34.64 1.82
4340 5095 3.294038 TCCTTACCCAAACGGACAAAA 57.706 42.857 0.00 0.00 34.64 2.44
4341 5096 3.294038 TTCCTTACCCAAACGGACAAA 57.706 42.857 0.00 0.00 34.64 2.83
4342 5097 3.512219 ATTCCTTACCCAAACGGACAA 57.488 42.857 0.00 0.00 34.64 3.18
4343 5098 3.512219 AATTCCTTACCCAAACGGACA 57.488 42.857 0.00 0.00 34.64 4.02
4344 5099 3.943381 CCTAATTCCTTACCCAAACGGAC 59.057 47.826 0.00 0.00 34.64 4.79
4345 5100 3.054213 CCCTAATTCCTTACCCAAACGGA 60.054 47.826 0.00 0.00 34.64 4.69
4346 5101 3.284617 CCCTAATTCCTTACCCAAACGG 58.715 50.000 0.00 0.00 37.81 4.44
4347 5102 3.959293 ACCCTAATTCCTTACCCAAACG 58.041 45.455 0.00 0.00 0.00 3.60
4348 5103 5.047590 CACAACCCTAATTCCTTACCCAAAC 60.048 44.000 0.00 0.00 0.00 2.93
4349 5104 5.081032 CACAACCCTAATTCCTTACCCAAA 58.919 41.667 0.00 0.00 0.00 3.28
4350 5105 4.106663 ACACAACCCTAATTCCTTACCCAA 59.893 41.667 0.00 0.00 0.00 4.12
4351 5106 3.658705 ACACAACCCTAATTCCTTACCCA 59.341 43.478 0.00 0.00 0.00 4.51
4352 5107 4.267536 GACACAACCCTAATTCCTTACCC 58.732 47.826 0.00 0.00 0.00 3.69
4353 5108 4.267536 GGACACAACCCTAATTCCTTACC 58.732 47.826 0.00 0.00 0.00 2.85
4354 5109 3.937079 CGGACACAACCCTAATTCCTTAC 59.063 47.826 0.00 0.00 0.00 2.34
4355 5110 3.054948 CCGGACACAACCCTAATTCCTTA 60.055 47.826 0.00 0.00 0.00 2.69
4356 5111 2.290705 CCGGACACAACCCTAATTCCTT 60.291 50.000 0.00 0.00 0.00 3.36
4357 5112 1.280998 CCGGACACAACCCTAATTCCT 59.719 52.381 0.00 0.00 0.00 3.36
4358 5113 1.279846 TCCGGACACAACCCTAATTCC 59.720 52.381 0.00 0.00 0.00 3.01
4359 5114 2.353323 GTCCGGACACAACCCTAATTC 58.647 52.381 29.75 0.00 0.00 2.17
4360 5115 1.338389 CGTCCGGACACAACCCTAATT 60.338 52.381 32.80 0.00 0.00 1.40
4361 5116 0.248289 CGTCCGGACACAACCCTAAT 59.752 55.000 32.80 0.00 0.00 1.73
4362 5117 1.114722 ACGTCCGGACACAACCCTAA 61.115 55.000 32.80 0.00 0.00 2.69
4363 5118 1.531365 ACGTCCGGACACAACCCTA 60.531 57.895 32.80 0.00 0.00 3.53
4364 5119 2.841044 ACGTCCGGACACAACCCT 60.841 61.111 32.80 4.01 0.00 4.34
4365 5120 2.663852 CACGTCCGGACACAACCC 60.664 66.667 32.80 5.61 0.00 4.11
4366 5121 1.493134 GAACACGTCCGGACACAACC 61.493 60.000 32.80 15.31 0.00 3.77
4367 5122 0.529119 AGAACACGTCCGGACACAAC 60.529 55.000 32.80 18.89 0.00 3.32
4368 5123 0.528901 CAGAACACGTCCGGACACAA 60.529 55.000 32.80 0.00 0.00 3.33
4369 5124 1.066752 CAGAACACGTCCGGACACA 59.933 57.895 32.80 0.00 0.00 3.72
4370 5125 1.663702 CCAGAACACGTCCGGACAC 60.664 63.158 32.80 17.58 0.00 3.67
4371 5126 2.732016 CCAGAACACGTCCGGACA 59.268 61.111 32.80 0.00 0.00 4.02
4372 5127 1.885163 ATCCCAGAACACGTCCGGAC 61.885 60.000 25.28 25.28 29.97 4.79
4373 5128 1.608336 ATCCCAGAACACGTCCGGA 60.608 57.895 0.00 0.00 31.41 5.14
4374 5129 1.447838 CATCCCAGAACACGTCCGG 60.448 63.158 0.00 0.00 0.00 5.14
4375 5130 2.100631 GCATCCCAGAACACGTCCG 61.101 63.158 0.00 0.00 0.00 4.79
4376 5131 2.100631 CGCATCCCAGAACACGTCC 61.101 63.158 0.00 0.00 0.00 4.79
4377 5132 2.100631 CCGCATCCCAGAACACGTC 61.101 63.158 0.00 0.00 0.00 4.34
4378 5133 2.047274 CCGCATCCCAGAACACGT 60.047 61.111 0.00 0.00 0.00 4.49
4379 5134 2.047274 ACCGCATCCCAGAACACG 60.047 61.111 0.00 0.00 0.00 4.49
4380 5135 2.040544 CCACCGCATCCCAGAACAC 61.041 63.158 0.00 0.00 0.00 3.32
4381 5136 2.350895 CCACCGCATCCCAGAACA 59.649 61.111 0.00 0.00 0.00 3.18
4382 5137 3.134127 GCCACCGCATCCCAGAAC 61.134 66.667 0.00 0.00 34.03 3.01
4383 5138 4.424711 GGCCACCGCATCCCAGAA 62.425 66.667 0.00 0.00 36.38 3.02
4414 5169 1.801512 GCAAAAGGAATGCGACCGC 60.802 57.895 7.53 7.53 42.35 5.68
4415 5170 1.154035 GGCAAAAGGAATGCGACCG 60.154 57.895 0.00 0.00 44.75 4.79
4416 5171 1.215382 GGGCAAAAGGAATGCGACC 59.785 57.895 0.00 0.00 44.75 4.79
4417 5172 1.215382 GGGGCAAAAGGAATGCGAC 59.785 57.895 0.00 0.00 44.75 5.19
4418 5173 0.614415 ATGGGGCAAAAGGAATGCGA 60.614 50.000 0.00 0.00 44.75 5.10
4419 5174 0.249955 AATGGGGCAAAAGGAATGCG 59.750 50.000 0.00 0.00 44.75 4.73
4420 5175 1.556451 AGAATGGGGCAAAAGGAATGC 59.444 47.619 0.00 0.00 43.08 3.56
4421 5176 2.568509 ACAGAATGGGGCAAAAGGAATG 59.431 45.455 0.00 0.00 43.62 2.67
4422 5177 2.833943 GACAGAATGGGGCAAAAGGAAT 59.166 45.455 0.00 0.00 43.62 3.01
4423 5178 2.247358 GACAGAATGGGGCAAAAGGAA 58.753 47.619 0.00 0.00 43.62 3.36
4424 5179 1.549950 GGACAGAATGGGGCAAAAGGA 60.550 52.381 0.00 0.00 43.62 3.36
4425 5180 0.897621 GGACAGAATGGGGCAAAAGG 59.102 55.000 0.00 0.00 43.62 3.11
4426 5181 0.527565 CGGACAGAATGGGGCAAAAG 59.472 55.000 0.00 0.00 43.62 2.27
4427 5182 1.531739 GCGGACAGAATGGGGCAAAA 61.532 55.000 0.00 0.00 43.62 2.44
4428 5183 1.976474 GCGGACAGAATGGGGCAAA 60.976 57.895 0.00 0.00 43.62 3.68
4429 5184 2.361104 GCGGACAGAATGGGGCAA 60.361 61.111 0.00 0.00 43.62 4.52
4430 5185 4.776322 CGCGGACAGAATGGGGCA 62.776 66.667 0.00 0.00 43.62 5.36
4431 5186 4.778143 ACGCGGACAGAATGGGGC 62.778 66.667 12.47 0.00 43.62 5.80
4432 5187 0.391927 TAAACGCGGACAGAATGGGG 60.392 55.000 12.47 0.00 43.62 4.96
4433 5188 1.444836 TTAAACGCGGACAGAATGGG 58.555 50.000 12.47 0.00 43.62 4.00
4434 5189 3.425404 CATTTAAACGCGGACAGAATGG 58.575 45.455 12.47 0.00 43.62 3.16
4435 5190 2.845967 GCATTTAAACGCGGACAGAATG 59.154 45.455 12.47 14.43 46.00 2.67
4436 5191 2.159435 GGCATTTAAACGCGGACAGAAT 60.159 45.455 12.47 0.89 0.00 2.40
4437 5192 1.198178 GGCATTTAAACGCGGACAGAA 59.802 47.619 12.47 0.00 0.00 3.02
4438 5193 0.800012 GGCATTTAAACGCGGACAGA 59.200 50.000 12.47 0.00 0.00 3.41
4439 5194 0.519519 TGGCATTTAAACGCGGACAG 59.480 50.000 12.47 0.00 0.00 3.51
4440 5195 0.952280 TTGGCATTTAAACGCGGACA 59.048 45.000 12.47 0.00 0.00 4.02
4441 5196 1.613270 CTTGGCATTTAAACGCGGAC 58.387 50.000 12.47 0.00 0.00 4.79
4442 5197 0.109504 GCTTGGCATTTAAACGCGGA 60.110 50.000 12.47 0.00 0.00 5.54
4443 5198 1.075979 GGCTTGGCATTTAAACGCGG 61.076 55.000 12.47 0.00 0.00 6.46
4444 5199 0.387878 TGGCTTGGCATTTAAACGCG 60.388 50.000 3.53 3.53 0.00 6.01
4445 5200 2.008752 ATGGCTTGGCATTTAAACGC 57.991 45.000 0.00 0.00 0.00 4.84
4446 5201 4.370364 ACTATGGCTTGGCATTTAAACG 57.630 40.909 14.62 0.00 0.00 3.60
4447 5202 5.719173 TGAACTATGGCTTGGCATTTAAAC 58.281 37.500 14.62 5.02 0.00 2.01
4448 5203 5.105392 CCTGAACTATGGCTTGGCATTTAAA 60.105 40.000 14.62 0.00 0.00 1.52
4449 5204 4.402155 CCTGAACTATGGCTTGGCATTTAA 59.598 41.667 14.62 0.00 0.00 1.52
4450 5205 3.953612 CCTGAACTATGGCTTGGCATTTA 59.046 43.478 14.62 0.00 0.00 1.40
4451 5206 2.762327 CCTGAACTATGGCTTGGCATTT 59.238 45.455 14.62 4.58 0.00 2.32
4452 5207 2.381911 CCTGAACTATGGCTTGGCATT 58.618 47.619 14.62 0.00 0.00 3.56
4453 5208 2.025863 GCCTGAACTATGGCTTGGCAT 61.026 52.381 13.93 13.93 45.26 4.40
4454 5209 0.680921 GCCTGAACTATGGCTTGGCA 60.681 55.000 0.00 0.00 45.26 4.92
4455 5210 2.110296 GCCTGAACTATGGCTTGGC 58.890 57.895 0.00 0.00 45.26 4.52
4461 5216 1.524621 CCGCTGGCCTGAACTATGG 60.525 63.158 14.77 0.82 0.00 2.74
4462 5217 0.811616 GACCGCTGGCCTGAACTATG 60.812 60.000 14.77 0.00 0.00 2.23
4463 5218 1.522569 GACCGCTGGCCTGAACTAT 59.477 57.895 14.77 0.00 0.00 2.12
4464 5219 2.656069 GGACCGCTGGCCTGAACTA 61.656 63.158 14.77 0.00 0.00 2.24
4465 5220 4.021925 GGACCGCTGGCCTGAACT 62.022 66.667 14.77 0.00 0.00 3.01
4472 5227 4.778143 ATGAACCGGACCGCTGGC 62.778 66.667 9.46 0.00 44.98 4.85
4473 5228 2.511600 GATGAACCGGACCGCTGG 60.512 66.667 9.46 0.00 46.62 4.85
4474 5229 1.519455 GAGATGAACCGGACCGCTG 60.519 63.158 9.46 0.00 0.00 5.18
4475 5230 2.893398 GAGATGAACCGGACCGCT 59.107 61.111 9.46 0.00 0.00 5.52
4476 5231 2.582498 CGAGATGAACCGGACCGC 60.582 66.667 9.46 0.00 0.00 5.68
4477 5232 2.582498 GCGAGATGAACCGGACCG 60.582 66.667 9.46 6.99 0.00 4.79
4478 5233 2.202892 GGCGAGATGAACCGGACC 60.203 66.667 9.46 0.00 0.00 4.46
4479 5234 2.582498 CGGCGAGATGAACCGGAC 60.582 66.667 9.46 1.77 43.23 4.79
4482 5237 4.812476 TGCCGGCGAGATGAACCG 62.812 66.667 23.90 0.00 46.50 4.44
4483 5238 2.435938 TTGCCGGCGAGATGAACC 60.436 61.111 23.90 0.00 0.00 3.62
4484 5239 1.970917 CTGTTGCCGGCGAGATGAAC 61.971 60.000 23.90 19.29 0.00 3.18
4485 5240 1.741401 CTGTTGCCGGCGAGATGAA 60.741 57.895 23.90 6.19 0.00 2.57
4486 5241 2.125552 CTGTTGCCGGCGAGATGA 60.126 61.111 23.90 0.00 0.00 2.92
4487 5242 2.125552 TCTGTTGCCGGCGAGATG 60.126 61.111 23.90 12.76 0.00 2.90
4488 5243 2.185350 CTCTGTTGCCGGCGAGAT 59.815 61.111 23.90 0.00 0.00 2.75
4489 5244 4.742201 GCTCTGTTGCCGGCGAGA 62.742 66.667 27.04 21.49 0.00 4.04
4506 5261 4.814294 GGACGTGTAGGCCGCTGG 62.814 72.222 0.00 0.00 38.99 4.85
4512 5267 2.585247 GGCGATGGACGTGTAGGC 60.585 66.667 0.00 0.00 44.60 3.93
4513 5268 2.278596 CGGCGATGGACGTGTAGG 60.279 66.667 0.00 0.00 40.74 3.18
4514 5269 2.278596 CCGGCGATGGACGTGTAG 60.279 66.667 9.30 0.00 45.55 2.74
4515 5270 4.501714 GCCGGCGATGGACGTGTA 62.502 66.667 12.58 0.00 45.55 2.90
4518 5273 4.891727 GATGCCGGCGATGGACGT 62.892 66.667 23.90 0.00 45.55 4.34
4519 5274 4.889856 TGATGCCGGCGATGGACG 62.890 66.667 23.90 0.00 46.94 4.79
4520 5275 2.969238 CTGATGCCGGCGATGGAC 60.969 66.667 23.90 9.49 0.00 4.02
4521 5276 4.916293 GCTGATGCCGGCGATGGA 62.916 66.667 23.90 3.26 34.60 3.41
4539 5294 3.576356 CTGTATTGCCGGCCGCTG 61.576 66.667 26.77 8.64 38.78 5.18
4548 5303 1.176527 TTGAAGGCTGGCTGTATTGC 58.823 50.000 3.84 0.00 0.00 3.56
4549 5304 3.940209 TTTTGAAGGCTGGCTGTATTG 57.060 42.857 3.84 0.00 0.00 1.90
4550 5305 4.088634 TCATTTTGAAGGCTGGCTGTATT 58.911 39.130 3.84 0.00 0.00 1.89
4551 5306 3.700538 TCATTTTGAAGGCTGGCTGTAT 58.299 40.909 3.84 0.00 0.00 2.29
4552 5307 3.153369 TCATTTTGAAGGCTGGCTGTA 57.847 42.857 3.84 0.00 0.00 2.74
4553 5308 1.999648 TCATTTTGAAGGCTGGCTGT 58.000 45.000 3.84 0.00 0.00 4.40
4554 5309 3.604875 ATTCATTTTGAAGGCTGGCTG 57.395 42.857 3.84 0.00 40.05 4.85
4555 5310 4.347607 ACTATTCATTTTGAAGGCTGGCT 58.652 39.130 0.00 0.00 40.05 4.75
4556 5311 4.725790 ACTATTCATTTTGAAGGCTGGC 57.274 40.909 0.00 0.00 40.05 4.85
4557 5312 6.029346 ACAACTATTCATTTTGAAGGCTGG 57.971 37.500 0.00 0.00 40.05 4.85
4558 5313 6.071728 AGGACAACTATTCATTTTGAAGGCTG 60.072 38.462 0.00 0.00 40.05 4.85
4559 5314 6.012745 AGGACAACTATTCATTTTGAAGGCT 58.987 36.000 0.00 0.00 40.05 4.58
4560 5315 6.272822 AGGACAACTATTCATTTTGAAGGC 57.727 37.500 0.00 0.00 40.05 4.35
4561 5316 6.546395 CGAGGACAACTATTCATTTTGAAGG 58.454 40.000 0.00 0.00 40.05 3.46
4562 5317 6.024049 GCGAGGACAACTATTCATTTTGAAG 58.976 40.000 0.00 0.00 40.05 3.02
4563 5318 5.106317 GGCGAGGACAACTATTCATTTTGAA 60.106 40.000 0.00 0.00 41.09 2.69
4564 5319 4.394920 GGCGAGGACAACTATTCATTTTGA 59.605 41.667 0.00 0.00 0.00 2.69
4565 5320 4.662145 GGCGAGGACAACTATTCATTTTG 58.338 43.478 0.00 0.00 0.00 2.44
4566 5321 3.374058 CGGCGAGGACAACTATTCATTTT 59.626 43.478 0.00 0.00 0.00 1.82
4567 5322 2.936498 CGGCGAGGACAACTATTCATTT 59.064 45.455 0.00 0.00 0.00 2.32
4568 5323 2.550978 CGGCGAGGACAACTATTCATT 58.449 47.619 0.00 0.00 0.00 2.57
4569 5324 1.202533 CCGGCGAGGACAACTATTCAT 60.203 52.381 9.30 0.00 45.00 2.57
4570 5325 0.174845 CCGGCGAGGACAACTATTCA 59.825 55.000 9.30 0.00 45.00 2.57
4571 5326 1.152383 GCCGGCGAGGACAACTATTC 61.152 60.000 12.58 0.00 45.00 1.75
4572 5327 1.153429 GCCGGCGAGGACAACTATT 60.153 57.895 12.58 0.00 45.00 1.73
4573 5328 1.895020 TTGCCGGCGAGGACAACTAT 61.895 55.000 23.90 0.00 45.00 2.12
4574 5329 2.575893 TTGCCGGCGAGGACAACTA 61.576 57.895 23.90 0.00 45.00 2.24
4575 5330 3.936203 TTGCCGGCGAGGACAACT 61.936 61.111 23.90 0.00 45.00 3.16
4576 5331 3.723348 GTTGCCGGCGAGGACAAC 61.723 66.667 23.90 15.63 43.89 3.32
4577 5332 4.243008 TGTTGCCGGCGAGGACAA 62.243 61.111 23.90 6.19 45.00 3.18
4578 5333 4.980805 GTGTTGCCGGCGAGGACA 62.981 66.667 23.90 19.95 45.00 4.02
4579 5334 4.980805 TGTGTTGCCGGCGAGGAC 62.981 66.667 23.90 19.29 45.00 3.85
4580 5335 4.680237 CTGTGTTGCCGGCGAGGA 62.680 66.667 23.90 6.59 45.00 3.71
4589 5344 3.050275 GGAGGTCGGCTGTGTTGC 61.050 66.667 0.00 0.00 0.00 4.17
4590 5345 1.669115 CTGGAGGTCGGCTGTGTTG 60.669 63.158 0.00 0.00 0.00 3.33
4591 5346 1.407656 TTCTGGAGGTCGGCTGTGTT 61.408 55.000 0.00 0.00 0.00 3.32
4592 5347 1.194781 ATTCTGGAGGTCGGCTGTGT 61.195 55.000 0.00 0.00 0.00 3.72
4593 5348 0.742281 CATTCTGGAGGTCGGCTGTG 60.742 60.000 0.00 0.00 0.00 3.66
4594 5349 0.904865 TCATTCTGGAGGTCGGCTGT 60.905 55.000 0.00 0.00 0.00 4.40
4595 5350 0.250234 TTCATTCTGGAGGTCGGCTG 59.750 55.000 0.00 0.00 0.00 4.85
4596 5351 1.134280 CATTCATTCTGGAGGTCGGCT 60.134 52.381 0.00 0.00 0.00 5.52
4597 5352 1.303309 CATTCATTCTGGAGGTCGGC 58.697 55.000 0.00 0.00 0.00 5.54
4598 5353 2.698855 ACATTCATTCTGGAGGTCGG 57.301 50.000 0.00 0.00 0.00 4.79
4599 5354 5.182001 AGAAAAACATTCATTCTGGAGGTCG 59.818 40.000 0.00 0.00 32.42 4.79
4600 5355 6.581171 AGAAAAACATTCATTCTGGAGGTC 57.419 37.500 0.00 0.00 32.42 3.85
4601 5356 5.182001 CGAGAAAAACATTCATTCTGGAGGT 59.818 40.000 0.00 0.00 33.73 3.85
4602 5357 5.634896 CGAGAAAAACATTCATTCTGGAGG 58.365 41.667 0.00 0.00 33.73 4.30
4603 5358 5.091431 GCGAGAAAAACATTCATTCTGGAG 58.909 41.667 0.00 0.00 33.73 3.86
4604 5359 4.082787 GGCGAGAAAAACATTCATTCTGGA 60.083 41.667 0.00 0.00 33.73 3.86
4605 5360 4.168760 GGCGAGAAAAACATTCATTCTGG 58.831 43.478 0.00 0.00 33.73 3.86
4606 5361 3.848019 CGGCGAGAAAAACATTCATTCTG 59.152 43.478 0.00 0.00 33.73 3.02
4607 5362 3.751175 TCGGCGAGAAAAACATTCATTCT 59.249 39.130 4.99 0.00 36.17 2.40
4608 5363 4.078363 TCGGCGAGAAAAACATTCATTC 57.922 40.909 4.99 0.00 0.00 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.