Multiple sequence alignment - TraesCS4A01G118300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G118300 chr4A 100.000 3071 0 0 1 3071 144838872 144841942 0.000000e+00 5672.0
1 TraesCS4A01G118300 chr4A 92.409 303 21 2 2431 2731 617657131 617657433 6.080000e-117 431.0
2 TraesCS4A01G118300 chr4A 84.298 242 24 7 88 316 115882045 115882285 1.110000e-54 224.0
3 TraesCS4A01G118300 chr4B 95.891 1582 51 8 851 2427 406041086 406039514 0.000000e+00 2549.0
4 TraesCS4A01G118300 chr4B 93.312 314 18 3 2421 2731 476260644 476260331 7.760000e-126 460.0
5 TraesCS4A01G118300 chr4B 87.853 354 11 12 2733 3071 406039512 406039176 1.340000e-103 387.0
6 TraesCS4A01G118300 chr4B 77.076 602 84 30 183 754 467719474 467718897 6.440000e-77 298.0
7 TraesCS4A01G118300 chr4D 94.997 1599 49 14 838 2428 325892114 325890539 0.000000e+00 2481.0
8 TraesCS4A01G118300 chr4D 92.484 306 20 3 2428 2730 56741430 56741125 4.700000e-118 435.0
9 TraesCS4A01G118300 chr4D 77.883 737 98 33 37 725 9481789 9482508 6.170000e-107 398.0
10 TraesCS4A01G118300 chr4D 86.158 354 15 8 2730 3071 325890541 325890210 4.870000e-93 351.0
11 TraesCS4A01G118300 chr7D 80.620 774 93 28 11 754 82291255 82292001 2.080000e-151 545.0
12 TraesCS4A01G118300 chr7D 90.441 136 13 0 1 136 507416792 507416927 2.430000e-41 180.0
13 TraesCS4A01G118300 chr2A 93.069 303 19 2 2431 2731 777014419 777014721 2.810000e-120 442.0
14 TraesCS4A01G118300 chr2A 92.739 303 20 2 2431 2731 733160015 733160317 1.310000e-118 436.0
15 TraesCS4A01G118300 chr6A 92.739 303 20 2 2431 2731 603359997 603359695 1.310000e-118 436.0
16 TraesCS4A01G118300 chr7B 91.935 310 22 3 2426 2732 10968168 10968477 6.080000e-117 431.0
17 TraesCS4A01G118300 chr7B 91.054 313 25 3 2425 2734 648921966 648921654 1.320000e-113 420.0
18 TraesCS4A01G118300 chr7A 92.079 303 22 2 2431 2731 89977542 89977844 2.830000e-115 425.0
19 TraesCS4A01G118300 chr7A 79.426 627 78 25 1 595 83908326 83908933 2.220000e-106 396.0
20 TraesCS4A01G118300 chr7A 91.667 48 2 2 803 849 100554015 100554061 7.110000e-07 65.8
21 TraesCS4A01G118300 chr3B 76.903 775 113 38 1 742 621934611 621935352 2.230000e-101 379.0
22 TraesCS4A01G118300 chr3B 87.500 136 17 0 1 136 807159071 807159206 1.140000e-34 158.0
23 TraesCS4A01G118300 chr2D 79.872 313 38 10 37 337 132069421 132069122 4.010000e-49 206.0
24 TraesCS4A01G118300 chr5B 89.706 136 14 0 1 136 60084789 60084654 1.130000e-39 174.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G118300 chr4A 144838872 144841942 3070 False 5672 5672 100.0000 1 3071 1 chr4A.!!$F2 3070
1 TraesCS4A01G118300 chr4B 406039176 406041086 1910 True 1468 2549 91.8720 851 3071 2 chr4B.!!$R3 2220
2 TraesCS4A01G118300 chr4B 467718897 467719474 577 True 298 298 77.0760 183 754 1 chr4B.!!$R1 571
3 TraesCS4A01G118300 chr4D 325890210 325892114 1904 True 1416 2481 90.5775 838 3071 2 chr4D.!!$R2 2233
4 TraesCS4A01G118300 chr4D 9481789 9482508 719 False 398 398 77.8830 37 725 1 chr4D.!!$F1 688
5 TraesCS4A01G118300 chr7D 82291255 82292001 746 False 545 545 80.6200 11 754 1 chr7D.!!$F1 743
6 TraesCS4A01G118300 chr7A 83908326 83908933 607 False 396 396 79.4260 1 595 1 chr7A.!!$F1 594
7 TraesCS4A01G118300 chr3B 621934611 621935352 741 False 379 379 76.9030 1 742 1 chr3B.!!$F1 741

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
738 781 0.033504 ATGCCGTTATCCTACTGCCG 59.966 55.0 0.0 0.0 0.0 5.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2521 2584 0.038166 TCTGGGCCATCAAACACTCC 59.962 55.0 6.72 0.0 0.0 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.327303 TCCACACCAGGATGTTTTGC 58.673 50.000 0.00 0.00 31.23 3.68
63 64 1.602377 CGTTTCAGAAACCGCTTCCTT 59.398 47.619 18.58 0.00 38.14 3.36
77 78 0.035598 TTCCTTGTCATCGCCCGAAA 59.964 50.000 0.00 0.00 0.00 3.46
122 123 1.152963 AAACAAGGAGTGTGCCGCT 60.153 52.632 0.00 0.00 40.60 5.52
177 196 4.766404 AGTTAAACTAGTTGTGCCATGC 57.234 40.909 9.34 0.00 0.00 4.06
179 198 5.556915 AGTTAAACTAGTTGTGCCATGCTA 58.443 37.500 9.34 0.00 0.00 3.49
201 220 9.767228 TGCTAAAGTACTCAGTTTTGTGTTATA 57.233 29.630 0.00 0.00 33.43 0.98
264 285 1.851021 TTGGGTGCGTCGATTTGCTG 61.851 55.000 0.00 0.00 0.00 4.41
281 302 5.675684 TTGCTGTCTATAATGTGTGAGGA 57.324 39.130 0.00 0.00 0.00 3.71
320 342 4.808558 TCCAAACAATATTTGCTGCTGTC 58.191 39.130 0.00 0.00 0.00 3.51
401 429 7.672983 TCTTGTAAAAATAGTGAGAAGCCTG 57.327 36.000 0.00 0.00 0.00 4.85
406 434 1.617018 ATAGTGAGAAGCCTGCCGCA 61.617 55.000 0.00 0.00 41.38 5.69
435 464 0.517316 GCGGTAGGTTTTCACAGCTG 59.483 55.000 13.48 13.48 33.74 4.24
471 512 1.270947 TGAAAACCTACCGCACGGAAT 60.271 47.619 17.40 0.00 38.96 3.01
477 518 1.380785 TACCGCACGGAATCCTCCT 60.381 57.895 17.40 0.00 39.93 3.69
478 519 0.974010 TACCGCACGGAATCCTCCTT 60.974 55.000 17.40 0.00 39.93 3.36
503 545 2.369860 TCAGTCACAGAATGCTTCCACT 59.630 45.455 0.00 0.00 42.53 4.00
505 547 2.636893 AGTCACAGAATGCTTCCACTCT 59.363 45.455 0.00 0.00 42.53 3.24
513 555 0.111061 TGCTTCCACTCTTGGCACAT 59.889 50.000 0.00 0.00 43.56 3.21
518 560 2.481441 TCCACTCTTGGCACATCCTAT 58.519 47.619 0.00 0.00 43.56 2.57
564 606 3.880490 TGTGAAAATCTACCGCACAAACT 59.120 39.130 0.00 0.00 36.63 2.66
570 612 0.665835 CTACCGCACAAACTTTGCCA 59.334 50.000 1.14 0.00 36.57 4.92
595 638 2.158957 TCTGTCACAGAAAGTTTCGCCT 60.159 45.455 4.55 0.00 37.57 5.52
598 641 0.662619 CACAGAAAGTTTCGCCTGCA 59.337 50.000 9.91 0.00 34.02 4.41
619 662 2.975536 GTGCGCCACACCCTACTA 59.024 61.111 4.18 0.00 44.02 1.82
626 669 0.252558 CCACACCCTACTACCACCCT 60.253 60.000 0.00 0.00 0.00 4.34
658 701 1.614226 TTTAGCCACCCTACCGCCT 60.614 57.895 0.00 0.00 0.00 5.52
666 709 0.986550 ACCCTACCGCCTTATGCCTT 60.987 55.000 0.00 0.00 36.24 4.35
677 720 1.276140 TTATGCCTTGGCGGTAGGGT 61.276 55.000 7.18 0.00 33.19 4.34
695 738 2.163211 GGGTAGTTAGGACACGTCAGAC 59.837 54.545 0.00 0.00 0.00 3.51
696 739 2.163211 GGTAGTTAGGACACGTCAGACC 59.837 54.545 0.00 0.00 0.00 3.85
697 740 1.254954 AGTTAGGACACGTCAGACCC 58.745 55.000 0.00 0.00 0.00 4.46
698 741 0.963962 GTTAGGACACGTCAGACCCA 59.036 55.000 0.00 0.00 0.00 4.51
699 742 1.549170 GTTAGGACACGTCAGACCCAT 59.451 52.381 0.00 0.00 0.00 4.00
700 743 2.756760 GTTAGGACACGTCAGACCCATA 59.243 50.000 0.00 0.00 0.00 2.74
701 744 1.933021 AGGACACGTCAGACCCATAA 58.067 50.000 0.00 0.00 0.00 1.90
702 745 2.253610 AGGACACGTCAGACCCATAAA 58.746 47.619 0.00 0.00 0.00 1.40
703 746 2.028385 AGGACACGTCAGACCCATAAAC 60.028 50.000 0.00 0.00 0.00 2.01
704 747 2.289195 GGACACGTCAGACCCATAAACA 60.289 50.000 0.00 0.00 0.00 2.83
705 748 2.993899 GACACGTCAGACCCATAAACAG 59.006 50.000 0.00 0.00 0.00 3.16
706 749 1.732259 CACGTCAGACCCATAAACAGC 59.268 52.381 0.00 0.00 0.00 4.40
707 750 0.999406 CGTCAGACCCATAAACAGCG 59.001 55.000 0.00 0.00 0.00 5.18
708 751 1.369625 GTCAGACCCATAAACAGCGG 58.630 55.000 0.00 0.00 0.00 5.52
709 752 0.251916 TCAGACCCATAAACAGCGGG 59.748 55.000 0.00 0.00 46.22 6.13
713 756 2.477880 CCCATAAACAGCGGGTGAC 58.522 57.895 14.98 0.00 35.03 3.67
715 758 1.366111 CCATAAACAGCGGGTGACGG 61.366 60.000 14.98 2.84 44.51 4.79
716 759 0.390603 CATAAACAGCGGGTGACGGA 60.391 55.000 14.98 0.00 44.51 4.69
717 760 0.108329 ATAAACAGCGGGTGACGGAG 60.108 55.000 14.98 0.00 44.51 4.63
718 761 2.162338 TAAACAGCGGGTGACGGAGG 62.162 60.000 14.98 0.00 44.51 4.30
719 762 4.988716 ACAGCGGGTGACGGAGGA 62.989 66.667 14.98 0.00 44.51 3.71
720 763 3.461773 CAGCGGGTGACGGAGGAT 61.462 66.667 0.00 0.00 44.51 3.24
721 764 3.461773 AGCGGGTGACGGAGGATG 61.462 66.667 0.00 0.00 44.51 3.51
723 766 4.530857 CGGGTGACGGAGGATGCC 62.531 72.222 0.00 0.00 39.42 4.40
730 773 4.675404 CGGAGGATGCCGTTATCC 57.325 61.111 7.00 7.00 46.07 2.59
736 779 1.797025 GGATGCCGTTATCCTACTGC 58.203 55.000 7.68 0.00 42.73 4.40
737 780 1.608283 GGATGCCGTTATCCTACTGCC 60.608 57.143 7.68 0.00 42.73 4.85
738 781 0.033504 ATGCCGTTATCCTACTGCCG 59.966 55.000 0.00 0.00 0.00 5.69
739 782 1.300697 GCCGTTATCCTACTGCCGG 60.301 63.158 0.00 0.00 38.45 6.13
740 783 2.024590 GCCGTTATCCTACTGCCGGT 62.025 60.000 1.90 0.00 37.76 5.28
741 784 0.249322 CCGTTATCCTACTGCCGGTG 60.249 60.000 1.90 0.00 0.00 4.94
742 785 0.742505 CGTTATCCTACTGCCGGTGA 59.257 55.000 1.90 0.00 0.00 4.02
743 786 1.535437 CGTTATCCTACTGCCGGTGAC 60.535 57.143 1.90 0.00 0.00 3.67
744 787 1.755380 GTTATCCTACTGCCGGTGACT 59.245 52.381 1.90 0.00 0.00 3.41
745 788 2.954318 GTTATCCTACTGCCGGTGACTA 59.046 50.000 1.90 0.00 0.00 2.59
746 789 1.400737 ATCCTACTGCCGGTGACTAC 58.599 55.000 1.90 0.00 0.00 2.73
747 790 1.028330 TCCTACTGCCGGTGACTACG 61.028 60.000 1.90 0.00 0.00 3.51
753 796 3.133464 CCGGTGACTACGGCGGTA 61.133 66.667 13.24 3.91 45.34 4.02
754 797 2.699768 CCGGTGACTACGGCGGTAA 61.700 63.158 13.24 0.00 45.34 2.85
755 798 1.226491 CGGTGACTACGGCGGTAAG 60.226 63.158 13.24 8.29 0.00 2.34
756 799 1.647545 CGGTGACTACGGCGGTAAGA 61.648 60.000 13.24 0.00 0.00 2.10
757 800 0.527565 GGTGACTACGGCGGTAAGAA 59.472 55.000 13.24 0.00 0.00 2.52
758 801 1.067635 GGTGACTACGGCGGTAAGAAA 60.068 52.381 13.24 0.00 0.00 2.52
759 802 2.610232 GGTGACTACGGCGGTAAGAAAA 60.610 50.000 13.24 0.00 0.00 2.29
760 803 3.059166 GTGACTACGGCGGTAAGAAAAA 58.941 45.455 13.24 0.00 0.00 1.94
761 804 3.681417 GTGACTACGGCGGTAAGAAAAAT 59.319 43.478 13.24 0.00 0.00 1.82
762 805 3.680937 TGACTACGGCGGTAAGAAAAATG 59.319 43.478 13.24 0.00 0.00 2.32
763 806 3.928375 GACTACGGCGGTAAGAAAAATGA 59.072 43.478 13.24 0.00 0.00 2.57
764 807 4.510571 ACTACGGCGGTAAGAAAAATGAT 58.489 39.130 13.24 0.00 0.00 2.45
765 808 4.569564 ACTACGGCGGTAAGAAAAATGATC 59.430 41.667 13.24 0.00 0.00 2.92
766 809 3.340034 ACGGCGGTAAGAAAAATGATCA 58.660 40.909 13.24 0.00 0.00 2.92
767 810 3.374058 ACGGCGGTAAGAAAAATGATCAG 59.626 43.478 13.24 0.00 0.00 2.90
768 811 3.621268 CGGCGGTAAGAAAAATGATCAGA 59.379 43.478 0.09 0.00 0.00 3.27
769 812 4.273480 CGGCGGTAAGAAAAATGATCAGAT 59.727 41.667 0.09 0.00 0.00 2.90
770 813 5.220854 CGGCGGTAAGAAAAATGATCAGATT 60.221 40.000 0.09 0.00 0.00 2.40
771 814 6.202226 GGCGGTAAGAAAAATGATCAGATTC 58.798 40.000 0.09 5.74 0.00 2.52
772 815 6.202226 GCGGTAAGAAAAATGATCAGATTCC 58.798 40.000 0.09 0.00 0.00 3.01
773 816 6.422223 CGGTAAGAAAAATGATCAGATTCCG 58.578 40.000 0.09 4.12 0.00 4.30
774 817 6.257849 CGGTAAGAAAAATGATCAGATTCCGA 59.742 38.462 0.09 0.00 33.88 4.55
775 818 7.201609 CGGTAAGAAAAATGATCAGATTCCGAA 60.202 37.037 0.09 0.00 33.88 4.30
776 819 8.125448 GGTAAGAAAAATGATCAGATTCCGAAG 58.875 37.037 0.09 0.00 0.00 3.79
777 820 7.693969 AAGAAAAATGATCAGATTCCGAAGT 57.306 32.000 0.09 0.00 0.00 3.01
778 821 7.693969 AGAAAAATGATCAGATTCCGAAGTT 57.306 32.000 0.09 0.00 0.00 2.66
779 822 8.115490 AGAAAAATGATCAGATTCCGAAGTTT 57.885 30.769 0.09 0.00 0.00 2.66
780 823 8.579863 AGAAAAATGATCAGATTCCGAAGTTTT 58.420 29.630 0.09 0.00 0.00 2.43
781 824 9.196552 GAAAAATGATCAGATTCCGAAGTTTTT 57.803 29.630 0.09 5.28 0.00 1.94
802 845 6.712241 TTTTCAGACGAGATCAGATTGTTC 57.288 37.500 0.00 0.00 0.00 3.18
803 846 5.391312 TTCAGACGAGATCAGATTGTTCA 57.609 39.130 0.00 0.00 0.00 3.18
804 847 5.391312 TCAGACGAGATCAGATTGTTCAA 57.609 39.130 0.00 0.00 0.00 2.69
805 848 5.783111 TCAGACGAGATCAGATTGTTCAAA 58.217 37.500 0.00 0.00 0.00 2.69
806 849 6.223120 TCAGACGAGATCAGATTGTTCAAAA 58.777 36.000 0.00 0.00 0.00 2.44
807 850 6.146184 TCAGACGAGATCAGATTGTTCAAAAC 59.854 38.462 0.00 0.00 0.00 2.43
808 851 6.146837 CAGACGAGATCAGATTGTTCAAAACT 59.853 38.462 0.00 0.00 0.00 2.66
809 852 6.367422 AGACGAGATCAGATTGTTCAAAACTC 59.633 38.462 0.00 0.00 0.00 3.01
810 853 5.991606 ACGAGATCAGATTGTTCAAAACTCA 59.008 36.000 0.00 0.00 0.00 3.41
811 854 6.483307 ACGAGATCAGATTGTTCAAAACTCAA 59.517 34.615 0.00 0.00 0.00 3.02
812 855 7.012327 ACGAGATCAGATTGTTCAAAACTCAAA 59.988 33.333 0.00 0.00 0.00 2.69
813 856 7.322222 CGAGATCAGATTGTTCAAAACTCAAAC 59.678 37.037 0.00 0.00 0.00 2.93
814 857 7.999679 AGATCAGATTGTTCAAAACTCAAACA 58.000 30.769 0.00 0.00 0.00 2.83
815 858 8.469200 AGATCAGATTGTTCAAAACTCAAACAA 58.531 29.630 0.00 2.76 44.36 2.83
816 859 9.086336 GATCAGATTGTTCAAAACTCAAACAAA 57.914 29.630 4.26 0.00 43.71 2.83
817 860 8.824159 TCAGATTGTTCAAAACTCAAACAAAA 57.176 26.923 4.26 0.00 43.71 2.44
818 861 8.924691 TCAGATTGTTCAAAACTCAAACAAAAG 58.075 29.630 4.26 0.00 43.71 2.27
819 862 8.170553 CAGATTGTTCAAAACTCAAACAAAAGG 58.829 33.333 4.26 0.00 43.71 3.11
820 863 6.793492 TTGTTCAAAACTCAAACAAAAGGG 57.207 33.333 0.00 0.00 39.28 3.95
821 864 5.859495 TGTTCAAAACTCAAACAAAAGGGT 58.141 33.333 0.00 0.00 30.39 4.34
822 865 5.929415 TGTTCAAAACTCAAACAAAAGGGTC 59.071 36.000 0.00 0.00 30.39 4.46
823 866 5.730296 TCAAAACTCAAACAAAAGGGTCA 57.270 34.783 0.00 0.00 0.00 4.02
824 867 6.102897 TCAAAACTCAAACAAAAGGGTCAA 57.897 33.333 0.00 0.00 0.00 3.18
825 868 6.525629 TCAAAACTCAAACAAAAGGGTCAAA 58.474 32.000 0.00 0.00 0.00 2.69
826 869 6.992715 TCAAAACTCAAACAAAAGGGTCAAAA 59.007 30.769 0.00 0.00 0.00 2.44
827 870 6.795098 AAACTCAAACAAAAGGGTCAAAAC 57.205 33.333 0.00 0.00 0.00 2.43
828 871 5.476091 ACTCAAACAAAAGGGTCAAAACA 57.524 34.783 0.00 0.00 0.00 2.83
829 872 5.478407 ACTCAAACAAAAGGGTCAAAACAG 58.522 37.500 0.00 0.00 0.00 3.16
830 873 4.826556 TCAAACAAAAGGGTCAAAACAGG 58.173 39.130 0.00 0.00 0.00 4.00
831 874 4.528596 TCAAACAAAAGGGTCAAAACAGGA 59.471 37.500 0.00 0.00 0.00 3.86
832 875 5.012148 TCAAACAAAAGGGTCAAAACAGGAA 59.988 36.000 0.00 0.00 0.00 3.36
833 876 5.491323 AACAAAAGGGTCAAAACAGGAAA 57.509 34.783 0.00 0.00 0.00 3.13
834 877 5.692115 ACAAAAGGGTCAAAACAGGAAAT 57.308 34.783 0.00 0.00 0.00 2.17
835 878 6.061022 ACAAAAGGGTCAAAACAGGAAATT 57.939 33.333 0.00 0.00 0.00 1.82
836 879 6.480763 ACAAAAGGGTCAAAACAGGAAATTT 58.519 32.000 0.00 0.00 0.00 1.82
837 880 6.945435 ACAAAAGGGTCAAAACAGGAAATTTT 59.055 30.769 0.00 0.00 0.00 1.82
838 881 7.094420 ACAAAAGGGTCAAAACAGGAAATTTTG 60.094 33.333 4.24 4.24 44.74 2.44
839 882 4.450976 AGGGTCAAAACAGGAAATTTTGC 58.549 39.130 5.52 0.00 43.62 3.68
840 883 3.563808 GGGTCAAAACAGGAAATTTTGCC 59.436 43.478 5.52 9.16 43.62 4.52
841 884 4.195416 GGTCAAAACAGGAAATTTTGCCA 58.805 39.130 13.77 0.00 43.62 4.92
871 914 1.143838 CATCCATCGCCGTCTCCAA 59.856 57.895 0.00 0.00 0.00 3.53
878 921 1.299165 CGCCGTCTCCAACTATCGG 60.299 63.158 0.00 0.00 43.37 4.18
879 922 1.067582 GCCGTCTCCAACTATCGGG 59.932 63.158 0.00 0.00 41.24 5.14
880 923 1.673808 GCCGTCTCCAACTATCGGGT 61.674 60.000 0.00 0.00 41.24 5.28
881 924 0.822164 CCGTCTCCAACTATCGGGTT 59.178 55.000 0.00 0.00 37.92 4.11
882 925 2.026641 CCGTCTCCAACTATCGGGTTA 58.973 52.381 0.00 0.00 37.92 2.85
883 926 2.626743 CCGTCTCCAACTATCGGGTTAT 59.373 50.000 0.00 0.00 37.92 1.89
1144 1198 3.661648 GCCCCATCCACCACCTGT 61.662 66.667 0.00 0.00 0.00 4.00
1164 1218 2.754658 TTCTCGTCCTCCTCGGCC 60.755 66.667 0.00 0.00 0.00 6.13
1329 1383 3.744719 CTCGACCCCGACAGCGAA 61.745 66.667 0.00 0.00 40.30 4.70
1459 1513 2.433145 CGCGGCTCAAGCTTCTCA 60.433 61.111 0.00 0.00 41.70 3.27
1512 1566 3.992641 TCCCTCTCGACTGGGGCA 61.993 66.667 15.64 0.00 43.51 5.36
1585 1639 3.203412 CCTCCTCCTCGTCGTCCG 61.203 72.222 0.00 0.00 38.13 4.79
2078 2135 4.624452 CGTCTTCTCCCGGTAAAAGTAAAG 59.376 45.833 0.00 0.00 0.00 1.85
2094 2151 6.809630 AAGTAAAGAAGCACTCCAGAAATC 57.190 37.500 0.00 0.00 0.00 2.17
2099 2156 0.846427 AGCACTCCAGAAATCCCCCA 60.846 55.000 0.00 0.00 0.00 4.96
2137 2194 5.506317 GCAGAGAGCAAAACAAGAGCTTAAA 60.506 40.000 0.00 0.00 44.79 1.52
2169 2226 3.150767 TGCTACTGTTGCCGGTTAATTT 58.849 40.909 11.51 0.00 0.00 1.82
2171 2228 4.760715 TGCTACTGTTGCCGGTTAATTTAA 59.239 37.500 11.51 0.00 0.00 1.52
2244 2304 5.003121 GTCTTTTGTAAGTTGTTGCGTGTTC 59.997 40.000 0.00 0.00 32.98 3.18
2336 2397 2.825532 TCACATCAACTCGTCCATCAGA 59.174 45.455 0.00 0.00 0.00 3.27
2417 2480 1.210155 GTGTGCCCATGTCTTTCGC 59.790 57.895 0.00 0.00 0.00 4.70
2425 2488 3.535561 CCCATGTCTTTCGCTCAAGTAT 58.464 45.455 0.00 0.00 0.00 2.12
2426 2489 4.693283 CCCATGTCTTTCGCTCAAGTATA 58.307 43.478 0.00 0.00 0.00 1.47
2427 2490 5.300752 CCCATGTCTTTCGCTCAAGTATAT 58.699 41.667 0.00 0.00 0.00 0.86
2428 2491 5.178252 CCCATGTCTTTCGCTCAAGTATATG 59.822 44.000 0.00 0.00 0.00 1.78
2429 2492 5.178252 CCATGTCTTTCGCTCAAGTATATGG 59.822 44.000 0.00 0.00 0.00 2.74
2430 2493 4.119862 TGTCTTTCGCTCAAGTATATGGC 58.880 43.478 0.00 0.00 0.00 4.40
2431 2494 3.495001 GTCTTTCGCTCAAGTATATGGCC 59.505 47.826 0.00 0.00 0.00 5.36
2432 2495 3.388024 TCTTTCGCTCAAGTATATGGCCT 59.612 43.478 3.32 0.00 0.00 5.19
2433 2496 3.386768 TTCGCTCAAGTATATGGCCTC 57.613 47.619 3.32 0.00 0.00 4.70
2434 2497 2.598565 TCGCTCAAGTATATGGCCTCT 58.401 47.619 3.32 0.00 0.00 3.69
2435 2498 2.965831 TCGCTCAAGTATATGGCCTCTT 59.034 45.455 3.32 0.00 0.00 2.85
2436 2499 3.388024 TCGCTCAAGTATATGGCCTCTTT 59.612 43.478 3.32 0.00 0.00 2.52
2437 2500 3.496130 CGCTCAAGTATATGGCCTCTTTG 59.504 47.826 3.32 0.55 0.00 2.77
2438 2501 4.708177 GCTCAAGTATATGGCCTCTTTGA 58.292 43.478 3.32 5.05 0.00 2.69
2439 2502 5.312079 GCTCAAGTATATGGCCTCTTTGAT 58.688 41.667 3.32 0.00 0.00 2.57
2440 2503 5.767168 GCTCAAGTATATGGCCTCTTTGATT 59.233 40.000 3.32 0.00 0.00 2.57
2441 2504 6.072783 GCTCAAGTATATGGCCTCTTTGATTC 60.073 42.308 3.32 0.00 0.00 2.52
2442 2505 5.991606 TCAAGTATATGGCCTCTTTGATTCG 59.008 40.000 3.32 0.00 0.00 3.34
2443 2506 4.319177 AGTATATGGCCTCTTTGATTCGC 58.681 43.478 3.32 0.00 0.00 4.70
2444 2507 2.708216 TATGGCCTCTTTGATTCGCA 57.292 45.000 3.32 0.00 0.00 5.10
2445 2508 1.386533 ATGGCCTCTTTGATTCGCAG 58.613 50.000 3.32 0.00 0.00 5.18
2446 2509 0.677731 TGGCCTCTTTGATTCGCAGG 60.678 55.000 3.32 0.00 0.00 4.85
2447 2510 0.392998 GGCCTCTTTGATTCGCAGGA 60.393 55.000 0.00 0.00 0.00 3.86
2448 2511 1.673168 GCCTCTTTGATTCGCAGGAT 58.327 50.000 0.00 0.00 0.00 3.24
2449 2512 2.019984 GCCTCTTTGATTCGCAGGATT 58.980 47.619 0.00 0.00 0.00 3.01
2450 2513 2.424956 GCCTCTTTGATTCGCAGGATTT 59.575 45.455 0.00 0.00 0.00 2.17
2451 2514 3.119352 GCCTCTTTGATTCGCAGGATTTT 60.119 43.478 0.00 0.00 0.00 1.82
2452 2515 4.666237 CCTCTTTGATTCGCAGGATTTTC 58.334 43.478 0.00 0.00 0.00 2.29
2453 2516 4.156556 CCTCTTTGATTCGCAGGATTTTCA 59.843 41.667 0.00 0.00 0.00 2.69
2454 2517 5.335897 CCTCTTTGATTCGCAGGATTTTCAA 60.336 40.000 0.00 0.00 0.00 2.69
2455 2518 6.083098 TCTTTGATTCGCAGGATTTTCAAA 57.917 33.333 0.00 0.00 0.00 2.69
2456 2519 6.511416 TCTTTGATTCGCAGGATTTTCAAAA 58.489 32.000 0.00 0.00 0.00 2.44
2457 2520 6.420604 TCTTTGATTCGCAGGATTTTCAAAAC 59.579 34.615 0.00 0.00 0.00 2.43
2458 2521 4.225984 TGATTCGCAGGATTTTCAAAACG 58.774 39.130 0.00 0.00 0.00 3.60
2459 2522 3.701532 TTCGCAGGATTTTCAAAACGT 57.298 38.095 0.00 0.00 0.00 3.99
2460 2523 4.815040 TTCGCAGGATTTTCAAAACGTA 57.185 36.364 0.00 0.00 0.00 3.57
2461 2524 4.398549 TCGCAGGATTTTCAAAACGTAG 57.601 40.909 0.00 0.00 0.00 3.51
2462 2525 3.187637 TCGCAGGATTTTCAAAACGTAGG 59.812 43.478 0.00 0.00 0.00 3.18
2463 2526 3.187637 CGCAGGATTTTCAAAACGTAGGA 59.812 43.478 0.00 0.00 0.00 2.94
2464 2527 4.319911 CGCAGGATTTTCAAAACGTAGGAA 60.320 41.667 0.00 0.00 0.00 3.36
2465 2528 5.619086 CGCAGGATTTTCAAAACGTAGGAAT 60.619 40.000 0.00 0.00 0.00 3.01
2466 2529 6.402766 CGCAGGATTTTCAAAACGTAGGAATA 60.403 38.462 0.00 0.00 0.00 1.75
2467 2530 6.967199 GCAGGATTTTCAAAACGTAGGAATAG 59.033 38.462 0.00 0.00 0.00 1.73
2468 2531 7.148306 GCAGGATTTTCAAAACGTAGGAATAGA 60.148 37.037 0.00 0.00 0.00 1.98
2469 2532 8.726988 CAGGATTTTCAAAACGTAGGAATAGAA 58.273 33.333 0.00 0.00 0.00 2.10
2470 2533 9.292195 AGGATTTTCAAAACGTAGGAATAGAAA 57.708 29.630 0.00 0.00 0.00 2.52
2471 2534 9.902196 GGATTTTCAAAACGTAGGAATAGAAAA 57.098 29.630 0.00 0.00 37.88 2.29
2480 2543 9.828039 AAACGTAGGAATAGAAAAAGTATAGGG 57.172 33.333 0.00 0.00 0.00 3.53
2481 2544 8.544687 ACGTAGGAATAGAAAAAGTATAGGGT 57.455 34.615 0.00 0.00 0.00 4.34
2482 2545 8.985922 ACGTAGGAATAGAAAAAGTATAGGGTT 58.014 33.333 0.00 0.00 0.00 4.11
2483 2546 9.257651 CGTAGGAATAGAAAAAGTATAGGGTTG 57.742 37.037 0.00 0.00 0.00 3.77
2486 2549 9.907229 AGGAATAGAAAAAGTATAGGGTTGAAG 57.093 33.333 0.00 0.00 0.00 3.02
2487 2550 9.682465 GGAATAGAAAAAGTATAGGGTTGAAGT 57.318 33.333 0.00 0.00 0.00 3.01
2489 2552 9.462606 AATAGAAAAAGTATAGGGTTGAAGTGG 57.537 33.333 0.00 0.00 0.00 4.00
2490 2553 5.710567 AGAAAAAGTATAGGGTTGAAGTGGC 59.289 40.000 0.00 0.00 0.00 5.01
2491 2554 4.650972 AAAGTATAGGGTTGAAGTGGCA 57.349 40.909 0.00 0.00 0.00 4.92
2492 2555 4.862641 AAGTATAGGGTTGAAGTGGCAT 57.137 40.909 0.00 0.00 0.00 4.40
2493 2556 4.156455 AGTATAGGGTTGAAGTGGCATG 57.844 45.455 0.00 0.00 0.00 4.06
2494 2557 1.767759 ATAGGGTTGAAGTGGCATGC 58.232 50.000 9.90 9.90 0.00 4.06
2495 2558 0.403655 TAGGGTTGAAGTGGCATGCA 59.596 50.000 21.36 2.54 0.00 3.96
2496 2559 1.181098 AGGGTTGAAGTGGCATGCAC 61.181 55.000 21.36 15.34 0.00 4.57
2497 2560 1.462731 GGGTTGAAGTGGCATGCACA 61.463 55.000 21.36 12.37 0.00 4.57
2498 2561 0.318955 GGTTGAAGTGGCATGCACAC 60.319 55.000 23.70 23.70 39.10 3.82
2499 2562 0.385029 GTTGAAGTGGCATGCACACA 59.615 50.000 29.08 20.31 41.21 3.72
2500 2563 1.000060 GTTGAAGTGGCATGCACACAT 60.000 47.619 29.08 22.26 41.21 3.21
2513 2576 4.219264 TGCACACATGAATCCTACATGA 57.781 40.909 13.54 0.00 45.22 3.07
2514 2577 4.784177 TGCACACATGAATCCTACATGAT 58.216 39.130 13.54 0.69 45.22 2.45
2515 2578 5.195185 TGCACACATGAATCCTACATGATT 58.805 37.500 13.54 0.00 45.22 2.57
2516 2579 6.355747 TGCACACATGAATCCTACATGATTA 58.644 36.000 13.54 0.00 45.22 1.75
2517 2580 6.484308 TGCACACATGAATCCTACATGATTAG 59.516 38.462 13.54 0.00 45.22 1.73
2518 2581 6.567321 GCACACATGAATCCTACATGATTAGC 60.567 42.308 13.54 8.48 45.22 3.09
2519 2582 6.484308 CACACATGAATCCTACATGATTAGCA 59.516 38.462 13.54 0.00 45.22 3.49
2520 2583 7.174426 CACACATGAATCCTACATGATTAGCAT 59.826 37.037 13.54 0.00 45.22 3.79
2533 2596 5.823209 TGATTAGCATGGAGTGTTTGATG 57.177 39.130 0.00 0.00 0.00 3.07
2534 2597 4.641541 TGATTAGCATGGAGTGTTTGATGG 59.358 41.667 0.00 0.00 0.00 3.51
2535 2598 1.180029 AGCATGGAGTGTTTGATGGC 58.820 50.000 0.00 0.00 0.00 4.40
2536 2599 0.174162 GCATGGAGTGTTTGATGGCC 59.826 55.000 0.00 0.00 0.00 5.36
2537 2600 0.819582 CATGGAGTGTTTGATGGCCC 59.180 55.000 0.00 0.00 0.00 5.80
2538 2601 0.409092 ATGGAGTGTTTGATGGCCCA 59.591 50.000 0.00 0.00 0.00 5.36
2539 2602 0.251297 TGGAGTGTTTGATGGCCCAG 60.251 55.000 0.00 0.00 0.00 4.45
2540 2603 0.038166 GGAGTGTTTGATGGCCCAGA 59.962 55.000 0.00 0.00 0.00 3.86
2541 2604 1.547675 GGAGTGTTTGATGGCCCAGAA 60.548 52.381 0.00 0.00 0.00 3.02
2542 2605 2.238521 GAGTGTTTGATGGCCCAGAAA 58.761 47.619 0.00 0.00 0.00 2.52
2543 2606 2.627699 GAGTGTTTGATGGCCCAGAAAA 59.372 45.455 0.00 0.00 0.00 2.29
2544 2607 3.037549 AGTGTTTGATGGCCCAGAAAAA 58.962 40.909 0.00 0.00 0.00 1.94
2545 2608 3.070015 AGTGTTTGATGGCCCAGAAAAAG 59.930 43.478 0.00 0.00 0.00 2.27
2546 2609 2.224257 TGTTTGATGGCCCAGAAAAAGC 60.224 45.455 0.00 0.00 0.00 3.51
2547 2610 1.714541 TTGATGGCCCAGAAAAAGCA 58.285 45.000 0.00 0.00 0.00 3.91
2548 2611 1.714541 TGATGGCCCAGAAAAAGCAA 58.285 45.000 0.00 0.00 0.00 3.91
2549 2612 2.045524 TGATGGCCCAGAAAAAGCAAA 58.954 42.857 0.00 0.00 0.00 3.68
2550 2613 2.037511 TGATGGCCCAGAAAAAGCAAAG 59.962 45.455 0.00 0.00 0.00 2.77
2551 2614 0.758123 TGGCCCAGAAAAAGCAAAGG 59.242 50.000 0.00 0.00 0.00 3.11
2552 2615 1.047801 GGCCCAGAAAAAGCAAAGGA 58.952 50.000 0.00 0.00 0.00 3.36
2553 2616 1.416030 GGCCCAGAAAAAGCAAAGGAA 59.584 47.619 0.00 0.00 0.00 3.36
2554 2617 2.038952 GGCCCAGAAAAAGCAAAGGAAT 59.961 45.455 0.00 0.00 0.00 3.01
2555 2618 3.496692 GGCCCAGAAAAAGCAAAGGAATT 60.497 43.478 0.00 0.00 0.00 2.17
2556 2619 3.499537 GCCCAGAAAAAGCAAAGGAATTG 59.500 43.478 0.00 0.00 42.21 2.32
2557 2620 4.707105 CCCAGAAAAAGCAAAGGAATTGT 58.293 39.130 0.00 0.00 41.32 2.71
2558 2621 5.741673 GCCCAGAAAAAGCAAAGGAATTGTA 60.742 40.000 0.00 0.00 41.32 2.41
2559 2622 6.287525 CCCAGAAAAAGCAAAGGAATTGTAA 58.712 36.000 0.00 0.00 41.32 2.41
2560 2623 6.765512 CCCAGAAAAAGCAAAGGAATTGTAAA 59.234 34.615 0.00 0.00 41.32 2.01
2561 2624 7.281999 CCCAGAAAAAGCAAAGGAATTGTAAAA 59.718 33.333 0.00 0.00 41.32 1.52
2562 2625 8.672815 CCAGAAAAAGCAAAGGAATTGTAAAAA 58.327 29.630 0.00 0.00 41.32 1.94
2563 2626 9.706846 CAGAAAAAGCAAAGGAATTGTAAAAAG 57.293 29.630 0.00 0.00 41.32 2.27
2564 2627 9.665719 AGAAAAAGCAAAGGAATTGTAAAAAGA 57.334 25.926 0.00 0.00 41.32 2.52
2565 2628 9.920826 GAAAAAGCAAAGGAATTGTAAAAAGAG 57.079 29.630 0.00 0.00 41.32 2.85
2566 2629 8.437360 AAAAGCAAAGGAATTGTAAAAAGAGG 57.563 30.769 0.00 0.00 41.32 3.69
2567 2630 6.731292 AGCAAAGGAATTGTAAAAAGAGGT 57.269 33.333 0.00 0.00 41.32 3.85
2568 2631 7.124573 AGCAAAGGAATTGTAAAAAGAGGTT 57.875 32.000 0.00 0.00 41.32 3.50
2569 2632 8.245195 AGCAAAGGAATTGTAAAAAGAGGTTA 57.755 30.769 0.00 0.00 41.32 2.85
2570 2633 8.700973 AGCAAAGGAATTGTAAAAAGAGGTTAA 58.299 29.630 0.00 0.00 41.32 2.01
2571 2634 9.320352 GCAAAGGAATTGTAAAAAGAGGTTAAA 57.680 29.630 0.00 0.00 41.32 1.52
2641 2704 7.890515 GGAAAAATTCCTATGAGATCCAATCC 58.109 38.462 1.86 0.00 46.57 3.01
2642 2705 7.727634 GGAAAAATTCCTATGAGATCCAATCCT 59.272 37.037 1.86 0.00 46.57 3.24
2643 2706 9.799106 GAAAAATTCCTATGAGATCCAATCCTA 57.201 33.333 0.00 0.00 0.00 2.94
2645 2708 9.750783 AAAATTCCTATGAGATCCAATCCTATG 57.249 33.333 0.00 0.00 0.00 2.23
2646 2709 8.691194 AATTCCTATGAGATCCAATCCTATGA 57.309 34.615 0.00 0.00 0.00 2.15
2647 2710 8.691194 ATTCCTATGAGATCCAATCCTATGAA 57.309 34.615 0.00 0.00 0.00 2.57
2648 2711 8.691194 TTCCTATGAGATCCAATCCTATGAAT 57.309 34.615 0.00 0.00 0.00 2.57
2649 2712 8.316497 TCCTATGAGATCCAATCCTATGAATC 57.684 38.462 0.00 0.00 0.00 2.52
2650 2713 7.902941 TCCTATGAGATCCAATCCTATGAATCA 59.097 37.037 0.00 0.00 0.00 2.57
2651 2714 8.546322 CCTATGAGATCCAATCCTATGAATCAA 58.454 37.037 0.00 0.00 0.00 2.57
2652 2715 9.955102 CTATGAGATCCAATCCTATGAATCAAA 57.045 33.333 0.00 0.00 0.00 2.69
2653 2716 8.865420 ATGAGATCCAATCCTATGAATCAAAG 57.135 34.615 0.00 0.00 0.00 2.77
2654 2717 7.229308 TGAGATCCAATCCTATGAATCAAAGG 58.771 38.462 0.00 0.00 0.00 3.11
2655 2718 7.072834 TGAGATCCAATCCTATGAATCAAAGGA 59.927 37.037 0.00 0.00 43.38 3.36
2664 2727 9.736414 ATCCTATGAATCAAAGGATCAACATAG 57.264 33.333 0.00 0.00 45.06 2.23
2665 2728 8.159447 TCCTATGAATCAAAGGATCAACATAGG 58.841 37.037 22.26 22.26 46.59 2.57
2667 2730 9.565090 CTATGAATCAAAGGATCAACATAGGAA 57.435 33.333 0.00 0.00 37.76 3.36
2668 2731 8.827832 ATGAATCAAAGGATCAACATAGGAAA 57.172 30.769 0.00 0.00 31.88 3.13
2669 2732 8.648698 TGAATCAAAGGATCAACATAGGAAAA 57.351 30.769 0.00 0.00 31.88 2.29
2670 2733 9.087871 TGAATCAAAGGATCAACATAGGAAAAA 57.912 29.630 0.00 0.00 31.88 1.94
2674 2737 9.312904 TCAAAGGATCAACATAGGAAAAATTCT 57.687 29.630 0.00 0.00 0.00 2.40
2675 2738 9.933723 CAAAGGATCAACATAGGAAAAATTCTT 57.066 29.630 0.00 0.00 0.00 2.52
2681 2744 8.950007 TCAACATAGGAAAAATTCTTAAGGGT 57.050 30.769 1.85 0.00 0.00 4.34
2682 2745 9.374711 TCAACATAGGAAAAATTCTTAAGGGTT 57.625 29.630 1.85 0.00 0.00 4.11
2683 2746 9.996554 CAACATAGGAAAAATTCTTAAGGGTTT 57.003 29.630 1.85 1.72 0.00 3.27
2685 2748 9.374711 ACATAGGAAAAATTCTTAAGGGTTTCA 57.625 29.630 1.85 0.00 0.00 2.69
2688 2751 7.907389 AGGAAAAATTCTTAAGGGTTTCATCC 58.093 34.615 18.20 18.20 0.00 3.51
2689 2752 7.734865 AGGAAAAATTCTTAAGGGTTTCATCCT 59.265 33.333 20.29 20.29 35.88 3.24
2690 2753 8.375506 GGAAAAATTCTTAAGGGTTTCATCCTT 58.624 33.333 18.38 0.00 45.63 3.36
2691 2754 9.424319 GAAAAATTCTTAAGGGTTTCATCCTTC 57.576 33.333 1.85 2.12 43.02 3.46
2692 2755 8.491045 AAAATTCTTAAGGGTTTCATCCTTCA 57.509 30.769 1.85 0.00 43.02 3.02
2693 2756 7.709149 AATTCTTAAGGGTTTCATCCTTCAG 57.291 36.000 1.85 0.00 43.02 3.02
2694 2757 6.448369 TTCTTAAGGGTTTCATCCTTCAGA 57.552 37.500 1.85 1.14 43.02 3.27
2695 2758 6.448369 TCTTAAGGGTTTCATCCTTCAGAA 57.552 37.500 1.85 0.00 43.02 3.02
2696 2759 6.848069 TCTTAAGGGTTTCATCCTTCAGAAA 58.152 36.000 1.85 0.00 43.02 2.52
2697 2760 7.470192 TCTTAAGGGTTTCATCCTTCAGAAAT 58.530 34.615 1.85 0.00 43.02 2.17
2698 2761 7.950124 TCTTAAGGGTTTCATCCTTCAGAAATT 59.050 33.333 1.85 0.00 43.02 1.82
2699 2762 6.596309 AAGGGTTTCATCCTTCAGAAATTC 57.404 37.500 0.00 0.00 40.31 2.17
2700 2763 5.896963 AGGGTTTCATCCTTCAGAAATTCT 58.103 37.500 0.00 0.00 36.29 2.40
2701 2764 7.032598 AGGGTTTCATCCTTCAGAAATTCTA 57.967 36.000 0.00 0.00 36.29 2.10
2702 2765 7.646884 AGGGTTTCATCCTTCAGAAATTCTAT 58.353 34.615 0.00 0.00 36.29 1.98
2703 2766 8.781951 AGGGTTTCATCCTTCAGAAATTCTATA 58.218 33.333 0.00 0.00 36.29 1.31
2704 2767 9.061435 GGGTTTCATCCTTCAGAAATTCTATAG 57.939 37.037 0.00 0.00 36.29 1.31
2705 2768 9.838339 GGTTTCATCCTTCAGAAATTCTATAGA 57.162 33.333 0.00 0.00 36.29 1.98
2723 2786 9.547753 TTCTATAGAATTCCTTTGAATCGAAGG 57.452 33.333 20.77 20.77 44.27 3.46
2727 2790 2.403252 TCCTTTGAATCGAAGGAGCC 57.597 50.000 24.39 0.00 45.92 4.70
2728 2791 1.065418 TCCTTTGAATCGAAGGAGCCC 60.065 52.381 24.39 0.00 45.92 5.19
2769 2832 1.334288 CCGCGAACAACGAATTTGCC 61.334 55.000 8.23 0.00 45.77 4.52
2788 2851 0.682852 CCACGAGTTGTTACTCCCCA 59.317 55.000 0.00 0.00 46.63 4.96
2789 2852 1.278127 CCACGAGTTGTTACTCCCCAT 59.722 52.381 0.00 0.00 46.63 4.00
2836 2900 2.228138 ACGCACCGAACAGACTTTAA 57.772 45.000 0.00 0.00 0.00 1.52
2837 2901 2.762745 ACGCACCGAACAGACTTTAAT 58.237 42.857 0.00 0.00 0.00 1.40
2838 2902 2.735134 ACGCACCGAACAGACTTTAATC 59.265 45.455 0.00 0.00 0.00 1.75
2842 2912 4.567159 GCACCGAACAGACTTTAATCTAGG 59.433 45.833 0.00 0.00 0.00 3.02
2844 2914 4.222145 ACCGAACAGACTTTAATCTAGGCA 59.778 41.667 0.00 0.00 0.00 4.75
2900 2970 9.613428 CTACATATGGGTAACTTTTGATCAGAA 57.387 33.333 7.80 0.00 0.00 3.02
2925 2995 3.054802 CCTCTGACCCAGCTTATGACTTT 60.055 47.826 0.00 0.00 0.00 2.66
2944 3014 8.017418 TGACTTTTAATTCTTGGAAATGGTGT 57.983 30.769 0.00 0.00 0.00 4.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 2.813226 TTCTGAAACGGGGATGGGCG 62.813 60.000 0.00 0.00 0.00 6.13
63 64 1.582610 GGCTTTTTCGGGCGATGACA 61.583 55.000 0.00 0.00 0.00 3.58
97 98 3.206150 GCACACTCCTTGTTTCTCTTCA 58.794 45.455 0.00 0.00 35.67 3.02
122 123 3.052793 CACTCTAGTTCCTCCCCCTCTTA 60.053 52.174 0.00 0.00 0.00 2.10
179 198 8.904099 AGCTATAACACAAAACTGAGTACTTT 57.096 30.769 0.00 0.00 0.00 2.66
201 220 8.769359 AGGTTCAACATAGTAAAATAGGTAGCT 58.231 33.333 0.00 0.00 0.00 3.32
245 265 1.599518 AGCAAATCGACGCACCCAA 60.600 52.632 6.14 0.00 0.00 4.12
247 267 2.240612 GACAGCAAATCGACGCACCC 62.241 60.000 6.14 0.00 0.00 4.61
264 285 9.935241 AATATGATGTCCTCACACATTATAGAC 57.065 33.333 4.87 0.00 38.15 2.59
293 314 7.147863 ACAGCAGCAAATATTGTTTGGATATGA 60.148 33.333 7.82 0.00 0.00 2.15
299 320 4.624024 CAGACAGCAGCAAATATTGTTTGG 59.376 41.667 7.82 0.00 0.00 3.28
306 327 6.600822 ACAGATAAACAGACAGCAGCAAATAT 59.399 34.615 0.00 0.00 0.00 1.28
320 342 7.755591 AGTGTTTGCATATGACAGATAAACAG 58.244 34.615 6.97 0.00 37.27 3.16
375 397 8.734386 CAGGCTTCTCACTATTTTTACAAGAAT 58.266 33.333 0.00 0.00 0.00 2.40
388 410 1.826340 TTGCGGCAGGCTTCTCACTA 61.826 55.000 1.67 0.00 44.05 2.74
406 434 2.137177 AACCTACCGCCATGTGCCTT 62.137 55.000 0.00 0.00 36.24 4.35
414 443 0.887387 GCTGTGAAAACCTACCGCCA 60.887 55.000 0.00 0.00 0.00 5.69
435 464 0.685097 TTCATATCCTACCGCCAGGC 59.315 55.000 0.00 0.00 42.76 4.85
478 519 4.644234 TGGAAGCATTCTGTGACTGAAAAA 59.356 37.500 8.95 0.00 46.56 1.94
503 545 1.138859 CGGTGATAGGATGTGCCAAGA 59.861 52.381 0.00 0.00 40.02 3.02
505 547 0.908910 ACGGTGATAGGATGTGCCAA 59.091 50.000 0.00 0.00 40.02 4.52
533 575 3.055602 GGTAGATTTTCACACCCTACGGT 60.056 47.826 0.00 0.00 46.31 4.83
535 577 3.184541 CGGTAGATTTTCACACCCTACG 58.815 50.000 0.00 0.00 32.68 3.51
550 592 0.948678 GGCAAAGTTTGTGCGGTAGA 59.051 50.000 16.70 0.00 43.18 2.59
603 646 2.652095 GGTAGTAGGGTGTGGCGCA 61.652 63.158 10.83 0.00 0.00 6.09
606 649 1.600638 GGTGGTAGTAGGGTGTGGC 59.399 63.158 0.00 0.00 0.00 5.01
626 669 2.012902 GCTAAAGCTACCGCCGAGGA 62.013 60.000 3.89 0.00 39.93 3.71
658 701 1.276140 ACCCTACCGCCAAGGCATAA 61.276 55.000 12.19 0.00 46.52 1.90
666 709 0.630673 TCCTAACTACCCTACCGCCA 59.369 55.000 0.00 0.00 0.00 5.69
677 720 2.224843 TGGGTCTGACGTGTCCTAACTA 60.225 50.000 0.00 0.00 0.00 2.24
696 739 1.366111 CCGTCACCCGCTGTTTATGG 61.366 60.000 0.00 0.00 34.38 2.74
697 740 0.390603 TCCGTCACCCGCTGTTTATG 60.391 55.000 0.00 0.00 34.38 1.90
698 741 0.108329 CTCCGTCACCCGCTGTTTAT 60.108 55.000 0.00 0.00 34.38 1.40
699 742 1.290955 CTCCGTCACCCGCTGTTTA 59.709 57.895 0.00 0.00 34.38 2.01
700 743 2.030562 CTCCGTCACCCGCTGTTT 59.969 61.111 0.00 0.00 34.38 2.83
701 744 4.003788 CCTCCGTCACCCGCTGTT 62.004 66.667 0.00 0.00 34.38 3.16
702 745 4.988716 TCCTCCGTCACCCGCTGT 62.989 66.667 0.00 0.00 34.38 4.40
703 746 3.461773 ATCCTCCGTCACCCGCTG 61.462 66.667 0.00 0.00 34.38 5.18
704 747 3.461773 CATCCTCCGTCACCCGCT 61.462 66.667 0.00 0.00 34.38 5.52
706 749 4.530857 GGCATCCTCCGTCACCCG 62.531 72.222 0.00 0.00 0.00 5.28
707 750 4.530857 CGGCATCCTCCGTCACCC 62.531 72.222 0.00 0.00 44.18 4.61
717 760 1.608283 GGCAGTAGGATAACGGCATCC 60.608 57.143 9.01 9.01 44.27 3.51
718 761 1.797025 GGCAGTAGGATAACGGCATC 58.203 55.000 1.84 0.00 41.61 3.91
719 762 0.033504 CGGCAGTAGGATAACGGCAT 59.966 55.000 1.84 0.00 41.61 4.40
720 763 1.440060 CGGCAGTAGGATAACGGCA 59.560 57.895 1.84 0.00 41.61 5.69
721 764 1.300697 CCGGCAGTAGGATAACGGC 60.301 63.158 0.00 0.00 39.48 5.68
722 765 0.249322 CACCGGCAGTAGGATAACGG 60.249 60.000 0.00 0.00 46.16 4.44
723 766 0.742505 TCACCGGCAGTAGGATAACG 59.257 55.000 0.00 0.00 0.00 3.18
724 767 1.755380 AGTCACCGGCAGTAGGATAAC 59.245 52.381 0.00 0.00 0.00 1.89
725 768 2.154567 AGTCACCGGCAGTAGGATAA 57.845 50.000 0.00 0.00 0.00 1.75
726 769 2.579873 GTAGTCACCGGCAGTAGGATA 58.420 52.381 0.00 0.00 0.00 2.59
727 770 1.400737 GTAGTCACCGGCAGTAGGAT 58.599 55.000 0.00 0.00 0.00 3.24
728 771 1.028330 CGTAGTCACCGGCAGTAGGA 61.028 60.000 0.00 0.00 0.00 2.94
729 772 1.432251 CGTAGTCACCGGCAGTAGG 59.568 63.158 0.00 0.00 0.00 3.18
730 773 1.432251 CCGTAGTCACCGGCAGTAG 59.568 63.158 0.00 0.00 38.85 2.57
731 774 3.594568 CCGTAGTCACCGGCAGTA 58.405 61.111 0.00 0.00 38.85 2.74
737 780 1.226491 CTTACCGCCGTAGTCACCG 60.226 63.158 0.00 0.00 0.00 4.94
738 781 0.527565 TTCTTACCGCCGTAGTCACC 59.472 55.000 0.00 0.00 0.00 4.02
739 782 2.352503 TTTCTTACCGCCGTAGTCAC 57.647 50.000 0.00 0.00 0.00 3.67
740 783 3.383620 TTTTTCTTACCGCCGTAGTCA 57.616 42.857 0.00 0.00 0.00 3.41
741 784 3.928375 TCATTTTTCTTACCGCCGTAGTC 59.072 43.478 0.00 0.00 0.00 2.59
742 785 3.929094 TCATTTTTCTTACCGCCGTAGT 58.071 40.909 0.00 0.00 0.00 2.73
743 786 4.569162 TGATCATTTTTCTTACCGCCGTAG 59.431 41.667 0.00 0.00 0.00 3.51
744 787 4.505808 TGATCATTTTTCTTACCGCCGTA 58.494 39.130 0.00 0.00 0.00 4.02
745 788 3.340034 TGATCATTTTTCTTACCGCCGT 58.660 40.909 0.00 0.00 0.00 5.68
746 789 3.621268 TCTGATCATTTTTCTTACCGCCG 59.379 43.478 0.00 0.00 0.00 6.46
747 790 5.757850 ATCTGATCATTTTTCTTACCGCC 57.242 39.130 0.00 0.00 0.00 6.13
748 791 6.202226 GGAATCTGATCATTTTTCTTACCGC 58.798 40.000 0.00 0.00 0.00 5.68
749 792 6.257849 TCGGAATCTGATCATTTTTCTTACCG 59.742 38.462 0.00 0.00 35.46 4.02
750 793 7.553881 TCGGAATCTGATCATTTTTCTTACC 57.446 36.000 0.00 0.00 0.00 2.85
751 794 8.669243 ACTTCGGAATCTGATCATTTTTCTTAC 58.331 33.333 0.00 0.00 0.00 2.34
752 795 8.792830 ACTTCGGAATCTGATCATTTTTCTTA 57.207 30.769 0.00 0.00 0.00 2.10
753 796 7.693969 ACTTCGGAATCTGATCATTTTTCTT 57.306 32.000 0.00 0.00 0.00 2.52
754 797 7.693969 AACTTCGGAATCTGATCATTTTTCT 57.306 32.000 0.00 0.00 0.00 2.52
755 798 8.748380 AAAACTTCGGAATCTGATCATTTTTC 57.252 30.769 0.00 0.00 0.00 2.29
778 821 6.705825 TGAACAATCTGATCTCGTCTGAAAAA 59.294 34.615 0.00 0.00 38.16 1.94
779 822 6.223120 TGAACAATCTGATCTCGTCTGAAAA 58.777 36.000 0.00 0.00 38.16 2.29
780 823 5.783111 TGAACAATCTGATCTCGTCTGAAA 58.217 37.500 0.00 0.00 38.16 2.69
781 824 5.391312 TGAACAATCTGATCTCGTCTGAA 57.609 39.130 0.00 0.00 38.16 3.02
782 825 5.391312 TTGAACAATCTGATCTCGTCTGA 57.609 39.130 0.00 0.00 38.87 3.27
783 826 6.146837 AGTTTTGAACAATCTGATCTCGTCTG 59.853 38.462 0.00 0.00 0.00 3.51
784 827 6.226787 AGTTTTGAACAATCTGATCTCGTCT 58.773 36.000 0.00 0.00 0.00 4.18
785 828 6.146184 TGAGTTTTGAACAATCTGATCTCGTC 59.854 38.462 0.00 0.00 0.00 4.20
786 829 5.991606 TGAGTTTTGAACAATCTGATCTCGT 59.008 36.000 0.00 0.00 0.00 4.18
787 830 6.471976 TGAGTTTTGAACAATCTGATCTCG 57.528 37.500 0.00 0.00 0.00 4.04
788 831 8.131100 TGTTTGAGTTTTGAACAATCTGATCTC 58.869 33.333 0.00 0.00 30.96 2.75
789 832 7.999679 TGTTTGAGTTTTGAACAATCTGATCT 58.000 30.769 0.00 0.00 30.96 2.75
790 833 8.633075 TTGTTTGAGTTTTGAACAATCTGATC 57.367 30.769 0.00 0.00 38.09 2.92
791 834 9.434420 TTTTGTTTGAGTTTTGAACAATCTGAT 57.566 25.926 2.24 0.00 41.34 2.90
792 835 8.824159 TTTTGTTTGAGTTTTGAACAATCTGA 57.176 26.923 2.24 0.00 41.34 3.27
793 836 8.170553 CCTTTTGTTTGAGTTTTGAACAATCTG 58.829 33.333 2.24 0.00 41.34 2.90
794 837 7.334171 CCCTTTTGTTTGAGTTTTGAACAATCT 59.666 33.333 2.24 0.00 41.34 2.40
795 838 7.119116 ACCCTTTTGTTTGAGTTTTGAACAATC 59.881 33.333 2.24 0.00 41.34 2.67
796 839 6.939730 ACCCTTTTGTTTGAGTTTTGAACAAT 59.060 30.769 2.24 0.00 41.34 2.71
797 840 6.292150 ACCCTTTTGTTTGAGTTTTGAACAA 58.708 32.000 0.00 0.00 40.39 2.83
798 841 5.859495 ACCCTTTTGTTTGAGTTTTGAACA 58.141 33.333 0.00 0.00 0.00 3.18
799 842 5.929415 TGACCCTTTTGTTTGAGTTTTGAAC 59.071 36.000 0.00 0.00 0.00 3.18
800 843 6.102897 TGACCCTTTTGTTTGAGTTTTGAA 57.897 33.333 0.00 0.00 0.00 2.69
801 844 5.730296 TGACCCTTTTGTTTGAGTTTTGA 57.270 34.783 0.00 0.00 0.00 2.69
802 845 6.793492 TTTGACCCTTTTGTTTGAGTTTTG 57.207 33.333 0.00 0.00 0.00 2.44
803 846 6.768381 TGTTTTGACCCTTTTGTTTGAGTTTT 59.232 30.769 0.00 0.00 0.00 2.43
804 847 6.292150 TGTTTTGACCCTTTTGTTTGAGTTT 58.708 32.000 0.00 0.00 0.00 2.66
805 848 5.859495 TGTTTTGACCCTTTTGTTTGAGTT 58.141 33.333 0.00 0.00 0.00 3.01
806 849 5.476091 TGTTTTGACCCTTTTGTTTGAGT 57.524 34.783 0.00 0.00 0.00 3.41
807 850 4.869861 CCTGTTTTGACCCTTTTGTTTGAG 59.130 41.667 0.00 0.00 0.00 3.02
808 851 4.528596 TCCTGTTTTGACCCTTTTGTTTGA 59.471 37.500 0.00 0.00 0.00 2.69
809 852 4.826556 TCCTGTTTTGACCCTTTTGTTTG 58.173 39.130 0.00 0.00 0.00 2.93
810 853 5.491323 TTCCTGTTTTGACCCTTTTGTTT 57.509 34.783 0.00 0.00 0.00 2.83
811 854 5.491323 TTTCCTGTTTTGACCCTTTTGTT 57.509 34.783 0.00 0.00 0.00 2.83
812 855 5.692115 ATTTCCTGTTTTGACCCTTTTGT 57.308 34.783 0.00 0.00 0.00 2.83
813 856 7.249858 CAAAATTTCCTGTTTTGACCCTTTTG 58.750 34.615 5.63 0.00 45.02 2.44
814 857 6.127758 GCAAAATTTCCTGTTTTGACCCTTTT 60.128 34.615 13.65 0.00 45.02 2.27
815 858 5.356751 GCAAAATTTCCTGTTTTGACCCTTT 59.643 36.000 13.65 0.00 45.02 3.11
816 859 4.881273 GCAAAATTTCCTGTTTTGACCCTT 59.119 37.500 13.65 0.00 45.02 3.95
817 860 4.450976 GCAAAATTTCCTGTTTTGACCCT 58.549 39.130 13.65 0.00 45.02 4.34
818 861 3.563808 GGCAAAATTTCCTGTTTTGACCC 59.436 43.478 13.65 4.53 44.81 4.46
819 862 4.811555 GGCAAAATTTCCTGTTTTGACC 57.188 40.909 13.65 10.56 44.81 4.02
821 864 4.195416 GGTGGCAAAATTTCCTGTTTTGA 58.805 39.130 13.65 0.00 45.02 2.69
822 865 3.314913 GGGTGGCAAAATTTCCTGTTTTG 59.685 43.478 6.90 6.90 45.01 2.44
823 866 3.550820 GGGTGGCAAAATTTCCTGTTTT 58.449 40.909 0.00 0.00 0.00 2.43
824 867 2.158682 GGGGTGGCAAAATTTCCTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
825 868 1.419762 GGGGTGGCAAAATTTCCTGTT 59.580 47.619 0.00 0.00 0.00 3.16
826 869 1.055849 GGGGTGGCAAAATTTCCTGT 58.944 50.000 0.00 0.00 0.00 4.00
827 870 1.276138 GAGGGGTGGCAAAATTTCCTG 59.724 52.381 0.00 0.00 0.00 3.86
828 871 1.644509 GAGGGGTGGCAAAATTTCCT 58.355 50.000 0.00 0.00 0.00 3.36
829 872 0.246360 CGAGGGGTGGCAAAATTTCC 59.754 55.000 0.00 0.00 0.00 3.13
830 873 0.389817 GCGAGGGGTGGCAAAATTTC 60.390 55.000 0.00 0.00 0.00 2.17
831 874 1.671166 GCGAGGGGTGGCAAAATTT 59.329 52.632 0.00 0.00 0.00 1.82
832 875 2.282783 GGCGAGGGGTGGCAAAATT 61.283 57.895 0.00 0.00 0.00 1.82
833 876 2.679996 GGCGAGGGGTGGCAAAAT 60.680 61.111 0.00 0.00 0.00 1.82
834 877 4.986708 GGGCGAGGGGTGGCAAAA 62.987 66.667 0.00 0.00 0.00 2.44
871 914 1.891150 CGGTAGCCATAACCCGATAGT 59.109 52.381 0.00 0.00 43.01 2.12
878 921 0.828677 ACTGTCCGGTAGCCATAACC 59.171 55.000 0.00 0.00 0.00 2.85
879 922 2.685850 AACTGTCCGGTAGCCATAAC 57.314 50.000 0.00 0.00 0.00 1.89
880 923 3.514706 TGTTAACTGTCCGGTAGCCATAA 59.485 43.478 7.22 0.43 0.00 1.90
881 924 3.098377 TGTTAACTGTCCGGTAGCCATA 58.902 45.455 7.22 0.00 0.00 2.74
882 925 1.903860 TGTTAACTGTCCGGTAGCCAT 59.096 47.619 7.22 0.00 0.00 4.40
883 926 1.274167 CTGTTAACTGTCCGGTAGCCA 59.726 52.381 7.22 0.00 0.00 4.75
1065 1119 1.147153 GCCGAAGATGGAAGGGGAG 59.853 63.158 0.00 0.00 0.00 4.30
1144 1198 1.874345 GCCGAGGAGGACGAGAACAA 61.874 60.000 0.00 0.00 45.00 2.83
1329 1383 0.737715 GCCGTTCGCTGTCATCTTCT 60.738 55.000 0.00 0.00 0.00 2.85
1455 1509 3.749064 GGGACGAGCGCACTGAGA 61.749 66.667 11.47 0.00 0.00 3.27
1704 1758 0.694771 AGAACTGCCATGCCTTCTCA 59.305 50.000 0.00 0.00 0.00 3.27
1820 1874 4.143333 ATTCGTCGCCCTCACCGG 62.143 66.667 0.00 0.00 0.00 5.28
1852 1906 3.655211 CTTGGACCTGCCCTGGCT 61.655 66.667 9.97 0.00 42.51 4.75
1854 1908 4.052518 CCCTTGGACCTGCCCTGG 62.053 72.222 0.00 0.00 34.97 4.45
2040 2097 1.674651 GACGGGGCTGAGGGTTTTC 60.675 63.158 0.00 0.00 0.00 2.29
2078 2135 1.683319 GGGGGATTTCTGGAGTGCTTC 60.683 57.143 0.00 0.00 0.00 3.86
2094 2151 4.224818 TCTGCTTTTCCATATTTTTGGGGG 59.775 41.667 0.00 0.00 37.37 5.40
2099 2156 6.594788 TGCTCTCTGCTTTTCCATATTTTT 57.405 33.333 0.00 0.00 43.37 1.94
2137 2194 3.068590 GCAACAGTAGCAATGGCCATTAT 59.931 43.478 30.19 22.72 42.56 1.28
2200 2257 8.581057 AAAGACAATACTCGCATATTACAGAG 57.419 34.615 0.00 0.00 36.83 3.35
2244 2304 2.034878 TCACTGCCTGCCTCTATACAG 58.965 52.381 0.00 0.00 0.00 2.74
2271 2332 2.029380 CCAAACGAACTTGGGGGATTTC 60.029 50.000 7.52 0.00 41.96 2.17
2336 2397 2.143876 ATTTATCCAACTGCGCCCTT 57.856 45.000 4.18 0.00 0.00 3.95
2417 2480 6.146837 CGAATCAAAGAGGCCATATACTTGAG 59.853 42.308 5.01 0.20 0.00 3.02
2425 2488 2.564771 CTGCGAATCAAAGAGGCCATA 58.435 47.619 5.01 0.00 0.00 2.74
2426 2489 1.386533 CTGCGAATCAAAGAGGCCAT 58.613 50.000 5.01 0.00 0.00 4.40
2427 2490 0.677731 CCTGCGAATCAAAGAGGCCA 60.678 55.000 5.01 0.00 0.00 5.36
2428 2491 0.392998 TCCTGCGAATCAAAGAGGCC 60.393 55.000 0.00 0.00 0.00 5.19
2429 2492 1.673168 ATCCTGCGAATCAAAGAGGC 58.327 50.000 0.00 0.00 0.00 4.70
2430 2493 4.156556 TGAAAATCCTGCGAATCAAAGAGG 59.843 41.667 0.00 0.00 0.00 3.69
2431 2494 5.300969 TGAAAATCCTGCGAATCAAAGAG 57.699 39.130 0.00 0.00 0.00 2.85
2432 2495 5.703978 TTGAAAATCCTGCGAATCAAAGA 57.296 34.783 0.00 0.00 0.00 2.52
2433 2496 6.584056 GTTTTGAAAATCCTGCGAATCAAAG 58.416 36.000 0.00 0.00 0.00 2.77
2434 2497 5.174761 CGTTTTGAAAATCCTGCGAATCAAA 59.825 36.000 0.00 0.00 0.00 2.69
2435 2498 4.679197 CGTTTTGAAAATCCTGCGAATCAA 59.321 37.500 0.00 0.00 0.00 2.57
2436 2499 4.225984 CGTTTTGAAAATCCTGCGAATCA 58.774 39.130 0.00 0.00 0.00 2.57
2437 2500 4.226761 ACGTTTTGAAAATCCTGCGAATC 58.773 39.130 4.92 0.00 0.00 2.52
2438 2501 4.237349 ACGTTTTGAAAATCCTGCGAAT 57.763 36.364 4.92 0.00 0.00 3.34
2439 2502 3.701532 ACGTTTTGAAAATCCTGCGAA 57.298 38.095 4.92 0.00 0.00 4.70
2440 2503 3.187637 CCTACGTTTTGAAAATCCTGCGA 59.812 43.478 0.00 0.00 0.00 5.10
2441 2504 3.187637 TCCTACGTTTTGAAAATCCTGCG 59.812 43.478 0.00 0.00 0.00 5.18
2442 2505 4.759516 TCCTACGTTTTGAAAATCCTGC 57.240 40.909 0.00 0.00 0.00 4.85
2443 2506 8.263940 TCTATTCCTACGTTTTGAAAATCCTG 57.736 34.615 0.00 0.00 0.00 3.86
2444 2507 8.857694 TTCTATTCCTACGTTTTGAAAATCCT 57.142 30.769 0.00 0.00 0.00 3.24
2445 2508 9.902196 TTTTCTATTCCTACGTTTTGAAAATCC 57.098 29.630 0.00 0.00 30.49 3.01
2454 2517 9.828039 CCCTATACTTTTTCTATTCCTACGTTT 57.172 33.333 0.00 0.00 0.00 3.60
2455 2518 8.985922 ACCCTATACTTTTTCTATTCCTACGTT 58.014 33.333 0.00 0.00 0.00 3.99
2456 2519 8.544687 ACCCTATACTTTTTCTATTCCTACGT 57.455 34.615 0.00 0.00 0.00 3.57
2457 2520 9.257651 CAACCCTATACTTTTTCTATTCCTACG 57.742 37.037 0.00 0.00 0.00 3.51
2460 2523 9.907229 CTTCAACCCTATACTTTTTCTATTCCT 57.093 33.333 0.00 0.00 0.00 3.36
2461 2524 9.682465 ACTTCAACCCTATACTTTTTCTATTCC 57.318 33.333 0.00 0.00 0.00 3.01
2463 2526 9.462606 CCACTTCAACCCTATACTTTTTCTATT 57.537 33.333 0.00 0.00 0.00 1.73
2464 2527 7.556635 GCCACTTCAACCCTATACTTTTTCTAT 59.443 37.037 0.00 0.00 0.00 1.98
2465 2528 6.882678 GCCACTTCAACCCTATACTTTTTCTA 59.117 38.462 0.00 0.00 0.00 2.10
2466 2529 5.710567 GCCACTTCAACCCTATACTTTTTCT 59.289 40.000 0.00 0.00 0.00 2.52
2467 2530 5.475564 TGCCACTTCAACCCTATACTTTTTC 59.524 40.000 0.00 0.00 0.00 2.29
2468 2531 5.390387 TGCCACTTCAACCCTATACTTTTT 58.610 37.500 0.00 0.00 0.00 1.94
2469 2532 4.993028 TGCCACTTCAACCCTATACTTTT 58.007 39.130 0.00 0.00 0.00 2.27
2470 2533 4.650972 TGCCACTTCAACCCTATACTTT 57.349 40.909 0.00 0.00 0.00 2.66
2471 2534 4.526970 CATGCCACTTCAACCCTATACTT 58.473 43.478 0.00 0.00 0.00 2.24
2472 2535 3.685550 GCATGCCACTTCAACCCTATACT 60.686 47.826 6.36 0.00 0.00 2.12
2473 2536 2.618709 GCATGCCACTTCAACCCTATAC 59.381 50.000 6.36 0.00 0.00 1.47
2474 2537 2.240921 TGCATGCCACTTCAACCCTATA 59.759 45.455 16.68 0.00 0.00 1.31
2475 2538 1.005805 TGCATGCCACTTCAACCCTAT 59.994 47.619 16.68 0.00 0.00 2.57
2476 2539 0.403655 TGCATGCCACTTCAACCCTA 59.596 50.000 16.68 0.00 0.00 3.53
2477 2540 1.153524 TGCATGCCACTTCAACCCT 59.846 52.632 16.68 0.00 0.00 4.34
2478 2541 1.290009 GTGCATGCCACTTCAACCC 59.710 57.895 16.68 0.00 41.35 4.11
2479 2542 0.318955 GTGTGCATGCCACTTCAACC 60.319 55.000 23.79 4.29 44.92 3.77
2480 2543 0.385029 TGTGTGCATGCCACTTCAAC 59.615 50.000 28.04 15.25 44.92 3.18
2481 2544 1.000052 CATGTGTGCATGCCACTTCAA 60.000 47.619 28.04 15.69 44.87 2.69
2482 2545 0.599060 CATGTGTGCATGCCACTTCA 59.401 50.000 28.04 20.95 44.87 3.02
2483 2546 3.411808 CATGTGTGCATGCCACTTC 57.588 52.632 28.04 17.68 44.87 3.01
2491 2554 4.784177 TCATGTAGGATTCATGTGTGCAT 58.216 39.130 0.00 0.00 42.03 3.96
2492 2555 4.219264 TCATGTAGGATTCATGTGTGCA 57.781 40.909 5.94 0.00 42.03 4.57
2493 2556 5.762825 AATCATGTAGGATTCATGTGTGC 57.237 39.130 5.94 0.00 42.03 4.57
2494 2557 6.484308 TGCTAATCATGTAGGATTCATGTGTG 59.516 38.462 0.00 0.00 42.03 3.82
2495 2558 6.594744 TGCTAATCATGTAGGATTCATGTGT 58.405 36.000 0.00 0.00 42.03 3.72
2496 2559 7.527457 CATGCTAATCATGTAGGATTCATGTG 58.473 38.462 10.37 0.00 45.79 3.21
2497 2560 7.683437 CATGCTAATCATGTAGGATTCATGT 57.317 36.000 10.37 0.00 45.79 3.21
2510 2573 5.301045 CCATCAAACACTCCATGCTAATCAT 59.699 40.000 0.00 0.00 35.31 2.45
2511 2574 4.641541 CCATCAAACACTCCATGCTAATCA 59.358 41.667 0.00 0.00 0.00 2.57
2512 2575 4.498682 GCCATCAAACACTCCATGCTAATC 60.499 45.833 0.00 0.00 0.00 1.75
2513 2576 3.382546 GCCATCAAACACTCCATGCTAAT 59.617 43.478 0.00 0.00 0.00 1.73
2514 2577 2.754552 GCCATCAAACACTCCATGCTAA 59.245 45.455 0.00 0.00 0.00 3.09
2515 2578 2.368439 GCCATCAAACACTCCATGCTA 58.632 47.619 0.00 0.00 0.00 3.49
2516 2579 1.180029 GCCATCAAACACTCCATGCT 58.820 50.000 0.00 0.00 0.00 3.79
2517 2580 0.174162 GGCCATCAAACACTCCATGC 59.826 55.000 0.00 0.00 0.00 4.06
2518 2581 0.819582 GGGCCATCAAACACTCCATG 59.180 55.000 4.39 0.00 0.00 3.66
2519 2582 0.409092 TGGGCCATCAAACACTCCAT 59.591 50.000 0.00 0.00 0.00 3.41
2520 2583 0.251297 CTGGGCCATCAAACACTCCA 60.251 55.000 6.72 0.00 0.00 3.86
2521 2584 0.038166 TCTGGGCCATCAAACACTCC 59.962 55.000 6.72 0.00 0.00 3.85
2522 2585 1.909700 TTCTGGGCCATCAAACACTC 58.090 50.000 6.72 0.00 0.00 3.51
2523 2586 2.380064 TTTCTGGGCCATCAAACACT 57.620 45.000 6.72 0.00 0.00 3.55
2524 2587 3.392882 CTTTTTCTGGGCCATCAAACAC 58.607 45.455 6.72 0.00 0.00 3.32
2525 2588 2.224257 GCTTTTTCTGGGCCATCAAACA 60.224 45.455 6.72 1.65 0.00 2.83
2526 2589 2.224257 TGCTTTTTCTGGGCCATCAAAC 60.224 45.455 6.72 0.00 0.00 2.93
2527 2590 2.045524 TGCTTTTTCTGGGCCATCAAA 58.954 42.857 6.72 6.69 0.00 2.69
2528 2591 1.714541 TGCTTTTTCTGGGCCATCAA 58.285 45.000 6.72 0.00 0.00 2.57
2529 2592 1.714541 TTGCTTTTTCTGGGCCATCA 58.285 45.000 6.72 0.00 0.00 3.07
2530 2593 2.613725 CCTTTGCTTTTTCTGGGCCATC 60.614 50.000 6.72 0.00 0.00 3.51
2531 2594 1.348696 CCTTTGCTTTTTCTGGGCCAT 59.651 47.619 6.72 0.00 0.00 4.40
2532 2595 0.758123 CCTTTGCTTTTTCTGGGCCA 59.242 50.000 5.85 5.85 0.00 5.36
2533 2596 1.047801 TCCTTTGCTTTTTCTGGGCC 58.952 50.000 0.00 0.00 0.00 5.80
2534 2597 2.908688 TTCCTTTGCTTTTTCTGGGC 57.091 45.000 0.00 0.00 0.00 5.36
2535 2598 4.707105 ACAATTCCTTTGCTTTTTCTGGG 58.293 39.130 0.00 0.00 39.03 4.45
2536 2599 7.784633 TTTACAATTCCTTTGCTTTTTCTGG 57.215 32.000 0.00 0.00 39.03 3.86
2537 2600 9.706846 CTTTTTACAATTCCTTTGCTTTTTCTG 57.293 29.630 0.00 0.00 39.03 3.02
2538 2601 9.665719 TCTTTTTACAATTCCTTTGCTTTTTCT 57.334 25.926 0.00 0.00 39.03 2.52
2539 2602 9.920826 CTCTTTTTACAATTCCTTTGCTTTTTC 57.079 29.630 0.00 0.00 39.03 2.29
2540 2603 8.892723 CCTCTTTTTACAATTCCTTTGCTTTTT 58.107 29.630 0.00 0.00 39.03 1.94
2541 2604 8.046708 ACCTCTTTTTACAATTCCTTTGCTTTT 58.953 29.630 0.00 0.00 39.03 2.27
2542 2605 7.564793 ACCTCTTTTTACAATTCCTTTGCTTT 58.435 30.769 0.00 0.00 39.03 3.51
2543 2606 7.124573 ACCTCTTTTTACAATTCCTTTGCTT 57.875 32.000 0.00 0.00 39.03 3.91
2544 2607 6.731292 ACCTCTTTTTACAATTCCTTTGCT 57.269 33.333 0.00 0.00 39.03 3.91
2545 2608 8.880878 TTAACCTCTTTTTACAATTCCTTTGC 57.119 30.769 0.00 0.00 39.03 3.68
2617 2680 8.703378 AGGATTGGATCTCATAGGAATTTTTC 57.297 34.615 0.00 0.00 0.00 2.29
2619 2682 9.750783 CATAGGATTGGATCTCATAGGAATTTT 57.249 33.333 0.00 0.00 0.00 1.82
2620 2683 9.120658 TCATAGGATTGGATCTCATAGGAATTT 57.879 33.333 0.00 0.00 0.00 1.82
2621 2684 8.691194 TCATAGGATTGGATCTCATAGGAATT 57.309 34.615 0.00 0.00 0.00 2.17
2622 2685 8.691194 TTCATAGGATTGGATCTCATAGGAAT 57.309 34.615 0.00 0.00 0.00 3.01
2623 2686 8.691194 ATTCATAGGATTGGATCTCATAGGAA 57.309 34.615 5.19 5.19 0.00 3.36
2624 2687 7.902941 TGATTCATAGGATTGGATCTCATAGGA 59.097 37.037 0.00 0.00 33.45 2.94
2625 2688 8.087303 TGATTCATAGGATTGGATCTCATAGG 57.913 38.462 0.00 0.00 33.45 2.57
2626 2689 9.955102 TTTGATTCATAGGATTGGATCTCATAG 57.045 33.333 0.00 0.00 33.45 2.23
2627 2690 9.955102 CTTTGATTCATAGGATTGGATCTCATA 57.045 33.333 0.00 0.00 33.45 2.15
2628 2691 7.889073 CCTTTGATTCATAGGATTGGATCTCAT 59.111 37.037 15.80 0.00 35.14 2.90
2629 2692 7.072834 TCCTTTGATTCATAGGATTGGATCTCA 59.927 37.037 18.57 0.00 36.84 3.27
2630 2693 7.456725 TCCTTTGATTCATAGGATTGGATCTC 58.543 38.462 18.57 0.00 36.84 2.75
2631 2694 7.398289 TCCTTTGATTCATAGGATTGGATCT 57.602 36.000 18.57 0.00 36.84 2.75
2632 2695 7.886970 TGATCCTTTGATTCATAGGATTGGATC 59.113 37.037 28.53 20.50 46.76 3.36
2633 2696 7.762610 TGATCCTTTGATTCATAGGATTGGAT 58.237 34.615 28.53 14.79 46.76 3.41
2634 2697 7.152942 TGATCCTTTGATTCATAGGATTGGA 57.847 36.000 28.53 17.94 46.76 3.53
2635 2698 7.286087 TGTTGATCCTTTGATTCATAGGATTGG 59.714 37.037 28.53 6.57 46.76 3.16
2636 2699 8.229253 TGTTGATCCTTTGATTCATAGGATTG 57.771 34.615 28.53 6.10 46.76 2.67
2639 2702 8.159447 CCTATGTTGATCCTTTGATTCATAGGA 58.841 37.037 22.92 22.92 45.49 2.94
2640 2703 8.159447 TCCTATGTTGATCCTTTGATTCATAGG 58.841 37.037 14.95 14.95 44.97 2.57
2641 2704 9.565090 TTCCTATGTTGATCCTTTGATTCATAG 57.435 33.333 0.00 0.00 37.30 2.23
2642 2705 9.919416 TTTCCTATGTTGATCCTTTGATTCATA 57.081 29.630 0.00 0.00 0.00 2.15
2643 2706 8.827832 TTTCCTATGTTGATCCTTTGATTCAT 57.172 30.769 0.00 0.00 0.00 2.57
2644 2707 8.648698 TTTTCCTATGTTGATCCTTTGATTCA 57.351 30.769 0.00 0.00 0.00 2.57
2648 2711 9.312904 AGAATTTTTCCTATGTTGATCCTTTGA 57.687 29.630 0.00 0.00 0.00 2.69
2649 2712 9.933723 AAGAATTTTTCCTATGTTGATCCTTTG 57.066 29.630 0.00 0.00 0.00 2.77
2655 2718 9.547279 ACCCTTAAGAATTTTTCCTATGTTGAT 57.453 29.630 3.36 0.00 0.00 2.57
2656 2719 8.950007 ACCCTTAAGAATTTTTCCTATGTTGA 57.050 30.769 3.36 0.00 0.00 3.18
2657 2720 9.996554 AAACCCTTAAGAATTTTTCCTATGTTG 57.003 29.630 3.36 0.00 0.00 3.33
2659 2722 9.374711 TGAAACCCTTAAGAATTTTTCCTATGT 57.625 29.630 3.36 0.00 0.00 2.29
2662 2725 9.031537 GGATGAAACCCTTAAGAATTTTTCCTA 57.968 33.333 3.36 0.00 0.00 2.94
2663 2726 7.734865 AGGATGAAACCCTTAAGAATTTTTCCT 59.265 33.333 18.70 18.70 0.00 3.36
2664 2727 7.907389 AGGATGAAACCCTTAAGAATTTTTCC 58.093 34.615 3.36 12.77 0.00 3.13
2665 2728 9.424319 GAAGGATGAAACCCTTAAGAATTTTTC 57.576 33.333 3.36 7.42 43.59 2.29
2666 2729 8.933653 TGAAGGATGAAACCCTTAAGAATTTTT 58.066 29.630 3.36 0.00 43.59 1.94
2667 2730 8.491045 TGAAGGATGAAACCCTTAAGAATTTT 57.509 30.769 3.36 0.00 43.59 1.82
2668 2731 7.950124 TCTGAAGGATGAAACCCTTAAGAATTT 59.050 33.333 3.36 3.88 44.47 1.82
2669 2732 7.470192 TCTGAAGGATGAAACCCTTAAGAATT 58.530 34.615 3.36 0.00 44.47 2.17
2670 2733 7.032598 TCTGAAGGATGAAACCCTTAAGAAT 57.967 36.000 3.36 0.00 44.47 2.40
2671 2734 6.448369 TCTGAAGGATGAAACCCTTAAGAA 57.552 37.500 3.36 0.00 44.47 2.52
2672 2735 6.448369 TTCTGAAGGATGAAACCCTTAAGA 57.552 37.500 3.36 5.14 45.30 2.10
2673 2736 7.709149 ATTTCTGAAGGATGAAACCCTTAAG 57.291 36.000 0.00 0.00 43.59 1.85
2674 2737 7.950124 AGAATTTCTGAAGGATGAAACCCTTAA 59.050 33.333 0.00 0.00 43.59 1.85
2675 2738 7.470192 AGAATTTCTGAAGGATGAAACCCTTA 58.530 34.615 0.00 0.00 43.59 2.69
2676 2739 6.318112 AGAATTTCTGAAGGATGAAACCCTT 58.682 36.000 0.00 0.00 46.03 3.95
2677 2740 5.896963 AGAATTTCTGAAGGATGAAACCCT 58.103 37.500 0.00 0.00 35.40 4.34
2678 2741 7.888250 ATAGAATTTCTGAAGGATGAAACCC 57.112 36.000 9.22 0.00 35.40 4.11
2679 2742 9.838339 TCTATAGAATTTCTGAAGGATGAAACC 57.162 33.333 9.22 0.00 35.40 3.27
2697 2760 9.547753 CCTTCGATTCAAAGGAATTCTATAGAA 57.452 33.333 17.32 17.32 45.15 2.10
2709 2772 1.065126 AGGGCTCCTTCGATTCAAAGG 60.065 52.381 0.00 0.00 43.94 3.11
2710 2773 2.409948 AGGGCTCCTTCGATTCAAAG 57.590 50.000 0.00 0.00 0.00 2.77
2711 2774 5.623956 TTATAGGGCTCCTTCGATTCAAA 57.376 39.130 0.00 0.00 34.61 2.69
2712 2775 5.825593 ATTATAGGGCTCCTTCGATTCAA 57.174 39.130 0.00 0.00 34.61 2.69
2713 2776 5.071788 ACAATTATAGGGCTCCTTCGATTCA 59.928 40.000 0.00 0.00 34.61 2.57
2714 2777 5.552178 ACAATTATAGGGCTCCTTCGATTC 58.448 41.667 0.00 0.00 34.61 2.52
2715 2778 5.568620 ACAATTATAGGGCTCCTTCGATT 57.431 39.130 0.00 0.00 34.61 3.34
2716 2779 5.542635 TGTACAATTATAGGGCTCCTTCGAT 59.457 40.000 0.00 0.00 34.61 3.59
2717 2780 4.897076 TGTACAATTATAGGGCTCCTTCGA 59.103 41.667 0.00 0.00 34.61 3.71
2718 2781 4.989168 GTGTACAATTATAGGGCTCCTTCG 59.011 45.833 0.00 0.00 34.61 3.79
2719 2782 4.989168 CGTGTACAATTATAGGGCTCCTTC 59.011 45.833 0.00 0.00 34.61 3.46
2720 2783 4.742743 GCGTGTACAATTATAGGGCTCCTT 60.743 45.833 0.00 0.00 34.61 3.36
2721 2784 3.244112 GCGTGTACAATTATAGGGCTCCT 60.244 47.826 0.00 0.00 37.71 3.69
2722 2785 3.064931 GCGTGTACAATTATAGGGCTCC 58.935 50.000 0.00 0.00 0.00 4.70
2723 2786 3.724374 TGCGTGTACAATTATAGGGCTC 58.276 45.455 0.00 0.00 0.00 4.70
2724 2787 3.830744 TGCGTGTACAATTATAGGGCT 57.169 42.857 0.00 0.00 0.00 5.19
2725 2788 3.813166 ACATGCGTGTACAATTATAGGGC 59.187 43.478 10.57 0.00 36.63 5.19
2726 2789 5.049680 GGAACATGCGTGTACAATTATAGGG 60.050 44.000 12.96 0.00 37.67 3.53
2727 2790 5.049680 GGGAACATGCGTGTACAATTATAGG 60.050 44.000 12.96 0.00 37.67 2.57
2728 2791 5.333035 CGGGAACATGCGTGTACAATTATAG 60.333 44.000 12.96 0.00 37.67 1.31
2769 2832 0.682852 TGGGGAGTAACAACTCGTGG 59.317 55.000 0.00 0.00 37.61 4.94
2788 2851 3.441572 GTCCAGAAGTGCAAACATAGCAT 59.558 43.478 0.00 0.00 44.79 3.79
2789 2852 2.813754 GTCCAGAAGTGCAAACATAGCA 59.186 45.455 0.00 0.00 40.19 3.49
2836 2900 1.135083 CGTCACGGTTTCTGCCTAGAT 60.135 52.381 0.00 0.00 31.81 1.98
2837 2901 0.242825 CGTCACGGTTTCTGCCTAGA 59.757 55.000 0.00 0.00 0.00 2.43
2838 2902 0.242825 TCGTCACGGTTTCTGCCTAG 59.757 55.000 0.00 0.00 0.00 3.02
2842 2912 1.291877 ATGCTCGTCACGGTTTCTGC 61.292 55.000 0.00 0.00 0.00 4.26
2844 2914 2.481449 GGATATGCTCGTCACGGTTTCT 60.481 50.000 0.00 0.00 0.00 2.52
2900 2970 2.114616 CATAAGCTGGGTCAGAGGACT 58.885 52.381 0.00 0.00 43.77 3.85
2925 2995 4.082463 GGCGACACCATTTCCAAGAATTAA 60.082 41.667 0.00 0.00 38.86 1.40
2942 3012 0.597568 CCAAAGCAAATCTGGCGACA 59.402 50.000 0.00 0.00 39.59 4.35
2944 3014 0.251121 TCCCAAAGCAAATCTGGCGA 60.251 50.000 0.00 0.00 36.08 5.54


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.