Multiple sequence alignment - TraesCS4A01G115800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G115800 chr4A 100.000 2210 0 0 1 2210 140788029 140785820 0.000000e+00 4082.0
1 TraesCS4A01G115800 chr4A 95.349 86 3 1 443 527 140786535 140786450 3.830000e-28 135.0
2 TraesCS4A01G115800 chr4A 95.349 86 3 1 1495 1580 140787587 140787503 3.830000e-28 135.0
3 TraesCS4A01G115800 chr7A 94.561 717 36 2 1495 2210 660324525 660323811 0.000000e+00 1105.0
4 TraesCS4A01G115800 chr7A 94.561 717 32 4 1495 2210 22284698 22285408 0.000000e+00 1101.0
5 TraesCS4A01G115800 chr7A 87.417 302 26 8 1 292 25412404 25412703 9.780000e-89 337.0
6 TraesCS4A01G115800 chr7A 93.805 113 5 1 412 524 22284670 22284780 3.770000e-38 169.0
7 TraesCS4A01G115800 chr7A 92.035 113 7 1 415 527 660324550 660324440 8.170000e-35 158.0
8 TraesCS4A01G115800 chr7A 80.451 133 19 5 2078 2210 199403260 199403385 6.500000e-16 95.3
9 TraesCS4A01G115800 chr2D 87.133 987 89 17 530 1494 527727290 527726320 0.000000e+00 1085.0
10 TraesCS4A01G115800 chr2D 91.892 370 29 1 1727 2095 465797368 465796999 1.170000e-142 516.0
11 TraesCS4A01G115800 chr2D 87.748 302 25 8 1 292 44374758 44374459 2.100000e-90 342.0
12 TraesCS4A01G115800 chr3A 93.584 717 41 5 1495 2210 433294944 433295656 0.000000e+00 1064.0
13 TraesCS4A01G115800 chr3A 91.848 368 29 1 1733 2099 263766119 263765752 1.510000e-141 512.0
14 TraesCS4A01G115800 chr5D 86.715 971 96 22 530 1498 331080111 331081050 0.000000e+00 1048.0
15 TraesCS4A01G115800 chr5D 88.667 600 52 8 897 1494 331116390 331116975 0.000000e+00 717.0
16 TraesCS4A01G115800 chr5D 88.519 601 53 8 896 1494 330949722 330950308 0.000000e+00 713.0
17 TraesCS4A01G115800 chr5D 88.519 601 53 8 896 1494 330951535 330952121 0.000000e+00 713.0
18 TraesCS4A01G115800 chr5D 88.519 601 53 8 896 1494 330955155 330955741 0.000000e+00 713.0
19 TraesCS4A01G115800 chr5D 88.353 601 54 8 896 1494 330956064 330956650 0.000000e+00 708.0
20 TraesCS4A01G115800 chr5D 87.928 613 58 8 888 1498 331055588 331054990 0.000000e+00 708.0
21 TraesCS4A01G115800 chr5D 87.687 601 58 8 896 1494 330945189 330945775 0.000000e+00 686.0
22 TraesCS4A01G115800 chr5D 86.855 601 58 10 896 1494 330946098 330946679 0.000000e+00 652.0
23 TraesCS4A01G115800 chr5D 86.689 601 59 10 896 1494 330950631 330951212 0.000000e+00 647.0
24 TraesCS4A01G115800 chr5D 86.356 601 61 12 896 1494 330948818 330949399 8.610000e-179 636.0
25 TraesCS4A01G115800 chr5D 86.356 601 61 10 896 1494 330952444 330953025 8.610000e-179 636.0
26 TraesCS4A01G115800 chr5D 86.391 338 34 7 530 867 330889525 330889200 2.090000e-95 359.0
27 TraesCS4A01G115800 chr5D 86.607 336 30 9 530 865 330952133 330952453 7.500000e-95 357.0
28 TraesCS4A01G115800 chr5D 86.310 336 31 9 530 865 330945787 330946107 3.490000e-93 351.0
29 TraesCS4A01G115800 chr5D 86.310 336 31 9 530 865 330950320 330950640 3.490000e-93 351.0
30 TraesCS4A01G115800 chr5D 86.310 336 31 9 530 865 330955753 330956073 3.490000e-93 351.0
31 TraesCS4A01G115800 chr5D 85.207 338 35 7 530 867 331116078 331116400 1.260000e-87 333.0
32 TraesCS4A01G115800 chr5D 92.920 226 15 1 530 755 330954850 330955074 5.880000e-86 327.0
33 TraesCS4A01G115800 chr6B 89.261 717 59 9 1495 2210 682958169 682957470 0.000000e+00 881.0
34 TraesCS4A01G115800 chr6B 90.379 634 43 4 1498 2130 683116834 683116218 0.000000e+00 817.0
35 TraesCS4A01G115800 chr6B 89.901 406 25 4 1805 2210 682914852 682914463 1.960000e-140 508.0
36 TraesCS4A01G115800 chr6B 93.467 199 13 0 1555 1753 682922137 682921939 1.660000e-76 296.0
37 TraesCS4A01G115800 chr2A 90.300 567 46 5 1495 2055 706856877 706857440 0.000000e+00 734.0
38 TraesCS4A01G115800 chr2A 86.275 153 4 8 2057 2208 706864941 706865077 1.370000e-32 150.0
39 TraesCS4A01G115800 chr7D 92.703 370 26 1 1727 2095 501294752 501294383 1.160000e-147 532.0
40 TraesCS4A01G115800 chr7D 93.484 353 23 0 1727 2079 196815768 196816120 1.940000e-145 525.0
41 TraesCS4A01G115800 chr7D 88.079 302 24 8 1 292 537263945 537263646 4.520000e-92 348.0
42 TraesCS4A01G115800 chr1B 88.196 449 19 7 1 416 647525556 647525109 2.530000e-139 505.0
43 TraesCS4A01G115800 chr1B 89.086 394 12 4 1 364 647535775 647535383 5.560000e-126 460.0
44 TraesCS4A01G115800 chr7B 88.411 302 23 9 1 292 7025294 7024995 9.710000e-94 353.0
45 TraesCS4A01G115800 chr5B 88.411 302 23 9 1 292 447171787 447171488 9.710000e-94 353.0
46 TraesCS4A01G115800 chr6D 87.459 303 25 8 1 292 472407861 472407561 9.780000e-89 337.0
47 TraesCS4A01G115800 chr4D 87.129 303 26 9 1 292 299348249 299347949 4.550000e-87 331.0
48 TraesCS4A01G115800 chr4D 83.459 133 15 5 2078 2210 242131887 242132012 1.390000e-22 117.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G115800 chr4A 140785820 140788029 2209 True 1450.666667 4082 96.899333 1 2210 3 chr4A.!!$R1 2209
1 TraesCS4A01G115800 chr7A 22284670 22285408 738 False 635.000000 1101 94.183000 412 2210 2 chr7A.!!$F3 1798
2 TraesCS4A01G115800 chr7A 660323811 660324550 739 True 631.500000 1105 93.298000 415 2210 2 chr7A.!!$R1 1795
3 TraesCS4A01G115800 chr2D 527726320 527727290 970 True 1085.000000 1085 87.133000 530 1494 1 chr2D.!!$R3 964
4 TraesCS4A01G115800 chr3A 433294944 433295656 712 False 1064.000000 1064 93.584000 1495 2210 1 chr3A.!!$F1 715
5 TraesCS4A01G115800 chr5D 331080111 331081050 939 False 1048.000000 1048 86.715000 530 1498 1 chr5D.!!$F1 968
6 TraesCS4A01G115800 chr5D 331054990 331055588 598 True 708.000000 708 87.928000 888 1498 1 chr5D.!!$R2 610
7 TraesCS4A01G115800 chr5D 330945189 330956650 11461 False 560.071429 713 87.593571 530 1494 14 chr5D.!!$F2 964
8 TraesCS4A01G115800 chr5D 331116078 331116975 897 False 525.000000 717 86.937000 530 1494 2 chr5D.!!$F3 964
9 TraesCS4A01G115800 chr6B 682957470 682958169 699 True 881.000000 881 89.261000 1495 2210 1 chr6B.!!$R3 715
10 TraesCS4A01G115800 chr6B 683116218 683116834 616 True 817.000000 817 90.379000 1498 2130 1 chr6B.!!$R4 632
11 TraesCS4A01G115800 chr2A 706856877 706857440 563 False 734.000000 734 90.300000 1495 2055 1 chr2A.!!$F1 560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
408 409 0.03438 TAGGAGCTACCGAGTGTGCT 60.034 55.0 0.0 0.0 44.74 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1376 11402 0.688749 GAGGATTTGCCCTTGCCCAT 60.689 55.0 0.0 0.0 36.49 4.0 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 2.949451 ACGCAGAGATGTCAGGTTAG 57.051 50.000 0.00 0.00 0.00 2.34
22 23 1.134965 ACGCAGAGATGTCAGGTTAGC 60.135 52.381 0.00 0.00 0.00 3.09
23 24 1.135915 CGCAGAGATGTCAGGTTAGCT 59.864 52.381 0.00 0.00 0.00 3.32
24 25 2.548875 GCAGAGATGTCAGGTTAGCTG 58.451 52.381 4.89 4.89 0.00 4.24
25 26 2.167281 GCAGAGATGTCAGGTTAGCTGA 59.833 50.000 10.28 10.28 0.00 4.26
26 27 3.368843 GCAGAGATGTCAGGTTAGCTGAA 60.369 47.826 16.00 7.16 32.15 3.02
28 29 4.629200 CAGAGATGTCAGGTTAGCTGAAAC 59.371 45.833 16.00 10.01 32.15 2.78
37 38 4.394439 GGTTAGCTGAAACCCAAACAAA 57.606 40.909 7.11 0.00 42.68 2.83
39 40 4.142026 GGTTAGCTGAAACCCAAACAAAGT 60.142 41.667 7.11 0.00 42.68 2.66
40 41 5.416083 GTTAGCTGAAACCCAAACAAAGTT 58.584 37.500 0.00 0.00 0.00 2.66
41 42 6.406065 GGTTAGCTGAAACCCAAACAAAGTTA 60.406 38.462 7.11 0.00 42.68 2.24
42 43 5.669164 AGCTGAAACCCAAACAAAGTTAA 57.331 34.783 0.00 0.00 0.00 2.01
43 44 5.416083 AGCTGAAACCCAAACAAAGTTAAC 58.584 37.500 0.00 0.00 0.00 2.01
44 45 5.046950 AGCTGAAACCCAAACAAAGTTAACA 60.047 36.000 8.61 0.00 0.00 2.41
45 46 5.062934 GCTGAAACCCAAACAAAGTTAACAC 59.937 40.000 8.61 0.00 0.00 3.32
46 47 5.162075 TGAAACCCAAACAAAGTTAACACG 58.838 37.500 8.61 0.00 0.00 4.49
47 48 3.786516 ACCCAAACAAAGTTAACACGG 57.213 42.857 8.61 0.00 0.00 4.94
48 49 3.090790 ACCCAAACAAAGTTAACACGGT 58.909 40.909 8.61 0.00 0.00 4.83
49 50 3.119424 ACCCAAACAAAGTTAACACGGTG 60.119 43.478 8.61 6.58 0.00 4.94
50 51 3.128938 CCCAAACAAAGTTAACACGGTGA 59.871 43.478 16.29 0.00 0.00 4.02
51 52 4.202070 CCCAAACAAAGTTAACACGGTGAT 60.202 41.667 16.29 5.51 0.00 3.06
52 53 4.737765 CCAAACAAAGTTAACACGGTGATG 59.262 41.667 16.29 5.74 0.00 3.07
53 54 4.561735 AACAAAGTTAACACGGTGATGG 57.438 40.909 16.29 0.00 0.00 3.51
56 57 3.478857 AAGTTAACACGGTGATGGTCA 57.521 42.857 16.29 0.00 0.00 4.02
57 58 2.762745 AGTTAACACGGTGATGGTCAC 58.237 47.619 16.29 1.54 46.23 3.67
66 67 2.770164 GTGATGGTCACAAGGCTACT 57.230 50.000 5.28 0.00 46.22 2.57
67 68 3.887621 GTGATGGTCACAAGGCTACTA 57.112 47.619 5.28 0.00 46.22 1.82
68 69 3.786635 GTGATGGTCACAAGGCTACTAG 58.213 50.000 5.28 0.00 46.22 2.57
71 72 4.716784 TGATGGTCACAAGGCTACTAGATT 59.283 41.667 0.00 0.00 0.00 2.40
72 73 5.189736 TGATGGTCACAAGGCTACTAGATTT 59.810 40.000 0.00 0.00 0.00 2.17
74 75 5.876357 TGGTCACAAGGCTACTAGATTTTT 58.124 37.500 0.00 0.00 0.00 1.94
99 100 8.791355 TTTTCTAAACGCCTTAAAATCTGAAC 57.209 30.769 0.00 0.00 0.00 3.18
100 101 7.739498 TTCTAAACGCCTTAAAATCTGAACT 57.261 32.000 0.00 0.00 0.00 3.01
101 102 7.129109 TCTAAACGCCTTAAAATCTGAACTG 57.871 36.000 0.00 0.00 0.00 3.16
102 103 6.932400 TCTAAACGCCTTAAAATCTGAACTGA 59.068 34.615 0.00 0.00 0.00 3.41
103 104 6.385649 AAACGCCTTAAAATCTGAACTGAA 57.614 33.333 0.00 0.00 0.00 3.02
105 106 5.063880 ACGCCTTAAAATCTGAACTGAACT 58.936 37.500 0.00 0.00 0.00 3.01
106 107 5.179555 ACGCCTTAAAATCTGAACTGAACTC 59.820 40.000 0.00 0.00 0.00 3.01
107 108 5.409826 CGCCTTAAAATCTGAACTGAACTCT 59.590 40.000 0.00 0.00 0.00 3.24
108 109 6.073003 CGCCTTAAAATCTGAACTGAACTCTT 60.073 38.462 0.00 0.00 0.00 2.85
109 110 7.117812 CGCCTTAAAATCTGAACTGAACTCTTA 59.882 37.037 0.00 0.00 0.00 2.10
110 111 8.951243 GCCTTAAAATCTGAACTGAACTCTTAT 58.049 33.333 0.00 0.00 0.00 1.73
148 149 9.952030 TGTCATCTAAATATTACAGTTTGGACA 57.048 29.630 0.00 0.00 29.51 4.02
150 151 9.613428 TCATCTAAATATTACAGTTTGGACAGG 57.387 33.333 0.00 0.00 29.51 4.00
151 152 9.613428 CATCTAAATATTACAGTTTGGACAGGA 57.387 33.333 0.00 0.00 29.51 3.86
152 153 9.614792 ATCTAAATATTACAGTTTGGACAGGAC 57.385 33.333 0.00 0.00 29.51 3.85
153 154 8.598916 TCTAAATATTACAGTTTGGACAGGACA 58.401 33.333 0.00 0.00 0.00 4.02
154 155 9.226606 CTAAATATTACAGTTTGGACAGGACAA 57.773 33.333 0.00 0.00 0.00 3.18
155 156 8.650143 AAATATTACAGTTTGGACAGGACAAT 57.350 30.769 0.00 0.00 0.00 2.71
157 158 2.586425 ACAGTTTGGACAGGACAATGG 58.414 47.619 0.00 0.00 0.00 3.16
158 159 2.091885 ACAGTTTGGACAGGACAATGGT 60.092 45.455 0.00 0.00 0.00 3.55
160 161 1.613437 GTTTGGACAGGACAATGGTGG 59.387 52.381 0.00 0.00 0.00 4.61
161 162 1.144691 TTGGACAGGACAATGGTGGA 58.855 50.000 0.00 0.00 0.00 4.02
164 165 1.073923 GGACAGGACAATGGTGGAACT 59.926 52.381 0.00 0.00 36.74 3.01
165 166 2.489073 GGACAGGACAATGGTGGAACTT 60.489 50.000 0.00 0.00 36.74 2.66
166 167 3.222603 GACAGGACAATGGTGGAACTTT 58.777 45.455 0.00 0.00 36.74 2.66
167 168 2.958355 ACAGGACAATGGTGGAACTTTG 59.042 45.455 0.00 0.00 36.47 2.77
168 169 3.221771 CAGGACAATGGTGGAACTTTGA 58.778 45.455 0.00 0.00 35.13 2.69
169 170 3.254166 CAGGACAATGGTGGAACTTTGAG 59.746 47.826 0.00 0.00 35.13 3.02
170 171 2.029918 GGACAATGGTGGAACTTTGAGC 60.030 50.000 0.00 0.00 35.13 4.26
171 172 1.608590 ACAATGGTGGAACTTTGAGCG 59.391 47.619 0.00 0.00 35.13 5.03
172 173 1.879380 CAATGGTGGAACTTTGAGCGA 59.121 47.619 0.00 0.00 36.74 4.93
173 174 2.270352 ATGGTGGAACTTTGAGCGAA 57.730 45.000 0.00 0.00 36.74 4.70
174 175 1.305201 TGGTGGAACTTTGAGCGAAC 58.695 50.000 0.00 0.00 36.74 3.95
175 176 1.305201 GGTGGAACTTTGAGCGAACA 58.695 50.000 0.00 0.00 36.74 3.18
177 178 2.293399 GGTGGAACTTTGAGCGAACATT 59.707 45.455 0.00 0.00 36.74 2.71
180 181 4.803613 GTGGAACTTTGAGCGAACATTTTT 59.196 37.500 0.00 0.00 0.00 1.94
204 205 5.670792 TCCTTCGGTTTTTAGAGCTATCA 57.329 39.130 0.00 0.00 0.00 2.15
205 206 5.416947 TCCTTCGGTTTTTAGAGCTATCAC 58.583 41.667 0.00 0.00 0.00 3.06
206 207 5.187186 TCCTTCGGTTTTTAGAGCTATCACT 59.813 40.000 0.00 0.00 0.00 3.41
208 209 7.069578 TCCTTCGGTTTTTAGAGCTATCACTAT 59.930 37.037 0.00 0.00 0.00 2.12
209 210 8.358148 CCTTCGGTTTTTAGAGCTATCACTATA 58.642 37.037 0.00 0.00 0.00 1.31
210 211 9.915629 CTTCGGTTTTTAGAGCTATCACTATAT 57.084 33.333 0.00 0.00 0.00 0.86
221 222 8.482128 AGAGCTATCACTATATATTTTGGAGGC 58.518 37.037 0.00 0.00 0.00 4.70
223 224 8.605947 AGCTATCACTATATATTTTGGAGGCAA 58.394 33.333 0.00 0.00 0.00 4.52
226 227 7.510549 TCACTATATATTTTGGAGGCAAAGC 57.489 36.000 0.00 0.00 0.00 3.51
227 228 7.290061 TCACTATATATTTTGGAGGCAAAGCT 58.710 34.615 0.00 0.00 0.00 3.74
228 229 8.436778 TCACTATATATTTTGGAGGCAAAGCTA 58.563 33.333 0.00 0.00 0.00 3.32
230 231 9.454859 ACTATATATTTTGGAGGCAAAGCTATC 57.545 33.333 0.00 0.00 0.00 2.08
231 232 7.709149 ATATATTTTGGAGGCAAAGCTATCC 57.291 36.000 0.00 6.78 35.84 2.59
232 233 2.143876 TTTGGAGGCAAAGCTATCCC 57.856 50.000 9.98 0.00 34.93 3.85
233 234 1.298953 TTGGAGGCAAAGCTATCCCT 58.701 50.000 9.98 0.00 34.93 4.20
234 235 0.548031 TGGAGGCAAAGCTATCCCTG 59.452 55.000 3.92 0.00 34.93 4.45
235 236 0.548510 GGAGGCAAAGCTATCCCTGT 59.451 55.000 3.92 0.00 31.57 4.00
236 237 1.768870 GGAGGCAAAGCTATCCCTGTA 59.231 52.381 3.92 0.00 31.57 2.74
237 238 2.485657 GGAGGCAAAGCTATCCCTGTAC 60.486 54.545 3.92 0.00 31.57 2.90
238 239 1.490910 AGGCAAAGCTATCCCTGTACC 59.509 52.381 0.00 0.00 0.00 3.34
240 241 2.356741 GGCAAAGCTATCCCTGTACCAA 60.357 50.000 0.00 0.00 0.00 3.67
241 242 2.945668 GCAAAGCTATCCCTGTACCAAG 59.054 50.000 0.00 0.00 0.00 3.61
242 243 3.545703 CAAAGCTATCCCTGTACCAAGG 58.454 50.000 0.00 0.00 37.05 3.61
244 245 2.683768 AGCTATCCCTGTACCAAGGAG 58.316 52.381 0.76 0.00 40.02 3.69
245 246 2.247635 AGCTATCCCTGTACCAAGGAGA 59.752 50.000 0.76 0.00 40.02 3.71
249 250 0.984230 CCCTGTACCAAGGAGAGCAA 59.016 55.000 0.76 0.00 40.02 3.91
252 253 2.039084 CCTGTACCAAGGAGAGCAACTT 59.961 50.000 0.00 0.00 40.02 2.66
253 254 3.070018 CTGTACCAAGGAGAGCAACTTG 58.930 50.000 0.00 0.00 42.77 3.16
254 255 2.703536 TGTACCAAGGAGAGCAACTTGA 59.296 45.455 6.02 0.00 45.22 3.02
255 256 3.135712 TGTACCAAGGAGAGCAACTTGAA 59.864 43.478 6.02 0.00 45.22 2.69
256 257 3.515602 ACCAAGGAGAGCAACTTGAAT 57.484 42.857 6.02 0.00 45.22 2.57
257 258 4.640771 ACCAAGGAGAGCAACTTGAATA 57.359 40.909 6.02 0.00 45.22 1.75
259 260 5.006386 ACCAAGGAGAGCAACTTGAATAAG 58.994 41.667 6.02 0.00 45.22 1.73
260 261 5.221925 ACCAAGGAGAGCAACTTGAATAAGA 60.222 40.000 6.02 0.00 45.22 2.10
261 262 5.707298 CCAAGGAGAGCAACTTGAATAAGAA 59.293 40.000 6.02 0.00 45.22 2.52
262 263 6.348868 CCAAGGAGAGCAACTTGAATAAGAAC 60.349 42.308 6.02 0.00 45.22 3.01
263 264 5.869579 AGGAGAGCAACTTGAATAAGAACA 58.130 37.500 0.00 0.00 37.36 3.18
264 265 5.703130 AGGAGAGCAACTTGAATAAGAACAC 59.297 40.000 0.00 0.00 37.36 3.32
265 266 5.106515 GGAGAGCAACTTGAATAAGAACACC 60.107 44.000 0.00 0.00 37.36 4.16
267 268 6.769512 AGAGCAACTTGAATAAGAACACCTA 58.230 36.000 0.00 0.00 37.36 3.08
268 269 7.398024 AGAGCAACTTGAATAAGAACACCTAT 58.602 34.615 0.00 0.00 37.36 2.57
269 270 8.540388 AGAGCAACTTGAATAAGAACACCTATA 58.460 33.333 0.00 0.00 37.36 1.31
270 271 9.162764 GAGCAACTTGAATAAGAACACCTATAA 57.837 33.333 0.00 0.00 37.36 0.98
271 272 9.167311 AGCAACTTGAATAAGAACACCTATAAG 57.833 33.333 0.00 0.00 37.36 1.73
274 275 9.740710 AACTTGAATAAGAACACCTATAAGCTT 57.259 29.630 3.48 3.48 37.36 3.74
286 287 9.780186 AACACCTATAAGCTTTATACTGAATCC 57.220 33.333 3.20 0.00 0.00 3.01
288 289 8.598041 CACCTATAAGCTTTATACTGAATCCCT 58.402 37.037 3.20 0.00 0.00 4.20
289 290 8.598041 ACCTATAAGCTTTATACTGAATCCCTG 58.402 37.037 3.20 0.00 0.00 4.45
290 291 8.816894 CCTATAAGCTTTATACTGAATCCCTGA 58.183 37.037 3.20 0.00 0.00 3.86
303 304 8.930846 ACTGAATCCCTGATATTTTTATGAGG 57.069 34.615 0.00 0.00 31.69 3.86
304 305 8.727149 ACTGAATCCCTGATATTTTTATGAGGA 58.273 33.333 0.70 0.00 33.39 3.71
307 308 9.799106 GAATCCCTGATATTTTTATGAGGAAGA 57.201 33.333 0.70 0.00 33.39 2.87
308 309 9.579932 AATCCCTGATATTTTTATGAGGAAGAC 57.420 33.333 0.70 0.00 33.39 3.01
310 311 8.213679 TCCCTGATATTTTTATGAGGAAGACTG 58.786 37.037 0.70 0.00 33.39 3.51
316 317 7.888250 ATTTTTATGAGGAAGACTGAATCCC 57.112 36.000 0.00 0.00 36.31 3.85
317 318 6.642733 TTTTATGAGGAAGACTGAATCCCT 57.357 37.500 0.00 0.00 36.31 4.20
318 319 5.620738 TTATGAGGAAGACTGAATCCCTG 57.379 43.478 0.00 0.00 36.31 4.45
319 320 3.190383 TGAGGAAGACTGAATCCCTGA 57.810 47.619 0.00 0.00 36.31 3.86
320 321 3.729108 TGAGGAAGACTGAATCCCTGAT 58.271 45.455 0.00 0.00 36.31 2.90
323 324 4.853007 AGGAAGACTGAATCCCTGATTTG 58.147 43.478 0.00 0.00 36.31 2.32
324 325 4.290722 AGGAAGACTGAATCCCTGATTTGT 59.709 41.667 0.00 0.00 36.31 2.83
326 327 5.105997 GGAAGACTGAATCCCTGATTTGTTG 60.106 44.000 0.00 0.00 31.89 3.33
327 328 5.246981 AGACTGAATCCCTGATTTGTTGA 57.753 39.130 0.00 0.00 31.89 3.18
328 329 5.634118 AGACTGAATCCCTGATTTGTTGAA 58.366 37.500 0.00 0.00 31.89 2.69
329 330 6.070656 AGACTGAATCCCTGATTTGTTGAAA 58.929 36.000 0.00 0.00 31.89 2.69
330 331 6.015940 AGACTGAATCCCTGATTTGTTGAAAC 60.016 38.462 0.00 0.00 31.89 2.78
331 332 5.835280 ACTGAATCCCTGATTTGTTGAAACT 59.165 36.000 0.00 0.00 31.89 2.66
332 333 7.004086 ACTGAATCCCTGATTTGTTGAAACTA 58.996 34.615 0.00 0.00 31.89 2.24
334 335 6.208599 TGAATCCCTGATTTGTTGAAACTACC 59.791 38.462 0.00 0.00 31.89 3.18
335 336 5.055265 TCCCTGATTTGTTGAAACTACCA 57.945 39.130 0.00 0.00 0.00 3.25
339 340 6.438763 CCTGATTTGTTGAAACTACCAAGAC 58.561 40.000 0.00 0.00 0.00 3.01
340 341 6.039270 CCTGATTTGTTGAAACTACCAAGACA 59.961 38.462 0.00 0.00 0.00 3.41
341 342 6.791303 TGATTTGTTGAAACTACCAAGACAC 58.209 36.000 0.00 0.00 0.00 3.67
342 343 6.601613 TGATTTGTTGAAACTACCAAGACACT 59.398 34.615 0.00 0.00 0.00 3.55
343 344 7.771361 TGATTTGTTGAAACTACCAAGACACTA 59.229 33.333 0.00 0.00 0.00 2.74
344 345 7.548196 TTTGTTGAAACTACCAAGACACTAG 57.452 36.000 0.00 0.00 0.00 2.57
345 346 6.229936 TGTTGAAACTACCAAGACACTAGT 57.770 37.500 0.00 0.00 0.00 2.57
346 347 6.646267 TGTTGAAACTACCAAGACACTAGTT 58.354 36.000 0.00 0.00 33.09 2.24
348 349 6.474140 TGAAACTACCAAGACACTAGTTCA 57.526 37.500 0.00 0.00 30.95 3.18
349 350 6.513180 TGAAACTACCAAGACACTAGTTCAG 58.487 40.000 0.00 0.00 30.95 3.02
350 351 6.322969 TGAAACTACCAAGACACTAGTTCAGA 59.677 38.462 0.00 0.00 30.95 3.27
351 352 6.726490 AACTACCAAGACACTAGTTCAGAA 57.274 37.500 0.00 0.00 0.00 3.02
353 354 7.304497 ACTACCAAGACACTAGTTCAGAATT 57.696 36.000 0.00 0.00 0.00 2.17
355 356 5.552178 ACCAAGACACTAGTTCAGAATTCC 58.448 41.667 0.65 0.00 0.00 3.01
357 358 6.497259 ACCAAGACACTAGTTCAGAATTCCTA 59.503 38.462 0.65 0.00 0.00 2.94
359 360 7.310113 CCAAGACACTAGTTCAGAATTCCTACT 60.310 40.741 0.65 5.95 0.00 2.57
360 361 8.740906 CAAGACACTAGTTCAGAATTCCTACTA 58.259 37.037 0.65 6.77 0.00 1.82
362 363 8.330247 AGACACTAGTTCAGAATTCCTACTAGA 58.670 37.037 28.27 9.08 40.28 2.43
367 368 9.515226 CTAGTTCAGAATTCCTACTAGATAGCT 57.485 37.037 22.50 0.00 40.28 3.32
368 369 8.177119 AGTTCAGAATTCCTACTAGATAGCTG 57.823 38.462 0.65 0.00 0.00 4.24
369 370 6.582677 TCAGAATTCCTACTAGATAGCTGC 57.417 41.667 0.65 0.00 0.00 5.25
370 371 6.071320 TCAGAATTCCTACTAGATAGCTGCA 58.929 40.000 1.02 0.00 0.00 4.41
372 373 7.890655 TCAGAATTCCTACTAGATAGCTGCATA 59.109 37.037 1.02 0.00 0.00 3.14
373 374 8.190122 CAGAATTCCTACTAGATAGCTGCATAG 58.810 40.741 1.02 0.00 0.00 2.23
374 375 7.893302 AGAATTCCTACTAGATAGCTGCATAGT 59.107 37.037 1.02 4.16 33.27 2.12
376 377 5.502079 TCCTACTAGATAGCTGCATAGTCC 58.498 45.833 1.02 0.00 31.25 3.85
379 380 4.991776 ACTAGATAGCTGCATAGTCCAGA 58.008 43.478 1.02 0.00 32.03 3.86
380 381 5.579047 ACTAGATAGCTGCATAGTCCAGAT 58.421 41.667 1.02 0.00 33.03 2.90
381 382 6.015918 ACTAGATAGCTGCATAGTCCAGATT 58.984 40.000 1.02 0.00 30.66 2.40
382 383 5.149973 AGATAGCTGCATAGTCCAGATTG 57.850 43.478 1.02 0.00 30.66 2.67
383 384 2.634815 AGCTGCATAGTCCAGATTGG 57.365 50.000 1.02 0.00 39.43 3.16
384 385 1.842562 AGCTGCATAGTCCAGATTGGT 59.157 47.619 1.02 0.00 39.03 3.67
385 386 3.041211 AGCTGCATAGTCCAGATTGGTA 58.959 45.455 1.02 0.00 39.03 3.25
386 387 3.649981 AGCTGCATAGTCCAGATTGGTAT 59.350 43.478 1.02 0.00 39.03 2.73
388 389 4.932200 GCTGCATAGTCCAGATTGGTATAC 59.068 45.833 0.00 0.00 39.03 1.47
392 393 6.437477 TGCATAGTCCAGATTGGTATACTAGG 59.563 42.308 2.25 0.00 39.03 3.02
395 396 5.081032 AGTCCAGATTGGTATACTAGGAGC 58.919 45.833 2.25 0.00 39.03 4.70
397 398 6.045695 AGTCCAGATTGGTATACTAGGAGCTA 59.954 42.308 2.25 0.00 39.03 3.32
398 399 6.151480 GTCCAGATTGGTATACTAGGAGCTAC 59.849 46.154 2.25 0.00 39.03 3.58
399 400 5.419471 CCAGATTGGTATACTAGGAGCTACC 59.581 48.000 2.25 0.00 35.28 3.18
400 401 5.124138 CAGATTGGTATACTAGGAGCTACCG 59.876 48.000 2.25 0.00 44.74 4.02
401 402 4.712051 TTGGTATACTAGGAGCTACCGA 57.288 45.455 2.25 0.00 44.74 4.69
402 403 4.283363 TGGTATACTAGGAGCTACCGAG 57.717 50.000 2.25 1.48 45.03 4.63
407 408 0.382515 CTAGGAGCTACCGAGTGTGC 59.617 60.000 0.00 0.00 44.74 4.57
408 409 0.034380 TAGGAGCTACCGAGTGTGCT 60.034 55.000 0.00 0.00 44.74 4.40
409 410 0.034380 AGGAGCTACCGAGTGTGCTA 60.034 55.000 0.00 0.00 44.74 3.49
410 411 0.100861 GGAGCTACCGAGTGTGCTAC 59.899 60.000 0.00 0.00 33.40 3.58
439 440 1.466024 CGTGTTCGGTAGCTCTCTCAC 60.466 57.143 0.00 0.00 0.00 3.51
440 441 1.813786 GTGTTCGGTAGCTCTCTCACT 59.186 52.381 0.00 0.00 0.00 3.41
441 442 2.229302 GTGTTCGGTAGCTCTCTCACTT 59.771 50.000 0.00 0.00 0.00 3.16
442 443 2.488545 TGTTCGGTAGCTCTCTCACTTC 59.511 50.000 0.00 0.00 0.00 3.01
443 444 2.750712 GTTCGGTAGCTCTCTCACTTCT 59.249 50.000 0.00 0.00 0.00 2.85
444 445 3.074675 TCGGTAGCTCTCTCACTTCTT 57.925 47.619 0.00 0.00 0.00 2.52
445 446 3.422796 TCGGTAGCTCTCTCACTTCTTT 58.577 45.455 0.00 0.00 0.00 2.52
446 447 3.191581 TCGGTAGCTCTCTCACTTCTTTG 59.808 47.826 0.00 0.00 0.00 2.77
448 449 4.321304 CGGTAGCTCTCTCACTTCTTTGAA 60.321 45.833 0.00 0.00 0.00 2.69
449 450 5.542779 GGTAGCTCTCTCACTTCTTTGAAA 58.457 41.667 0.00 0.00 0.00 2.69
450 451 6.169800 GGTAGCTCTCTCACTTCTTTGAAAT 58.830 40.000 0.00 0.00 0.00 2.17
451 452 6.312672 GGTAGCTCTCTCACTTCTTTGAAATC 59.687 42.308 0.00 0.00 0.00 2.17
453 454 5.012975 AGCTCTCTCACTTCTTTGAAATCCT 59.987 40.000 0.00 0.00 0.00 3.24
454 455 5.351189 GCTCTCTCACTTCTTTGAAATCCTC 59.649 44.000 0.00 0.00 0.00 3.71
455 456 6.678568 TCTCTCACTTCTTTGAAATCCTCT 57.321 37.500 0.00 0.00 0.00 3.69
456 457 7.578571 GCTCTCTCACTTCTTTGAAATCCTCTA 60.579 40.741 0.00 0.00 0.00 2.43
457 458 8.195165 TCTCTCACTTCTTTGAAATCCTCTAA 57.805 34.615 0.00 0.00 0.00 2.10
459 460 9.097257 CTCTCACTTCTTTGAAATCCTCTAATC 57.903 37.037 0.00 0.00 0.00 1.75
460 461 8.043710 TCTCACTTCTTTGAAATCCTCTAATCC 58.956 37.037 0.00 0.00 0.00 3.01
461 462 7.689299 TCACTTCTTTGAAATCCTCTAATCCA 58.311 34.615 0.00 0.00 0.00 3.41
462 463 7.826252 TCACTTCTTTGAAATCCTCTAATCCAG 59.174 37.037 0.00 0.00 0.00 3.86
463 464 7.826252 CACTTCTTTGAAATCCTCTAATCCAGA 59.174 37.037 0.00 0.00 0.00 3.86
464 465 7.826744 ACTTCTTTGAAATCCTCTAATCCAGAC 59.173 37.037 0.00 0.00 0.00 3.51
467 468 5.521906 TGAAATCCTCTAATCCAGACTCG 57.478 43.478 0.00 0.00 0.00 4.18
468 469 4.342378 TGAAATCCTCTAATCCAGACTCGG 59.658 45.833 0.00 0.00 0.00 4.63
469 470 3.885976 ATCCTCTAATCCAGACTCGGA 57.114 47.619 0.00 0.00 40.07 4.55
476 477 0.755686 ATCCAGACTCGGATTCCAGC 59.244 55.000 3.09 0.00 43.58 4.85
477 478 1.144936 CCAGACTCGGATTCCAGCC 59.855 63.158 3.09 0.00 0.00 4.85
487 488 1.366854 GATTCCAGCCGAACGGTTCC 61.367 60.000 14.83 2.41 37.65 3.62
488 489 2.119484 ATTCCAGCCGAACGGTTCCA 62.119 55.000 14.83 0.00 37.65 3.53
489 490 2.999739 TTCCAGCCGAACGGTTCCAC 63.000 60.000 14.83 7.39 37.65 4.02
490 491 2.030562 CAGCCGAACGGTTCCACT 59.969 61.111 14.83 9.48 37.65 4.00
491 492 2.027625 CAGCCGAACGGTTCCACTC 61.028 63.158 14.83 2.45 37.65 3.51
492 493 2.207924 AGCCGAACGGTTCCACTCT 61.208 57.895 14.83 4.54 37.65 3.24
495 496 0.949105 CCGAACGGTTCCACTCTTGG 60.949 60.000 14.83 4.99 45.56 3.61
496 497 0.249741 CGAACGGTTCCACTCTTGGT 60.250 55.000 14.83 0.00 44.35 3.67
497 498 1.808891 CGAACGGTTCCACTCTTGGTT 60.809 52.381 14.83 0.00 44.35 3.67
499 500 3.671716 GAACGGTTCCACTCTTGGTTAT 58.328 45.455 9.75 0.00 44.35 1.89
501 502 3.408634 ACGGTTCCACTCTTGGTTATTG 58.591 45.455 0.00 0.00 44.35 1.90
502 503 2.747446 CGGTTCCACTCTTGGTTATTGG 59.253 50.000 0.00 0.00 44.35 3.16
503 504 3.558321 CGGTTCCACTCTTGGTTATTGGA 60.558 47.826 0.00 0.00 44.35 3.53
504 505 3.756963 GGTTCCACTCTTGGTTATTGGAC 59.243 47.826 0.00 0.00 44.35 4.02
505 506 3.713826 TCCACTCTTGGTTATTGGACC 57.286 47.619 0.00 0.00 44.35 4.46
512 513 2.507407 TGGTTATTGGACCAAGGAGC 57.493 50.000 13.43 12.87 46.33 4.70
513 514 1.992557 TGGTTATTGGACCAAGGAGCT 59.007 47.619 13.43 0.00 46.33 4.09
514 515 2.290896 TGGTTATTGGACCAAGGAGCTG 60.291 50.000 13.43 0.00 46.33 4.24
515 516 2.369394 GTTATTGGACCAAGGAGCTGG 58.631 52.381 13.43 0.00 42.68 4.85
516 517 0.255890 TATTGGACCAAGGAGCTGGC 59.744 55.000 13.43 0.00 40.45 4.85
519 520 2.125350 GACCAAGGAGCTGGCTCG 60.125 66.667 15.15 5.32 43.59 5.03
521 522 2.172483 GACCAAGGAGCTGGCTCGAA 62.172 60.000 15.15 0.00 43.59 3.71
522 523 1.743252 CCAAGGAGCTGGCTCGAAC 60.743 63.158 15.15 3.37 43.59 3.95
523 524 1.743252 CAAGGAGCTGGCTCGAACC 60.743 63.158 15.15 0.00 43.59 3.62
524 525 3.302347 AAGGAGCTGGCTCGAACCG 62.302 63.158 15.15 0.00 43.59 4.44
525 526 4.821589 GGAGCTGGCTCGAACCGG 62.822 72.222 9.45 9.45 43.59 5.28
554 624 6.509418 TTGATTATTTGCCACCAGTTACTC 57.491 37.500 0.00 0.00 0.00 2.59
585 655 5.953183 TGACATTTTGCCACTCATTACATC 58.047 37.500 0.00 0.00 0.00 3.06
610 680 6.293626 CGAAATTGATCTGGTGACACTTCTTT 60.294 38.462 5.39 0.00 35.60 2.52
623 693 7.224557 GGTGACACTTCTTTGTTTGCATTTTAT 59.775 33.333 5.39 0.00 0.00 1.40
729 799 0.394216 ACCTGTTTGACTGCACAGCA 60.394 50.000 0.00 0.00 39.36 4.41
761 831 1.142097 GGACGAACCCTAGCTGCTC 59.858 63.158 4.91 0.00 0.00 4.26
762 832 1.226717 GACGAACCCTAGCTGCTCG 60.227 63.158 4.91 5.19 35.68 5.03
764 834 1.517257 CGAACCCTAGCTGCTCGTG 60.517 63.158 4.91 0.00 0.00 4.35
765 835 1.811679 GAACCCTAGCTGCTCGTGC 60.812 63.158 4.91 1.71 40.20 5.34
766 836 2.232298 GAACCCTAGCTGCTCGTGCT 62.232 60.000 4.91 5.72 43.79 4.40
767 837 2.202851 CCCTAGCTGCTCGTGCTG 60.203 66.667 4.91 11.33 41.32 4.41
867 963 4.577246 CGCAGCGACTAGGGAGCC 62.577 72.222 9.98 0.00 0.00 4.70
871 967 2.913060 GCGACTAGGGAGCCGGAT 60.913 66.667 5.05 0.00 0.00 4.18
979 8285 0.541863 CCCCCTGCTATTCAGTTCGT 59.458 55.000 0.00 0.00 41.25 3.85
984 8290 3.182967 CCTGCTATTCAGTTCGTCAGTC 58.817 50.000 0.00 0.00 41.25 3.51
1012 8318 3.207669 GCCCCATGCTGCTCTTCG 61.208 66.667 0.00 0.00 36.87 3.79
1086 9296 1.691976 AGTGCTGTACTGCTGTTGGTA 59.308 47.619 23.07 0.83 38.49 3.25
1094 9304 1.140852 ACTGCTGTTGGTACTGCTCAA 59.859 47.619 8.30 0.00 46.06 3.02
1099 9309 3.321497 CTGTTGGTACTGCTCAAGTCTC 58.679 50.000 0.00 0.00 40.56 3.36
1107 9317 1.803519 GCTCAAGTCTCGTGCCTCG 60.804 63.158 0.00 0.00 41.41 4.63
1110 9320 4.421479 AAGTCTCGTGCCTCGGCG 62.421 66.667 0.00 0.00 45.51 6.46
1202 10315 2.020131 CGGGAGCAATCACTGATGC 58.980 57.895 0.00 0.00 0.00 3.91
1220 10333 5.345702 TGATGCGTATTAGCGTAGAAAAGT 58.654 37.500 0.00 0.00 40.67 2.66
1221 10334 5.457799 TGATGCGTATTAGCGTAGAAAAGTC 59.542 40.000 0.00 0.00 40.67 3.01
1248 10362 5.402568 TCGTTTGCTATCATAGAAGAATCGC 59.597 40.000 0.00 0.00 0.00 4.58
1249 10363 5.403766 CGTTTGCTATCATAGAAGAATCGCT 59.596 40.000 0.00 0.00 0.00 4.93
1250 10364 6.588552 GTTTGCTATCATAGAAGAATCGCTG 58.411 40.000 0.00 0.00 0.00 5.18
1299 10413 6.057533 CCCATGAAATAATCAGTGTAGCAGA 58.942 40.000 0.00 0.00 42.53 4.26
1304 11330 7.559486 TGAAATAATCAGTGTAGCAGAGACAT 58.441 34.615 0.00 0.00 33.04 3.06
1350 11376 2.813474 CGTGCTCGGCCAATCGAA 60.813 61.111 2.24 0.00 38.77 3.71
1361 11387 1.994916 CCAATCGAAAACATGGGCAC 58.005 50.000 0.00 0.00 0.00 5.01
1376 11402 2.088423 GGGCACATTCGGTATTTCACA 58.912 47.619 0.00 0.00 0.00 3.58
1435 11461 9.995003 AGAAGTGGCAAAATATCAATTACAAAA 57.005 25.926 0.00 0.00 0.00 2.44
1508 11534 2.668850 TCCCCCTTCTGAAATCCTCT 57.331 50.000 0.00 0.00 0.00 3.69
1530 11556 0.324738 TCCAGACTCGGATTCCAGCT 60.325 55.000 3.09 0.00 0.00 4.24
1702 11733 0.806492 GATTGACCGTTCCCTCGAGC 60.806 60.000 6.99 0.00 0.00 5.03
1740 11771 1.988846 CAACTCCTCTTTCCCCTTCCT 59.011 52.381 0.00 0.00 0.00 3.36
1880 11914 0.034863 GACCGTCTCCTCTGTCCTCT 60.035 60.000 0.00 0.00 0.00 3.69
1948 11982 1.080354 TCCCCGACAAGTCATCCCT 59.920 57.895 0.72 0.00 0.00 4.20
2019 12053 1.918800 CCTCCCCGACCACCTCTTT 60.919 63.158 0.00 0.00 0.00 2.52
2055 12089 3.435186 GCCCTCTTTGCTGTCCGC 61.435 66.667 0.00 0.00 39.77 5.54
2114 12148 3.117491 TGCTCTGCTGCTATATGTTCC 57.883 47.619 0.00 0.00 0.00 3.62
2151 12186 4.931661 AATGCTTTGCTGCTATATGCTT 57.068 36.364 0.00 0.00 43.37 3.91
2163 12198 6.673154 TGCTATATGCTTTGCTGCTATATG 57.327 37.500 0.00 0.00 43.37 1.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.428999 GCTAACCTGACATCTCTGCGTAA 60.429 47.826 0.00 0.00 0.00 3.18
1 2 2.099263 GCTAACCTGACATCTCTGCGTA 59.901 50.000 0.00 0.00 0.00 4.42
2 3 1.134965 GCTAACCTGACATCTCTGCGT 60.135 52.381 0.00 0.00 0.00 5.24
4 5 2.167281 TCAGCTAACCTGACATCTCTGC 59.833 50.000 0.00 0.00 45.44 4.26
15 16 3.306472 TGTTTGGGTTTCAGCTAACCT 57.694 42.857 16.26 0.00 45.58 3.50
17 18 5.006153 ACTTTGTTTGGGTTTCAGCTAAC 57.994 39.130 0.00 0.00 0.00 2.34
18 19 5.669164 AACTTTGTTTGGGTTTCAGCTAA 57.331 34.783 0.00 0.00 0.00 3.09
19 20 6.153000 TGTTAACTTTGTTTGGGTTTCAGCTA 59.847 34.615 7.22 0.00 0.00 3.32
20 21 5.046950 TGTTAACTTTGTTTGGGTTTCAGCT 60.047 36.000 7.22 0.00 0.00 4.24
21 22 5.062934 GTGTTAACTTTGTTTGGGTTTCAGC 59.937 40.000 7.22 0.00 0.00 4.26
22 23 5.287513 CGTGTTAACTTTGTTTGGGTTTCAG 59.712 40.000 7.22 0.00 0.00 3.02
23 24 5.162075 CGTGTTAACTTTGTTTGGGTTTCA 58.838 37.500 7.22 0.00 0.00 2.69
24 25 4.563580 CCGTGTTAACTTTGTTTGGGTTTC 59.436 41.667 7.22 0.00 0.00 2.78
25 26 4.021280 ACCGTGTTAACTTTGTTTGGGTTT 60.021 37.500 7.22 0.00 0.00 3.27
26 27 3.510753 ACCGTGTTAACTTTGTTTGGGTT 59.489 39.130 7.22 0.00 0.00 4.11
28 29 3.128938 TCACCGTGTTAACTTTGTTTGGG 59.871 43.478 7.22 0.00 0.00 4.12
29 30 4.358494 TCACCGTGTTAACTTTGTTTGG 57.642 40.909 7.22 1.22 0.00 3.28
30 31 4.737765 CCATCACCGTGTTAACTTTGTTTG 59.262 41.667 7.22 0.00 0.00 2.93
31 32 4.399934 ACCATCACCGTGTTAACTTTGTTT 59.600 37.500 7.22 0.00 0.00 2.83
32 33 3.949113 ACCATCACCGTGTTAACTTTGTT 59.051 39.130 7.22 0.00 0.00 2.83
33 34 3.547746 ACCATCACCGTGTTAACTTTGT 58.452 40.909 7.22 0.00 0.00 2.83
35 36 3.562557 GTGACCATCACCGTGTTAACTTT 59.437 43.478 7.22 0.00 41.37 2.66
36 37 3.135994 GTGACCATCACCGTGTTAACTT 58.864 45.455 7.22 0.00 41.37 2.66
37 38 2.103432 TGTGACCATCACCGTGTTAACT 59.897 45.455 7.22 0.00 46.40 2.24
39 40 2.912690 TGTGACCATCACCGTGTTAA 57.087 45.000 6.51 0.00 46.40 2.01
40 41 2.549134 CCTTGTGACCATCACCGTGTTA 60.549 50.000 6.51 0.00 46.40 2.41
41 42 1.593196 CTTGTGACCATCACCGTGTT 58.407 50.000 6.51 0.00 46.40 3.32
42 43 0.250295 CCTTGTGACCATCACCGTGT 60.250 55.000 6.51 0.00 46.40 4.49
43 44 1.577328 GCCTTGTGACCATCACCGTG 61.577 60.000 6.51 0.00 46.40 4.94
44 45 1.302511 GCCTTGTGACCATCACCGT 60.303 57.895 6.51 0.00 46.40 4.83
45 46 0.249120 TAGCCTTGTGACCATCACCG 59.751 55.000 6.51 0.00 46.40 4.94
46 47 1.279271 AGTAGCCTTGTGACCATCACC 59.721 52.381 6.51 0.00 46.40 4.02
48 49 3.708451 TCTAGTAGCCTTGTGACCATCA 58.292 45.455 0.00 0.00 0.00 3.07
49 50 4.946478 ATCTAGTAGCCTTGTGACCATC 57.054 45.455 0.00 0.00 0.00 3.51
50 51 5.700402 AAATCTAGTAGCCTTGTGACCAT 57.300 39.130 0.00 0.00 0.00 3.55
51 52 5.499004 AAAATCTAGTAGCCTTGTGACCA 57.501 39.130 0.00 0.00 0.00 4.02
74 75 8.626526 AGTTCAGATTTTAAGGCGTTTAGAAAA 58.373 29.630 0.00 0.00 0.00 2.29
75 76 8.073768 CAGTTCAGATTTTAAGGCGTTTAGAAA 58.926 33.333 0.00 0.00 0.00 2.52
78 79 7.129109 TCAGTTCAGATTTTAAGGCGTTTAG 57.871 36.000 0.00 0.00 0.00 1.85
79 80 7.227910 AGTTCAGTTCAGATTTTAAGGCGTTTA 59.772 33.333 0.00 0.00 0.00 2.01
80 81 6.039382 AGTTCAGTTCAGATTTTAAGGCGTTT 59.961 34.615 0.00 0.00 0.00 3.60
81 82 5.531287 AGTTCAGTTCAGATTTTAAGGCGTT 59.469 36.000 0.00 0.00 0.00 4.84
82 83 5.063880 AGTTCAGTTCAGATTTTAAGGCGT 58.936 37.500 0.00 0.00 0.00 5.68
83 84 5.409826 AGAGTTCAGTTCAGATTTTAAGGCG 59.590 40.000 0.00 0.00 0.00 5.52
84 85 6.809630 AGAGTTCAGTTCAGATTTTAAGGC 57.190 37.500 0.00 0.00 0.00 4.35
122 123 9.952030 TGTCCAAACTGTAATATTTAGATGACA 57.048 29.630 0.00 4.39 0.00 3.58
124 125 9.613428 CCTGTCCAAACTGTAATATTTAGATGA 57.387 33.333 0.00 0.00 0.00 2.92
125 126 9.613428 TCCTGTCCAAACTGTAATATTTAGATG 57.387 33.333 0.00 0.00 0.00 2.90
126 127 9.614792 GTCCTGTCCAAACTGTAATATTTAGAT 57.385 33.333 0.00 0.00 0.00 1.98
128 129 8.786826 TGTCCTGTCCAAACTGTAATATTTAG 57.213 34.615 0.00 0.00 0.00 1.85
129 130 9.747898 ATTGTCCTGTCCAAACTGTAATATTTA 57.252 29.630 0.00 0.00 0.00 1.40
130 131 8.522830 CATTGTCCTGTCCAAACTGTAATATTT 58.477 33.333 0.00 0.00 0.00 1.40
132 133 6.603201 CCATTGTCCTGTCCAAACTGTAATAT 59.397 38.462 0.00 0.00 0.00 1.28
134 135 4.766891 CCATTGTCCTGTCCAAACTGTAAT 59.233 41.667 0.00 0.00 0.00 1.89
135 136 4.141287 CCATTGTCCTGTCCAAACTGTAA 58.859 43.478 0.00 0.00 0.00 2.41
141 142 1.496857 TCCACCATTGTCCTGTCCAAA 59.503 47.619 0.00 0.00 0.00 3.28
142 143 1.144691 TCCACCATTGTCCTGTCCAA 58.855 50.000 0.00 0.00 0.00 3.53
143 144 1.144691 TTCCACCATTGTCCTGTCCA 58.855 50.000 0.00 0.00 0.00 4.02
144 145 1.073923 AGTTCCACCATTGTCCTGTCC 59.926 52.381 0.00 0.00 0.00 4.02
145 146 2.568623 AGTTCCACCATTGTCCTGTC 57.431 50.000 0.00 0.00 0.00 3.51
146 147 2.958355 CAAAGTTCCACCATTGTCCTGT 59.042 45.455 0.00 0.00 0.00 4.00
148 149 3.490348 CTCAAAGTTCCACCATTGTCCT 58.510 45.455 0.00 0.00 0.00 3.85
149 150 2.029918 GCTCAAAGTTCCACCATTGTCC 60.030 50.000 0.00 0.00 0.00 4.02
150 151 2.350772 CGCTCAAAGTTCCACCATTGTC 60.351 50.000 0.00 0.00 0.00 3.18
151 152 1.608590 CGCTCAAAGTTCCACCATTGT 59.391 47.619 0.00 0.00 0.00 2.71
152 153 1.879380 TCGCTCAAAGTTCCACCATTG 59.121 47.619 0.00 0.00 0.00 2.82
153 154 2.270352 TCGCTCAAAGTTCCACCATT 57.730 45.000 0.00 0.00 0.00 3.16
154 155 1.880027 GTTCGCTCAAAGTTCCACCAT 59.120 47.619 0.00 0.00 0.00 3.55
155 156 1.305201 GTTCGCTCAAAGTTCCACCA 58.695 50.000 0.00 0.00 0.00 4.17
157 158 3.626028 AATGTTCGCTCAAAGTTCCAC 57.374 42.857 0.00 0.00 0.00 4.02
158 159 4.647424 AAAATGTTCGCTCAAAGTTCCA 57.353 36.364 0.00 0.00 0.00 3.53
195 196 8.482128 GCCTCCAAAATATATAGTGATAGCTCT 58.518 37.037 0.00 0.00 0.00 4.09
196 197 8.260818 TGCCTCCAAAATATATAGTGATAGCTC 58.739 37.037 0.00 0.00 0.00 4.09
197 198 8.150827 TGCCTCCAAAATATATAGTGATAGCT 57.849 34.615 0.00 0.00 0.00 3.32
198 199 8.792830 TTGCCTCCAAAATATATAGTGATAGC 57.207 34.615 0.00 0.00 0.00 2.97
200 201 9.231297 GCTTTGCCTCCAAAATATATAGTGATA 57.769 33.333 0.00 0.00 40.21 2.15
201 202 7.946776 AGCTTTGCCTCCAAAATATATAGTGAT 59.053 33.333 0.00 0.00 40.21 3.06
204 205 9.454859 GATAGCTTTGCCTCCAAAATATATAGT 57.545 33.333 0.00 0.00 40.21 2.12
205 206 8.897752 GGATAGCTTTGCCTCCAAAATATATAG 58.102 37.037 0.00 0.00 40.21 1.31
206 207 7.834181 GGGATAGCTTTGCCTCCAAAATATATA 59.166 37.037 7.47 0.00 40.21 0.86
208 209 6.010219 GGGATAGCTTTGCCTCCAAAATATA 58.990 40.000 7.47 0.00 40.21 0.86
209 210 4.835056 GGGATAGCTTTGCCTCCAAAATAT 59.165 41.667 7.47 0.00 40.21 1.28
210 211 4.079212 AGGGATAGCTTTGCCTCCAAAATA 60.079 41.667 11.48 0.00 40.21 1.40
211 212 3.033909 GGGATAGCTTTGCCTCCAAAAT 58.966 45.455 7.47 0.00 40.21 1.82
212 213 2.042979 AGGGATAGCTTTGCCTCCAAAA 59.957 45.455 11.48 0.00 40.21 2.44
213 214 1.640670 AGGGATAGCTTTGCCTCCAAA 59.359 47.619 11.48 0.00 38.56 3.28
214 215 1.064463 CAGGGATAGCTTTGCCTCCAA 60.064 52.381 14.28 0.00 34.84 3.53
215 216 0.548031 CAGGGATAGCTTTGCCTCCA 59.452 55.000 14.28 0.00 34.84 3.86
216 217 0.548510 ACAGGGATAGCTTTGCCTCC 59.451 55.000 14.28 2.75 34.84 4.30
217 218 2.485657 GGTACAGGGATAGCTTTGCCTC 60.486 54.545 14.28 4.02 34.84 4.70
218 219 1.490910 GGTACAGGGATAGCTTTGCCT 59.509 52.381 11.48 11.48 38.07 4.75
219 220 1.211949 TGGTACAGGGATAGCTTTGCC 59.788 52.381 6.60 6.60 0.00 4.52
220 221 2.710096 TGGTACAGGGATAGCTTTGC 57.290 50.000 0.00 0.00 0.00 3.68
231 232 1.625818 AGTTGCTCTCCTTGGTACAGG 59.374 52.381 0.00 0.00 42.39 4.00
232 233 3.070018 CAAGTTGCTCTCCTTGGTACAG 58.930 50.000 0.00 0.00 42.39 2.74
233 234 2.703536 TCAAGTTGCTCTCCTTGGTACA 59.296 45.455 0.00 0.00 38.83 2.90
234 235 3.402628 TCAAGTTGCTCTCCTTGGTAC 57.597 47.619 0.00 0.00 38.83 3.34
235 236 4.640771 ATTCAAGTTGCTCTCCTTGGTA 57.359 40.909 0.00 0.00 38.83 3.25
236 237 3.515602 ATTCAAGTTGCTCTCCTTGGT 57.484 42.857 0.00 0.00 38.83 3.67
237 238 5.248640 TCTTATTCAAGTTGCTCTCCTTGG 58.751 41.667 0.00 0.00 38.83 3.61
238 239 6.205464 TGTTCTTATTCAAGTTGCTCTCCTTG 59.795 38.462 0.00 0.00 39.50 3.61
240 241 5.703130 GTGTTCTTATTCAAGTTGCTCTCCT 59.297 40.000 0.00 0.00 33.20 3.69
241 242 5.106515 GGTGTTCTTATTCAAGTTGCTCTCC 60.107 44.000 0.00 0.00 33.20 3.71
242 243 5.703130 AGGTGTTCTTATTCAAGTTGCTCTC 59.297 40.000 0.00 0.00 33.20 3.20
244 245 5.948992 AGGTGTTCTTATTCAAGTTGCTC 57.051 39.130 0.00 0.00 33.20 4.26
245 246 9.167311 CTTATAGGTGTTCTTATTCAAGTTGCT 57.833 33.333 0.00 0.00 33.20 3.91
249 250 9.740710 AAAGCTTATAGGTGTTCTTATTCAAGT 57.259 29.630 0.00 0.00 33.20 3.16
260 261 9.780186 GGATTCAGTATAAAGCTTATAGGTGTT 57.220 33.333 0.00 0.00 0.00 3.32
261 262 8.376270 GGGATTCAGTATAAAGCTTATAGGTGT 58.624 37.037 0.00 0.00 0.00 4.16
262 263 8.598041 AGGGATTCAGTATAAAGCTTATAGGTG 58.402 37.037 0.00 0.00 0.00 4.00
263 264 8.598041 CAGGGATTCAGTATAAAGCTTATAGGT 58.402 37.037 0.00 0.00 0.00 3.08
264 265 8.816894 TCAGGGATTCAGTATAAAGCTTATAGG 58.183 37.037 0.00 0.00 0.00 2.57
278 279 8.727149 TCCTCATAAAAATATCAGGGATTCAGT 58.273 33.333 0.00 0.00 0.00 3.41
279 280 9.578576 TTCCTCATAAAAATATCAGGGATTCAG 57.421 33.333 0.00 0.00 0.00 3.02
280 281 9.578576 CTTCCTCATAAAAATATCAGGGATTCA 57.421 33.333 0.00 0.00 0.00 2.57
281 282 9.799106 TCTTCCTCATAAAAATATCAGGGATTC 57.201 33.333 0.00 0.00 0.00 2.52
282 283 9.579932 GTCTTCCTCATAAAAATATCAGGGATT 57.420 33.333 0.00 0.00 0.00 3.01
283 284 8.953665 AGTCTTCCTCATAAAAATATCAGGGAT 58.046 33.333 0.00 0.00 0.00 3.85
284 285 8.213679 CAGTCTTCCTCATAAAAATATCAGGGA 58.786 37.037 0.00 0.00 0.00 4.20
285 286 8.213679 TCAGTCTTCCTCATAAAAATATCAGGG 58.786 37.037 0.00 0.00 0.00 4.45
286 287 9.618890 TTCAGTCTTCCTCATAAAAATATCAGG 57.381 33.333 0.00 0.00 0.00 3.86
290 291 9.579932 GGGATTCAGTCTTCCTCATAAAAATAT 57.420 33.333 0.00 0.00 32.34 1.28
291 292 8.781951 AGGGATTCAGTCTTCCTCATAAAAATA 58.218 33.333 0.00 0.00 32.34 1.40
293 294 6.886459 CAGGGATTCAGTCTTCCTCATAAAAA 59.114 38.462 0.00 0.00 32.34 1.94
295 296 5.726308 TCAGGGATTCAGTCTTCCTCATAAA 59.274 40.000 0.00 0.00 32.34 1.40
296 297 5.280499 TCAGGGATTCAGTCTTCCTCATAA 58.720 41.667 0.00 0.00 32.34 1.90
298 299 3.729108 TCAGGGATTCAGTCTTCCTCAT 58.271 45.455 0.00 0.00 32.34 2.90
301 302 4.290722 ACAAATCAGGGATTCAGTCTTCCT 59.709 41.667 0.00 0.00 30.29 3.36
302 303 4.593956 ACAAATCAGGGATTCAGTCTTCC 58.406 43.478 0.00 0.00 30.29 3.46
303 304 5.707298 TCAACAAATCAGGGATTCAGTCTTC 59.293 40.000 0.00 0.00 30.29 2.87
304 305 5.634118 TCAACAAATCAGGGATTCAGTCTT 58.366 37.500 0.00 0.00 30.29 3.01
307 308 5.835280 AGTTTCAACAAATCAGGGATTCAGT 59.165 36.000 0.00 0.00 30.29 3.41
308 309 6.336842 AGTTTCAACAAATCAGGGATTCAG 57.663 37.500 0.00 0.00 30.29 3.02
310 311 6.208599 TGGTAGTTTCAACAAATCAGGGATTC 59.791 38.462 0.00 0.00 30.29 2.52
313 314 5.055265 TGGTAGTTTCAACAAATCAGGGA 57.945 39.130 0.00 0.00 0.00 4.20
314 315 5.534654 TCTTGGTAGTTTCAACAAATCAGGG 59.465 40.000 0.00 0.00 0.00 4.45
315 316 6.039270 TGTCTTGGTAGTTTCAACAAATCAGG 59.961 38.462 0.00 0.00 0.00 3.86
316 317 6.912591 GTGTCTTGGTAGTTTCAACAAATCAG 59.087 38.462 0.00 0.00 0.00 2.90
317 318 6.601613 AGTGTCTTGGTAGTTTCAACAAATCA 59.398 34.615 0.00 0.00 0.00 2.57
318 319 7.027778 AGTGTCTTGGTAGTTTCAACAAATC 57.972 36.000 0.00 0.00 0.00 2.17
319 320 7.773690 ACTAGTGTCTTGGTAGTTTCAACAAAT 59.226 33.333 0.00 0.00 0.00 2.32
320 321 7.107542 ACTAGTGTCTTGGTAGTTTCAACAAA 58.892 34.615 0.00 0.00 0.00 2.83
323 324 6.759827 TGAACTAGTGTCTTGGTAGTTTCAAC 59.240 38.462 0.00 0.00 37.17 3.18
324 325 6.880484 TGAACTAGTGTCTTGGTAGTTTCAA 58.120 36.000 0.00 0.00 37.17 2.69
326 327 6.746120 TCTGAACTAGTGTCTTGGTAGTTTC 58.254 40.000 0.00 0.00 37.17 2.78
327 328 6.726490 TCTGAACTAGTGTCTTGGTAGTTT 57.274 37.500 0.00 0.00 37.17 2.66
328 329 6.726490 TTCTGAACTAGTGTCTTGGTAGTT 57.274 37.500 0.00 0.00 39.23 2.24
329 330 6.919775 ATTCTGAACTAGTGTCTTGGTAGT 57.080 37.500 0.00 0.00 0.00 2.73
330 331 6.814146 GGAATTCTGAACTAGTGTCTTGGTAG 59.186 42.308 5.23 0.00 0.00 3.18
331 332 6.497259 AGGAATTCTGAACTAGTGTCTTGGTA 59.503 38.462 5.23 0.00 0.00 3.25
332 333 5.308237 AGGAATTCTGAACTAGTGTCTTGGT 59.692 40.000 5.23 0.00 0.00 3.67
334 335 7.607250 AGTAGGAATTCTGAACTAGTGTCTTG 58.393 38.462 5.23 0.00 0.00 3.02
335 336 7.784470 AGTAGGAATTCTGAACTAGTGTCTT 57.216 36.000 5.23 0.00 0.00 3.01
340 341 9.292195 GCTATCTAGTAGGAATTCTGAACTAGT 57.708 37.037 25.00 19.27 40.23 2.57
341 342 9.515226 AGCTATCTAGTAGGAATTCTGAACTAG 57.485 37.037 22.71 22.71 40.53 2.57
342 343 9.290988 CAGCTATCTAGTAGGAATTCTGAACTA 57.709 37.037 5.23 9.48 0.00 2.24
343 344 7.255801 GCAGCTATCTAGTAGGAATTCTGAACT 60.256 40.741 5.23 8.87 0.00 3.01
344 345 6.866248 GCAGCTATCTAGTAGGAATTCTGAAC 59.134 42.308 5.23 1.68 0.00 3.18
345 346 6.551227 TGCAGCTATCTAGTAGGAATTCTGAA 59.449 38.462 5.23 0.00 0.00 3.02
346 347 6.071320 TGCAGCTATCTAGTAGGAATTCTGA 58.929 40.000 5.23 0.00 0.00 3.27
348 349 7.893302 ACTATGCAGCTATCTAGTAGGAATTCT 59.107 37.037 5.23 0.00 0.00 2.40
349 350 8.062065 ACTATGCAGCTATCTAGTAGGAATTC 57.938 38.462 0.00 0.00 0.00 2.17
350 351 7.123547 GGACTATGCAGCTATCTAGTAGGAATT 59.876 40.741 0.00 0.00 0.00 2.17
351 352 6.605594 GGACTATGCAGCTATCTAGTAGGAAT 59.394 42.308 0.00 0.00 0.00 3.01
353 354 5.014228 TGGACTATGCAGCTATCTAGTAGGA 59.986 44.000 0.00 0.00 0.00 2.94
355 356 6.176896 TCTGGACTATGCAGCTATCTAGTAG 58.823 44.000 0.00 0.00 35.65 2.57
357 358 4.991776 TCTGGACTATGCAGCTATCTAGT 58.008 43.478 0.00 0.00 35.65 2.57
359 360 5.186603 CCAATCTGGACTATGCAGCTATCTA 59.813 44.000 0.00 0.00 40.96 1.98
360 361 4.020396 CCAATCTGGACTATGCAGCTATCT 60.020 45.833 0.00 0.00 40.96 1.98
362 363 3.649981 ACCAATCTGGACTATGCAGCTAT 59.350 43.478 0.00 0.00 40.96 2.97
364 365 1.842562 ACCAATCTGGACTATGCAGCT 59.157 47.619 0.00 0.00 40.96 4.24
367 368 6.437477 CCTAGTATACCAATCTGGACTATGCA 59.563 42.308 0.00 0.00 40.96 3.96
368 369 6.663953 TCCTAGTATACCAATCTGGACTATGC 59.336 42.308 0.00 0.00 40.96 3.14
369 370 7.147983 GCTCCTAGTATACCAATCTGGACTATG 60.148 44.444 0.00 0.00 40.96 2.23
370 371 6.893005 GCTCCTAGTATACCAATCTGGACTAT 59.107 42.308 0.00 0.00 40.96 2.12
372 373 5.081032 GCTCCTAGTATACCAATCTGGACT 58.919 45.833 0.00 0.00 40.96 3.85
373 374 5.081032 AGCTCCTAGTATACCAATCTGGAC 58.919 45.833 0.00 0.00 40.96 4.02
374 375 5.340891 AGCTCCTAGTATACCAATCTGGA 57.659 43.478 0.00 0.00 40.96 3.86
376 377 5.124138 CGGTAGCTCCTAGTATACCAATCTG 59.876 48.000 0.00 0.00 38.04 2.90
379 380 5.222089 ACTCGGTAGCTCCTAGTATACCAAT 60.222 44.000 0.00 0.00 39.92 3.16
380 381 4.103785 ACTCGGTAGCTCCTAGTATACCAA 59.896 45.833 0.00 0.00 39.92 3.67
381 382 3.649981 ACTCGGTAGCTCCTAGTATACCA 59.350 47.826 0.00 0.00 39.92 3.25
382 383 4.002316 CACTCGGTAGCTCCTAGTATACC 58.998 52.174 0.00 0.00 39.74 2.73
383 384 4.451774 CACACTCGGTAGCTCCTAGTATAC 59.548 50.000 8.40 0.00 39.74 1.47
384 385 4.639334 CACACTCGGTAGCTCCTAGTATA 58.361 47.826 8.40 0.00 39.74 1.47
385 386 3.478509 CACACTCGGTAGCTCCTAGTAT 58.521 50.000 8.40 0.00 39.74 2.12
386 387 2.915349 CACACTCGGTAGCTCCTAGTA 58.085 52.381 8.40 0.00 39.74 1.82
388 389 0.382515 GCACACTCGGTAGCTCCTAG 59.617 60.000 0.00 0.00 35.43 3.02
392 393 1.064357 GAGTAGCACACTCGGTAGCTC 59.936 57.143 0.00 0.00 44.19 4.09
401 402 0.818296 CGCCCTAAGAGTAGCACACT 59.182 55.000 0.00 0.00 41.47 3.55
402 403 0.531200 ACGCCCTAAGAGTAGCACAC 59.469 55.000 0.00 0.00 0.00 3.82
403 404 0.530744 CACGCCCTAAGAGTAGCACA 59.469 55.000 0.00 0.00 0.00 4.57
405 406 1.203994 GAACACGCCCTAAGAGTAGCA 59.796 52.381 0.00 0.00 0.00 3.49
406 407 1.798079 CGAACACGCCCTAAGAGTAGC 60.798 57.143 0.00 0.00 0.00 3.58
407 408 1.202268 CCGAACACGCCCTAAGAGTAG 60.202 57.143 0.00 0.00 0.00 2.57
408 409 0.813184 CCGAACACGCCCTAAGAGTA 59.187 55.000 0.00 0.00 0.00 2.59
409 410 1.183676 ACCGAACACGCCCTAAGAGT 61.184 55.000 0.00 0.00 0.00 3.24
410 411 0.813184 TACCGAACACGCCCTAAGAG 59.187 55.000 0.00 0.00 0.00 2.85
439 440 8.046107 AGTCTGGATTAGAGGATTTCAAAGAAG 58.954 37.037 0.00 0.00 35.70 2.85
440 441 7.922382 AGTCTGGATTAGAGGATTTCAAAGAA 58.078 34.615 0.00 0.00 35.70 2.52
441 442 7.502060 AGTCTGGATTAGAGGATTTCAAAGA 57.498 36.000 0.00 0.00 35.70 2.52
442 443 6.478344 CGAGTCTGGATTAGAGGATTTCAAAG 59.522 42.308 0.00 0.00 35.70 2.77
443 444 6.341316 CGAGTCTGGATTAGAGGATTTCAAA 58.659 40.000 0.00 0.00 35.70 2.69
444 445 5.163405 CCGAGTCTGGATTAGAGGATTTCAA 60.163 44.000 0.00 0.00 35.70 2.69
445 446 4.342378 CCGAGTCTGGATTAGAGGATTTCA 59.658 45.833 0.00 0.00 35.70 2.69
446 447 4.585162 TCCGAGTCTGGATTAGAGGATTTC 59.415 45.833 0.31 0.00 35.70 2.17
448 449 4.186077 TCCGAGTCTGGATTAGAGGATT 57.814 45.455 0.31 0.00 35.70 3.01
449 450 3.885976 TCCGAGTCTGGATTAGAGGAT 57.114 47.619 0.31 0.00 35.70 3.24
450 451 3.885976 ATCCGAGTCTGGATTAGAGGA 57.114 47.619 9.78 0.00 46.74 3.71
459 460 1.144936 GGCTGGAATCCGAGTCTGG 59.855 63.158 0.00 0.00 0.00 3.86
460 461 4.844420 GGCTGGAATCCGAGTCTG 57.156 61.111 0.00 0.00 0.00 3.51
467 468 1.366854 GAACCGTTCGGCTGGAATCC 61.367 60.000 11.32 0.00 36.92 3.01
468 469 1.366854 GGAACCGTTCGGCTGGAATC 61.367 60.000 11.32 1.18 36.92 2.52
469 470 1.376812 GGAACCGTTCGGCTGGAAT 60.377 57.895 11.32 0.00 36.92 3.01
471 472 3.235481 TGGAACCGTTCGGCTGGA 61.235 61.111 11.32 0.00 0.00 3.86
472 473 3.047877 GTGGAACCGTTCGGCTGG 61.048 66.667 11.32 0.00 0.00 4.85
473 474 2.027625 GAGTGGAACCGTTCGGCTG 61.028 63.158 11.32 0.00 37.80 4.85
474 475 1.755393 AAGAGTGGAACCGTTCGGCT 61.755 55.000 11.32 5.68 37.80 5.52
475 476 1.301479 AAGAGTGGAACCGTTCGGC 60.301 57.895 11.32 1.04 37.80 5.54
476 477 2.528797 CAAGAGTGGAACCGTTCGG 58.471 57.895 9.81 9.81 37.80 4.30
495 496 2.369394 CCAGCTCCTTGGTCCAATAAC 58.631 52.381 4.34 0.00 33.38 1.89
496 497 1.340991 GCCAGCTCCTTGGTCCAATAA 60.341 52.381 4.34 0.00 40.49 1.40
497 498 0.255890 GCCAGCTCCTTGGTCCAATA 59.744 55.000 4.34 0.00 40.49 1.90
499 500 2.129555 GAGCCAGCTCCTTGGTCCAA 62.130 60.000 8.51 3.76 40.49 3.53
501 502 2.270527 GAGCCAGCTCCTTGGTCC 59.729 66.667 8.51 0.00 40.49 4.46
502 503 2.125350 CGAGCCAGCTCCTTGGTC 60.125 66.667 13.83 0.00 40.49 4.02
503 504 2.217038 TTCGAGCCAGCTCCTTGGT 61.217 57.895 13.83 0.00 40.49 3.67
504 505 1.743252 GTTCGAGCCAGCTCCTTGG 60.743 63.158 13.83 0.28 39.77 3.61
505 506 1.743252 GGTTCGAGCCAGCTCCTTG 60.743 63.158 14.14 0.64 39.77 3.61
506 507 2.665603 GGTTCGAGCCAGCTCCTT 59.334 61.111 14.14 0.00 39.77 3.36
507 508 3.764466 CGGTTCGAGCCAGCTCCT 61.764 66.667 19.03 0.00 39.77 3.69
515 516 1.154035 CAAATTGGCCGGTTCGAGC 60.154 57.895 1.90 0.00 0.00 5.03
516 517 1.094785 ATCAAATTGGCCGGTTCGAG 58.905 50.000 1.90 0.00 0.00 4.04
519 520 4.033932 GCAAATAATCAAATTGGCCGGTTC 59.966 41.667 1.90 0.00 30.74 3.62
521 522 3.530535 GCAAATAATCAAATTGGCCGGT 58.469 40.909 1.90 0.00 30.74 5.28
522 523 2.871633 GGCAAATAATCAAATTGGCCGG 59.128 45.455 0.00 0.00 44.15 6.13
525 526 4.260170 TGGTGGCAAATAATCAAATTGGC 58.740 39.130 4.56 4.56 46.34 4.52
526 527 5.490159 ACTGGTGGCAAATAATCAAATTGG 58.510 37.500 0.00 0.00 0.00 3.16
527 528 7.818930 AGTAACTGGTGGCAAATAATCAAATTG 59.181 33.333 0.00 0.00 0.00 2.32
528 529 7.906327 AGTAACTGGTGGCAAATAATCAAATT 58.094 30.769 0.00 0.00 0.00 1.82
554 624 3.068590 AGTGGCAAAATGTCAAAGTCCAG 59.931 43.478 0.00 0.00 31.67 3.86
585 655 4.692625 AGAAGTGTCACCAGATCAATTTCG 59.307 41.667 0.00 0.00 0.00 3.46
630 700 6.934083 AGATTGTTTTTGTGTTGAAAAGTGGT 59.066 30.769 0.00 0.00 0.00 4.16
672 742 4.574828 GTCCTCTGTTTTGTGCACTTCTTA 59.425 41.667 19.41 1.01 0.00 2.10
675 745 2.682856 TGTCCTCTGTTTTGTGCACTTC 59.317 45.455 19.41 6.32 0.00 3.01
746 816 1.517257 CACGAGCAGCTAGGGTTCG 60.517 63.158 7.51 7.15 0.00 3.95
811 907 2.300152 CAGGTCCTCTCTACAACTGCAA 59.700 50.000 0.00 0.00 0.00 4.08
815 911 1.896465 GCACAGGTCCTCTCTACAACT 59.104 52.381 0.00 0.00 0.00 3.16
816 912 1.402984 CGCACAGGTCCTCTCTACAAC 60.403 57.143 0.00 0.00 0.00 3.32
817 913 0.888619 CGCACAGGTCCTCTCTACAA 59.111 55.000 0.00 0.00 0.00 2.41
818 914 0.965866 CCGCACAGGTCCTCTCTACA 60.966 60.000 0.00 0.00 34.51 2.74
819 915 1.810532 CCGCACAGGTCCTCTCTAC 59.189 63.158 0.00 0.00 34.51 2.59
820 916 4.338815 CCGCACAGGTCCTCTCTA 57.661 61.111 0.00 0.00 34.51 2.43
857 953 2.203509 CCGATCCGGCTCCCTAGT 60.204 66.667 0.00 0.00 41.17 2.57
970 8276 1.202486 GGGTGTGACTGACGAACTGAA 60.202 52.381 0.00 0.00 0.00 3.02
979 8285 4.314440 GCAGGCGGGTGTGACTGA 62.314 66.667 0.00 0.00 32.86 3.41
1012 8318 2.277756 CACTAGTACGCGGGCGAC 60.278 66.667 20.98 12.92 42.83 5.19
1064 9274 2.069273 CCAACAGCAGTACAGCACTAC 58.931 52.381 13.16 0.00 34.98 2.73
1065 9275 1.691976 ACCAACAGCAGTACAGCACTA 59.308 47.619 13.16 0.00 34.98 2.74
1066 9276 0.469917 ACCAACAGCAGTACAGCACT 59.530 50.000 13.16 0.00 38.32 4.40
1067 9277 1.798813 GTACCAACAGCAGTACAGCAC 59.201 52.381 13.16 0.00 38.94 4.40
1068 9278 1.691976 AGTACCAACAGCAGTACAGCA 59.308 47.619 13.16 0.00 41.07 4.41
1069 9279 2.069273 CAGTACCAACAGCAGTACAGC 58.931 52.381 1.29 1.29 41.07 4.40
1070 9280 2.069273 GCAGTACCAACAGCAGTACAG 58.931 52.381 0.00 0.00 41.07 2.74
1071 9281 1.691976 AGCAGTACCAACAGCAGTACA 59.308 47.619 0.00 0.00 40.38 2.90
1072 9282 2.288825 TGAGCAGTACCAACAGCAGTAC 60.289 50.000 0.00 0.00 40.38 2.73
1075 9285 1.802960 CTTGAGCAGTACCAACAGCAG 59.197 52.381 0.00 0.00 40.38 4.24
1086 9296 1.005630 GGCACGAGACTTGAGCAGT 60.006 57.895 13.34 0.00 39.07 4.40
1120 9330 1.068264 CAGAGCACAAGAGTCTACGCA 60.068 52.381 10.08 0.00 0.00 5.24
1202 10315 4.929781 AGGGACTTTTCTACGCTAATACG 58.070 43.478 0.00 0.00 27.25 3.06
1220 10333 4.893524 TCTTCTATGATAGCAAACGAGGGA 59.106 41.667 0.00 0.00 0.00 4.20
1221 10334 5.201713 TCTTCTATGATAGCAAACGAGGG 57.798 43.478 0.00 0.00 0.00 4.30
1248 10362 3.592070 AGCATGCAAGCAGCTCAG 58.408 55.556 21.98 0.00 45.94 3.35
1292 10406 4.424626 TCGTTCATTCATGTCTCTGCTAC 58.575 43.478 0.00 0.00 0.00 3.58
1299 10413 4.271696 TCCTGTTCGTTCATTCATGTCT 57.728 40.909 0.00 0.00 0.00 3.41
1304 11330 3.067106 GCTCTTCCTGTTCGTTCATTCA 58.933 45.455 0.00 0.00 0.00 2.57
1350 11376 2.208132 TACCGAATGTGCCCATGTTT 57.792 45.000 0.00 0.00 0.00 2.83
1361 11387 2.687425 TGCCCATGTGAAATACCGAATG 59.313 45.455 0.00 0.00 0.00 2.67
1376 11402 0.688749 GAGGATTTGCCCTTGCCCAT 60.689 55.000 0.00 0.00 36.49 4.00
1430 11456 6.160576 ACAATTTGCCACTGTCTATTTTGT 57.839 33.333 0.00 0.00 0.00 2.83
1435 11461 5.536161 ACTTTGACAATTTGCCACTGTCTAT 59.464 36.000 0.00 0.00 40.14 1.98
1562 11588 2.817396 GCAGGTTCGAGCCAGCTC 60.817 66.667 25.07 9.67 37.93 4.09
1673 11699 3.250744 GAACGGTCAATCGATCACTTGA 58.749 45.455 0.00 0.00 33.19 3.02
1702 11733 1.961277 GTGCGTCTGGTGGAGTTGG 60.961 63.158 0.00 0.00 0.00 3.77
1948 11982 3.282745 GAAGACGGCGAGCAGGACA 62.283 63.158 16.62 0.00 0.00 4.02
2019 12053 2.418628 GGCATCACCTTCGAAAAATCGA 59.581 45.455 0.00 0.00 40.66 3.59
2055 12089 0.833287 CATGTACAGGGAGAGGTGGG 59.167 60.000 0.33 0.00 0.00 4.61
2151 12186 7.105588 TCTCTTTTCTGAACATATAGCAGCAA 58.894 34.615 0.00 0.00 0.00 3.91
2163 12198 9.424319 TGTAACATCTACATCTCTTTTCTGAAC 57.576 33.333 0.00 0.00 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.