AutoCloner

Multiple sequence alignment - TraesCS4A01G116100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G116100	chr4A	100.000	3359	0	0	1	3359	140984453	140981095	0.000000e+00	6204.0
1	TraesCS4A01G116100	chr4D	93.493	3381	97	45	15	3359	329132627	329135920	0.000000e+00	4911.0
2	TraesCS4A01G116100	chr4B	89.972	3251	156	78	176	3352	408974960	408978114	0.000000e+00	4041.0
3	TraesCS4A01G116100	chr4B	87.568	185	20	1	1	185	408974089	408974270	9.440000e-51	211.0
4	TraesCS4A01G116100	chr1B	93.467	2097	51	29	264	2355	135827754	135825739	0.000000e+00	3035.0
5	TraesCS4A01G116100	chr1B	85.752	765	54	18	2627	3359	135819462	135818721	0.000000e+00	758.0
6	TraesCS4A01G116100	chr1B	95.946	222	7	1	2353	2572	135825578	135825357	3.190000e-95	359.0
7	TraesCS4A01G116100	chr1A	89.127	699	27	14	2675	3359	586341734	586342397	0.000000e+00	824.0
8	TraesCS4A01G116100	chr1A	82.768	708	43	25	2668	3357	587486338	587486984	2.930000e-155	558.0
9	TraesCS4A01G116100	chr3A	83.544	711	38	26	2668	3359	55174354	55173704	2.890000e-165	592.0
10	TraesCS4A01G116100	chr5A	83.498	709	38	25	2668	3359	637292723	637292077	3.730000e-164	588.0
11	TraesCS4A01G116100	chr7A	82.817	710	40	31	2668	3359	168660419	168659774	8.140000e-156	560.0
12	TraesCS4A01G116100	chr6A	81.921	708	45	26	2668	3359	265618508	265617868	3.840000e-144	521.0
13	TraesCS4A01G116100	chr2D	88.304	342	27	7	1	336	407120065	407119731	6.750000e-107	398.0
14	TraesCS4A01G116100	chr2D	81.295	139	23	3	2831	2968	405598426	405598562	3.540000e-20	110.0
15	TraesCS4A01G116100	chr5D	89.247	93	10	0	2478	2570	69952041	69952133	2.120000e-22	117.0
16	TraesCS4A01G116100	chr5D	95.833	48	0	2	2574	2620	69952156	69952202	3.590000e-10	76.8
17	TraesCS4A01G116100	chr5D	100.000	31	0	0	1095	1125	218261284	218261254	1.300000e-04	58.4

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G116100	chr4A	140981095	140984453	3358	True	6204	6204	100.0000	1	3359	1	chr4A.!!$R1	3358
1	TraesCS4A01G116100	chr4D	329132627	329135920	3293	False	4911	4911	93.4930	15	3359	1	chr4D.!!$F1	3344
2	TraesCS4A01G116100	chr4B	408974089	408978114	4025	False	2126	4041	88.7700	1	3352	2	chr4B.!!$F1	3351
3	TraesCS4A01G116100	chr1B	135825357	135827754	2397	True	1697	3035	94.7065	264	2572	2	chr1B.!!$R2	2308
4	TraesCS4A01G116100	chr1B	135818721	135819462	741	True	758	758	85.7520	2627	3359	1	chr1B.!!$R1	732
5	TraesCS4A01G116100	chr1A	586341734	586342397	663	False	824	824	89.1270	2675	3359	1	chr1A.!!$F1	684
6	TraesCS4A01G116100	chr1A	587486338	587486984	646	False	558	558	82.7680	2668	3357	1	chr1A.!!$F2	689
7	TraesCS4A01G116100	chr3A	55173704	55174354	650	True	592	592	83.5440	2668	3359	1	chr3A.!!$R1	691
8	TraesCS4A01G116100	chr5A	637292077	637292723	646	True	588	588	83.4980	2668	3359	1	chr5A.!!$R1	691
9	TraesCS4A01G116100	chr7A	168659774	168660419	645	True	560	560	82.8170	2668	3359	1	chr7A.!!$R1	691
10	TraesCS4A01G116100	chr6A	265617868	265618508	640	True	521	521	81.9210	2668	3359	1	chr6A.!!$R1	691

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
947	1702	0.166814	GGCGTCTGCATTTCTGTGTC	59.833	55.0	0.0	0.0	45.35	3.67	F
1887	2642	1.656652	CTGTTCGTATTGAGGCTGGG	58.343	55.0	0.0	0.0	0.00	4.45	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1917	2672	1.301479	GTCGGCTTCAAAGACCGGT	60.301	57.895	6.92	6.92	42.18	5.28	R
3123	4128	1.269936	ACAAACCTGCTACGCTACGTT	60.270	47.619	0.00	0.00	41.54	3.99	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
37	38	5.163343	CGAAGGGGACTAATAAATCAGGACA	60.163	44.000	0.00	0.00	42.68	4.02
40	41	5.131142	AGGGGACTAATAAATCAGGACAGTG	59.869	44.000	0.00	0.00	40.61	3.66
53	54	2.236395	AGGACAGTGGTAGCATGTTACC	59.764	50.000	26.93	26.93	42.83	2.85
69	70	4.317488	TGTTACCCATGTTTCGGTTACTC	58.683	43.478	8.72	0.00	33.75	2.59
75	76	6.063404	ACCCATGTTTCGGTTACTCTTTTTA	58.937	36.000	0.00	0.00	0.00	1.52
93	95	8.680039	TCTTTTTAAAATCTCCAACGGACTTA	57.320	30.769	0.55	0.00	0.00	2.24
145	147	3.981071	TTTAGGAGGGTGACATGTGAG	57.019	47.619	1.15	0.00	0.00	3.51
174	176	5.466819	TCGTTAGACCTGTAACATCAAGTG	58.533	41.667	0.00	0.00	33.20	3.16
178	180	7.383029	CGTTAGACCTGTAACATCAAGTGTAAA	59.617	37.037	0.00	0.00	41.14	2.01
185	187	7.089770	TGTAACATCAAGTGTAAAGTTGCAA	57.910	32.000	0.00	0.00	41.14	4.08
189	191	4.481930	TCAAGTGTAAAGTTGCAATCGG	57.518	40.909	0.59	0.00	0.00	4.18
247	947	2.284417	GCTTTTATCCGTAACGAGCAGG	59.716	50.000	0.00	0.00	33.06	4.85
366	1069	1.377725	CAGGCGCCAGGACAGAAAT	60.378	57.895	31.54	0.00	0.00	2.17
484	1228	3.067461	TCAAATCAAACCAACCAACGAGG	59.933	43.478	0.00	0.00	45.67	4.63
499	1243	8.679100	CAACCAACGAGGATTTATTATACCAAA	58.321	33.333	5.70	0.00	41.22	3.28
502	1246	7.040686	CCAACGAGGATTTATTATACCAAAGGG	60.041	40.741	0.00	0.00	41.22	3.95
626	1377	3.005529	TCCTTCCTTCCTTCCTTCCTT	57.994	47.619	0.00	0.00	0.00	3.36
627	1378	2.913617	TCCTTCCTTCCTTCCTTCCTTC	59.086	50.000	0.00	0.00	0.00	3.46
628	1379	2.025793	CCTTCCTTCCTTCCTTCCTTCC	60.026	54.545	0.00	0.00	0.00	3.46
629	1380	2.743131	TCCTTCCTTCCTTCCTTCCT	57.257	50.000	0.00	0.00	0.00	3.36
630	1381	2.552367	TCCTTCCTTCCTTCCTTCCTC	58.448	52.381	0.00	0.00	0.00	3.71
631	1382	2.114506	TCCTTCCTTCCTTCCTTCCTCT	59.885	50.000	0.00	0.00	0.00	3.69
632	1383	2.238395	CCTTCCTTCCTTCCTTCCTCTG	59.762	54.545	0.00	0.00	0.00	3.35
633	1384	1.280457	TCCTTCCTTCCTTCCTCTGC	58.720	55.000	0.00	0.00	0.00	4.26
634	1385	1.203364	TCCTTCCTTCCTTCCTCTGCT	60.203	52.381	0.00	0.00	0.00	4.24
635	1386	1.209261	CCTTCCTTCCTTCCTCTGCTC	59.791	57.143	0.00	0.00	0.00	4.26
711	1464	1.070914	GATCCCGTCTCCAGATTTCCC	59.929	57.143	0.00	0.00	0.00	3.97
712	1465	0.981277	TCCCGTCTCCAGATTTCCCC	60.981	60.000	0.00	0.00	0.00	4.81
713	1466	0.983378	CCCGTCTCCAGATTTCCCCT	60.983	60.000	0.00	0.00	0.00	4.79
714	1467	0.466124	CCGTCTCCAGATTTCCCCTC	59.534	60.000	0.00	0.00	0.00	4.30
715	1468	0.466124	CGTCTCCAGATTTCCCCTCC	59.534	60.000	0.00	0.00	0.00	4.30
716	1469	1.584724	GTCTCCAGATTTCCCCTCCA	58.415	55.000	0.00	0.00	0.00	3.86
717	1470	1.210722	GTCTCCAGATTTCCCCTCCAC	59.789	57.143	0.00	0.00	0.00	4.02
718	1471	0.548510	CTCCAGATTTCCCCTCCACC	59.451	60.000	0.00	0.00	0.00	4.61
923	1677	0.509499	CGGCGTCGATCTAGACTCTC	59.491	60.000	1.44	0.00	38.90	3.20
947	1702	0.166814	GGCGTCTGCATTTCTGTGTC	59.833	55.000	0.00	0.00	45.35	3.67
951	1706	3.062763	CGTCTGCATTTCTGTGTCTTCT	58.937	45.455	0.00	0.00	0.00	2.85
952	1707	3.496130	CGTCTGCATTTCTGTGTCTTCTT	59.504	43.478	0.00	0.00	0.00	2.52
953	1708	4.610007	CGTCTGCATTTCTGTGTCTTCTTG	60.610	45.833	0.00	0.00	0.00	3.02
954	1709	4.274459	GTCTGCATTTCTGTGTCTTCTTGT	59.726	41.667	0.00	0.00	0.00	3.16
955	1710	4.883585	TCTGCATTTCTGTGTCTTCTTGTT	59.116	37.500	0.00	0.00	0.00	2.83
956	1711	5.008019	TCTGCATTTCTGTGTCTTCTTGTTC	59.992	40.000	0.00	0.00	0.00	3.18
957	1712	4.214437	GCATTTCTGTGTCTTCTTGTTCG	58.786	43.478	0.00	0.00	0.00	3.95
966	1721	4.025145	GTGTCTTCTTGTTCGGTTCGATTT	60.025	41.667	0.00	0.00	35.23	2.17
1458	2213	3.812019	CTCGTCACGGGGTCCTCG	61.812	72.222	10.39	10.39	0.00	4.63
1887	2642	1.656652	CTGTTCGTATTGAGGCTGGG	58.343	55.000	0.00	0.00	0.00	4.45
1917	2672	1.263356	CCAAGTACCTCAAGGACCGA	58.737	55.000	2.30	0.00	38.94	4.69
2034	2789	1.228675	CCTCCATGGCTATTGGGGC	60.229	63.158	6.96	0.00	33.01	5.80
2079	2834	1.737838	TGCTTGAGAATTACCAGCCG	58.262	50.000	5.99	0.00	0.00	5.52
2350	3105	1.543429	CGTTCAAGGCCCTCAAGACTT	60.543	52.381	0.00	0.00	0.00	3.01
2718	3670	2.558795	CAGTAGGATATGGTCGTCCCTG	59.441	54.545	0.00	0.00	35.00	4.45
2920	3890	4.844267	ACATCAGTTTTCGTGTAGTTTGC	58.156	39.130	0.00	0.00	0.00	3.68
3068	4061	3.895232	TCTTCTGGATGAACTGCTACC	57.105	47.619	0.00	0.00	0.00	3.18
3069	4062	3.445008	TCTTCTGGATGAACTGCTACCT	58.555	45.455	0.00	0.00	0.00	3.08
3123	4128	3.253188	CCTGAGCGGATTTTCAGTTTTGA	59.747	43.478	1.39	0.00	39.30	2.69
3246	4261	5.124036	AGAGTTCTGCATCTCCTAGTAGT	57.876	43.478	9.16	0.00	0.00	2.73
3247	4262	5.515106	AGAGTTCTGCATCTCCTAGTAGTT	58.485	41.667	9.16	0.00	0.00	2.24
3248	4263	5.359576	AGAGTTCTGCATCTCCTAGTAGTTG	59.640	44.000	9.16	0.00	0.00	3.16
3249	4264	5.020132	AGTTCTGCATCTCCTAGTAGTTGT	58.980	41.667	0.00	0.00	0.00	3.32
3250	4265	6.188407	AGTTCTGCATCTCCTAGTAGTTGTA	58.812	40.000	0.00	0.00	0.00	2.41
3251	4266	6.320164	AGTTCTGCATCTCCTAGTAGTTGTAG	59.680	42.308	5.48	5.48	33.01	2.74
3267	4282	9.021807	AGTAGTTGTAGAGTTCTGCATACTTAA	57.978	33.333	14.67	3.00	38.35	1.85

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
3	4	8.611654	TTATTAGTCCCCTTCGTATTTTATGC	57.388	34.615	0.00	0.00	0.00	3.14
10	11	6.785963	TCCTGATTTATTAGTCCCCTTCGTAT	59.214	38.462	0.00	0.00	0.00	3.06
53	54	8.859517	TTTTAAAAAGAGTAACCGAAACATGG	57.140	30.769	0.00	0.00	0.00	3.66
69	70	9.556030	GATAAGTCCGTTGGAGATTTTAAAAAG	57.444	33.333	4.44	0.00	29.39	2.27
75	76	7.703058	AAATGATAAGTCCGTTGGAGATTTT	57.297	32.000	0.00	0.00	29.39	1.82
115	117	6.184789	TGTCACCCTCCTAAATTTACAATCC	58.815	40.000	0.00	0.00	0.00	3.01
145	147	7.423199	TGATGTTACAGGTCTAACGATGATAC	58.577	38.462	0.00	0.00	30.33	2.24
155	157	7.959175	ACTTTACACTTGATGTTACAGGTCTA	58.041	34.615	0.00	0.00	43.19	2.59
158	160	6.238648	GCAACTTTACACTTGATGTTACAGGT	60.239	38.462	0.00	0.00	43.19	4.00
174	176	5.554822	TTCCATACCGATTGCAACTTTAC	57.445	39.130	0.00	0.00	0.00	2.01
178	180	5.659440	AAAATTCCATACCGATTGCAACT	57.341	34.783	0.00	0.00	0.00	3.16
185	187	8.514330	TTTGTAGCTAAAAATTCCATACCGAT	57.486	30.769	4.90	0.00	0.00	4.18
301	1004	4.486503	CTCTGGCTGGCTGGCTCC	62.487	72.222	18.27	4.53	42.34	4.70
311	1014	2.753029	GTCTGGGTTGCTCTGGCT	59.247	61.111	0.00	0.00	39.59	4.75
312	1015	2.360475	GGTCTGGGTTGCTCTGGC	60.360	66.667	0.00	0.00	39.26	4.85
313	1016	2.352805	GGGTCTGGGTTGCTCTGG	59.647	66.667	0.00	0.00	0.00	3.86
314	1017	2.046892	CGGGTCTGGGTTGCTCTG	60.047	66.667	0.00	0.00	0.00	3.35
315	1018	3.322466	CCGGGTCTGGGTTGCTCT	61.322	66.667	0.00	0.00	0.00	4.09
316	1019	3.607370	GACCGGGTCTGGGTTGCTC	62.607	68.421	19.92	0.00	38.07	4.26
352	1055	3.074412	AGTACAAATTTCTGTCCTGGCG	58.926	45.455	0.00	0.00	0.00	5.69
353	1056	3.366374	GCAGTACAAATTTCTGTCCTGGC	60.366	47.826	5.36	0.00	34.70	4.85
354	1057	4.074970	AGCAGTACAAATTTCTGTCCTGG	58.925	43.478	5.36	0.00	34.70	4.45
355	1058	5.163814	GCTAGCAGTACAAATTTCTGTCCTG	60.164	44.000	10.63	3.62	36.60	3.86
356	1059	4.938226	GCTAGCAGTACAAATTTCTGTCCT	59.062	41.667	10.63	1.05	0.00	3.85
357	1060	4.695455	TGCTAGCAGTACAAATTTCTGTCC	59.305	41.667	14.93	0.00	0.00	4.02
358	1061	5.862924	TGCTAGCAGTACAAATTTCTGTC	57.137	39.130	14.93	1.45	0.00	3.51
366	1069	4.811908	TGTTCGTATGCTAGCAGTACAAA	58.188	39.130	23.89	13.51	0.00	2.83
428	1165	1.202417	AGGTGATAGGTCAATGACGCG	60.202	52.381	3.53	3.53	35.80	6.01
429	1166	2.474816	GAGGTGATAGGTCAATGACGC	58.525	52.381	7.35	0.69	35.80	5.19
553	1302	3.491792	CCGATGCTTCTACTCCTCCTTTC	60.492	52.174	0.00	0.00	0.00	2.62
626	1377	0.546267	AAGAAGGCCAGAGCAGAGGA	60.546	55.000	5.01	0.00	42.56	3.71
627	1378	0.107752	GAAGAAGGCCAGAGCAGAGG	60.108	60.000	5.01	0.00	42.56	3.69
628	1379	0.107752	GGAAGAAGGCCAGAGCAGAG	60.108	60.000	5.01	0.00	42.56	3.35
629	1380	0.546267	AGGAAGAAGGCCAGAGCAGA	60.546	55.000	5.01	0.00	42.56	4.26
630	1381	0.107752	GAGGAAGAAGGCCAGAGCAG	60.108	60.000	5.01	0.00	42.56	4.24
631	1382	1.557269	GGAGGAAGAAGGCCAGAGCA	61.557	60.000	5.01	0.00	42.56	4.26
632	1383	1.223211	GGAGGAAGAAGGCCAGAGC	59.777	63.158	5.01	0.00	38.76	4.09
633	1384	1.209261	GAAGGAGGAAGAAGGCCAGAG	59.791	57.143	5.01	0.00	0.00	3.35
634	1385	1.280457	GAAGGAGGAAGAAGGCCAGA	58.720	55.000	5.01	0.00	0.00	3.86
635	1386	0.254462	GGAAGGAGGAAGAAGGCCAG	59.746	60.000	5.01	0.00	0.00	4.85
711	1464	1.992277	CTGGAGGTGGAGGTGGAGG	60.992	68.421	0.00	0.00	0.00	4.30
712	1465	1.079256	TCTGGAGGTGGAGGTGGAG	59.921	63.158	0.00	0.00	0.00	3.86
713	1466	1.229209	GTCTGGAGGTGGAGGTGGA	60.229	63.158	0.00	0.00	0.00	4.02
714	1467	1.536418	TGTCTGGAGGTGGAGGTGG	60.536	63.158	0.00	0.00	0.00	4.61
715	1468	1.674057	GTGTCTGGAGGTGGAGGTG	59.326	63.158	0.00	0.00	0.00	4.00
716	1469	1.536662	GGTGTCTGGAGGTGGAGGT	60.537	63.158	0.00	0.00	0.00	3.85
717	1470	2.294078	GGGTGTCTGGAGGTGGAGG	61.294	68.421	0.00	0.00	0.00	4.30
718	1471	1.536418	TGGGTGTCTGGAGGTGGAG	60.536	63.158	0.00	0.00	0.00	3.86
923	1677	2.200067	CAGAAATGCAGACGCCTCTAG	58.800	52.381	0.00	0.00	37.32	2.43
947	1702	3.810373	CCAAATCGAACCGAACAAGAAG	58.190	45.455	0.00	0.00	39.99	2.85
951	1706	1.600023	AGCCAAATCGAACCGAACAA	58.400	45.000	0.00	0.00	39.99	2.83
952	1707	1.265635	CAAGCCAAATCGAACCGAACA	59.734	47.619	0.00	0.00	39.99	3.18
953	1708	1.401018	CCAAGCCAAATCGAACCGAAC	60.401	52.381	0.00	0.00	39.99	3.95
954	1709	0.878416	CCAAGCCAAATCGAACCGAA	59.122	50.000	0.00	0.00	39.99	4.30
955	1710	0.250553	ACCAAGCCAAATCGAACCGA	60.251	50.000	0.00	0.00	41.13	4.69
956	1711	0.109781	CACCAAGCCAAATCGAACCG	60.110	55.000	0.00	0.00	0.00	4.44
957	1712	0.388520	GCACCAAGCCAAATCGAACC	60.389	55.000	0.00	0.00	37.23	3.62
1458	2213	4.722700	TTCTCGCAGGGCTTGGGC	62.723	66.667	8.89	0.00	39.45	5.36
1887	2642	2.613223	GAGGTACTTGGTGAGCACCTTC	60.613	54.545	19.47	6.44	46.93	3.46
1917	2672	1.301479	GTCGGCTTCAAAGACCGGT	60.301	57.895	6.92	6.92	42.18	5.28
2034	2789	1.548719	TCGTACCTGTCCACCAAGATG	59.451	52.381	0.00	0.00	0.00	2.90
2553	3473	6.200286	CAGTTAGCGATTTATAGAAGCGGAAA	59.800	38.462	0.00	0.00	0.00	3.13
2658	3610	5.472137	AGCACACGAACAATAACATTTAGGT	59.528	36.000	0.00	0.00	0.00	3.08
2718	3670	4.081476	AGGGAAGCAAAATAATTGGCTCAC	60.081	41.667	0.00	0.00	45.34	3.51
2909	3878	2.221055	GGTCAGAACTGCAAACTACACG	59.779	50.000	0.00	0.00	0.00	4.49
2920	3890	5.528690	TCAACTCTCAATTTGGTCAGAACTG	59.471	40.000	0.00	0.00	0.00	3.16
3113	4106	3.182972	GCTACGCTACGTTCAAAACTGAA	59.817	43.478	0.00	0.00	41.54	3.02
3123	4128	1.269936	ACAAACCTGCTACGCTACGTT	60.270	47.619	0.00	0.00	41.54	3.99
3164	4169	6.376864	TGAAAATGAACCAGACAAGTCTCAAA	59.623	34.615	0.00	0.00	37.98	2.69
3246	4261	7.396339	TCCTCTTAAGTATGCAGAACTCTACAA	59.604	37.037	1.63	0.00	0.00	2.41
3247	4262	6.890268	TCCTCTTAAGTATGCAGAACTCTACA	59.110	38.462	1.63	0.00	0.00	2.74
3248	4263	7.197703	GTCCTCTTAAGTATGCAGAACTCTAC	58.802	42.308	1.63	0.00	0.00	2.59
3249	4264	6.321690	GGTCCTCTTAAGTATGCAGAACTCTA	59.678	42.308	1.63	0.00	0.00	2.43
3250	4265	5.128008	GGTCCTCTTAAGTATGCAGAACTCT	59.872	44.000	1.63	0.19	0.00	3.24
3251	4266	5.353111	GGTCCTCTTAAGTATGCAGAACTC	58.647	45.833	1.63	0.00	0.00	3.01
3267	4282	2.291605	GCCAAAAGTTATGGGGTCCTCT	60.292	50.000	0.00	0.00	38.44	3.69

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.