Multiple sequence alignment - TraesCS4A01G117200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G117200 chr4A 100.000 5642 0 0 1 5642 143238363 143244004 0.000000e+00 10419.0
1 TraesCS4A01G117200 chr4B 97.390 4406 64 14 1239 5642 407073017 407068661 0.000000e+00 7452.0
2 TraesCS4A01G117200 chr4B 92.486 519 14 3 674 1178 407073809 407073302 0.000000e+00 719.0
3 TraesCS4A01G117200 chr4B 95.105 143 2 2 4145 4282 90723874 90723732 2.650000e-53 220.0
4 TraesCS4A01G117200 chr4B 80.000 180 26 9 1 175 416247865 416247691 2.130000e-24 124.0
5 TraesCS4A01G117200 chr4D 96.288 2775 59 11 1326 4081 327734195 327731446 0.000000e+00 4514.0
6 TraesCS4A01G117200 chr4D 97.506 1363 30 3 4281 5642 327731462 327730103 0.000000e+00 2326.0
7 TraesCS4A01G117200 chr4D 94.816 598 16 2 716 1299 327734787 327734191 0.000000e+00 918.0
8 TraesCS4A01G117200 chr4D 92.231 502 33 5 224 724 327736011 327735515 0.000000e+00 706.0
9 TraesCS4A01G117200 chr4D 88.053 226 17 7 3 221 327736175 327735953 5.610000e-65 259.0
10 TraesCS4A01G117200 chr4D 91.975 162 6 4 4128 4282 48073460 48073621 2.650000e-53 220.0
11 TraesCS4A01G117200 chr7B 95.205 146 2 2 4142 4282 440795124 440794979 5.690000e-55 226.0
12 TraesCS4A01G117200 chr7B 95.556 45 1 1 539 582 683166895 683166851 2.820000e-08 71.3
13 TraesCS4A01G117200 chr7B 95.238 42 2 0 539 580 429215437 429215396 3.650000e-07 67.6
14 TraesCS4A01G117200 chr1A 92.073 164 6 4 4128 4284 477660857 477660694 2.050000e-54 224.0
15 TraesCS4A01G117200 chr6A 92.357 157 10 2 4128 4282 258137674 258137830 7.360000e-54 222.0
16 TraesCS4A01G117200 chr6A 89.595 173 10 5 4128 4293 417561697 417561868 4.430000e-51 213.0
17 TraesCS4A01G117200 chr6D 91.975 162 6 4 4128 4282 429743429 429743590 2.650000e-53 220.0
18 TraesCS4A01G117200 chr6D 91.667 48 4 0 535 582 78782146 78782099 3.650000e-07 67.6
19 TraesCS4A01G117200 chr5B 94.521 146 2 3 4142 4282 279099245 279099101 2.650000e-53 220.0
20 TraesCS4A01G117200 chr6B 83.898 118 19 0 1 118 26023324 26023441 4.620000e-21 113.0
21 TraesCS4A01G117200 chr3B 100.000 41 0 0 542 582 776230177 776230137 6.060000e-10 76.8
22 TraesCS4A01G117200 chr1B 90.909 55 4 1 528 582 343665297 343665350 7.840000e-09 73.1
23 TraesCS4A01G117200 chr1B 91.837 49 3 1 532 580 576029093 576029140 3.650000e-07 67.6
24 TraesCS4A01G117200 chr7D 95.455 44 1 1 539 582 235530952 235530994 1.010000e-07 69.4
25 TraesCS4A01G117200 chr3A 97.561 41 0 1 542 581 384310644 384310604 1.010000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G117200 chr4A 143238363 143244004 5641 False 10419.0 10419 100.0000 1 5642 1 chr4A.!!$F1 5641
1 TraesCS4A01G117200 chr4B 407068661 407073809 5148 True 4085.5 7452 94.9380 674 5642 2 chr4B.!!$R3 4968
2 TraesCS4A01G117200 chr4D 327730103 327736175 6072 True 1744.6 4514 93.7788 3 5642 5 chr4D.!!$R1 5639

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
661 667 0.178068 ATGCTCTAACCGAATGCCGT 59.822 50.000 0.00 0.0 36.31 5.68 F
1181 1937 0.821517 TCGATGCACTATGGTCCGTT 59.178 50.000 0.00 0.0 0.00 4.44 F
2621 3615 1.276421 ACCTGGTCTCGTGGAATTCAG 59.724 52.381 7.93 0.0 0.00 3.02 F
4119 5131 0.178873 AAGCCTGAAGGACTGGGGTA 60.179 55.000 0.00 0.0 37.94 3.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1661 2642 3.387962 TGAGCCATGAAGTCCTTCCTAT 58.612 45.455 4.67 0.00 38.77 2.57 R
3133 4127 1.665679 GACAGTGTATCCACCATTGCG 59.334 52.381 0.00 0.00 42.88 4.85 R
4101 5113 0.044855 ATACCCCAGTCCTTCAGGCT 59.955 55.000 0.00 0.00 34.44 4.58 R
5183 6391 0.609681 TGATGCCATGAACAGCTGCA 60.610 50.000 15.27 4.85 36.23 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 1.004560 CTTTCAGCTCCTGCCACGA 60.005 57.895 0.00 0.00 40.80 4.35
82 83 2.048784 CTCGATGCCGGCGATCAT 60.049 61.111 27.25 16.05 37.13 2.45
84 85 2.356194 CGATGCCGGCGATCATCA 60.356 61.111 28.05 10.58 39.11 3.07
95 96 0.605589 CGATCATCAGACCCTAGCCC 59.394 60.000 0.00 0.00 0.00 5.19
97 98 0.570218 ATCATCAGACCCTAGCCCCT 59.430 55.000 0.00 0.00 0.00 4.79
132 133 2.664851 CGCCCGCAGAGTTGTTGA 60.665 61.111 0.00 0.00 0.00 3.18
175 180 1.507974 CGAGCTAGCTACTGCCGCTA 61.508 60.000 19.38 0.00 43.36 4.26
177 182 0.466555 AGCTAGCTACTGCCGCTACT 60.467 55.000 17.69 0.00 42.16 2.57
179 184 1.025812 CTAGCTACTGCCGCTACTGT 58.974 55.000 0.00 0.00 40.80 3.55
188 193 4.415332 CGCTACTGTCGCCACCGT 62.415 66.667 0.00 0.00 35.54 4.83
189 194 2.809601 GCTACTGTCGCCACCGTG 60.810 66.667 0.00 0.00 35.54 4.94
190 195 2.959372 CTACTGTCGCCACCGTGA 59.041 61.111 0.00 0.00 35.54 4.35
191 196 1.154016 CTACTGTCGCCACCGTGAG 60.154 63.158 0.00 0.00 35.54 3.51
192 197 3.277211 TACTGTCGCCACCGTGAGC 62.277 63.158 0.00 1.02 35.54 4.26
193 198 4.363990 CTGTCGCCACCGTGAGCT 62.364 66.667 0.00 0.00 35.54 4.09
194 199 2.986979 TGTCGCCACCGTGAGCTA 60.987 61.111 0.00 0.00 35.54 3.32
195 200 2.202623 GTCGCCACCGTGAGCTAG 60.203 66.667 0.00 0.00 35.54 3.42
196 201 4.129737 TCGCCACCGTGAGCTAGC 62.130 66.667 6.62 6.62 35.54 3.42
197 202 4.135153 CGCCACCGTGAGCTAGCT 62.135 66.667 19.45 19.45 0.00 3.32
198 203 2.771639 CGCCACCGTGAGCTAGCTA 61.772 63.158 19.38 3.38 0.00 3.32
199 204 1.066587 GCCACCGTGAGCTAGCTAG 59.933 63.158 19.38 16.84 0.00 3.42
231 236 3.503363 GCCACCGCAAGCTAGCTG 61.503 66.667 20.16 13.51 34.03 4.24
232 237 3.503363 CCACCGCAAGCTAGCTGC 61.503 66.667 20.16 21.27 43.29 5.25
306 311 1.078918 TGCTCATCTTGCTCCACGG 60.079 57.895 0.00 0.00 0.00 4.94
338 343 2.042831 GGCAAGATGCGTGCTCCTT 61.043 57.895 5.42 0.00 46.21 3.36
347 352 1.882989 GCGTGCTCCTTCTCTGTCCT 61.883 60.000 0.00 0.00 0.00 3.85
362 367 1.819288 TGTCCTTGACGAGATCCTCAC 59.181 52.381 0.00 0.00 34.95 3.51
366 371 0.526211 TTGACGAGATCCTCACGGTG 59.474 55.000 0.56 0.56 34.82 4.94
372 377 2.284625 ATCCTCACGGTGGGAGCA 60.285 61.111 10.19 0.00 34.89 4.26
380 385 3.083997 GGTGGGAGCAGTCGGGAT 61.084 66.667 0.00 0.00 0.00 3.85
385 390 1.700042 GGGAGCAGTCGGGATGGATT 61.700 60.000 0.00 0.00 0.00 3.01
391 396 3.136443 AGCAGTCGGGATGGATTCAATTA 59.864 43.478 0.00 0.00 0.00 1.40
424 429 4.398358 GGACACTTTTAGAGGGGTTTATGC 59.602 45.833 0.00 0.00 30.95 3.14
438 443 0.736053 TTATGCGATTTTGCCGGGAC 59.264 50.000 2.18 0.00 0.00 4.46
453 458 5.897050 TGCCGGGACAATGAAATATTTTAC 58.103 37.500 2.18 0.00 0.00 2.01
456 461 5.297278 CCGGGACAATGAAATATTTTACGGA 59.703 40.000 10.20 0.00 37.43 4.69
468 473 7.865706 AATATTTTACGGAATCTGTTCTGCT 57.134 32.000 0.00 0.00 43.22 4.24
527 533 9.316730 ACGTTTTGCTATATCCTTAAAATACGA 57.683 29.630 0.00 0.00 0.00 3.43
661 667 0.178068 ATGCTCTAACCGAATGCCGT 59.822 50.000 0.00 0.00 36.31 5.68
733 1475 3.246880 ACCTTCCCACCCCACGTC 61.247 66.667 0.00 0.00 0.00 4.34
968 1724 4.057428 AGCCGCGACGCTCTTTCT 62.057 61.111 19.02 4.46 32.06 2.52
1087 1843 1.448540 CATTTCGTCGAGCAGGGCT 60.449 57.895 0.00 0.00 43.88 5.19
1163 1919 2.247267 CGTTTCCGTTGCCGTGTC 59.753 61.111 0.00 0.00 0.00 3.67
1181 1937 0.821517 TCGATGCACTATGGTCCGTT 59.178 50.000 0.00 0.00 0.00 4.44
1248 2228 9.605275 CTTGAGTAGATGAATTATCAGGTTTGA 57.395 33.333 0.00 0.00 39.39 2.69
1561 2542 9.182214 GCACAATGAGGTTATCAATATCCATAT 57.818 33.333 0.00 0.00 42.53 1.78
1661 2642 1.634757 CCGCAAGCTGCACGTGAATA 61.635 55.000 22.23 3.39 45.36 1.75
1676 2657 6.516718 CACGTGAATATAGGAAGGACTTCAT 58.483 40.000 10.90 9.19 41.20 2.57
1747 2728 9.359653 CTGTTGGGATTATCTTAAATCATCCTT 57.640 33.333 0.00 0.00 37.56 3.36
1792 2773 9.474313 AATGTTTTACATACATGGTAGATTGGT 57.526 29.630 0.00 0.00 37.97 3.67
1794 2775 9.607988 TGTTTTACATACATGGTAGATTGGTAG 57.392 33.333 0.00 0.00 0.00 3.18
1806 2800 9.601810 ATGGTAGATTGGTAGTATCATGTAGAA 57.398 33.333 0.00 0.00 0.00 2.10
1807 2801 9.601810 TGGTAGATTGGTAGTATCATGTAGAAT 57.398 33.333 0.00 0.00 0.00 2.40
1991 2985 6.521162 TCATTTCCGTAGCTATAAGCATTCA 58.479 36.000 0.00 0.00 45.56 2.57
2142 3136 2.875094 AGGAAATCACTTCAGCAGCT 57.125 45.000 0.00 0.00 35.55 4.24
2566 3560 2.327325 AGGGAGGACAGCTAGACAAA 57.673 50.000 0.00 0.00 0.00 2.83
2621 3615 1.276421 ACCTGGTCTCGTGGAATTCAG 59.724 52.381 7.93 0.00 0.00 3.02
3133 4127 1.265905 CCAAAGGTTGAACACTACGGC 59.734 52.381 0.00 0.00 0.00 5.68
3500 4494 8.890410 TCATCCTGATTCTGATGATATCTACA 57.110 34.615 3.98 3.59 41.72 2.74
3517 4511 1.241990 ACAGAGTGCTGCATGGCTTG 61.242 55.000 5.27 3.51 46.26 4.01
3520 4514 0.388134 GAGTGCTGCATGGCTTGTTG 60.388 55.000 5.27 0.00 0.00 3.33
3875 4869 2.166459 CAGCGTCCTATCAGGAGTTTGA 59.834 50.000 0.00 0.00 46.90 2.69
4064 5076 5.010012 CACTTTTAGCTGGTCCACAAGATTT 59.990 40.000 0.00 0.00 0.00 2.17
4065 5077 5.598417 ACTTTTAGCTGGTCCACAAGATTTT 59.402 36.000 0.00 0.00 0.00 1.82
4066 5078 5.705609 TTTAGCTGGTCCACAAGATTTTC 57.294 39.130 0.00 0.00 0.00 2.29
4067 5079 3.515602 AGCTGGTCCACAAGATTTTCT 57.484 42.857 0.00 0.00 0.00 2.52
4068 5080 3.416156 AGCTGGTCCACAAGATTTTCTC 58.584 45.455 0.00 0.00 0.00 2.87
4069 5081 3.073650 AGCTGGTCCACAAGATTTTCTCT 59.926 43.478 0.00 0.00 34.96 3.10
4070 5082 4.287067 AGCTGGTCCACAAGATTTTCTCTA 59.713 41.667 0.00 0.00 32.41 2.43
4071 5083 5.045286 AGCTGGTCCACAAGATTTTCTCTAT 60.045 40.000 0.00 0.00 32.41 1.98
4072 5084 5.649831 GCTGGTCCACAAGATTTTCTCTATT 59.350 40.000 0.00 0.00 32.41 1.73
4073 5085 6.404074 GCTGGTCCACAAGATTTTCTCTATTG 60.404 42.308 0.00 0.00 32.41 1.90
4074 5086 6.778821 TGGTCCACAAGATTTTCTCTATTGA 58.221 36.000 0.00 0.00 32.41 2.57
4075 5087 6.881065 TGGTCCACAAGATTTTCTCTATTGAG 59.119 38.462 0.00 0.00 41.51 3.02
4076 5088 6.881602 GGTCCACAAGATTTTCTCTATTGAGT 59.118 38.462 4.06 0.00 40.98 3.41
4077 5089 7.148340 GGTCCACAAGATTTTCTCTATTGAGTG 60.148 40.741 4.06 0.00 40.98 3.51
4078 5090 7.604164 GTCCACAAGATTTTCTCTATTGAGTGA 59.396 37.037 4.06 0.00 40.98 3.41
4079 5091 7.604164 TCCACAAGATTTTCTCTATTGAGTGAC 59.396 37.037 4.06 0.00 40.98 3.67
4080 5092 7.388776 CCACAAGATTTTCTCTATTGAGTGACA 59.611 37.037 4.06 0.00 40.98 3.58
4081 5093 8.777413 CACAAGATTTTCTCTATTGAGTGACAA 58.223 33.333 4.06 0.00 40.98 3.18
4082 5094 8.778358 ACAAGATTTTCTCTATTGAGTGACAAC 58.222 33.333 4.06 0.00 40.98 3.32
4083 5095 8.777413 CAAGATTTTCTCTATTGAGTGACAACA 58.223 33.333 4.06 0.00 40.98 3.33
4084 5096 8.908786 AGATTTTCTCTATTGAGTGACAACAA 57.091 30.769 4.06 0.00 41.52 2.83
4085 5097 8.778358 AGATTTTCTCTATTGAGTGACAACAAC 58.222 33.333 4.06 0.00 41.52 3.32
4086 5098 7.857734 TTTTCTCTATTGAGTGACAACAACA 57.142 32.000 4.06 0.00 41.52 3.33
4087 5099 7.857734 TTTCTCTATTGAGTGACAACAACAA 57.142 32.000 4.06 0.00 41.52 2.83
4088 5100 6.844696 TCTCTATTGAGTGACAACAACAAC 57.155 37.500 4.06 0.00 41.52 3.32
4089 5101 6.345298 TCTCTATTGAGTGACAACAACAACA 58.655 36.000 4.06 0.00 41.52 3.33
4090 5102 6.821160 TCTCTATTGAGTGACAACAACAACAA 59.179 34.615 4.06 0.00 41.52 2.83
4091 5103 7.335673 TCTCTATTGAGTGACAACAACAACAAA 59.664 33.333 4.06 0.00 41.52 2.83
4092 5104 7.247728 TCTATTGAGTGACAACAACAACAAAC 58.752 34.615 0.00 0.00 41.52 2.93
4093 5105 4.837896 TGAGTGACAACAACAACAAACA 57.162 36.364 0.00 0.00 0.00 2.83
4094 5106 5.188327 TGAGTGACAACAACAACAAACAA 57.812 34.783 0.00 0.00 0.00 2.83
4095 5107 4.979197 TGAGTGACAACAACAACAAACAAC 59.021 37.500 0.00 0.00 0.00 3.32
4096 5108 4.938080 AGTGACAACAACAACAAACAACA 58.062 34.783 0.00 0.00 0.00 3.33
4097 5109 5.352284 AGTGACAACAACAACAAACAACAA 58.648 33.333 0.00 0.00 0.00 2.83
4098 5110 5.233263 AGTGACAACAACAACAAACAACAAC 59.767 36.000 0.00 0.00 0.00 3.32
4099 5111 5.005779 GTGACAACAACAACAAACAACAACA 59.994 36.000 0.00 0.00 0.00 3.33
4100 5112 5.580691 TGACAACAACAACAAACAACAACAA 59.419 32.000 0.00 0.00 0.00 2.83
4101 5113 6.092122 TGACAACAACAACAAACAACAACAAA 59.908 30.769 0.00 0.00 0.00 2.83
4102 5114 6.481984 ACAACAACAACAAACAACAACAAAG 58.518 32.000 0.00 0.00 0.00 2.77
4103 5115 5.089396 ACAACAACAAACAACAACAAAGC 57.911 34.783 0.00 0.00 0.00 3.51
4104 5116 4.024472 ACAACAACAAACAACAACAAAGCC 60.024 37.500 0.00 0.00 0.00 4.35
4105 5117 4.001618 ACAACAAACAACAACAAAGCCT 57.998 36.364 0.00 0.00 0.00 4.58
4106 5118 3.745458 ACAACAAACAACAACAAAGCCTG 59.255 39.130 0.00 0.00 0.00 4.85
4107 5119 3.951775 ACAAACAACAACAAAGCCTGA 57.048 38.095 0.00 0.00 0.00 3.86
4108 5120 4.264460 ACAAACAACAACAAAGCCTGAA 57.736 36.364 0.00 0.00 0.00 3.02
4109 5121 4.244862 ACAAACAACAACAAAGCCTGAAG 58.755 39.130 0.00 0.00 0.00 3.02
4110 5122 3.525268 AACAACAACAAAGCCTGAAGG 57.475 42.857 0.00 0.00 38.53 3.46
4111 5123 2.733956 ACAACAACAAAGCCTGAAGGA 58.266 42.857 0.00 0.00 37.39 3.36
4112 5124 2.427095 ACAACAACAAAGCCTGAAGGAC 59.573 45.455 0.00 0.00 37.39 3.85
4113 5125 2.689983 CAACAACAAAGCCTGAAGGACT 59.310 45.455 0.00 0.00 37.39 3.85
4114 5126 2.301346 ACAACAAAGCCTGAAGGACTG 58.699 47.619 0.00 0.00 37.39 3.51
4115 5127 1.610522 CAACAAAGCCTGAAGGACTGG 59.389 52.381 0.00 0.00 40.02 4.00
4116 5128 0.111253 ACAAAGCCTGAAGGACTGGG 59.889 55.000 0.00 0.00 37.94 4.45
4117 5129 0.610232 CAAAGCCTGAAGGACTGGGG 60.610 60.000 0.00 0.00 37.94 4.96
4118 5130 1.068352 AAAGCCTGAAGGACTGGGGT 61.068 55.000 0.00 0.00 37.94 4.95
4119 5131 0.178873 AAGCCTGAAGGACTGGGGTA 60.179 55.000 0.00 0.00 37.94 3.69
4120 5132 0.044855 AGCCTGAAGGACTGGGGTAT 59.955 55.000 0.00 0.00 37.94 2.73
4121 5133 0.470341 GCCTGAAGGACTGGGGTATC 59.530 60.000 0.00 0.00 37.94 2.24
4122 5134 1.879575 CCTGAAGGACTGGGGTATCA 58.120 55.000 0.00 0.00 37.39 2.15
4123 5135 1.486726 CCTGAAGGACTGGGGTATCAC 59.513 57.143 0.00 0.00 37.39 3.06
4124 5136 1.486726 CTGAAGGACTGGGGTATCACC 59.513 57.143 0.00 0.00 37.60 4.02
4125 5137 1.203376 TGAAGGACTGGGGTATCACCA 60.203 52.381 0.00 0.00 41.02 4.17
4126 5138 1.913419 GAAGGACTGGGGTATCACCAA 59.087 52.381 0.00 0.00 41.02 3.67
4127 5139 2.053747 AGGACTGGGGTATCACCAAA 57.946 50.000 0.00 0.00 41.02 3.28
4128 5140 1.916181 AGGACTGGGGTATCACCAAAG 59.084 52.381 0.00 0.00 41.02 2.77
4129 5141 1.913419 GGACTGGGGTATCACCAAAGA 59.087 52.381 0.00 0.00 41.02 2.52
4130 5142 2.092914 GGACTGGGGTATCACCAAAGAG 60.093 54.545 0.00 0.00 41.02 2.85
4131 5143 1.282157 ACTGGGGTATCACCAAAGAGC 59.718 52.381 0.00 0.00 41.02 4.09
4132 5144 0.623723 TGGGGTATCACCAAAGAGCC 59.376 55.000 0.00 0.00 41.02 4.70
4133 5145 0.919710 GGGGTATCACCAAAGAGCCT 59.080 55.000 0.00 0.00 41.02 4.58
4134 5146 2.124411 GGGGTATCACCAAAGAGCCTA 58.876 52.381 0.00 0.00 41.02 3.93
4135 5147 2.711547 GGGGTATCACCAAAGAGCCTAT 59.288 50.000 0.00 0.00 41.02 2.57
4136 5148 3.496870 GGGGTATCACCAAAGAGCCTATG 60.497 52.174 0.00 0.00 41.02 2.23
4137 5149 3.496870 GGGTATCACCAAAGAGCCTATGG 60.497 52.174 0.00 0.00 41.02 2.74
4138 5150 3.391296 GGTATCACCAAAGAGCCTATGGA 59.609 47.826 0.00 0.00 38.42 3.41
4139 5151 3.567478 ATCACCAAAGAGCCTATGGAC 57.433 47.619 0.00 0.00 37.66 4.02
4140 5152 2.265367 TCACCAAAGAGCCTATGGACA 58.735 47.619 0.00 0.00 37.66 4.02
4141 5153 2.237143 TCACCAAAGAGCCTATGGACAG 59.763 50.000 0.00 0.00 37.66 3.51
4142 5154 1.561542 ACCAAAGAGCCTATGGACAGG 59.438 52.381 0.00 0.00 37.66 4.00
4143 5155 1.133976 CCAAAGAGCCTATGGACAGGG 60.134 57.143 0.00 0.00 36.27 4.45
4144 5156 1.133976 CAAAGAGCCTATGGACAGGGG 60.134 57.143 0.00 0.00 36.10 4.79
4145 5157 0.044855 AAGAGCCTATGGACAGGGGT 59.955 55.000 0.00 0.00 36.10 4.95
4146 5158 0.941963 AGAGCCTATGGACAGGGGTA 59.058 55.000 0.00 0.00 36.10 3.69
4147 5159 1.509961 AGAGCCTATGGACAGGGGTAT 59.490 52.381 0.00 0.00 36.10 2.73
4148 5160 1.903183 GAGCCTATGGACAGGGGTATC 59.097 57.143 0.00 0.00 36.10 2.24
4149 5161 1.223077 AGCCTATGGACAGGGGTATCA 59.777 52.381 0.00 0.00 36.10 2.15
4150 5162 2.054799 GCCTATGGACAGGGGTATCAA 58.945 52.381 0.00 0.00 36.10 2.57
4151 5163 2.224548 GCCTATGGACAGGGGTATCAAC 60.225 54.545 0.00 0.00 36.10 3.18
4152 5164 3.045634 CCTATGGACAGGGGTATCAACA 58.954 50.000 0.00 0.00 31.47 3.33
4153 5165 3.458118 CCTATGGACAGGGGTATCAACAA 59.542 47.826 0.00 0.00 31.47 2.83
4154 5166 4.080015 CCTATGGACAGGGGTATCAACAAA 60.080 45.833 0.00 0.00 31.47 2.83
4155 5167 3.433306 TGGACAGGGGTATCAACAAAG 57.567 47.619 0.00 0.00 0.00 2.77
4156 5168 2.092323 GGACAGGGGTATCAACAAAGC 58.908 52.381 0.00 0.00 0.00 3.51
4157 5169 2.092323 GACAGGGGTATCAACAAAGCC 58.908 52.381 0.00 0.00 0.00 4.35
4158 5170 1.710809 ACAGGGGTATCAACAAAGCCT 59.289 47.619 0.00 0.00 33.67 4.58
4159 5171 2.916934 ACAGGGGTATCAACAAAGCCTA 59.083 45.455 0.00 0.00 33.67 3.93
4160 5172 3.527665 ACAGGGGTATCAACAAAGCCTAT 59.472 43.478 0.00 0.00 33.67 2.57
4161 5173 3.885297 CAGGGGTATCAACAAAGCCTATG 59.115 47.826 0.00 0.00 33.67 2.23
4162 5174 3.117512 AGGGGTATCAACAAAGCCTATGG 60.118 47.826 0.00 0.00 33.67 2.74
4163 5175 3.117663 GGGGTATCAACAAAGCCTATGGA 60.118 47.826 0.00 0.00 33.67 3.41
4164 5176 3.883489 GGGTATCAACAAAGCCTATGGAC 59.117 47.826 0.00 0.00 0.00 4.02
4165 5177 4.523083 GGTATCAACAAAGCCTATGGACA 58.477 43.478 0.00 0.00 0.00 4.02
4166 5178 4.576463 GGTATCAACAAAGCCTATGGACAG 59.424 45.833 0.00 0.00 0.00 3.51
4167 5179 3.071874 TCAACAAAGCCTATGGACAGG 57.928 47.619 0.00 0.00 38.86 4.00
4168 5180 2.094675 CAACAAAGCCTATGGACAGGG 58.905 52.381 0.00 0.00 36.10 4.45
4169 5181 0.625849 ACAAAGCCTATGGACAGGGG 59.374 55.000 0.00 0.00 36.10 4.79
4170 5182 0.625849 CAAAGCCTATGGACAGGGGT 59.374 55.000 0.00 0.00 36.10 4.95
4171 5183 0.625849 AAAGCCTATGGACAGGGGTG 59.374 55.000 0.00 0.00 36.10 4.61
4172 5184 1.926426 AAGCCTATGGACAGGGGTGC 61.926 60.000 0.00 0.00 36.10 5.01
4173 5185 2.505982 CCTATGGACAGGGGTGCG 59.494 66.667 0.00 0.00 38.35 5.34
4174 5186 2.367202 CCTATGGACAGGGGTGCGT 61.367 63.158 0.00 0.00 38.35 5.24
4175 5187 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
4176 5188 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
4178 5190 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
4179 5191 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
4180 5192 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
4181 5193 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
4182 5194 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
4183 5195 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
4184 5196 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
4185 5197 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
4186 5198 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
4187 5199 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
4188 5200 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
4189 5201 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
4190 5202 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
4191 5203 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
4192 5204 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
4193 5205 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
4194 5206 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
4195 5207 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
4196 5208 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
4197 5209 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
4198 5210 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
4199 5211 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
4200 5212 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
4201 5213 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
4202 5214 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
4203 5215 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
4204 5216 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
4205 5217 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
4206 5218 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
4207 5219 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
4208 5220 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
4209 5221 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
4210 5222 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
4218 5230 3.786101 CCATGAGTTGGTCGCGAG 58.214 61.111 10.24 0.00 40.99 5.03
4219 5231 1.215382 CCATGAGTTGGTCGCGAGA 59.785 57.895 10.24 0.00 40.99 4.04
4220 5232 0.179100 CCATGAGTTGGTCGCGAGAT 60.179 55.000 10.24 0.00 45.19 2.75
4221 5233 1.203928 CATGAGTTGGTCGCGAGATC 58.796 55.000 10.24 2.63 45.19 2.75
4222 5234 1.107114 ATGAGTTGGTCGCGAGATCT 58.893 50.000 10.24 5.84 43.23 2.75
4223 5235 0.888619 TGAGTTGGTCGCGAGATCTT 59.111 50.000 10.24 0.00 43.23 2.40
4224 5236 2.089201 TGAGTTGGTCGCGAGATCTTA 58.911 47.619 10.24 0.00 43.23 2.10
4225 5237 2.688446 TGAGTTGGTCGCGAGATCTTAT 59.312 45.455 10.24 0.00 43.23 1.73
4226 5238 3.046390 GAGTTGGTCGCGAGATCTTATG 58.954 50.000 10.24 0.00 43.23 1.90
4227 5239 2.128035 GTTGGTCGCGAGATCTTATGG 58.872 52.381 10.24 0.00 43.23 2.74
4228 5240 0.673985 TGGTCGCGAGATCTTATGGG 59.326 55.000 10.24 0.00 43.23 4.00
4229 5241 0.674534 GGTCGCGAGATCTTATGGGT 59.325 55.000 10.24 0.00 45.19 4.51
4230 5242 1.068741 GGTCGCGAGATCTTATGGGTT 59.931 52.381 10.24 0.00 45.19 4.11
4231 5243 2.483188 GGTCGCGAGATCTTATGGGTTT 60.483 50.000 10.24 0.00 45.19 3.27
4232 5244 2.795470 GTCGCGAGATCTTATGGGTTTC 59.205 50.000 10.24 0.00 45.19 2.78
4233 5245 2.429250 TCGCGAGATCTTATGGGTTTCA 59.571 45.455 3.71 0.00 33.31 2.69
4234 5246 2.540101 CGCGAGATCTTATGGGTTTCAC 59.460 50.000 0.00 0.00 0.00 3.18
4235 5247 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
4236 5248 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
4237 5249 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
4238 5250 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
4239 5251 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
4240 5252 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
4241 5253 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
4242 5254 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
4243 5255 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
4244 5256 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
4245 5257 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
4246 5258 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
4247 5259 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
4248 5260 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
4249 5261 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
4250 5262 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
4251 5263 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
4252 5264 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
4253 5265 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
4254 5266 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
4255 5267 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
4256 5268 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
4257 5269 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
4258 5270 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
4269 5281 3.977427 CAACTTGTTTGGGTCTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
4270 5282 3.595190 ACTTGTTTGGGTCTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
4271 5283 3.910989 ACTTGTTTGGGTCTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
4272 5284 4.286707 ACTTGTTTGGGTCTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
4273 5285 4.099419 ACTTGTTTGGGTCTAAAGGCTTTG 59.901 41.667 22.32 12.06 0.00 2.77
4274 5286 3.637769 TGTTTGGGTCTAAAGGCTTTGT 58.362 40.909 22.32 0.00 0.00 2.83
4275 5287 4.027437 TGTTTGGGTCTAAAGGCTTTGTT 58.973 39.130 22.32 0.00 0.00 2.83
4276 5288 4.142049 TGTTTGGGTCTAAAGGCTTTGTTG 60.142 41.667 22.32 11.98 0.00 3.33
4277 5289 3.306472 TGGGTCTAAAGGCTTTGTTGT 57.694 42.857 22.32 0.00 0.00 3.32
4278 5290 3.637769 TGGGTCTAAAGGCTTTGTTGTT 58.362 40.909 22.32 0.00 0.00 2.83
4279 5291 3.383185 TGGGTCTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 5.83 0.00 3.33
4346 5554 4.177026 ACTGCGATTTGTGTGATCTAGAC 58.823 43.478 0.00 0.00 0.00 2.59
4510 5718 6.089476 CGTGGTGAGATATATGTGATGACTC 58.911 44.000 0.00 0.00 0.00 3.36
4607 5815 7.372714 TGATTGTTTGTTCATCATTTCAGGAG 58.627 34.615 0.00 0.00 0.00 3.69
4671 5879 8.707796 TGTACCAAATAAATAGGTCCAACAAA 57.292 30.769 0.00 0.00 36.87 2.83
4922 6130 1.141657 AGCAATGACCGCCATCTACAT 59.858 47.619 0.00 0.00 33.53 2.29
5153 6361 6.017109 GTGGAAAGAATAGCACTTTTCAGACA 60.017 38.462 0.00 0.00 41.56 3.41
5198 6406 2.088950 AAAATGCAGCTGTTCATGGC 57.911 45.000 16.64 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.708593 AAAGTTCCCTCCCGCCAACC 62.709 60.000 0.00 0.00 0.00 3.77
1 2 1.228459 AAAGTTCCCTCCCGCCAAC 60.228 57.895 0.00 0.00 0.00 3.77
34 35 2.722201 GGTCGTGCTCGGGGAAGAT 61.722 63.158 8.49 0.00 37.69 2.40
56 57 4.508128 GGCATCGAGGCGTTCCGA 62.508 66.667 16.72 0.00 39.25 4.55
82 83 2.365635 GCAGGGGCTAGGGTCTGA 60.366 66.667 0.00 0.00 36.96 3.27
171 176 4.415332 ACGGTGGCGACAGTAGCG 62.415 66.667 2.27 0.00 44.46 4.26
175 180 4.664677 GCTCACGGTGGCGACAGT 62.665 66.667 8.50 0.00 44.46 3.55
177 182 2.986979 TAGCTCACGGTGGCGACA 60.987 61.111 8.50 0.00 38.70 4.35
179 184 4.129737 GCTAGCTCACGGTGGCGA 62.130 66.667 7.70 6.30 35.46 5.54
214 219 3.503363 CAGCTAGCTTGCGGTGGC 61.503 66.667 16.46 0.00 44.31 5.01
215 220 3.503363 GCAGCTAGCTTGCGGTGG 61.503 66.667 16.46 2.70 41.15 4.61
292 297 3.197790 CCGCCGTGGAGCAAGATG 61.198 66.667 0.00 0.00 42.00 2.90
313 318 2.741985 CGCATCTTGCCCGTGACA 60.742 61.111 0.00 0.00 41.12 3.58
319 324 3.512516 GGAGCACGCATCTTGCCC 61.513 66.667 0.00 0.00 41.12 5.36
338 343 2.025793 AGGATCTCGTCAAGGACAGAGA 60.026 50.000 16.88 16.88 41.85 3.10
366 371 1.700042 AATCCATCCCGACTGCTCCC 61.700 60.000 0.00 0.00 0.00 4.30
372 377 8.940397 AAATTATAATTGAATCCATCCCGACT 57.060 30.769 11.42 0.00 0.00 4.18
391 396 7.555195 CCCCTCTAAAAGTGTCCGTTAAATTAT 59.445 37.037 0.00 0.00 0.00 1.28
415 420 1.555477 CGGCAAAATCGCATAAACCC 58.445 50.000 0.00 0.00 0.00 4.11
424 429 0.808125 TCATTGTCCCGGCAAAATCG 59.192 50.000 0.00 0.00 31.63 3.34
453 458 2.099141 TTCCAGCAGAACAGATTCCG 57.901 50.000 0.00 0.00 35.18 4.30
589 595 2.038387 AAAGGGTATCGCAAATCGCT 57.962 45.000 0.00 0.00 39.08 4.93
591 597 5.619607 CGATTTAAAAGGGTATCGCAAATCG 59.380 40.000 10.83 10.83 43.52 3.34
592 598 6.721321 TCGATTTAAAAGGGTATCGCAAATC 58.279 36.000 0.00 0.00 39.62 2.17
593 599 6.687081 TCGATTTAAAAGGGTATCGCAAAT 57.313 33.333 0.00 0.00 39.62 2.32
661 667 3.636231 CGTGGGGTGAGAAGGCCA 61.636 66.667 5.01 0.00 0.00 5.36
1106 1862 3.701040 ACTGTTTCAACAAGGCTCAACAT 59.299 39.130 0.00 0.00 38.66 2.71
1163 1919 1.651987 AAACGGACCATAGTGCATCG 58.348 50.000 0.00 0.00 33.05 3.84
1181 1937 5.482175 CACCAAATCCCCCAAACAGTATAAA 59.518 40.000 0.00 0.00 0.00 1.40
1248 2228 4.608170 TGGGCCTTCAAATCTAGGAAAT 57.392 40.909 4.53 0.00 33.13 2.17
1257 2237 1.362237 TCCTTCCATGGGCCTTCAAAT 59.638 47.619 13.02 0.00 0.00 2.32
1526 2507 7.734942 TGATAACCTCATTGTGCATCACTATA 58.265 34.615 0.00 0.00 35.11 1.31
1561 2542 7.004555 ACATATTAAGGTCTATCGGCATTGA 57.995 36.000 0.00 0.00 0.00 2.57
1661 2642 3.387962 TGAGCCATGAAGTCCTTCCTAT 58.612 45.455 4.67 0.00 38.77 2.57
1713 2694 9.432982 TTTAAGATAATCCCAACAGCCAATAAT 57.567 29.630 0.00 0.00 0.00 1.28
1716 2697 7.564660 TGATTTAAGATAATCCCAACAGCCAAT 59.435 33.333 0.00 0.00 34.34 3.16
1806 2800 9.905713 TCTACTAGCAAATCTCATGGTAAAAAT 57.094 29.630 0.00 0.00 31.07 1.82
1807 2801 9.905713 ATCTACTAGCAAATCTCATGGTAAAAA 57.094 29.630 0.00 0.00 31.07 1.94
1808 2802 9.330063 CATCTACTAGCAAATCTCATGGTAAAA 57.670 33.333 0.00 0.00 31.07 1.52
1809 2803 8.486210 ACATCTACTAGCAAATCTCATGGTAAA 58.514 33.333 0.00 0.00 31.07 2.01
1810 2804 8.023021 ACATCTACTAGCAAATCTCATGGTAA 57.977 34.615 0.00 0.00 31.07 2.85
1811 2805 7.603180 ACATCTACTAGCAAATCTCATGGTA 57.397 36.000 0.00 0.00 0.00 3.25
1812 2806 6.491714 ACATCTACTAGCAAATCTCATGGT 57.508 37.500 0.00 0.00 0.00 3.55
1813 2807 9.499479 AAATACATCTACTAGCAAATCTCATGG 57.501 33.333 0.00 0.00 0.00 3.66
1816 2810 9.890629 ACAAAATACATCTACTAGCAAATCTCA 57.109 29.630 0.00 0.00 0.00 3.27
2142 3136 5.159273 TGTGTAGGACATAGTGCAAATGA 57.841 39.130 15.32 0.00 0.00 2.57
2566 3560 6.207025 GCATCCTCTTGAAAATCTGATATGCT 59.793 38.462 0.00 0.00 0.00 3.79
3133 4127 1.665679 GACAGTGTATCCACCATTGCG 59.334 52.381 0.00 0.00 42.88 4.85
3500 4494 0.538977 AACAAGCCATGCAGCACTCT 60.539 50.000 0.00 0.00 34.23 3.24
4064 5076 6.821160 TGTTGTTGTTGTCACTCAATAGAGAA 59.179 34.615 0.00 0.00 44.98 2.87
4065 5077 6.345298 TGTTGTTGTTGTCACTCAATAGAGA 58.655 36.000 0.00 0.00 44.98 3.10
4067 5079 6.993786 TTGTTGTTGTTGTCACTCAATAGA 57.006 33.333 0.00 0.00 38.38 1.98
4068 5080 7.026562 TGTTTGTTGTTGTTGTCACTCAATAG 58.973 34.615 0.00 0.00 38.38 1.73
4069 5081 6.914259 TGTTTGTTGTTGTTGTCACTCAATA 58.086 32.000 0.00 0.00 38.38 1.90
4070 5082 5.777802 TGTTTGTTGTTGTTGTCACTCAAT 58.222 33.333 0.00 0.00 38.38 2.57
4071 5083 5.188327 TGTTTGTTGTTGTTGTCACTCAA 57.812 34.783 0.00 0.00 0.00 3.02
4072 5084 4.837896 TGTTTGTTGTTGTTGTCACTCA 57.162 36.364 0.00 0.00 0.00 3.41
4073 5085 4.979197 TGTTGTTTGTTGTTGTTGTCACTC 59.021 37.500 0.00 0.00 0.00 3.51
4074 5086 4.938080 TGTTGTTTGTTGTTGTTGTCACT 58.062 34.783 0.00 0.00 0.00 3.41
4075 5087 5.005779 TGTTGTTGTTTGTTGTTGTTGTCAC 59.994 36.000 0.00 0.00 0.00 3.67
4076 5088 5.109210 TGTTGTTGTTTGTTGTTGTTGTCA 58.891 33.333 0.00 0.00 0.00 3.58
4077 5089 5.643339 TGTTGTTGTTTGTTGTTGTTGTC 57.357 34.783 0.00 0.00 0.00 3.18
4078 5090 6.422776 TTTGTTGTTGTTTGTTGTTGTTGT 57.577 29.167 0.00 0.00 0.00 3.32
4079 5091 5.394904 GCTTTGTTGTTGTTTGTTGTTGTTG 59.605 36.000 0.00 0.00 0.00 3.33
4080 5092 5.504830 GGCTTTGTTGTTGTTTGTTGTTGTT 60.505 36.000 0.00 0.00 0.00 2.83
4081 5093 4.024472 GGCTTTGTTGTTGTTTGTTGTTGT 60.024 37.500 0.00 0.00 0.00 3.32
4082 5094 4.213059 AGGCTTTGTTGTTGTTTGTTGTTG 59.787 37.500 0.00 0.00 0.00 3.33
4083 5095 4.213059 CAGGCTTTGTTGTTGTTTGTTGTT 59.787 37.500 0.00 0.00 0.00 2.83
4084 5096 3.745458 CAGGCTTTGTTGTTGTTTGTTGT 59.255 39.130 0.00 0.00 0.00 3.32
4085 5097 3.993081 TCAGGCTTTGTTGTTGTTTGTTG 59.007 39.130 0.00 0.00 0.00 3.33
4086 5098 4.264460 TCAGGCTTTGTTGTTGTTTGTT 57.736 36.364 0.00 0.00 0.00 2.83
4087 5099 3.951775 TCAGGCTTTGTTGTTGTTTGT 57.048 38.095 0.00 0.00 0.00 2.83
4088 5100 3.618150 CCTTCAGGCTTTGTTGTTGTTTG 59.382 43.478 0.00 0.00 0.00 2.93
4089 5101 3.513515 TCCTTCAGGCTTTGTTGTTGTTT 59.486 39.130 0.00 0.00 34.44 2.83
4090 5102 3.096092 TCCTTCAGGCTTTGTTGTTGTT 58.904 40.909 0.00 0.00 34.44 2.83
4091 5103 2.427095 GTCCTTCAGGCTTTGTTGTTGT 59.573 45.455 0.00 0.00 34.44 3.32
4092 5104 2.689983 AGTCCTTCAGGCTTTGTTGTTG 59.310 45.455 0.00 0.00 34.44 3.33
4093 5105 2.689983 CAGTCCTTCAGGCTTTGTTGTT 59.310 45.455 0.00 0.00 34.44 2.83
4094 5106 2.301346 CAGTCCTTCAGGCTTTGTTGT 58.699 47.619 0.00 0.00 34.44 3.32
4095 5107 1.610522 CCAGTCCTTCAGGCTTTGTTG 59.389 52.381 0.00 0.00 34.44 3.33
4096 5108 1.479389 CCCAGTCCTTCAGGCTTTGTT 60.479 52.381 0.00 0.00 34.44 2.83
4097 5109 0.111253 CCCAGTCCTTCAGGCTTTGT 59.889 55.000 0.00 0.00 34.44 2.83
4098 5110 0.610232 CCCCAGTCCTTCAGGCTTTG 60.610 60.000 0.00 0.00 34.44 2.77
4099 5111 1.068352 ACCCCAGTCCTTCAGGCTTT 61.068 55.000 0.00 0.00 34.44 3.51
4100 5112 0.178873 TACCCCAGTCCTTCAGGCTT 60.179 55.000 0.00 0.00 34.44 4.35
4101 5113 0.044855 ATACCCCAGTCCTTCAGGCT 59.955 55.000 0.00 0.00 34.44 4.58
4102 5114 0.470341 GATACCCCAGTCCTTCAGGC 59.530 60.000 0.00 0.00 34.44 4.85
4103 5115 1.486726 GTGATACCCCAGTCCTTCAGG 59.513 57.143 0.00 0.00 0.00 3.86
4104 5116 1.486726 GGTGATACCCCAGTCCTTCAG 59.513 57.143 0.00 0.00 30.04 3.02
4105 5117 1.203376 TGGTGATACCCCAGTCCTTCA 60.203 52.381 0.00 0.00 37.50 3.02
4106 5118 1.580059 TGGTGATACCCCAGTCCTTC 58.420 55.000 0.00 0.00 37.50 3.46
4107 5119 2.053747 TTGGTGATACCCCAGTCCTT 57.946 50.000 0.00 0.00 37.50 3.36
4108 5120 1.916181 CTTTGGTGATACCCCAGTCCT 59.084 52.381 0.00 0.00 37.50 3.85
4109 5121 1.913419 TCTTTGGTGATACCCCAGTCC 59.087 52.381 0.00 0.00 37.50 3.85
4110 5122 2.681097 GCTCTTTGGTGATACCCCAGTC 60.681 54.545 0.00 0.00 37.50 3.51
4111 5123 1.282157 GCTCTTTGGTGATACCCCAGT 59.718 52.381 0.00 0.00 37.50 4.00
4112 5124 1.408822 GGCTCTTTGGTGATACCCCAG 60.409 57.143 0.00 0.00 37.50 4.45
4113 5125 0.623723 GGCTCTTTGGTGATACCCCA 59.376 55.000 0.00 0.00 37.50 4.96
4114 5126 0.919710 AGGCTCTTTGGTGATACCCC 59.080 55.000 0.00 0.00 37.50 4.95
4115 5127 3.496870 CCATAGGCTCTTTGGTGATACCC 60.497 52.174 0.00 0.00 37.50 3.69
4116 5128 3.391296 TCCATAGGCTCTTTGGTGATACC 59.609 47.826 9.94 0.00 39.22 2.73
4117 5129 4.141711 TGTCCATAGGCTCTTTGGTGATAC 60.142 45.833 9.94 3.48 34.84 2.24
4118 5130 4.037222 TGTCCATAGGCTCTTTGGTGATA 58.963 43.478 9.94 0.00 34.84 2.15
4119 5131 2.846206 TGTCCATAGGCTCTTTGGTGAT 59.154 45.455 9.94 0.00 34.84 3.06
4120 5132 2.237143 CTGTCCATAGGCTCTTTGGTGA 59.763 50.000 9.94 0.20 34.84 4.02
4121 5133 2.636830 CTGTCCATAGGCTCTTTGGTG 58.363 52.381 9.94 1.27 34.84 4.17
4122 5134 1.561542 CCTGTCCATAGGCTCTTTGGT 59.438 52.381 9.94 0.00 34.84 3.67
4123 5135 1.133976 CCCTGTCCATAGGCTCTTTGG 60.134 57.143 0.00 0.00 36.47 3.28
4124 5136 1.133976 CCCCTGTCCATAGGCTCTTTG 60.134 57.143 0.00 0.00 36.47 2.77
4125 5137 1.216990 CCCCTGTCCATAGGCTCTTT 58.783 55.000 0.00 0.00 36.47 2.52
4126 5138 0.044855 ACCCCTGTCCATAGGCTCTT 59.955 55.000 0.00 0.00 36.47 2.85
4127 5139 0.941963 TACCCCTGTCCATAGGCTCT 59.058 55.000 0.00 0.00 36.47 4.09
4128 5140 1.903183 GATACCCCTGTCCATAGGCTC 59.097 57.143 0.00 0.00 36.47 4.70
4129 5141 1.223077 TGATACCCCTGTCCATAGGCT 59.777 52.381 0.00 0.00 36.47 4.58
4130 5142 1.729586 TGATACCCCTGTCCATAGGC 58.270 55.000 0.00 0.00 36.47 3.93
4131 5143 3.045634 TGTTGATACCCCTGTCCATAGG 58.954 50.000 0.00 0.00 37.59 2.57
4132 5144 4.771114 TTGTTGATACCCCTGTCCATAG 57.229 45.455 0.00 0.00 0.00 2.23
4133 5145 4.627741 GCTTTGTTGATACCCCTGTCCATA 60.628 45.833 0.00 0.00 0.00 2.74
4134 5146 3.877735 GCTTTGTTGATACCCCTGTCCAT 60.878 47.826 0.00 0.00 0.00 3.41
4135 5147 2.554344 GCTTTGTTGATACCCCTGTCCA 60.554 50.000 0.00 0.00 0.00 4.02
4136 5148 2.092323 GCTTTGTTGATACCCCTGTCC 58.908 52.381 0.00 0.00 0.00 4.02
4137 5149 2.092323 GGCTTTGTTGATACCCCTGTC 58.908 52.381 0.00 0.00 0.00 3.51
4138 5150 1.710809 AGGCTTTGTTGATACCCCTGT 59.289 47.619 0.00 0.00 0.00 4.00
4139 5151 2.514458 AGGCTTTGTTGATACCCCTG 57.486 50.000 0.00 0.00 0.00 4.45
4140 5152 3.117512 CCATAGGCTTTGTTGATACCCCT 60.118 47.826 4.26 0.00 0.00 4.79
4141 5153 3.117663 TCCATAGGCTTTGTTGATACCCC 60.118 47.826 4.26 0.00 0.00 4.95
4142 5154 3.883489 GTCCATAGGCTTTGTTGATACCC 59.117 47.826 4.26 0.00 0.00 3.69
4143 5155 4.523083 TGTCCATAGGCTTTGTTGATACC 58.477 43.478 4.26 0.00 0.00 2.73
4144 5156 4.576463 CCTGTCCATAGGCTTTGTTGATAC 59.424 45.833 4.26 0.00 0.00 2.24
4145 5157 4.385199 CCCTGTCCATAGGCTTTGTTGATA 60.385 45.833 4.26 0.00 36.47 2.15
4146 5158 3.624777 CCTGTCCATAGGCTTTGTTGAT 58.375 45.455 4.26 0.00 0.00 2.57
4147 5159 2.290896 CCCTGTCCATAGGCTTTGTTGA 60.291 50.000 4.26 0.00 36.47 3.18
4148 5160 2.094675 CCCTGTCCATAGGCTTTGTTG 58.905 52.381 4.26 0.00 36.47 3.33
4149 5161 1.005924 CCCCTGTCCATAGGCTTTGTT 59.994 52.381 4.26 0.00 36.47 2.83
4150 5162 0.625849 CCCCTGTCCATAGGCTTTGT 59.374 55.000 4.26 0.00 36.47 2.83
4151 5163 0.625849 ACCCCTGTCCATAGGCTTTG 59.374 55.000 0.00 0.00 36.47 2.77
4152 5164 0.625849 CACCCCTGTCCATAGGCTTT 59.374 55.000 0.00 0.00 36.47 3.51
4153 5165 1.926426 GCACCCCTGTCCATAGGCTT 61.926 60.000 0.00 0.00 36.47 4.35
4154 5166 2.378634 GCACCCCTGTCCATAGGCT 61.379 63.158 0.00 0.00 36.47 4.58
4155 5167 2.193248 GCACCCCTGTCCATAGGC 59.807 66.667 0.00 0.00 36.47 3.93
4156 5168 2.367202 ACGCACCCCTGTCCATAGG 61.367 63.158 0.00 0.00 37.59 2.57
4157 5169 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
4158 5170 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
4159 5171 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
4161 5173 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
4162 5174 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
4163 5175 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
4164 5176 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
4165 5177 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
4166 5178 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
4167 5179 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
4168 5180 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
4169 5181 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
4170 5182 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
4171 5183 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
4172 5184 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
4173 5185 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
4174 5186 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
4175 5187 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
4176 5188 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
4177 5189 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
4178 5190 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
4179 5191 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
4180 5192 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
4181 5193 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
4182 5194 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
4183 5195 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
4184 5196 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
4185 5197 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
4186 5198 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
4187 5199 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
4188 5200 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
4189 5201 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
4190 5202 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
4191 5203 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
4192 5204 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
4193 5205 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
4194 5206 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
4202 5214 1.202348 AGATCTCGCGACCAACTCATG 60.202 52.381 3.71 0.00 0.00 3.07
4203 5215 1.107114 AGATCTCGCGACCAACTCAT 58.893 50.000 3.71 0.00 0.00 2.90
4204 5216 0.888619 AAGATCTCGCGACCAACTCA 59.111 50.000 3.71 0.00 0.00 3.41
4205 5217 2.846039 TAAGATCTCGCGACCAACTC 57.154 50.000 3.71 0.00 0.00 3.01
4206 5218 2.223829 CCATAAGATCTCGCGACCAACT 60.224 50.000 3.71 0.00 0.00 3.16
4207 5219 2.128035 CCATAAGATCTCGCGACCAAC 58.872 52.381 3.71 0.00 0.00 3.77
4208 5220 1.068588 CCCATAAGATCTCGCGACCAA 59.931 52.381 3.71 0.00 0.00 3.67
4209 5221 0.673985 CCCATAAGATCTCGCGACCA 59.326 55.000 3.71 0.00 0.00 4.02
4210 5222 0.674534 ACCCATAAGATCTCGCGACC 59.325 55.000 3.71 0.00 0.00 4.79
4211 5223 2.510768 AACCCATAAGATCTCGCGAC 57.489 50.000 3.71 0.00 0.00 5.19
4212 5224 2.429250 TGAAACCCATAAGATCTCGCGA 59.571 45.455 9.26 9.26 0.00 5.87
4213 5225 2.540101 GTGAAACCCATAAGATCTCGCG 59.460 50.000 0.00 0.00 0.00 5.87
4228 5240 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
4229 5241 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
4230 5242 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
4231 5243 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
4232 5244 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
4233 5245 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
4234 5246 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
4235 5247 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
4236 5248 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
4237 5249 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
4238 5250 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
4239 5251 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
4248 5260 3.636764 AGCCTTTAGACCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
4249 5261 3.910989 AGCCTTTAGACCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
4250 5262 3.595190 AGCCTTTAGACCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
4251 5263 4.099419 ACAAAGCCTTTAGACCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
4252 5264 4.027437 ACAAAGCCTTTAGACCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
4253 5265 3.637769 ACAAAGCCTTTAGACCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
4254 5266 4.142026 ACAACAAAGCCTTTAGACCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
4255 5267 4.027437 ACAACAAAGCCTTTAGACCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
4256 5268 3.637769 ACAACAAAGCCTTTAGACCCAA 58.362 40.909 0.00 0.00 0.00 4.12
4257 5269 3.306472 ACAACAAAGCCTTTAGACCCA 57.694 42.857 0.00 0.00 0.00 4.51
4258 5270 3.383505 ACAACAACAAAGCCTTTAGACCC 59.616 43.478 0.00 0.00 0.00 4.46
4259 5271 4.649088 ACAACAACAAAGCCTTTAGACC 57.351 40.909 0.00 0.00 0.00 3.85
4260 5272 5.891451 AGAACAACAACAAAGCCTTTAGAC 58.109 37.500 0.00 0.00 0.00 2.59
4261 5273 5.885912 AGAGAACAACAACAAAGCCTTTAGA 59.114 36.000 0.00 0.00 0.00 2.10
4262 5274 6.136541 AGAGAACAACAACAAAGCCTTTAG 57.863 37.500 0.00 0.00 0.00 1.85
4263 5275 7.817418 ATAGAGAACAACAACAAAGCCTTTA 57.183 32.000 0.00 0.00 0.00 1.85
4264 5276 6.715347 ATAGAGAACAACAACAAAGCCTTT 57.285 33.333 0.00 0.00 0.00 3.11
4265 5277 6.321181 TCAATAGAGAACAACAACAAAGCCTT 59.679 34.615 0.00 0.00 0.00 4.35
4266 5278 5.827797 TCAATAGAGAACAACAACAAAGCCT 59.172 36.000 0.00 0.00 0.00 4.58
4267 5279 6.072112 TCAATAGAGAACAACAACAAAGCC 57.928 37.500 0.00 0.00 0.00 4.35
4268 5280 6.634436 CACTCAATAGAGAACAACAACAAAGC 59.366 38.462 0.00 0.00 44.98 3.51
4269 5281 7.852945 GTCACTCAATAGAGAACAACAACAAAG 59.147 37.037 0.00 0.00 44.98 2.77
4270 5282 7.335673 TGTCACTCAATAGAGAACAACAACAAA 59.664 33.333 0.00 0.00 44.98 2.83
4271 5283 6.821160 TGTCACTCAATAGAGAACAACAACAA 59.179 34.615 0.00 0.00 44.98 2.83
4272 5284 6.257849 GTGTCACTCAATAGAGAACAACAACA 59.742 38.462 0.00 0.00 44.98 3.33
4273 5285 6.257849 TGTGTCACTCAATAGAGAACAACAAC 59.742 38.462 4.27 0.00 44.98 3.32
4274 5286 6.257849 GTGTGTCACTCAATAGAGAACAACAA 59.742 38.462 4.27 0.00 44.98 2.83
4275 5287 5.753438 GTGTGTCACTCAATAGAGAACAACA 59.247 40.000 4.27 3.11 44.98 3.33
4276 5288 5.986135 AGTGTGTCACTCAATAGAGAACAAC 59.014 40.000 4.27 5.34 41.21 3.32
4277 5289 6.161855 AGTGTGTCACTCAATAGAGAACAA 57.838 37.500 4.27 0.00 41.21 2.83
4278 5290 5.791336 AGTGTGTCACTCAATAGAGAACA 57.209 39.130 4.27 1.22 41.21 3.18
4279 5291 6.216569 TGAAGTGTGTCACTCAATAGAGAAC 58.783 40.000 4.27 0.00 44.62 3.01
4346 5554 7.221452 GCACAAATTTAGCAGATAATCTGTTGG 59.779 37.037 9.26 0.00 45.94 3.77
4510 5718 6.790285 ATGTAACTAAACTAACAACGGTGG 57.210 37.500 4.97 0.00 0.00 4.61
4607 5815 6.929606 AGAATATTCAACGCCACCTCTATTAC 59.070 38.462 17.56 0.00 0.00 1.89
4671 5879 4.740902 AGTAGAAAAGGGCATCAAAGGTT 58.259 39.130 0.00 0.00 0.00 3.50
4922 6130 3.197549 TCGATGATTCAACTGATCCACCA 59.802 43.478 0.00 0.00 0.00 4.17
5153 6361 9.716556 TTTACCTCTCTCTCAGGATTTATAAGT 57.283 33.333 0.00 0.00 34.75 2.24
5183 6391 0.609681 TGATGCCATGAACAGCTGCA 60.610 50.000 15.27 4.85 36.23 4.41
5366 6574 9.443283 GAAATATAACTTGTGCTCTGCATTTAG 57.557 33.333 0.00 0.00 41.91 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.