Multiple sequence alignment - TraesCS4A01G117100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G117100 chr4A 100.000 4022 0 0 1 4022 142795133 142799154 0.000000e+00 7428.0
1 TraesCS4A01G117100 chr4A 91.525 59 3 1 3804 3860 691716945 691716887 3.330000e-11 80.5
2 TraesCS4A01G117100 chr4B 94.751 3467 95 22 1 3431 407411499 407408084 0.000000e+00 5313.0
3 TraesCS4A01G117100 chr4B 93.252 326 22 0 3429 3754 37726350 37726675 7.820000e-132 481.0
4 TraesCS4A01G117100 chr4B 93.009 329 23 0 3426 3754 363317549 363317877 7.820000e-132 481.0
5 TraesCS4A01G117100 chr4B 92.308 156 7 2 3867 4022 407408021 407407871 2.430000e-52 217.0
6 TraesCS4A01G117100 chr4D 95.553 3081 90 21 381 3431 327847820 327844757 0.000000e+00 4887.0
7 TraesCS4A01G117100 chr4D 84.983 293 28 9 109 396 327848118 327847837 2.370000e-72 283.0
8 TraesCS4A01G117100 chr4D 92.308 156 11 1 3867 4022 327844694 327844540 1.880000e-53 220.0
9 TraesCS4A01G117100 chr5A 94.495 327 18 0 3429 3755 228892252 228892578 4.640000e-139 505.0
10 TraesCS4A01G117100 chr5A 93.865 326 20 0 3429 3754 374885837 374886162 3.610000e-135 492.0
11 TraesCS4A01G117100 chr5A 93.558 326 20 1 3429 3754 40613588 40613912 6.040000e-133 484.0
12 TraesCS4A01G117100 chr7B 93.865 326 20 0 3429 3754 658058933 658058608 3.610000e-135 492.0
13 TraesCS4A01G117100 chr7B 93.558 326 21 0 3429 3754 680209995 680209670 1.680000e-133 486.0
14 TraesCS4A01G117100 chr6A 93.789 322 20 0 3431 3752 474328745 474329066 6.040000e-133 484.0
15 TraesCS4A01G117100 chr6A 89.062 64 3 3 3806 3866 572404514 572404452 4.310000e-10 76.8
16 TraesCS4A01G117100 chr6B 93.538 325 20 1 3431 3755 377824625 377824948 2.170000e-132 483.0
17 TraesCS4A01G117100 chr2A 75.841 803 169 16 1669 2454 46313833 46314627 6.310000e-103 385.0
18 TraesCS4A01G117100 chr2B 72.145 1296 315 29 1672 2929 68592775 68591488 6.400000e-93 351.0
19 TraesCS4A01G117100 chr2B 94.000 50 1 1 3813 3860 766523840 766523791 1.550000e-09 75.0
20 TraesCS4A01G117100 chr2D 71.957 1298 317 31 1672 2929 43899097 43897807 1.790000e-88 337.0
21 TraesCS4A01G117100 chr2D 89.062 64 4 3 3813 3874 549917725 549917787 4.310000e-10 76.8
22 TraesCS4A01G117100 chr1A 94.545 55 0 3 3808 3860 237513208 237513261 9.260000e-12 82.4
23 TraesCS4A01G117100 chr3A 96.000 50 0 2 3813 3860 424454773 424454724 3.330000e-11 80.5
24 TraesCS4A01G117100 chr7D 91.379 58 3 1 3805 3860 10055371 10055428 1.200000e-10 78.7
25 TraesCS4A01G117100 chr5D 90.000 60 2 4 3803 3860 4362113 4362170 1.550000e-09 75.0
26 TraesCS4A01G117100 chr5D 86.765 68 5 3 3802 3867 528401405 528401470 5.580000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G117100 chr4A 142795133 142799154 4021 False 7428.000000 7428 100.0000 1 4022 1 chr4A.!!$F1 4021
1 TraesCS4A01G117100 chr4B 407407871 407411499 3628 True 2765.000000 5313 93.5295 1 4022 2 chr4B.!!$R1 4021
2 TraesCS4A01G117100 chr4D 327844540 327848118 3578 True 1796.666667 4887 90.9480 109 4022 3 chr4D.!!$R1 3913
3 TraesCS4A01G117100 chr2A 46313833 46314627 794 False 385.000000 385 75.8410 1669 2454 1 chr2A.!!$F1 785
4 TraesCS4A01G117100 chr2B 68591488 68592775 1287 True 351.000000 351 72.1450 1672 2929 1 chr2B.!!$R1 1257
5 TraesCS4A01G117100 chr2D 43897807 43899097 1290 True 337.000000 337 71.9570 1672 2929 1 chr2D.!!$R1 1257

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
293 295 0.571661 TACAAACGTGTTGCGACGAC 59.428 50.0 9.42 3.67 44.77 4.34 F
1151 1244 0.471617 GGCATCCAGCTCACCTACAT 59.528 55.0 0.00 0.00 44.79 2.29 F
1365 1458 0.902531 CCTACAACACCACCGAGGAT 59.097 55.0 0.00 0.00 41.22 3.24 F
2046 2139 0.920763 TCCTGCCCAAGTCCATGGAT 60.921 55.0 19.62 0.00 43.54 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 1905 0.389426 AGTAAATGAACTCGCCGCGT 60.389 50.000 13.39 0.00 0.00 6.01 R
2793 2919 0.828762 ATTGCTGCTTTCCTGGCACA 60.829 50.000 0.00 0.00 35.71 4.57 R
2850 2979 1.405933 CCATCTCCAGCGACAACATCA 60.406 52.381 0.00 0.00 0.00 3.07 R
3757 3887 0.034059 ACTGAAACTCCGGTGCAGAG 59.966 55.000 14.14 0.14 34.71 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 2.162681 GGTGGACATGCACTTTTAGCT 58.837 47.619 3.43 0.00 0.00 3.32
28 29 3.244526 TGGACATGCACTTTTAGCTCTCA 60.245 43.478 0.00 0.00 0.00 3.27
29 30 3.126000 GGACATGCACTTTTAGCTCTCAC 59.874 47.826 0.00 0.00 0.00 3.51
76 77 1.872313 CGATCTCGTCTACCCTACCAC 59.128 57.143 0.00 0.00 34.11 4.16
117 118 1.542108 GCTCCCACACCTATCATGCTC 60.542 57.143 0.00 0.00 0.00 4.26
122 123 2.045524 CACACCTATCATGCTCCTCCT 58.954 52.381 0.00 0.00 0.00 3.69
133 134 3.619900 TGCTCCTCCTACACCTATCAT 57.380 47.619 0.00 0.00 0.00 2.45
182 184 3.190327 CGTTGGCTCAAACCATACATGAA 59.810 43.478 0.00 0.00 40.13 2.57
216 218 3.428045 CGGAAGCATCCTGAAATTTGACC 60.428 47.826 6.39 0.00 44.17 4.02
224 226 3.323403 TCCTGAAATTTGACCCGCATTTT 59.677 39.130 0.00 0.00 0.00 1.82
266 268 6.274157 ACTCACAAAAGAGTATCGTCATCT 57.726 37.500 0.00 0.00 46.52 2.90
293 295 0.571661 TACAAACGTGTTGCGACGAC 59.428 50.000 9.42 3.67 44.77 4.34
295 297 1.810441 AAACGTGTTGCGACGACCA 60.810 52.632 9.42 0.00 44.77 4.02
303 305 1.126113 GTTGCGACGACCAGTATGTTG 59.874 52.381 0.00 0.00 0.00 3.33
316 318 6.816136 ACCAGTATGTTGACGATCAATCATA 58.184 36.000 0.00 4.63 38.79 2.15
400 441 1.300233 GCGCTCTCCAATCTACGGG 60.300 63.158 0.00 0.00 0.00 5.28
437 489 1.407989 CCCTGATCAGCTCTGGTTTCC 60.408 57.143 17.76 0.00 40.48 3.13
527 589 4.320456 CCGAGCCATCCATCCCCG 62.320 72.222 0.00 0.00 0.00 5.73
594 656 1.287815 CCTACCGTTCGCACAGTCA 59.712 57.895 0.00 0.00 0.00 3.41
703 776 3.213402 CCCTCTCCTCGACCTCGC 61.213 72.222 0.00 0.00 39.60 5.03
778 854 2.372172 AGAAAAACCCGTCCATCTCTGT 59.628 45.455 0.00 0.00 0.00 3.41
790 866 2.234908 CCATCTCTGTCTTCCCGAAAGT 59.765 50.000 0.00 0.00 36.31 2.66
791 867 3.516615 CATCTCTGTCTTCCCGAAAGTC 58.483 50.000 0.00 0.00 36.31 3.01
792 868 1.540267 TCTCTGTCTTCCCGAAAGTCG 59.460 52.381 0.00 0.00 40.07 4.18
793 869 1.540267 CTCTGTCTTCCCGAAAGTCGA 59.460 52.381 0.00 0.00 43.74 4.20
888 964 1.231928 GTTCAAACCCACCACCCCT 59.768 57.895 0.00 0.00 0.00 4.79
899 986 1.305381 CCACCCCTCTCGTCTTCCT 60.305 63.158 0.00 0.00 0.00 3.36
1151 1244 0.471617 GGCATCCAGCTCACCTACAT 59.528 55.000 0.00 0.00 44.79 2.29
1365 1458 0.902531 CCTACAACACCACCGAGGAT 59.097 55.000 0.00 0.00 41.22 3.24
1416 1509 1.979693 GCAGACGGACCTCCTCACT 60.980 63.158 0.00 0.00 0.00 3.41
1812 1905 3.680786 CTGTCGTGGGAGTGGCGA 61.681 66.667 0.00 0.00 0.00 5.54
2046 2139 0.920763 TCCTGCCCAAGTCCATGGAT 60.921 55.000 19.62 0.00 43.54 3.41
2454 2571 4.629115 GCGCTGCTTGTGCCGTTT 62.629 61.111 0.00 0.00 45.73 3.60
2457 2574 1.658409 GCTGCTTGTGCCGTTTGAC 60.658 57.895 0.00 0.00 38.71 3.18
2472 2589 3.062369 CGTTTGACAACCGTACACAGAAA 59.938 43.478 0.00 0.00 0.00 2.52
2478 2595 2.319136 ACCGTACACAGAAAGCACAA 57.681 45.000 0.00 0.00 0.00 3.33
2566 2686 1.402968 GCATCAATTGGCACGTCTCAT 59.597 47.619 5.42 0.00 0.00 2.90
2598 2718 4.021925 GGCTGGAGTGCTCGGGTT 62.022 66.667 0.00 0.00 0.00 4.11
2793 2919 0.974010 TGAGCGGGTCGGATTACCTT 60.974 55.000 2.41 0.00 39.65 3.50
2850 2979 4.472833 ACCAAGAAGCTGACTCCTGATATT 59.527 41.667 0.00 0.00 0.00 1.28
2946 3075 1.813513 CGCTCAAGAGTGGTGGATTT 58.186 50.000 2.75 0.00 35.41 2.17
2992 3121 0.112995 TTGGGTCTTGCTCATGGCTT 59.887 50.000 7.54 0.00 42.39 4.35
3072 3201 1.340405 CCTTCAGGTGGTTCCATCAGG 60.340 57.143 4.86 0.00 39.02 3.86
3197 3327 3.117452 ATGCCAGGGAGCTAGCTGC 62.117 63.158 26.66 26.66 43.29 5.25
3297 3427 4.880759 TGTTGGTGCAATTGTAGGAAATG 58.119 39.130 7.40 0.00 0.00 2.32
3316 3446 3.173668 TGTCTCGTGTTTAGCTTGTGT 57.826 42.857 0.00 0.00 0.00 3.72
3376 3506 2.349590 TGCTCATCAAACCATGTCTCG 58.650 47.619 0.00 0.00 0.00 4.04
3405 3535 1.076187 TCTGAAGCTGTCCTCTGAGGA 59.924 52.381 22.30 22.30 43.43 3.71
3437 3567 2.005971 GTGGAACTAGTTAGGGCGTG 57.994 55.000 8.42 0.00 0.00 5.34
3438 3568 1.274447 GTGGAACTAGTTAGGGCGTGT 59.726 52.381 8.42 0.00 0.00 4.49
3439 3569 2.493278 GTGGAACTAGTTAGGGCGTGTA 59.507 50.000 8.42 0.00 0.00 2.90
3440 3570 2.493278 TGGAACTAGTTAGGGCGTGTAC 59.507 50.000 8.42 0.00 0.00 2.90
3441 3571 2.493278 GGAACTAGTTAGGGCGTGTACA 59.507 50.000 8.42 0.00 0.00 2.90
3442 3572 3.056607 GGAACTAGTTAGGGCGTGTACAA 60.057 47.826 8.42 0.00 0.00 2.41
3443 3573 4.382362 GGAACTAGTTAGGGCGTGTACAAT 60.382 45.833 8.42 0.00 0.00 2.71
3444 3574 4.119442 ACTAGTTAGGGCGTGTACAATG 57.881 45.455 0.00 0.00 0.00 2.82
3445 3575 1.734163 AGTTAGGGCGTGTACAATGC 58.266 50.000 11.84 11.84 40.36 3.56
3446 3576 1.002659 AGTTAGGGCGTGTACAATGCA 59.997 47.619 19.51 0.00 43.13 3.96
3447 3577 2.014128 GTTAGGGCGTGTACAATGCAT 58.986 47.619 19.51 11.69 43.13 3.96
3448 3578 3.118555 AGTTAGGGCGTGTACAATGCATA 60.119 43.478 19.51 10.89 43.13 3.14
3449 3579 1.953559 AGGGCGTGTACAATGCATAG 58.046 50.000 19.51 0.00 43.13 2.23
3450 3580 0.307760 GGGCGTGTACAATGCATAGC 59.692 55.000 19.51 7.67 43.13 2.97
3451 3581 0.307760 GGCGTGTACAATGCATAGCC 59.692 55.000 19.51 11.97 43.13 3.93
3452 3582 1.299541 GCGTGTACAATGCATAGCCT 58.700 50.000 14.62 0.00 40.81 4.58
3453 3583 1.261619 GCGTGTACAATGCATAGCCTC 59.738 52.381 14.62 0.00 40.81 4.70
3454 3584 2.549926 CGTGTACAATGCATAGCCTCA 58.450 47.619 0.00 0.00 0.00 3.86
3455 3585 2.935849 CGTGTACAATGCATAGCCTCAA 59.064 45.455 0.00 0.00 0.00 3.02
3456 3586 3.001634 CGTGTACAATGCATAGCCTCAAG 59.998 47.826 0.00 0.00 0.00 3.02
3457 3587 4.191544 GTGTACAATGCATAGCCTCAAGA 58.808 43.478 0.00 0.00 0.00 3.02
3458 3588 4.818546 GTGTACAATGCATAGCCTCAAGAT 59.181 41.667 0.00 0.00 0.00 2.40
3459 3589 4.818005 TGTACAATGCATAGCCTCAAGATG 59.182 41.667 0.00 0.00 0.00 2.90
3460 3590 4.160642 ACAATGCATAGCCTCAAGATGA 57.839 40.909 0.00 0.00 0.00 2.92
3461 3591 4.726583 ACAATGCATAGCCTCAAGATGAT 58.273 39.130 0.00 0.00 0.00 2.45
3462 3592 4.519350 ACAATGCATAGCCTCAAGATGATG 59.481 41.667 0.00 0.00 0.00 3.07
3463 3593 2.501261 TGCATAGCCTCAAGATGATGC 58.499 47.619 0.00 0.00 38.13 3.91
3464 3594 1.811359 GCATAGCCTCAAGATGATGCC 59.189 52.381 4.35 0.00 38.54 4.40
3465 3595 2.552591 GCATAGCCTCAAGATGATGCCT 60.553 50.000 4.35 0.00 38.54 4.75
3466 3596 3.336468 CATAGCCTCAAGATGATGCCTC 58.664 50.000 4.35 0.00 38.54 4.70
3467 3597 0.106335 AGCCTCAAGATGATGCCTCG 59.894 55.000 4.35 0.00 38.54 4.63
3468 3598 1.505477 GCCTCAAGATGATGCCTCGC 61.505 60.000 0.00 0.00 32.86 5.03
3469 3599 0.179065 CCTCAAGATGATGCCTCGCA 60.179 55.000 0.00 0.00 44.86 5.10
3478 3608 2.588989 TGCCTCGCATGCCATGTA 59.411 55.556 13.15 0.00 31.71 2.29
3479 3609 1.524393 TGCCTCGCATGCCATGTAG 60.524 57.895 13.15 4.55 31.71 2.74
3480 3610 2.256591 GCCTCGCATGCCATGTAGG 61.257 63.158 18.53 18.53 38.09 3.18
3481 3611 1.447217 CCTCGCATGCCATGTAGGA 59.553 57.895 18.19 8.22 41.22 2.94
3482 3612 0.035881 CCTCGCATGCCATGTAGGAT 59.964 55.000 18.19 0.00 41.22 3.24
3483 3613 1.436600 CTCGCATGCCATGTAGGATC 58.563 55.000 13.15 0.00 41.22 3.36
3484 3614 0.319813 TCGCATGCCATGTAGGATCG 60.320 55.000 13.15 0.23 41.22 3.69
3485 3615 1.293963 CGCATGCCATGTAGGATCGG 61.294 60.000 13.15 0.00 41.22 4.18
3486 3616 0.035317 GCATGCCATGTAGGATCGGA 59.965 55.000 6.36 0.00 41.22 4.55
3487 3617 1.339438 GCATGCCATGTAGGATCGGAT 60.339 52.381 6.36 0.00 41.22 4.18
3488 3618 2.093500 GCATGCCATGTAGGATCGGATA 60.093 50.000 6.36 0.00 41.22 2.59
3489 3619 3.432749 GCATGCCATGTAGGATCGGATAT 60.433 47.826 6.36 0.00 41.22 1.63
3490 3620 3.893326 TGCCATGTAGGATCGGATATG 57.107 47.619 0.00 0.00 41.22 1.78
3491 3621 3.440127 TGCCATGTAGGATCGGATATGA 58.560 45.455 0.00 0.00 41.22 2.15
3492 3622 3.195610 TGCCATGTAGGATCGGATATGAC 59.804 47.826 0.00 0.00 41.22 3.06
3493 3623 3.735208 GCCATGTAGGATCGGATATGACG 60.735 52.174 0.00 0.00 41.22 4.35
3494 3624 3.444034 CCATGTAGGATCGGATATGACGT 59.556 47.826 0.00 0.00 41.22 4.34
3495 3625 4.638865 CCATGTAGGATCGGATATGACGTA 59.361 45.833 0.00 0.00 41.22 3.57
3496 3626 5.124936 CCATGTAGGATCGGATATGACGTAA 59.875 44.000 0.00 0.00 41.22 3.18
3497 3627 6.349860 CCATGTAGGATCGGATATGACGTAAA 60.350 42.308 0.00 0.00 41.22 2.01
3498 3628 6.250344 TGTAGGATCGGATATGACGTAAAG 57.750 41.667 0.00 0.00 0.00 1.85
3499 3629 5.766670 TGTAGGATCGGATATGACGTAAAGT 59.233 40.000 0.00 0.00 0.00 2.66
3500 3630 6.936335 TGTAGGATCGGATATGACGTAAAGTA 59.064 38.462 0.00 0.00 0.00 2.24
3501 3631 6.497785 AGGATCGGATATGACGTAAAGTAG 57.502 41.667 0.00 0.00 0.00 2.57
3502 3632 5.415077 AGGATCGGATATGACGTAAAGTAGG 59.585 44.000 0.00 0.00 0.00 3.18
3503 3633 5.182760 GGATCGGATATGACGTAAAGTAGGT 59.817 44.000 0.00 0.00 0.00 3.08
3504 3634 6.294397 GGATCGGATATGACGTAAAGTAGGTT 60.294 42.308 0.00 0.00 0.00 3.50
3505 3635 6.064846 TCGGATATGACGTAAAGTAGGTTC 57.935 41.667 0.00 0.00 0.00 3.62
3506 3636 4.908156 CGGATATGACGTAAAGTAGGTTCG 59.092 45.833 0.00 0.00 0.00 3.95
3507 3637 5.218139 GGATATGACGTAAAGTAGGTTCGG 58.782 45.833 0.00 0.00 0.00 4.30
3508 3638 5.009010 GGATATGACGTAAAGTAGGTTCGGA 59.991 44.000 0.00 0.00 0.00 4.55
3509 3639 4.996788 ATGACGTAAAGTAGGTTCGGAT 57.003 40.909 0.00 0.00 0.00 4.18
3510 3640 7.094634 GGATATGACGTAAAGTAGGTTCGGATA 60.095 40.741 0.00 0.00 0.00 2.59
3511 3641 5.490139 TGACGTAAAGTAGGTTCGGATAG 57.510 43.478 0.00 0.00 0.00 2.08
3512 3642 4.336433 TGACGTAAAGTAGGTTCGGATAGG 59.664 45.833 0.00 0.00 0.00 2.57
3513 3643 3.633986 ACGTAAAGTAGGTTCGGATAGGG 59.366 47.826 0.00 0.00 0.00 3.53
3514 3644 3.885297 CGTAAAGTAGGTTCGGATAGGGA 59.115 47.826 0.00 0.00 0.00 4.20
3515 3645 4.339247 CGTAAAGTAGGTTCGGATAGGGAA 59.661 45.833 0.00 0.00 0.00 3.97
3516 3646 5.506982 CGTAAAGTAGGTTCGGATAGGGAAG 60.507 48.000 0.00 0.00 0.00 3.46
3517 3647 2.317973 AGTAGGTTCGGATAGGGAAGC 58.682 52.381 0.00 0.00 41.06 3.86
3518 3648 1.000496 GTAGGTTCGGATAGGGAAGCG 60.000 57.143 0.00 0.00 44.35 4.68
3519 3649 1.069258 GGTTCGGATAGGGAAGCGG 59.931 63.158 0.00 0.00 32.96 5.52
3520 3650 1.069258 GTTCGGATAGGGAAGCGGG 59.931 63.158 0.00 0.00 0.00 6.13
3521 3651 1.075822 TTCGGATAGGGAAGCGGGA 60.076 57.895 0.00 0.00 0.00 5.14
3522 3652 0.471211 TTCGGATAGGGAAGCGGGAT 60.471 55.000 0.00 0.00 0.00 3.85
3523 3653 0.898789 TCGGATAGGGAAGCGGGATC 60.899 60.000 0.00 0.00 0.00 3.36
3524 3654 1.889530 CGGATAGGGAAGCGGGATCC 61.890 65.000 1.92 1.92 36.16 3.36
3525 3655 0.545548 GGATAGGGAAGCGGGATCCT 60.546 60.000 12.58 0.00 37.14 3.24
3526 3656 0.899019 GATAGGGAAGCGGGATCCTC 59.101 60.000 12.58 4.01 37.14 3.71
3527 3657 0.489567 ATAGGGAAGCGGGATCCTCT 59.510 55.000 12.58 6.48 37.14 3.69
3528 3658 0.264955 TAGGGAAGCGGGATCCTCTT 59.735 55.000 12.58 14.81 37.14 2.85
3529 3659 0.621862 AGGGAAGCGGGATCCTCTTT 60.622 55.000 12.58 3.28 37.14 2.52
3530 3660 1.129058 GGGAAGCGGGATCCTCTTTA 58.871 55.000 12.58 0.00 37.14 1.85
3531 3661 1.070914 GGGAAGCGGGATCCTCTTTAG 59.929 57.143 12.58 0.00 37.14 1.85
3532 3662 1.070914 GGAAGCGGGATCCTCTTTAGG 59.929 57.143 12.58 0.00 45.21 2.69
3542 3672 1.153349 CTCTTTAGGAGGCGGGTGC 60.153 63.158 0.00 0.00 38.35 5.01
3543 3673 1.612442 TCTTTAGGAGGCGGGTGCT 60.612 57.895 0.00 0.00 42.25 4.40
3544 3674 1.198759 TCTTTAGGAGGCGGGTGCTT 61.199 55.000 0.00 0.00 42.25 3.91
3545 3675 1.002624 TTTAGGAGGCGGGTGCTTG 60.003 57.895 0.00 0.00 42.25 4.01
3546 3676 1.485294 TTTAGGAGGCGGGTGCTTGA 61.485 55.000 0.00 0.00 42.25 3.02
3547 3677 1.485294 TTAGGAGGCGGGTGCTTGAA 61.485 55.000 0.00 0.00 42.25 2.69
3548 3678 1.485294 TAGGAGGCGGGTGCTTGAAA 61.485 55.000 0.00 0.00 42.25 2.69
3549 3679 1.901464 GGAGGCGGGTGCTTGAAAA 60.901 57.895 0.00 0.00 42.25 2.29
3566 3696 5.323371 TGAAAAGAAAAAGTGTGGTCTGG 57.677 39.130 0.00 0.00 0.00 3.86
3567 3697 4.770010 TGAAAAGAAAAAGTGTGGTCTGGT 59.230 37.500 0.00 0.00 0.00 4.00
3568 3698 4.718940 AAAGAAAAAGTGTGGTCTGGTG 57.281 40.909 0.00 0.00 0.00 4.17
3569 3699 3.644966 AGAAAAAGTGTGGTCTGGTGA 57.355 42.857 0.00 0.00 0.00 4.02
3570 3700 3.279434 AGAAAAAGTGTGGTCTGGTGAC 58.721 45.455 0.00 0.00 42.22 3.67
3571 3701 2.799126 AAAAGTGTGGTCTGGTGACA 57.201 45.000 0.00 0.00 44.61 3.58
3572 3702 2.799126 AAAGTGTGGTCTGGTGACAA 57.201 45.000 0.00 0.00 44.61 3.18
3573 3703 2.799126 AAGTGTGGTCTGGTGACAAA 57.201 45.000 0.00 0.00 44.61 2.83
3574 3704 2.799126 AGTGTGGTCTGGTGACAAAA 57.201 45.000 0.00 0.00 44.61 2.44
3575 3705 2.643551 AGTGTGGTCTGGTGACAAAAG 58.356 47.619 0.00 0.00 44.61 2.27
3576 3706 1.065551 GTGTGGTCTGGTGACAAAAGC 59.934 52.381 0.00 0.00 44.61 3.51
3577 3707 1.064758 TGTGGTCTGGTGACAAAAGCT 60.065 47.619 0.00 0.00 44.61 3.74
3578 3708 1.334869 GTGGTCTGGTGACAAAAGCTG 59.665 52.381 0.00 0.00 44.61 4.24
3579 3709 1.211703 TGGTCTGGTGACAAAAGCTGA 59.788 47.619 0.00 0.00 44.61 4.26
3580 3710 2.297701 GGTCTGGTGACAAAAGCTGAA 58.702 47.619 0.00 0.00 44.61 3.02
3581 3711 2.687935 GGTCTGGTGACAAAAGCTGAAA 59.312 45.455 0.00 0.00 44.61 2.69
3582 3712 3.130340 GGTCTGGTGACAAAAGCTGAAAA 59.870 43.478 0.00 0.00 44.61 2.29
3583 3713 4.381505 GGTCTGGTGACAAAAGCTGAAAAA 60.382 41.667 0.00 0.00 44.61 1.94
3584 3714 4.800471 GTCTGGTGACAAAAGCTGAAAAAG 59.200 41.667 0.00 0.00 42.48 2.27
3585 3715 4.462483 TCTGGTGACAAAAGCTGAAAAAGT 59.538 37.500 0.00 0.00 42.06 2.66
3586 3716 5.047377 TCTGGTGACAAAAGCTGAAAAAGTT 60.047 36.000 0.00 0.00 42.06 2.66
3587 3717 4.928615 TGGTGACAAAAGCTGAAAAAGTTG 59.071 37.500 0.00 0.00 37.44 3.16
3588 3718 5.167845 GGTGACAAAAGCTGAAAAAGTTGA 58.832 37.500 0.00 0.00 0.00 3.18
3589 3719 5.637387 GGTGACAAAAGCTGAAAAAGTTGAA 59.363 36.000 0.00 0.00 0.00 2.69
3590 3720 6.183360 GGTGACAAAAGCTGAAAAAGTTGAAG 60.183 38.462 0.00 0.00 0.00 3.02
3591 3721 6.366061 GTGACAAAAGCTGAAAAAGTTGAAGT 59.634 34.615 0.00 0.00 0.00 3.01
3592 3722 7.540745 GTGACAAAAGCTGAAAAAGTTGAAGTA 59.459 33.333 0.00 0.00 0.00 2.24
3593 3723 8.085296 TGACAAAAGCTGAAAAAGTTGAAGTAA 58.915 29.630 0.00 0.00 0.00 2.24
3594 3724 8.825667 ACAAAAGCTGAAAAAGTTGAAGTAAA 57.174 26.923 0.00 0.00 0.00 2.01
3595 3725 9.267084 ACAAAAGCTGAAAAAGTTGAAGTAAAA 57.733 25.926 0.00 0.00 0.00 1.52
3598 3728 9.489084 AAAGCTGAAAAAGTTGAAGTAAAAAGT 57.511 25.926 0.00 0.00 0.00 2.66
3600 3730 9.788960 AGCTGAAAAAGTTGAAGTAAAAAGTAG 57.211 29.630 0.00 0.00 0.00 2.57
3601 3731 9.783256 GCTGAAAAAGTTGAAGTAAAAAGTAGA 57.217 29.630 0.00 0.00 0.00 2.59
3606 3736 9.952188 AAAAGTTGAAGTAAAAAGTAGAGATGC 57.048 29.630 0.00 0.00 0.00 3.91
3607 3737 8.677148 AAGTTGAAGTAAAAAGTAGAGATGCA 57.323 30.769 0.00 0.00 0.00 3.96
3608 3738 8.854614 AGTTGAAGTAAAAAGTAGAGATGCAT 57.145 30.769 0.00 0.00 0.00 3.96
3609 3739 8.725148 AGTTGAAGTAAAAAGTAGAGATGCATG 58.275 33.333 2.46 0.00 0.00 4.06
3610 3740 8.507249 GTTGAAGTAAAAAGTAGAGATGCATGT 58.493 33.333 2.46 0.00 0.00 3.21
3611 3741 8.032952 TGAAGTAAAAAGTAGAGATGCATGTG 57.967 34.615 2.46 0.00 0.00 3.21
3612 3742 7.661437 TGAAGTAAAAAGTAGAGATGCATGTGT 59.339 33.333 2.46 0.00 0.00 3.72
3613 3743 9.151471 GAAGTAAAAAGTAGAGATGCATGTGTA 57.849 33.333 2.46 0.00 0.00 2.90
3614 3744 8.480643 AGTAAAAAGTAGAGATGCATGTGTAC 57.519 34.615 19.88 19.88 0.00 2.90
3615 3745 8.314751 AGTAAAAAGTAGAGATGCATGTGTACT 58.685 33.333 23.22 23.22 32.62 2.73
3616 3746 9.582431 GTAAAAAGTAGAGATGCATGTGTACTA 57.418 33.333 27.25 13.62 30.49 1.82
3617 3747 8.709386 AAAAAGTAGAGATGCATGTGTACTAG 57.291 34.615 27.25 0.00 30.49 2.57
3618 3748 7.646548 AAAGTAGAGATGCATGTGTACTAGA 57.353 36.000 27.25 0.00 30.49 2.43
3619 3749 6.875948 AGTAGAGATGCATGTGTACTAGAG 57.124 41.667 26.28 0.00 30.07 2.43
3620 3750 6.361433 AGTAGAGATGCATGTGTACTAGAGT 58.639 40.000 26.28 7.72 30.07 3.24
3621 3751 5.766150 AGAGATGCATGTGTACTAGAGTC 57.234 43.478 2.46 0.00 0.00 3.36
3622 3752 5.445069 AGAGATGCATGTGTACTAGAGTCT 58.555 41.667 2.46 0.00 0.00 3.24
3623 3753 5.890985 AGAGATGCATGTGTACTAGAGTCTT 59.109 40.000 2.46 0.00 0.00 3.01
3624 3754 6.379703 AGAGATGCATGTGTACTAGAGTCTTT 59.620 38.462 2.46 0.00 0.00 2.52
3625 3755 7.558081 AGAGATGCATGTGTACTAGAGTCTTTA 59.442 37.037 2.46 0.00 0.00 1.85
3626 3756 8.243961 AGATGCATGTGTACTAGAGTCTTTAT 57.756 34.615 2.46 0.00 0.00 1.40
3627 3757 8.700051 AGATGCATGTGTACTAGAGTCTTTATT 58.300 33.333 2.46 0.00 0.00 1.40
3628 3758 9.319143 GATGCATGTGTACTAGAGTCTTTATTT 57.681 33.333 2.46 0.00 0.00 1.40
3629 3759 9.672673 ATGCATGTGTACTAGAGTCTTTATTTT 57.327 29.630 0.00 0.00 0.00 1.82
3630 3760 9.151471 TGCATGTGTACTAGAGTCTTTATTTTC 57.849 33.333 0.00 0.00 0.00 2.29
3631 3761 9.372369 GCATGTGTACTAGAGTCTTTATTTTCT 57.628 33.333 0.00 0.00 0.00 2.52
3655 3785 9.770097 TCTATTTCTTAATGAGGCTCATTAGTG 57.230 33.333 35.48 31.24 46.35 2.74
3656 3786 9.553064 CTATTTCTTAATGAGGCTCATTAGTGT 57.447 33.333 35.48 25.83 46.35 3.55
3657 3787 8.814038 ATTTCTTAATGAGGCTCATTAGTGTT 57.186 30.769 35.48 23.26 46.35 3.32
3658 3788 9.905713 ATTTCTTAATGAGGCTCATTAGTGTTA 57.094 29.630 35.48 25.13 46.35 2.41
3659 3789 8.948631 TTCTTAATGAGGCTCATTAGTGTTAG 57.051 34.615 35.48 30.43 46.35 2.34
3660 3790 6.986817 TCTTAATGAGGCTCATTAGTGTTAGC 59.013 38.462 35.48 2.44 46.35 3.09
3661 3791 5.365021 AATGAGGCTCATTAGTGTTAGCT 57.635 39.130 34.99 12.41 44.57 3.32
3662 3792 4.826274 TGAGGCTCATTAGTGTTAGCTT 57.174 40.909 14.43 0.00 35.30 3.74
3663 3793 4.507710 TGAGGCTCATTAGTGTTAGCTTG 58.492 43.478 14.43 0.00 35.30 4.01
3664 3794 3.274288 AGGCTCATTAGTGTTAGCTTGC 58.726 45.455 0.00 0.00 35.30 4.01
3665 3795 3.009723 GGCTCATTAGTGTTAGCTTGCA 58.990 45.455 0.00 0.00 35.30 4.08
3666 3796 3.629398 GGCTCATTAGTGTTAGCTTGCAT 59.371 43.478 0.00 0.00 35.30 3.96
3667 3797 4.096984 GGCTCATTAGTGTTAGCTTGCATT 59.903 41.667 0.00 0.00 35.30 3.56
3668 3798 5.032863 GCTCATTAGTGTTAGCTTGCATTG 58.967 41.667 0.00 0.00 32.18 2.82
3669 3799 5.565592 TCATTAGTGTTAGCTTGCATTGG 57.434 39.130 0.00 0.00 0.00 3.16
3670 3800 4.398988 TCATTAGTGTTAGCTTGCATTGGG 59.601 41.667 0.00 0.00 0.00 4.12
3671 3801 2.584835 AGTGTTAGCTTGCATTGGGA 57.415 45.000 0.00 0.00 0.00 4.37
3672 3802 2.875296 AGTGTTAGCTTGCATTGGGAA 58.125 42.857 0.00 0.00 0.00 3.97
3673 3803 2.821969 AGTGTTAGCTTGCATTGGGAAG 59.178 45.455 0.00 0.00 44.50 3.46
3674 3804 2.819608 GTGTTAGCTTGCATTGGGAAGA 59.180 45.455 0.00 0.00 44.46 2.87
3675 3805 3.255642 GTGTTAGCTTGCATTGGGAAGAA 59.744 43.478 0.00 0.00 44.46 2.52
3676 3806 3.894427 TGTTAGCTTGCATTGGGAAGAAA 59.106 39.130 0.00 0.00 44.46 2.52
3677 3807 4.343526 TGTTAGCTTGCATTGGGAAGAAAA 59.656 37.500 0.00 0.00 44.46 2.29
3678 3808 5.163364 TGTTAGCTTGCATTGGGAAGAAAAA 60.163 36.000 0.00 0.00 44.46 1.94
3713 3843 9.643693 AGATGCCTTAAATTACTTTTTGTCATG 57.356 29.630 0.00 0.00 0.00 3.07
3714 3844 8.776376 ATGCCTTAAATTACTTTTTGTCATGG 57.224 30.769 0.00 0.00 0.00 3.66
3715 3845 7.158021 TGCCTTAAATTACTTTTTGTCATGGG 58.842 34.615 0.00 0.00 0.00 4.00
3716 3846 6.593770 GCCTTAAATTACTTTTTGTCATGGGG 59.406 38.462 0.00 0.00 0.00 4.96
3717 3847 6.593770 CCTTAAATTACTTTTTGTCATGGGGC 59.406 38.462 0.00 0.00 0.00 5.80
3718 3848 5.559148 AAATTACTTTTTGTCATGGGGCA 57.441 34.783 0.00 0.00 0.00 5.36
3719 3849 5.760484 AATTACTTTTTGTCATGGGGCAT 57.240 34.783 0.00 0.00 0.00 4.40
3720 3850 6.865834 AATTACTTTTTGTCATGGGGCATA 57.134 33.333 0.00 0.00 0.00 3.14
3721 3851 7.436320 AATTACTTTTTGTCATGGGGCATAT 57.564 32.000 0.00 0.00 0.00 1.78
3722 3852 4.741321 ACTTTTTGTCATGGGGCATATG 57.259 40.909 0.00 0.00 0.00 1.78
3723 3853 4.095946 ACTTTTTGTCATGGGGCATATGT 58.904 39.130 4.29 0.00 0.00 2.29
3724 3854 5.268387 ACTTTTTGTCATGGGGCATATGTA 58.732 37.500 4.29 0.00 0.00 2.29
3725 3855 5.898972 ACTTTTTGTCATGGGGCATATGTAT 59.101 36.000 4.29 0.00 0.00 2.29
3726 3856 6.040842 ACTTTTTGTCATGGGGCATATGTATC 59.959 38.462 4.29 0.00 0.00 2.24
3727 3857 3.719268 TGTCATGGGGCATATGTATCC 57.281 47.619 4.29 4.59 0.00 2.59
3728 3858 2.985311 TGTCATGGGGCATATGTATCCA 59.015 45.455 13.42 13.42 0.00 3.41
3729 3859 3.592877 TGTCATGGGGCATATGTATCCAT 59.407 43.478 15.86 15.86 38.61 3.41
3730 3860 4.787534 TGTCATGGGGCATATGTATCCATA 59.212 41.667 19.04 7.91 36.55 2.74
3731 3861 5.432720 TGTCATGGGGCATATGTATCCATAT 59.567 40.000 19.04 9.16 43.54 1.78
3747 3877 9.439500 TGTATCCATATGTCATCATTGTACATG 57.561 33.333 0.00 0.00 35.54 3.21
3748 3878 6.806388 TCCATATGTCATCATTGTACATGC 57.194 37.500 0.00 0.00 35.54 4.06
3749 3879 5.706833 TCCATATGTCATCATTGTACATGCC 59.293 40.000 0.00 0.00 35.54 4.40
3750 3880 5.106038 CCATATGTCATCATTGTACATGCCC 60.106 44.000 0.00 0.00 35.54 5.36
3751 3881 3.650281 TGTCATCATTGTACATGCCCT 57.350 42.857 0.00 0.00 0.00 5.19
3752 3882 3.966979 TGTCATCATTGTACATGCCCTT 58.033 40.909 0.00 0.00 0.00 3.95
3753 3883 5.109500 TGTCATCATTGTACATGCCCTTA 57.891 39.130 0.00 0.00 0.00 2.69
3754 3884 5.504853 TGTCATCATTGTACATGCCCTTAA 58.495 37.500 0.00 0.00 0.00 1.85
3755 3885 6.128486 TGTCATCATTGTACATGCCCTTAAT 58.872 36.000 0.00 0.00 0.00 1.40
3756 3886 6.606796 TGTCATCATTGTACATGCCCTTAATT 59.393 34.615 0.00 0.00 0.00 1.40
3757 3887 7.141363 GTCATCATTGTACATGCCCTTAATTC 58.859 38.462 0.00 0.00 0.00 2.17
3785 3915 3.507233 ACCGGAGTTTCAGTCGTACATAA 59.493 43.478 9.46 0.00 0.00 1.90
3797 3927 7.650890 TCAGTCGTACATAAAACAAGTACTGA 58.349 34.615 0.00 0.00 36.77 3.41
3798 3928 8.301720 TCAGTCGTACATAAAACAAGTACTGAT 58.698 33.333 0.00 0.00 36.77 2.90
3833 3963 8.616799 AAGATACTCCCTCTCTCAAAATAAGT 57.383 34.615 0.00 0.00 0.00 2.24
3834 3964 8.017418 AGATACTCCCTCTCTCAAAATAAGTG 57.983 38.462 0.00 0.00 0.00 3.16
3835 3965 7.841729 AGATACTCCCTCTCTCAAAATAAGTGA 59.158 37.037 0.00 0.00 0.00 3.41
3836 3966 6.043854 ACTCCCTCTCTCAAAATAAGTGAC 57.956 41.667 0.00 0.00 0.00 3.67
3837 3967 5.782845 ACTCCCTCTCTCAAAATAAGTGACT 59.217 40.000 0.00 0.00 0.00 3.41
3838 3968 6.071051 ACTCCCTCTCTCAAAATAAGTGACTC 60.071 42.308 0.00 0.00 0.00 3.36
3839 3969 5.780282 TCCCTCTCTCAAAATAAGTGACTCA 59.220 40.000 0.00 0.00 0.00 3.41
3840 3970 6.270000 TCCCTCTCTCAAAATAAGTGACTCAA 59.730 38.462 0.00 0.00 0.00 3.02
3841 3971 6.370166 CCCTCTCTCAAAATAAGTGACTCAAC 59.630 42.308 0.00 0.00 0.00 3.18
3842 3972 7.158021 CCTCTCTCAAAATAAGTGACTCAACT 58.842 38.462 0.00 0.00 0.00 3.16
3843 3973 7.659390 CCTCTCTCAAAATAAGTGACTCAACTT 59.341 37.037 0.00 0.00 42.89 2.66
3844 3974 8.964476 TCTCTCAAAATAAGTGACTCAACTTT 57.036 30.769 0.00 0.00 40.77 2.66
3877 4007 6.685527 TTAGTAAGTGACATGTTGTTTGCA 57.314 33.333 0.00 0.00 0.00 4.08
3896 4026 2.266554 CAACTTGCAAGGCGTTTGAAA 58.733 42.857 29.18 1.41 39.21 2.69
3920 4050 3.047115 ACATTGGATGCTCCTCAGATCT 58.953 45.455 0.00 0.00 37.46 2.75
3921 4051 4.229639 ACATTGGATGCTCCTCAGATCTA 58.770 43.478 0.00 0.00 37.46 1.98
3922 4052 4.657504 ACATTGGATGCTCCTCAGATCTAA 59.342 41.667 0.00 0.00 37.46 2.10
3923 4053 4.952071 TTGGATGCTCCTCAGATCTAAG 57.048 45.455 0.00 0.00 37.46 2.18
3985 4118 3.326836 TGGATGTTGACATGCTCGTTA 57.673 42.857 15.15 0.00 43.85 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 1.597742 GCAAAACAGCAGAGGTGAGA 58.402 50.000 2.94 0.00 34.87 3.27
28 29 1.148273 TCGGCAAAACAGCAGAGGT 59.852 52.632 0.00 0.00 33.83 3.85
29 30 1.576421 GTCGGCAAAACAGCAGAGG 59.424 57.895 0.00 0.00 39.32 3.69
76 77 4.891756 AGCACCTGATATCTTCCCAAATTG 59.108 41.667 3.98 0.00 0.00 2.32
83 84 2.050144 TGGGAGCACCTGATATCTTCC 58.950 52.381 3.98 2.18 41.11 3.46
86 87 1.765314 GTGTGGGAGCACCTGATATCT 59.235 52.381 3.98 0.00 41.11 1.98
87 88 2.246719 GTGTGGGAGCACCTGATATC 57.753 55.000 0.00 0.00 41.11 1.63
109 110 2.485966 AGGTGTAGGAGGAGCATGAT 57.514 50.000 0.00 0.00 0.00 2.45
110 111 3.117131 TGATAGGTGTAGGAGGAGCATGA 60.117 47.826 0.00 0.00 0.00 3.07
117 118 2.564947 GGAGCATGATAGGTGTAGGAGG 59.435 54.545 0.00 0.00 0.00 4.30
166 168 5.181811 TCAAGTGCTTCATGTATGGTTTGAG 59.818 40.000 0.00 0.00 0.00 3.02
182 184 1.600916 GCTTCCGGGTTCAAGTGCT 60.601 57.895 0.00 0.00 0.00 4.40
265 267 3.728718 GCAACACGTTTGTATGGTTTGAG 59.271 43.478 10.65 0.00 33.55 3.02
266 268 3.696898 GCAACACGTTTGTATGGTTTGA 58.303 40.909 10.65 0.00 33.55 2.69
293 295 7.599998 TCATATGATTGATCGTCAACATACTGG 59.400 37.037 0.00 12.08 39.45 4.00
295 297 9.716531 AATCATATGATTGATCGTCAACATACT 57.283 29.630 26.47 0.01 42.66 2.12
303 305 8.037758 AGGTAGGAAATCATATGATTGATCGTC 58.962 37.037 27.46 20.41 43.41 4.20
364 373 2.792542 GCGCTTCATGTATGGAAACTGC 60.793 50.000 0.00 0.00 0.00 4.40
413 454 0.179936 CCAGAGCTGATCAGGGGAAC 59.820 60.000 23.89 7.00 30.95 3.62
414 455 0.252881 ACCAGAGCTGATCAGGGGAA 60.253 55.000 23.89 0.00 38.90 3.97
415 456 0.252881 AACCAGAGCTGATCAGGGGA 60.253 55.000 23.89 0.00 38.90 4.81
416 457 0.622665 AAACCAGAGCTGATCAGGGG 59.377 55.000 23.89 0.02 38.90 4.79
420 472 1.003580 GGTGGAAACCAGAGCTGATCA 59.996 52.381 0.00 0.00 32.34 2.92
527 589 3.047280 TCCGATTGTGGCGTGTGC 61.047 61.111 0.00 0.00 41.71 4.57
603 676 1.437986 CCGGCTAGTAGCTGTGACC 59.562 63.158 25.76 6.95 45.98 4.02
778 854 6.864360 TTTATTTTTCGACTTTCGGGAAGA 57.136 33.333 2.29 0.00 40.88 2.87
790 866 3.967470 GTCCGCGTTGTTTTATTTTTCGA 59.033 39.130 4.92 0.00 0.00 3.71
791 867 3.724751 TGTCCGCGTTGTTTTATTTTTCG 59.275 39.130 4.92 0.00 0.00 3.46
792 868 4.373226 CGTGTCCGCGTTGTTTTATTTTTC 60.373 41.667 4.92 0.00 0.00 2.29
793 869 3.482833 CGTGTCCGCGTTGTTTTATTTTT 59.517 39.130 4.92 0.00 0.00 1.94
888 964 0.408309 TGGGGAAGAGGAAGACGAGA 59.592 55.000 0.00 0.00 0.00 4.04
899 986 2.853542 TGGCACAGCTGGGGAAGA 60.854 61.111 19.71 0.00 0.00 2.87
1128 1221 1.220749 GGTGAGCTGGATGCCGTTA 59.779 57.895 0.00 0.00 44.23 3.18
1380 1473 1.833049 CGGGTAGCCGGAGAAGGAT 60.833 63.158 25.55 0.00 0.00 3.24
1812 1905 0.389426 AGTAAATGAACTCGCCGCGT 60.389 50.000 13.39 0.00 0.00 6.01
1851 1944 1.442769 CATTGACGTCCACCTCCAAG 58.557 55.000 14.12 0.00 0.00 3.61
2046 2139 1.298157 CCGATTTTGACTGAGCCGCA 61.298 55.000 0.00 0.00 0.00 5.69
2454 2571 2.206750 GCTTTCTGTGTACGGTTGTCA 58.793 47.619 0.00 0.00 0.00 3.58
2457 2574 1.937223 TGTGCTTTCTGTGTACGGTTG 59.063 47.619 0.00 0.00 0.00 3.77
2566 2686 1.202806 CCAGCCCTTGTTGAAGTCTGA 60.203 52.381 0.00 0.00 33.21 3.27
2598 2718 5.083122 ACATCACCCCAATTGAACAATGTA 58.917 37.500 7.12 0.00 0.00 2.29
2721 2847 4.154942 CCTCAAGGCCCTGCATAAATATT 58.845 43.478 0.00 0.00 0.00 1.28
2724 2850 1.412074 CCCTCAAGGCCCTGCATAAAT 60.412 52.381 0.00 0.00 0.00 1.40
2793 2919 0.828762 ATTGCTGCTTTCCTGGCACA 60.829 50.000 0.00 0.00 35.71 4.57
2850 2979 1.405933 CCATCTCCAGCGACAACATCA 60.406 52.381 0.00 0.00 0.00 3.07
2929 3058 4.508662 GTCCTAAATCCACCACTCTTGAG 58.491 47.826 0.00 0.00 0.00 3.02
2946 3075 1.762957 GCACTGCTTAGATGGGTCCTA 59.237 52.381 0.00 0.00 0.00 2.94
2992 3121 2.032528 CAACAGCAAGGCCGAGGA 59.967 61.111 0.00 0.00 0.00 3.71
3072 3201 5.820423 ACAAAAAGGTTTCTTACAAATGGCC 59.180 36.000 0.00 0.00 32.01 5.36
3273 3403 4.782019 TTCCTACAATTGCACCAACATC 57.218 40.909 5.05 0.00 0.00 3.06
3297 3427 3.120792 TGACACAAGCTAAACACGAGAC 58.879 45.455 0.00 0.00 0.00 3.36
3376 3506 4.322567 AGGACAGCTTCAGAATCAGAAAC 58.677 43.478 0.00 0.00 0.00 2.78
3405 3535 5.560724 ACTAGTTCCACTGTATGCACAAAT 58.439 37.500 0.00 0.00 33.22 2.32
3431 3561 0.307760 GCTATGCATTGTACACGCCC 59.692 55.000 3.54 0.00 0.00 6.13
3432 3562 0.307760 GGCTATGCATTGTACACGCC 59.692 55.000 3.54 2.55 32.10 5.68
3433 3563 1.261619 GAGGCTATGCATTGTACACGC 59.738 52.381 3.54 9.11 0.00 5.34
3434 3564 2.549926 TGAGGCTATGCATTGTACACG 58.450 47.619 3.54 0.00 0.00 4.49
3435 3565 4.191544 TCTTGAGGCTATGCATTGTACAC 58.808 43.478 3.54 0.21 0.00 2.90
3436 3566 4.486125 TCTTGAGGCTATGCATTGTACA 57.514 40.909 3.54 2.41 0.00 2.90
3437 3567 5.059161 TCATCTTGAGGCTATGCATTGTAC 58.941 41.667 3.54 0.42 0.00 2.90
3438 3568 5.294734 TCATCTTGAGGCTATGCATTGTA 57.705 39.130 3.54 0.00 0.00 2.41
3439 3569 4.160642 TCATCTTGAGGCTATGCATTGT 57.839 40.909 3.54 0.00 0.00 2.71
3440 3570 5.048153 CATCATCTTGAGGCTATGCATTG 57.952 43.478 3.54 3.55 0.00 2.82
3450 3580 0.179065 TGCGAGGCATCATCTTGAGG 60.179 55.000 0.00 0.00 31.71 3.86
3451 3581 3.374506 TGCGAGGCATCATCTTGAG 57.625 52.632 0.00 0.00 31.71 3.02
3462 3592 2.256591 CCTACATGGCATGCGAGGC 61.257 63.158 26.96 0.00 32.09 4.70
3463 3593 0.035881 ATCCTACATGGCATGCGAGG 59.964 55.000 30.04 30.04 37.80 4.63
3464 3594 1.436600 GATCCTACATGGCATGCGAG 58.563 55.000 26.70 22.01 35.26 5.03
3465 3595 0.319813 CGATCCTACATGGCATGCGA 60.320 55.000 26.70 19.03 35.26 5.10
3466 3596 1.293963 CCGATCCTACATGGCATGCG 61.294 60.000 26.70 19.33 35.26 4.73
3467 3597 0.035317 TCCGATCCTACATGGCATGC 59.965 55.000 26.70 9.90 35.26 4.06
3468 3598 2.775911 ATCCGATCCTACATGGCATG 57.224 50.000 25.31 25.31 35.26 4.06
3469 3599 4.033009 TCATATCCGATCCTACATGGCAT 58.967 43.478 0.00 0.00 35.26 4.40
3470 3600 3.195610 GTCATATCCGATCCTACATGGCA 59.804 47.826 0.00 0.00 35.26 4.92
3471 3601 3.735208 CGTCATATCCGATCCTACATGGC 60.735 52.174 0.00 0.00 35.26 4.40
3472 3602 3.444034 ACGTCATATCCGATCCTACATGG 59.556 47.826 0.00 0.00 37.10 3.66
3473 3603 4.703645 ACGTCATATCCGATCCTACATG 57.296 45.455 0.00 0.00 0.00 3.21
3474 3604 6.433404 ACTTTACGTCATATCCGATCCTACAT 59.567 38.462 0.00 0.00 0.00 2.29
3475 3605 5.766670 ACTTTACGTCATATCCGATCCTACA 59.233 40.000 0.00 0.00 0.00 2.74
3476 3606 6.251655 ACTTTACGTCATATCCGATCCTAC 57.748 41.667 0.00 0.00 0.00 3.18
3477 3607 6.596888 CCTACTTTACGTCATATCCGATCCTA 59.403 42.308 0.00 0.00 0.00 2.94
3478 3608 5.415077 CCTACTTTACGTCATATCCGATCCT 59.585 44.000 0.00 0.00 0.00 3.24
3479 3609 5.182760 ACCTACTTTACGTCATATCCGATCC 59.817 44.000 0.00 0.00 0.00 3.36
3480 3610 6.251655 ACCTACTTTACGTCATATCCGATC 57.748 41.667 0.00 0.00 0.00 3.69
3481 3611 6.567321 CGAACCTACTTTACGTCATATCCGAT 60.567 42.308 0.00 0.00 0.00 4.18
3482 3612 5.277490 CGAACCTACTTTACGTCATATCCGA 60.277 44.000 0.00 0.00 0.00 4.55
3483 3613 4.908156 CGAACCTACTTTACGTCATATCCG 59.092 45.833 0.00 0.00 0.00 4.18
3484 3614 5.009010 TCCGAACCTACTTTACGTCATATCC 59.991 44.000 0.00 0.00 0.00 2.59
3485 3615 6.064846 TCCGAACCTACTTTACGTCATATC 57.935 41.667 0.00 0.00 0.00 1.63
3486 3616 6.645790 ATCCGAACCTACTTTACGTCATAT 57.354 37.500 0.00 0.00 0.00 1.78
3487 3617 6.205464 CCTATCCGAACCTACTTTACGTCATA 59.795 42.308 0.00 0.00 0.00 2.15
3488 3618 4.996788 ATCCGAACCTACTTTACGTCAT 57.003 40.909 0.00 0.00 0.00 3.06
3489 3619 4.336433 CCTATCCGAACCTACTTTACGTCA 59.664 45.833 0.00 0.00 0.00 4.35
3490 3620 4.261363 CCCTATCCGAACCTACTTTACGTC 60.261 50.000 0.00 0.00 0.00 4.34
3491 3621 3.633986 CCCTATCCGAACCTACTTTACGT 59.366 47.826 0.00 0.00 0.00 3.57
3492 3622 3.885297 TCCCTATCCGAACCTACTTTACG 59.115 47.826 0.00 0.00 0.00 3.18
3493 3623 5.738495 GCTTCCCTATCCGAACCTACTTTAC 60.738 48.000 0.00 0.00 0.00 2.01
3494 3624 4.343239 GCTTCCCTATCCGAACCTACTTTA 59.657 45.833 0.00 0.00 0.00 1.85
3495 3625 3.134262 GCTTCCCTATCCGAACCTACTTT 59.866 47.826 0.00 0.00 0.00 2.66
3496 3626 2.699321 GCTTCCCTATCCGAACCTACTT 59.301 50.000 0.00 0.00 0.00 2.24
3497 3627 2.317973 GCTTCCCTATCCGAACCTACT 58.682 52.381 0.00 0.00 0.00 2.57
3498 3628 1.000496 CGCTTCCCTATCCGAACCTAC 60.000 57.143 0.00 0.00 0.00 3.18
3499 3629 1.325355 CGCTTCCCTATCCGAACCTA 58.675 55.000 0.00 0.00 0.00 3.08
3500 3630 1.400530 CCGCTTCCCTATCCGAACCT 61.401 60.000 0.00 0.00 0.00 3.50
3501 3631 1.069258 CCGCTTCCCTATCCGAACC 59.931 63.158 0.00 0.00 0.00 3.62
3502 3632 1.069258 CCCGCTTCCCTATCCGAAC 59.931 63.158 0.00 0.00 0.00 3.95
3503 3633 0.471211 ATCCCGCTTCCCTATCCGAA 60.471 55.000 0.00 0.00 0.00 4.30
3504 3634 0.898789 GATCCCGCTTCCCTATCCGA 60.899 60.000 0.00 0.00 0.00 4.55
3505 3635 1.592223 GATCCCGCTTCCCTATCCG 59.408 63.158 0.00 0.00 0.00 4.18
3506 3636 0.545548 AGGATCCCGCTTCCCTATCC 60.546 60.000 8.55 0.00 37.05 2.59
3507 3637 0.899019 GAGGATCCCGCTTCCCTATC 59.101 60.000 8.55 0.00 33.45 2.08
3508 3638 0.489567 AGAGGATCCCGCTTCCCTAT 59.510 55.000 8.55 0.00 33.66 2.57
3509 3639 0.264955 AAGAGGATCCCGCTTCCCTA 59.735 55.000 8.55 0.00 39.34 3.53
3510 3640 0.621862 AAAGAGGATCCCGCTTCCCT 60.622 55.000 15.60 1.07 42.54 4.20
3511 3641 1.070914 CTAAAGAGGATCCCGCTTCCC 59.929 57.143 15.60 0.00 42.54 3.97
3512 3642 2.535012 CTAAAGAGGATCCCGCTTCC 57.465 55.000 15.60 0.00 42.54 3.46
3524 3654 1.153349 GCACCCGCCTCCTAAAGAG 60.153 63.158 0.00 0.00 42.83 2.85
3525 3655 1.198759 AAGCACCCGCCTCCTAAAGA 61.199 55.000 0.00 0.00 39.83 2.52
3526 3656 1.026718 CAAGCACCCGCCTCCTAAAG 61.027 60.000 0.00 0.00 39.83 1.85
3527 3657 1.002624 CAAGCACCCGCCTCCTAAA 60.003 57.895 0.00 0.00 39.83 1.85
3528 3658 1.485294 TTCAAGCACCCGCCTCCTAA 61.485 55.000 0.00 0.00 39.83 2.69
3529 3659 1.485294 TTTCAAGCACCCGCCTCCTA 61.485 55.000 0.00 0.00 39.83 2.94
3530 3660 2.351924 TTTTCAAGCACCCGCCTCCT 62.352 55.000 0.00 0.00 39.83 3.69
3531 3661 1.866853 CTTTTCAAGCACCCGCCTCC 61.867 60.000 0.00 0.00 39.83 4.30
3532 3662 0.889186 TCTTTTCAAGCACCCGCCTC 60.889 55.000 0.00 0.00 39.83 4.70
3533 3663 0.467290 TTCTTTTCAAGCACCCGCCT 60.467 50.000 0.00 0.00 39.83 5.52
3534 3664 0.387565 TTTCTTTTCAAGCACCCGCC 59.612 50.000 0.00 0.00 39.83 6.13
3535 3665 2.217429 TTTTCTTTTCAAGCACCCGC 57.783 45.000 0.00 0.00 38.99 6.13
3536 3666 3.551485 CACTTTTTCTTTTCAAGCACCCG 59.449 43.478 0.00 0.00 0.00 5.28
3537 3667 4.329801 CACACTTTTTCTTTTCAAGCACCC 59.670 41.667 0.00 0.00 0.00 4.61
3538 3668 4.329801 CCACACTTTTTCTTTTCAAGCACC 59.670 41.667 0.00 0.00 0.00 5.01
3539 3669 4.929211 ACCACACTTTTTCTTTTCAAGCAC 59.071 37.500 0.00 0.00 0.00 4.40
3540 3670 5.047377 AGACCACACTTTTTCTTTTCAAGCA 60.047 36.000 0.00 0.00 0.00 3.91
3541 3671 5.289434 CAGACCACACTTTTTCTTTTCAAGC 59.711 40.000 0.00 0.00 0.00 4.01
3542 3672 5.807011 CCAGACCACACTTTTTCTTTTCAAG 59.193 40.000 0.00 0.00 0.00 3.02
3543 3673 5.245075 ACCAGACCACACTTTTTCTTTTCAA 59.755 36.000 0.00 0.00 0.00 2.69
3544 3674 4.770010 ACCAGACCACACTTTTTCTTTTCA 59.230 37.500 0.00 0.00 0.00 2.69
3545 3675 5.102313 CACCAGACCACACTTTTTCTTTTC 58.898 41.667 0.00 0.00 0.00 2.29
3546 3676 4.770010 TCACCAGACCACACTTTTTCTTTT 59.230 37.500 0.00 0.00 0.00 2.27
3547 3677 4.157840 GTCACCAGACCACACTTTTTCTTT 59.842 41.667 0.00 0.00 38.89 2.52
3548 3678 3.694566 GTCACCAGACCACACTTTTTCTT 59.305 43.478 0.00 0.00 38.89 2.52
3549 3679 3.279434 GTCACCAGACCACACTTTTTCT 58.721 45.455 0.00 0.00 38.89 2.52
3550 3680 3.013921 TGTCACCAGACCACACTTTTTC 58.986 45.455 0.00 0.00 44.33 2.29
3551 3681 3.080300 TGTCACCAGACCACACTTTTT 57.920 42.857 0.00 0.00 44.33 1.94
3552 3682 2.799126 TGTCACCAGACCACACTTTT 57.201 45.000 0.00 0.00 44.33 2.27
3553 3683 2.799126 TTGTCACCAGACCACACTTT 57.201 45.000 0.00 0.00 44.33 2.66
3554 3684 2.799126 TTTGTCACCAGACCACACTT 57.201 45.000 0.00 0.00 44.33 3.16
3555 3685 2.643551 CTTTTGTCACCAGACCACACT 58.356 47.619 0.00 0.00 44.33 3.55
3556 3686 1.065551 GCTTTTGTCACCAGACCACAC 59.934 52.381 0.00 0.00 44.33 3.82
3557 3687 1.064758 AGCTTTTGTCACCAGACCACA 60.065 47.619 0.00 0.00 44.33 4.17
3558 3688 1.334869 CAGCTTTTGTCACCAGACCAC 59.665 52.381 0.00 0.00 44.33 4.16
3559 3689 1.211703 TCAGCTTTTGTCACCAGACCA 59.788 47.619 0.00 0.00 44.33 4.02
3560 3690 1.967319 TCAGCTTTTGTCACCAGACC 58.033 50.000 0.00 0.00 44.33 3.85
3561 3691 4.370364 TTTTCAGCTTTTGTCACCAGAC 57.630 40.909 0.00 0.00 45.19 3.51
3562 3692 4.462483 ACTTTTTCAGCTTTTGTCACCAGA 59.538 37.500 0.00 0.00 0.00 3.86
3563 3693 4.747810 ACTTTTTCAGCTTTTGTCACCAG 58.252 39.130 0.00 0.00 0.00 4.00
3564 3694 4.799564 ACTTTTTCAGCTTTTGTCACCA 57.200 36.364 0.00 0.00 0.00 4.17
3565 3695 5.167845 TCAACTTTTTCAGCTTTTGTCACC 58.832 37.500 0.00 0.00 0.00 4.02
3566 3696 6.366061 ACTTCAACTTTTTCAGCTTTTGTCAC 59.634 34.615 0.00 0.00 0.00 3.67
3567 3697 6.454795 ACTTCAACTTTTTCAGCTTTTGTCA 58.545 32.000 0.00 0.00 0.00 3.58
3568 3698 6.951256 ACTTCAACTTTTTCAGCTTTTGTC 57.049 33.333 0.00 0.00 0.00 3.18
3569 3699 8.825667 TTTACTTCAACTTTTTCAGCTTTTGT 57.174 26.923 0.00 0.00 0.00 2.83
3572 3702 9.489084 ACTTTTTACTTCAACTTTTTCAGCTTT 57.511 25.926 0.00 0.00 0.00 3.51
3574 3704 9.788960 CTACTTTTTACTTCAACTTTTTCAGCT 57.211 29.630 0.00 0.00 0.00 4.24
3575 3705 9.783256 TCTACTTTTTACTTCAACTTTTTCAGC 57.217 29.630 0.00 0.00 0.00 4.26
3580 3710 9.952188 GCATCTCTACTTTTTACTTCAACTTTT 57.048 29.630 0.00 0.00 0.00 2.27
3581 3711 9.120538 TGCATCTCTACTTTTTACTTCAACTTT 57.879 29.630 0.00 0.00 0.00 2.66
3582 3712 8.677148 TGCATCTCTACTTTTTACTTCAACTT 57.323 30.769 0.00 0.00 0.00 2.66
3583 3713 8.725148 CATGCATCTCTACTTTTTACTTCAACT 58.275 33.333 0.00 0.00 0.00 3.16
3584 3714 8.507249 ACATGCATCTCTACTTTTTACTTCAAC 58.493 33.333 0.00 0.00 0.00 3.18
3585 3715 8.506437 CACATGCATCTCTACTTTTTACTTCAA 58.494 33.333 0.00 0.00 0.00 2.69
3586 3716 7.661437 ACACATGCATCTCTACTTTTTACTTCA 59.339 33.333 0.00 0.00 0.00 3.02
3587 3717 8.034058 ACACATGCATCTCTACTTTTTACTTC 57.966 34.615 0.00 0.00 0.00 3.01
3588 3718 7.986085 ACACATGCATCTCTACTTTTTACTT 57.014 32.000 0.00 0.00 0.00 2.24
3589 3719 8.314751 AGTACACATGCATCTCTACTTTTTACT 58.685 33.333 0.00 0.00 0.00 2.24
3590 3720 8.480643 AGTACACATGCATCTCTACTTTTTAC 57.519 34.615 0.00 0.00 0.00 2.01
3591 3721 9.803315 CTAGTACACATGCATCTCTACTTTTTA 57.197 33.333 0.00 0.00 0.00 1.52
3592 3722 8.531982 TCTAGTACACATGCATCTCTACTTTTT 58.468 33.333 0.00 0.00 0.00 1.94
3593 3723 8.067751 TCTAGTACACATGCATCTCTACTTTT 57.932 34.615 0.00 0.00 0.00 2.27
3594 3724 7.340743 ACTCTAGTACACATGCATCTCTACTTT 59.659 37.037 0.00 0.00 0.00 2.66
3595 3725 6.831353 ACTCTAGTACACATGCATCTCTACTT 59.169 38.462 0.00 0.00 0.00 2.24
3596 3726 6.361433 ACTCTAGTACACATGCATCTCTACT 58.639 40.000 0.00 4.19 0.00 2.57
3597 3727 6.485313 AGACTCTAGTACACATGCATCTCTAC 59.515 42.308 0.00 0.00 0.00 2.59
3598 3728 6.596621 AGACTCTAGTACACATGCATCTCTA 58.403 40.000 0.00 0.00 0.00 2.43
3599 3729 5.445069 AGACTCTAGTACACATGCATCTCT 58.555 41.667 0.00 0.00 0.00 3.10
3600 3730 5.766150 AGACTCTAGTACACATGCATCTC 57.234 43.478 0.00 0.00 0.00 2.75
3601 3731 6.537453 AAAGACTCTAGTACACATGCATCT 57.463 37.500 0.00 0.00 0.00 2.90
3602 3732 8.879342 AATAAAGACTCTAGTACACATGCATC 57.121 34.615 0.00 0.00 0.00 3.91
3603 3733 9.672673 AAAATAAAGACTCTAGTACACATGCAT 57.327 29.630 0.00 0.00 0.00 3.96
3604 3734 9.151471 GAAAATAAAGACTCTAGTACACATGCA 57.849 33.333 0.00 0.00 0.00 3.96
3605 3735 9.372369 AGAAAATAAAGACTCTAGTACACATGC 57.628 33.333 0.00 0.00 0.00 4.06
3629 3759 9.770097 CACTAATGAGCCTCATTAAGAAATAGA 57.230 33.333 23.54 4.94 45.49 1.98
3630 3760 9.553064 ACACTAATGAGCCTCATTAAGAAATAG 57.447 33.333 23.54 15.96 45.49 1.73
3631 3761 9.905713 AACACTAATGAGCCTCATTAAGAAATA 57.094 29.630 23.54 6.21 45.49 1.40
3632 3762 8.814038 AACACTAATGAGCCTCATTAAGAAAT 57.186 30.769 23.54 9.91 45.49 2.17
3633 3763 9.383519 CTAACACTAATGAGCCTCATTAAGAAA 57.616 33.333 23.54 7.48 45.49 2.52
3634 3764 7.495934 GCTAACACTAATGAGCCTCATTAAGAA 59.504 37.037 23.54 7.81 45.49 2.52
3635 3765 6.986817 GCTAACACTAATGAGCCTCATTAAGA 59.013 38.462 23.54 8.13 45.49 2.10
3636 3766 6.989169 AGCTAACACTAATGAGCCTCATTAAG 59.011 38.462 23.54 20.51 45.49 1.85
3637 3767 6.889198 AGCTAACACTAATGAGCCTCATTAA 58.111 36.000 23.54 10.89 45.49 1.40
3638 3768 6.485830 AGCTAACACTAATGAGCCTCATTA 57.514 37.500 22.40 22.40 44.57 1.90
3640 3770 5.121811 CAAGCTAACACTAATGAGCCTCAT 58.878 41.667 0.08 0.08 39.09 2.90
3641 3771 4.507710 CAAGCTAACACTAATGAGCCTCA 58.492 43.478 0.00 0.00 35.45 3.86
3642 3772 3.311048 GCAAGCTAACACTAATGAGCCTC 59.689 47.826 0.00 0.00 35.45 4.70
3643 3773 3.274288 GCAAGCTAACACTAATGAGCCT 58.726 45.455 0.00 0.00 35.45 4.58
3644 3774 3.009723 TGCAAGCTAACACTAATGAGCC 58.990 45.455 0.00 0.00 35.45 4.70
3645 3775 4.889832 ATGCAAGCTAACACTAATGAGC 57.110 40.909 0.00 0.00 35.07 4.26
3646 3776 5.449588 CCCAATGCAAGCTAACACTAATGAG 60.450 44.000 0.00 0.00 0.00 2.90
3647 3777 4.398988 CCCAATGCAAGCTAACACTAATGA 59.601 41.667 0.00 0.00 0.00 2.57
3648 3778 4.398988 TCCCAATGCAAGCTAACACTAATG 59.601 41.667 0.00 0.00 0.00 1.90
3649 3779 4.599041 TCCCAATGCAAGCTAACACTAAT 58.401 39.130 0.00 0.00 0.00 1.73
3650 3780 4.027674 TCCCAATGCAAGCTAACACTAA 57.972 40.909 0.00 0.00 0.00 2.24
3651 3781 3.712016 TCCCAATGCAAGCTAACACTA 57.288 42.857 0.00 0.00 0.00 2.74
3652 3782 2.584835 TCCCAATGCAAGCTAACACT 57.415 45.000 0.00 0.00 0.00 3.55
3653 3783 2.819608 TCTTCCCAATGCAAGCTAACAC 59.180 45.455 0.00 0.00 0.00 3.32
3654 3784 3.153369 TCTTCCCAATGCAAGCTAACA 57.847 42.857 0.00 0.00 0.00 2.41
3655 3785 4.519540 TTTCTTCCCAATGCAAGCTAAC 57.480 40.909 0.00 0.00 0.00 2.34
3656 3786 5.543507 TTTTTCTTCCCAATGCAAGCTAA 57.456 34.783 0.00 0.00 0.00 3.09
3687 3817 9.643693 CATGACAAAAAGTAATTTAAGGCATCT 57.356 29.630 5.83 0.00 34.45 2.90
3688 3818 8.872845 CCATGACAAAAAGTAATTTAAGGCATC 58.127 33.333 5.83 0.00 34.45 3.91
3689 3819 7.823799 CCCATGACAAAAAGTAATTTAAGGCAT 59.176 33.333 0.00 3.55 36.09 4.40
3690 3820 7.158021 CCCATGACAAAAAGTAATTTAAGGCA 58.842 34.615 0.00 0.00 31.25 4.75
3691 3821 6.593770 CCCCATGACAAAAAGTAATTTAAGGC 59.406 38.462 0.00 0.00 0.00 4.35
3692 3822 6.593770 GCCCCATGACAAAAAGTAATTTAAGG 59.406 38.462 0.00 0.00 0.00 2.69
3693 3823 7.158021 TGCCCCATGACAAAAAGTAATTTAAG 58.842 34.615 0.00 0.00 0.00 1.85
3694 3824 7.067496 TGCCCCATGACAAAAAGTAATTTAA 57.933 32.000 0.00 0.00 0.00 1.52
3695 3825 6.672266 TGCCCCATGACAAAAAGTAATTTA 57.328 33.333 0.00 0.00 0.00 1.40
3696 3826 5.559148 TGCCCCATGACAAAAAGTAATTT 57.441 34.783 0.00 0.00 0.00 1.82
3697 3827 5.760484 ATGCCCCATGACAAAAAGTAATT 57.240 34.783 0.00 0.00 0.00 1.40
3698 3828 6.383726 ACATATGCCCCATGACAAAAAGTAAT 59.616 34.615 1.58 0.00 0.00 1.89
3699 3829 5.719085 ACATATGCCCCATGACAAAAAGTAA 59.281 36.000 1.58 0.00 0.00 2.24
3700 3830 5.268387 ACATATGCCCCATGACAAAAAGTA 58.732 37.500 1.58 0.00 0.00 2.24
3701 3831 4.095946 ACATATGCCCCATGACAAAAAGT 58.904 39.130 1.58 0.00 0.00 2.66
3702 3832 4.741321 ACATATGCCCCATGACAAAAAG 57.259 40.909 1.58 0.00 0.00 2.27
3703 3833 5.304101 GGATACATATGCCCCATGACAAAAA 59.696 40.000 1.58 0.00 0.00 1.94
3704 3834 4.832266 GGATACATATGCCCCATGACAAAA 59.168 41.667 1.58 0.00 0.00 2.44
3705 3835 4.141065 TGGATACATATGCCCCATGACAAA 60.141 41.667 1.58 0.00 46.17 2.83
3706 3836 3.397282 TGGATACATATGCCCCATGACAA 59.603 43.478 1.58 0.00 46.17 3.18
3707 3837 2.985311 TGGATACATATGCCCCATGACA 59.015 45.455 1.58 0.00 46.17 3.58
3708 3838 3.719268 TGGATACATATGCCCCATGAC 57.281 47.619 1.58 0.00 46.17 3.06
3721 3851 9.439500 CATGTACAATGATGACATATGGATACA 57.561 33.333 7.80 2.83 43.89 2.29
3722 3852 8.393366 GCATGTACAATGATGACATATGGATAC 58.607 37.037 7.80 0.00 35.50 2.24
3723 3853 7.553760 GGCATGTACAATGATGACATATGGATA 59.446 37.037 7.80 0.00 35.50 2.59
3724 3854 6.376299 GGCATGTACAATGATGACATATGGAT 59.624 38.462 7.80 0.00 35.50 3.41
3725 3855 5.706833 GGCATGTACAATGATGACATATGGA 59.293 40.000 7.80 0.00 35.50 3.41
3726 3856 5.106038 GGGCATGTACAATGATGACATATGG 60.106 44.000 7.80 0.00 35.50 2.74
3727 3857 5.708697 AGGGCATGTACAATGATGACATATG 59.291 40.000 0.00 0.00 35.50 1.78
3728 3858 5.884322 AGGGCATGTACAATGATGACATAT 58.116 37.500 0.00 0.00 35.50 1.78
3729 3859 5.308976 AGGGCATGTACAATGATGACATA 57.691 39.130 0.00 0.00 35.50 2.29
3730 3860 4.174704 AGGGCATGTACAATGATGACAT 57.825 40.909 0.00 0.00 38.50 3.06
3731 3861 3.650281 AGGGCATGTACAATGATGACA 57.350 42.857 0.00 0.00 28.05 3.58
3732 3862 6.639632 ATTAAGGGCATGTACAATGATGAC 57.360 37.500 0.00 0.00 0.00 3.06
3733 3863 7.062322 AGAATTAAGGGCATGTACAATGATGA 58.938 34.615 0.00 0.00 0.00 2.92
3734 3864 7.230108 AGAGAATTAAGGGCATGTACAATGATG 59.770 37.037 0.00 0.00 0.00 3.07
3735 3865 7.230108 CAGAGAATTAAGGGCATGTACAATGAT 59.770 37.037 0.00 0.00 0.00 2.45
3736 3866 6.543465 CAGAGAATTAAGGGCATGTACAATGA 59.457 38.462 0.00 0.00 0.00 2.57
3737 3867 6.732154 CAGAGAATTAAGGGCATGTACAATG 58.268 40.000 0.00 0.12 0.00 2.82
3738 3868 5.300286 GCAGAGAATTAAGGGCATGTACAAT 59.700 40.000 0.00 0.00 0.00 2.71
3739 3869 4.640201 GCAGAGAATTAAGGGCATGTACAA 59.360 41.667 0.00 0.00 0.00 2.41
3740 3870 4.199310 GCAGAGAATTAAGGGCATGTACA 58.801 43.478 0.00 0.00 0.00 2.90
3741 3871 4.035675 GTGCAGAGAATTAAGGGCATGTAC 59.964 45.833 0.00 0.00 33.43 2.90
3742 3872 4.199310 GTGCAGAGAATTAAGGGCATGTA 58.801 43.478 0.00 0.00 33.43 2.29
3743 3873 3.019564 GTGCAGAGAATTAAGGGCATGT 58.980 45.455 0.00 0.00 33.43 3.21
3744 3874 2.360165 GGTGCAGAGAATTAAGGGCATG 59.640 50.000 0.00 0.00 33.43 4.06
3745 3875 2.659428 GGTGCAGAGAATTAAGGGCAT 58.341 47.619 0.00 0.00 33.43 4.40
3746 3876 1.678728 CGGTGCAGAGAATTAAGGGCA 60.679 52.381 0.00 0.00 0.00 5.36
3747 3877 1.017387 CGGTGCAGAGAATTAAGGGC 58.983 55.000 0.00 0.00 0.00 5.19
3748 3878 1.209504 TCCGGTGCAGAGAATTAAGGG 59.790 52.381 0.00 0.00 0.00 3.95
3749 3879 2.093447 ACTCCGGTGCAGAGAATTAAGG 60.093 50.000 8.34 0.00 35.27 2.69
3750 3880 3.252974 ACTCCGGTGCAGAGAATTAAG 57.747 47.619 8.34 0.00 35.27 1.85
3751 3881 3.695830 AACTCCGGTGCAGAGAATTAA 57.304 42.857 8.34 0.00 35.27 1.40
3752 3882 3.007506 TGAAACTCCGGTGCAGAGAATTA 59.992 43.478 8.34 0.00 35.27 1.40
3753 3883 2.224523 TGAAACTCCGGTGCAGAGAATT 60.225 45.455 8.34 3.44 35.27 2.17
3754 3884 1.347707 TGAAACTCCGGTGCAGAGAAT 59.652 47.619 8.34 0.00 35.27 2.40
3755 3885 0.756294 TGAAACTCCGGTGCAGAGAA 59.244 50.000 8.34 0.00 35.27 2.87
3756 3886 0.318441 CTGAAACTCCGGTGCAGAGA 59.682 55.000 8.34 0.00 35.27 3.10
3757 3887 0.034059 ACTGAAACTCCGGTGCAGAG 59.966 55.000 14.14 0.14 34.71 3.35
3807 3937 9.716556 ACTTATTTTGAGAGAGGGAGTATCTTA 57.283 33.333 0.00 0.00 33.73 2.10
3808 3938 8.482128 CACTTATTTTGAGAGAGGGAGTATCTT 58.518 37.037 0.00 0.00 33.73 2.40
3809 3939 7.841729 TCACTTATTTTGAGAGAGGGAGTATCT 59.158 37.037 0.00 0.00 33.73 1.98
3810 3940 7.923878 GTCACTTATTTTGAGAGAGGGAGTATC 59.076 40.741 0.00 0.00 0.00 2.24
3811 3941 7.621683 AGTCACTTATTTTGAGAGAGGGAGTAT 59.378 37.037 0.00 0.00 0.00 2.12
3812 3942 6.954684 AGTCACTTATTTTGAGAGAGGGAGTA 59.045 38.462 0.00 0.00 0.00 2.59
3813 3943 5.782845 AGTCACTTATTTTGAGAGAGGGAGT 59.217 40.000 0.00 0.00 0.00 3.85
3814 3944 6.071108 TGAGTCACTTATTTTGAGAGAGGGAG 60.071 42.308 0.00 0.00 0.00 4.30
3815 3945 5.780282 TGAGTCACTTATTTTGAGAGAGGGA 59.220 40.000 0.00 0.00 0.00 4.20
3816 3946 6.042638 TGAGTCACTTATTTTGAGAGAGGG 57.957 41.667 0.00 0.00 0.00 4.30
3817 3947 7.158021 AGTTGAGTCACTTATTTTGAGAGAGG 58.842 38.462 0.00 0.00 0.00 3.69
3818 3948 8.600449 AAGTTGAGTCACTTATTTTGAGAGAG 57.400 34.615 0.00 0.00 35.10 3.20
3819 3949 8.964476 AAAGTTGAGTCACTTATTTTGAGAGA 57.036 30.769 0.00 0.00 35.87 3.10
3847 3977 9.609346 AACAACATGTCACTTACTAAAGTTAGT 57.391 29.630 0.00 8.67 43.60 2.24
3850 3980 7.700656 GCAAACAACATGTCACTTACTAAAGTT 59.299 33.333 0.00 0.00 43.60 2.66
3852 3982 7.192913 TGCAAACAACATGTCACTTACTAAAG 58.807 34.615 0.00 0.00 38.77 1.85
3853 3983 7.089770 TGCAAACAACATGTCACTTACTAAA 57.910 32.000 0.00 0.00 0.00 1.85
3854 3984 6.685527 TGCAAACAACATGTCACTTACTAA 57.314 33.333 0.00 0.00 0.00 2.24
3855 3985 6.685527 TTGCAAACAACATGTCACTTACTA 57.314 33.333 0.00 0.00 0.00 1.82
3856 3986 5.574891 TTGCAAACAACATGTCACTTACT 57.425 34.783 0.00 0.00 0.00 2.24
3877 4007 2.663826 TTTCAAACGCCTTGCAAGTT 57.336 40.000 24.35 10.97 34.76 2.66
3920 4050 7.294017 AGGCGCCTTAATACTATTGTACTTA 57.706 36.000 27.08 0.00 0.00 2.24
3921 4051 6.170846 AGGCGCCTTAATACTATTGTACTT 57.829 37.500 27.08 0.00 0.00 2.24
3922 4052 5.803237 AGGCGCCTTAATACTATTGTACT 57.197 39.130 27.08 0.00 0.00 2.73
3923 4053 6.685657 ACTAGGCGCCTTAATACTATTGTAC 58.314 40.000 37.74 0.00 0.00 2.90
3985 4118 6.146021 GCCAAACATCTTTCGAATTTGAATGT 59.854 34.615 18.24 12.21 34.03 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.