Multiple sequence alignment - TraesCS4A01G115600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G115600 chr4A 100.000 2408 0 0 1 2408 140756870 140754463 0.000000e+00 4447
1 TraesCS4A01G115600 chr4D 90.240 1291 51 31 410 1643 329310600 329311872 0.000000e+00 1616
2 TraesCS4A01G115600 chr4D 91.000 400 21 5 2005 2403 329316232 329316617 2.120000e-145 525
3 TraesCS4A01G115600 chr4D 91.860 172 9 3 1840 2009 329314631 329314799 4.000000e-58 235
4 TraesCS4A01G115600 chr4D 84.507 142 9 7 1 142 329310452 329310580 6.990000e-26 128
5 TraesCS4A01G115600 chr4B 89.989 939 56 16 807 1716 409339174 409340103 0.000000e+00 1179
6 TraesCS4A01G115600 chr4B 90.078 383 22 7 2018 2400 409342863 409343229 1.290000e-132 483
7 TraesCS4A01G115600 chr4B 91.549 284 19 3 1719 2000 409341398 409341678 1.040000e-103 387
8 TraesCS4A01G115600 chr4B 85.922 206 11 10 614 811 409333861 409334056 1.130000e-48 204
9 TraesCS4A01G115600 chr2A 84.450 373 39 14 863 1224 45096205 45095841 1.370000e-92 350
10 TraesCS4A01G115600 chr2A 83.641 379 40 11 863 1224 45085760 45085387 1.070000e-88 337
11 TraesCS4A01G115600 chr2D 83.967 368 47 7 863 1224 43300847 43300486 2.290000e-90 342
12 TraesCS4A01G115600 chr2D 83.198 369 48 9 863 1224 43295234 43294873 2.310000e-85 326
13 TraesCS4A01G115600 chr5D 88.278 273 31 1 141 413 76233628 76233357 2.310000e-85 326
14 TraesCS4A01G115600 chr5D 87.591 274 31 3 140 413 461875399 461875129 5.000000e-82 315
15 TraesCS4A01G115600 chr5D 87.500 272 32 2 142 413 438188021 438188290 1.800000e-81 313
16 TraesCS4A01G115600 chr7A 88.148 270 28 4 145 413 517891583 517891317 3.860000e-83 318
17 TraesCS4A01G115600 chr7B 87.636 275 30 4 140 413 510398879 510398608 1.390000e-82 316
18 TraesCS4A01G115600 chr7D 87.319 276 33 2 137 411 98404435 98404161 5.000000e-82 315
19 TraesCS4A01G115600 chr7D 87.778 270 31 2 144 413 565188933 565189200 5.000000e-82 315
20 TraesCS4A01G115600 chr6B 87.778 270 32 1 143 412 536107846 536107578 5.000000e-82 315
21 TraesCS4A01G115600 chr5B 87.823 271 29 4 143 413 656078494 656078760 5.000000e-82 315
22 TraesCS4A01G115600 chr2B 82.540 378 46 12 863 1224 68207122 68206749 5.000000e-82 315
23 TraesCS4A01G115600 chr2B 82.005 389 40 17 863 1224 68201729 68201344 1.080000e-78 303
24 TraesCS4A01G115600 chr1A 84.375 160 23 2 863 1021 133999360 133999518 3.210000e-34 156


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G115600 chr4A 140754463 140756870 2407 True 4447 4447 100.000000 1 2408 1 chr4A.!!$R1 2407
1 TraesCS4A01G115600 chr4D 329310452 329316617 6165 False 626 1616 89.401750 1 2403 4 chr4D.!!$F1 2402
2 TraesCS4A01G115600 chr4B 409339174 409343229 4055 False 683 1179 90.538667 807 2400 3 chr4B.!!$F2 1593

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
767 807 0.036022 ACCTCTCCTTCAAGCAGTGC 59.964 55.0 7.13 7.13 0.0 4.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2322 6433 0.179207 CATGCTGTCACGCACATCAC 60.179 55.0 0.0 0.0 43.61 3.06 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 1.351017 ACGAGCCCATCTCCTTTCAAA 59.649 47.619 0.00 0.00 38.62 2.69
32 33 2.162408 CGAGCCCATCTCCTTTCAAAAC 59.838 50.000 0.00 0.00 38.62 2.43
33 34 3.425659 GAGCCCATCTCCTTTCAAAACT 58.574 45.455 0.00 0.00 35.77 2.66
48 49 4.407818 TCAAAACTGTTTGCGTTGTACTG 58.592 39.130 6.53 0.00 43.30 2.74
49 50 4.083217 TCAAAACTGTTTGCGTTGTACTGT 60.083 37.500 6.53 0.00 43.30 3.55
50 51 5.121925 TCAAAACTGTTTGCGTTGTACTGTA 59.878 36.000 6.53 0.00 43.30 2.74
52 53 3.788937 ACTGTTTGCGTTGTACTGTACT 58.211 40.909 17.98 0.00 0.00 2.73
53 54 3.554324 ACTGTTTGCGTTGTACTGTACTG 59.446 43.478 17.98 9.57 0.00 2.74
54 55 3.523547 TGTTTGCGTTGTACTGTACTGT 58.476 40.909 17.98 10.46 0.00 3.55
55 56 4.680702 TGTTTGCGTTGTACTGTACTGTA 58.319 39.130 17.98 8.40 0.00 2.74
56 57 4.503734 TGTTTGCGTTGTACTGTACTGTAC 59.496 41.667 27.19 27.19 42.10 2.90
57 58 4.572985 TTGCGTTGTACTGTACTGTACT 57.427 40.909 30.96 5.78 42.22 2.73
58 59 5.687770 TTGCGTTGTACTGTACTGTACTA 57.312 39.130 30.96 24.95 42.22 1.82
59 60 5.034554 TGCGTTGTACTGTACTGTACTAC 57.965 43.478 29.82 29.82 42.22 2.73
60 61 4.756642 TGCGTTGTACTGTACTGTACTACT 59.243 41.667 32.75 8.90 42.53 2.57
61 62 5.931724 TGCGTTGTACTGTACTGTACTACTA 59.068 40.000 32.75 25.20 42.53 1.82
62 63 6.128553 TGCGTTGTACTGTACTGTACTACTAC 60.129 42.308 32.75 27.87 42.53 2.73
63 64 6.091441 GCGTTGTACTGTACTGTACTACTACT 59.909 42.308 32.75 7.25 42.53 2.57
64 65 7.670916 CGTTGTACTGTACTGTACTACTACTC 58.329 42.308 32.75 19.42 42.53 2.59
65 66 7.462069 CGTTGTACTGTACTGTACTACTACTCG 60.462 44.444 32.75 23.92 42.53 4.18
92 93 1.065926 TGGCATCACATGTCTCTCCAC 60.066 52.381 0.00 0.00 35.48 4.02
126 127 1.715585 CCCGCAGATTGTTACGCAG 59.284 57.895 0.00 0.00 0.00 5.18
129 130 0.247419 CGCAGATTGTTACGCAGCAG 60.247 55.000 0.00 0.00 0.00 4.24
133 134 0.179189 GATTGTTACGCAGCAGTGGC 60.179 55.000 0.00 0.00 41.61 5.01
146 147 3.436700 GCAGTGGCTGTTGTACTTTTT 57.563 42.857 0.00 0.00 36.96 1.94
181 182 2.632377 GATGAAATCCGGTCTTCTGCA 58.368 47.619 15.93 0.00 37.38 4.41
182 183 1.808411 TGAAATCCGGTCTTCTGCAC 58.192 50.000 15.93 0.00 0.00 4.57
183 184 1.087501 GAAATCCGGTCTTCTGCACC 58.912 55.000 0.00 0.00 0.00 5.01
184 185 0.693049 AAATCCGGTCTTCTGCACCT 59.307 50.000 0.00 0.00 0.00 4.00
185 186 1.568504 AATCCGGTCTTCTGCACCTA 58.431 50.000 0.00 0.00 0.00 3.08
186 187 1.115467 ATCCGGTCTTCTGCACCTAG 58.885 55.000 0.00 0.00 0.00 3.02
187 188 0.039180 TCCGGTCTTCTGCACCTAGA 59.961 55.000 0.00 0.00 0.00 2.43
188 189 0.173708 CCGGTCTTCTGCACCTAGAC 59.826 60.000 0.00 8.80 38.02 2.59
189 190 0.179161 CGGTCTTCTGCACCTAGACG 60.179 60.000 10.38 0.00 39.30 4.18
190 191 1.174783 GGTCTTCTGCACCTAGACGA 58.825 55.000 10.38 0.00 39.30 4.20
191 192 1.751924 GGTCTTCTGCACCTAGACGAT 59.248 52.381 10.38 0.00 39.30 3.73
192 193 2.480416 GGTCTTCTGCACCTAGACGATG 60.480 54.545 10.38 0.00 39.30 3.84
193 194 1.135139 TCTTCTGCACCTAGACGATGC 59.865 52.381 0.00 0.00 39.88 3.91
194 195 0.894835 TTCTGCACCTAGACGATGCA 59.105 50.000 9.57 9.57 46.73 3.96
197 198 2.509052 TGCACCTAGACGATGCATAC 57.491 50.000 0.00 0.00 44.17 2.39
198 199 1.269051 TGCACCTAGACGATGCATACG 60.269 52.381 0.00 8.10 44.17 3.06
199 200 1.001706 GCACCTAGACGATGCATACGA 60.002 52.381 20.36 3.85 39.23 3.43
200 201 2.351835 GCACCTAGACGATGCATACGAT 60.352 50.000 20.36 12.74 39.23 3.73
201 202 3.857383 GCACCTAGACGATGCATACGATT 60.857 47.826 20.36 12.21 39.23 3.34
202 203 4.615223 GCACCTAGACGATGCATACGATTA 60.615 45.833 20.36 12.55 39.23 1.75
203 204 4.852104 CACCTAGACGATGCATACGATTAC 59.148 45.833 20.36 11.01 34.70 1.89
204 205 4.760715 ACCTAGACGATGCATACGATTACT 59.239 41.667 20.36 15.42 34.70 2.24
205 206 5.241064 ACCTAGACGATGCATACGATTACTT 59.759 40.000 20.36 2.38 34.70 2.24
206 207 6.150318 CCTAGACGATGCATACGATTACTTT 58.850 40.000 20.36 1.80 34.70 2.66
207 208 7.040892 ACCTAGACGATGCATACGATTACTTTA 60.041 37.037 20.36 2.64 34.70 1.85
208 209 7.968956 CCTAGACGATGCATACGATTACTTTAT 59.031 37.037 20.36 0.64 34.70 1.40
209 210 9.343103 CTAGACGATGCATACGATTACTTTATT 57.657 33.333 20.36 0.06 34.70 1.40
211 212 9.687210 AGACGATGCATACGATTACTTTATTAA 57.313 29.630 20.36 0.00 34.70 1.40
237 238 9.646427 ATTATTCTCACAAGACTCTACAAAGTC 57.354 33.333 0.00 0.00 44.96 3.01
238 239 6.465439 TTCTCACAAGACTCTACAAAGTCA 57.535 37.500 6.79 0.00 46.65 3.41
239 240 6.656632 TCTCACAAGACTCTACAAAGTCAT 57.343 37.500 6.79 0.00 46.65 3.06
240 241 7.761038 TCTCACAAGACTCTACAAAGTCATA 57.239 36.000 6.79 0.00 46.65 2.15
241 242 7.594714 TCTCACAAGACTCTACAAAGTCATAC 58.405 38.462 6.79 0.00 46.65 2.39
242 243 7.230712 TCTCACAAGACTCTACAAAGTCATACA 59.769 37.037 6.79 0.00 46.65 2.29
243 244 7.722363 TCACAAGACTCTACAAAGTCATACAA 58.278 34.615 6.79 0.00 46.65 2.41
244 245 7.652105 TCACAAGACTCTACAAAGTCATACAAC 59.348 37.037 6.79 0.00 46.65 3.32
245 246 7.438160 CACAAGACTCTACAAAGTCATACAACA 59.562 37.037 6.79 0.00 46.65 3.33
246 247 7.653713 ACAAGACTCTACAAAGTCATACAACAG 59.346 37.037 6.79 0.00 46.65 3.16
247 248 7.291411 AGACTCTACAAAGTCATACAACAGT 57.709 36.000 6.79 0.00 46.65 3.55
248 249 8.405418 AGACTCTACAAAGTCATACAACAGTA 57.595 34.615 6.79 0.00 46.65 2.74
249 250 8.857098 AGACTCTACAAAGTCATACAACAGTAA 58.143 33.333 6.79 0.00 46.65 2.24
250 251 9.472361 GACTCTACAAAGTCATACAACAGTAAA 57.528 33.333 0.00 0.00 44.20 2.01
251 252 9.477484 ACTCTACAAAGTCATACAACAGTAAAG 57.523 33.333 0.00 0.00 0.00 1.85
252 253 8.306680 TCTACAAAGTCATACAACAGTAAAGC 57.693 34.615 0.00 0.00 0.00 3.51
253 254 8.148351 TCTACAAAGTCATACAACAGTAAAGCT 58.852 33.333 0.00 0.00 0.00 3.74
254 255 9.419297 CTACAAAGTCATACAACAGTAAAGCTA 57.581 33.333 0.00 0.00 0.00 3.32
255 256 8.671384 ACAAAGTCATACAACAGTAAAGCTAA 57.329 30.769 0.00 0.00 0.00 3.09
256 257 9.116067 ACAAAGTCATACAACAGTAAAGCTAAA 57.884 29.630 0.00 0.00 0.00 1.85
257 258 9.944663 CAAAGTCATACAACAGTAAAGCTAAAA 57.055 29.630 0.00 0.00 0.00 1.52
266 267 9.216117 ACAACAGTAAAGCTAAAAATATCGTCT 57.784 29.630 0.00 0.00 0.00 4.18
282 283 5.763444 ATCGTCTAATCAACAAACTGTCG 57.237 39.130 0.00 0.00 0.00 4.35
283 284 3.427528 TCGTCTAATCAACAAACTGTCGC 59.572 43.478 0.00 0.00 0.00 5.19
284 285 3.428870 CGTCTAATCAACAAACTGTCGCT 59.571 43.478 0.00 0.00 0.00 4.93
285 286 4.619760 CGTCTAATCAACAAACTGTCGCTA 59.380 41.667 0.00 0.00 0.00 4.26
286 287 5.442909 CGTCTAATCAACAAACTGTCGCTAC 60.443 44.000 0.00 0.00 0.00 3.58
287 288 5.404366 GTCTAATCAACAAACTGTCGCTACA 59.596 40.000 0.00 0.00 0.00 2.74
288 289 6.090898 GTCTAATCAACAAACTGTCGCTACAT 59.909 38.462 0.00 0.00 34.37 2.29
289 290 4.928661 ATCAACAAACTGTCGCTACATC 57.071 40.909 0.00 0.00 34.37 3.06
290 291 3.990092 TCAACAAACTGTCGCTACATCT 58.010 40.909 0.00 0.00 34.37 2.90
291 292 5.128992 TCAACAAACTGTCGCTACATCTA 57.871 39.130 0.00 0.00 34.37 1.98
292 293 5.720202 TCAACAAACTGTCGCTACATCTAT 58.280 37.500 0.00 0.00 34.37 1.98
293 294 5.805486 TCAACAAACTGTCGCTACATCTATC 59.195 40.000 0.00 0.00 34.37 2.08
294 295 4.683832 ACAAACTGTCGCTACATCTATCC 58.316 43.478 0.00 0.00 34.37 2.59
295 296 4.159693 ACAAACTGTCGCTACATCTATCCA 59.840 41.667 0.00 0.00 34.37 3.41
296 297 4.576216 AACTGTCGCTACATCTATCCAG 57.424 45.455 0.00 0.00 34.37 3.86
297 298 3.556999 ACTGTCGCTACATCTATCCAGT 58.443 45.455 0.00 0.00 34.37 4.00
298 299 3.954904 ACTGTCGCTACATCTATCCAGTT 59.045 43.478 0.00 0.00 34.37 3.16
299 300 4.202060 ACTGTCGCTACATCTATCCAGTTG 60.202 45.833 0.00 0.00 34.37 3.16
300 301 3.951680 TGTCGCTACATCTATCCAGTTGA 59.048 43.478 0.00 0.00 0.00 3.18
301 302 4.584743 TGTCGCTACATCTATCCAGTTGAT 59.415 41.667 0.00 0.00 37.49 2.57
302 303 4.920340 GTCGCTACATCTATCCAGTTGATG 59.080 45.833 0.00 0.00 43.11 3.07
303 304 4.827284 TCGCTACATCTATCCAGTTGATGA 59.173 41.667 8.86 0.00 40.94 2.92
304 305 5.301805 TCGCTACATCTATCCAGTTGATGAA 59.698 40.000 8.86 0.00 40.94 2.57
305 306 5.632764 CGCTACATCTATCCAGTTGATGAAG 59.367 44.000 8.86 0.00 40.94 3.02
306 307 5.931146 GCTACATCTATCCAGTTGATGAAGG 59.069 44.000 8.86 0.00 40.94 3.46
307 308 5.301835 ACATCTATCCAGTTGATGAAGGG 57.698 43.478 8.86 0.00 40.94 3.95
308 309 4.971282 ACATCTATCCAGTTGATGAAGGGA 59.029 41.667 8.86 0.00 40.94 4.20
309 310 5.163258 ACATCTATCCAGTTGATGAAGGGAC 60.163 44.000 8.86 0.00 40.94 4.46
310 311 2.698855 ATCCAGTTGATGAAGGGACG 57.301 50.000 0.00 0.00 30.54 4.79
311 312 0.036388 TCCAGTTGATGAAGGGACGC 60.036 55.000 0.00 0.00 0.00 5.19
312 313 0.321564 CCAGTTGATGAAGGGACGCA 60.322 55.000 0.00 0.00 0.00 5.24
313 314 1.081892 CAGTTGATGAAGGGACGCAG 58.918 55.000 0.00 0.00 0.00 5.18
314 315 0.976641 AGTTGATGAAGGGACGCAGA 59.023 50.000 0.00 0.00 0.00 4.26
315 316 1.556911 AGTTGATGAAGGGACGCAGAT 59.443 47.619 0.00 0.00 0.00 2.90
316 317 2.766263 AGTTGATGAAGGGACGCAGATA 59.234 45.455 0.00 0.00 0.00 1.98
317 318 3.126831 GTTGATGAAGGGACGCAGATAG 58.873 50.000 0.00 0.00 0.00 2.08
318 319 1.069204 TGATGAAGGGACGCAGATAGC 59.931 52.381 0.00 0.00 40.87 2.97
319 320 0.394565 ATGAAGGGACGCAGATAGCC 59.605 55.000 0.00 0.00 41.38 3.93
320 321 0.687757 TGAAGGGACGCAGATAGCCT 60.688 55.000 0.00 0.00 41.38 4.58
321 322 0.249657 GAAGGGACGCAGATAGCCTG 60.250 60.000 0.00 0.00 45.67 4.85
322 323 1.690219 AAGGGACGCAGATAGCCTGG 61.690 60.000 0.00 0.00 43.13 4.45
326 327 3.554342 CGCAGATAGCCTGGGCCT 61.554 66.667 4.53 0.00 46.58 5.19
327 328 2.210013 CGCAGATAGCCTGGGCCTA 61.210 63.158 4.53 0.00 46.58 3.93
328 329 1.758440 CGCAGATAGCCTGGGCCTAA 61.758 60.000 4.53 0.00 46.58 2.69
329 330 0.695347 GCAGATAGCCTGGGCCTAAT 59.305 55.000 4.53 0.00 43.13 1.73
330 331 1.909302 GCAGATAGCCTGGGCCTAATA 59.091 52.381 4.53 0.00 43.13 0.98
331 332 2.355209 GCAGATAGCCTGGGCCTAATAC 60.355 54.545 4.53 0.00 43.13 1.89
332 333 2.237392 CAGATAGCCTGGGCCTAATACC 59.763 54.545 4.53 0.00 43.17 2.73
333 334 2.158004 AGATAGCCTGGGCCTAATACCA 60.158 50.000 4.53 0.00 43.17 3.25
334 335 2.199927 TAGCCTGGGCCTAATACCAA 57.800 50.000 4.53 0.00 43.17 3.67
335 336 1.304891 AGCCTGGGCCTAATACCAAA 58.695 50.000 4.53 0.00 43.17 3.28
336 337 1.063942 AGCCTGGGCCTAATACCAAAC 60.064 52.381 4.53 0.00 43.17 2.93
337 338 1.341581 GCCTGGGCCTAATACCAAACA 60.342 52.381 4.53 0.00 36.09 2.83
338 339 2.654863 CCTGGGCCTAATACCAAACAG 58.345 52.381 4.53 0.00 36.09 3.16
339 340 2.241176 CCTGGGCCTAATACCAAACAGA 59.759 50.000 4.53 0.00 36.09 3.41
340 341 3.279434 CTGGGCCTAATACCAAACAGAC 58.721 50.000 4.53 0.00 36.09 3.51
341 342 2.645297 TGGGCCTAATACCAAACAGACA 59.355 45.455 4.53 0.00 32.89 3.41
342 343 3.268334 TGGGCCTAATACCAAACAGACAT 59.732 43.478 4.53 0.00 32.89 3.06
343 344 3.883489 GGGCCTAATACCAAACAGACATC 59.117 47.826 0.84 0.00 0.00 3.06
344 345 3.560068 GGCCTAATACCAAACAGACATCG 59.440 47.826 0.00 0.00 0.00 3.84
345 346 3.002348 GCCTAATACCAAACAGACATCGC 59.998 47.826 0.00 0.00 0.00 4.58
346 347 4.188462 CCTAATACCAAACAGACATCGCA 58.812 43.478 0.00 0.00 0.00 5.10
347 348 4.634004 CCTAATACCAAACAGACATCGCAA 59.366 41.667 0.00 0.00 0.00 4.85
348 349 4.419522 AATACCAAACAGACATCGCAAC 57.580 40.909 0.00 0.00 0.00 4.17
349 350 0.951558 ACCAAACAGACATCGCAACC 59.048 50.000 0.00 0.00 0.00 3.77
350 351 0.950836 CCAAACAGACATCGCAACCA 59.049 50.000 0.00 0.00 0.00 3.67
351 352 1.336440 CCAAACAGACATCGCAACCAA 59.664 47.619 0.00 0.00 0.00 3.67
352 353 2.223688 CCAAACAGACATCGCAACCAAA 60.224 45.455 0.00 0.00 0.00 3.28
353 354 2.774439 AACAGACATCGCAACCAAAC 57.226 45.000 0.00 0.00 0.00 2.93
354 355 0.951558 ACAGACATCGCAACCAAACC 59.048 50.000 0.00 0.00 0.00 3.27
355 356 1.238439 CAGACATCGCAACCAAACCT 58.762 50.000 0.00 0.00 0.00 3.50
356 357 2.224426 ACAGACATCGCAACCAAACCTA 60.224 45.455 0.00 0.00 0.00 3.08
357 358 2.811431 CAGACATCGCAACCAAACCTAA 59.189 45.455 0.00 0.00 0.00 2.69
358 359 2.812011 AGACATCGCAACCAAACCTAAC 59.188 45.455 0.00 0.00 0.00 2.34
359 360 2.550606 GACATCGCAACCAAACCTAACA 59.449 45.455 0.00 0.00 0.00 2.41
360 361 3.153919 ACATCGCAACCAAACCTAACAT 58.846 40.909 0.00 0.00 0.00 2.71
361 362 3.572255 ACATCGCAACCAAACCTAACATT 59.428 39.130 0.00 0.00 0.00 2.71
362 363 4.038642 ACATCGCAACCAAACCTAACATTT 59.961 37.500 0.00 0.00 0.00 2.32
363 364 5.241949 ACATCGCAACCAAACCTAACATTTA 59.758 36.000 0.00 0.00 0.00 1.40
364 365 5.769484 TCGCAACCAAACCTAACATTTAA 57.231 34.783 0.00 0.00 0.00 1.52
365 366 5.764131 TCGCAACCAAACCTAACATTTAAG 58.236 37.500 0.00 0.00 0.00 1.85
366 367 5.531659 TCGCAACCAAACCTAACATTTAAGA 59.468 36.000 0.00 0.00 0.00 2.10
367 368 5.627780 CGCAACCAAACCTAACATTTAAGAC 59.372 40.000 0.00 0.00 0.00 3.01
368 369 5.924254 GCAACCAAACCTAACATTTAAGACC 59.076 40.000 0.00 0.00 0.00 3.85
369 370 6.239204 GCAACCAAACCTAACATTTAAGACCT 60.239 38.462 0.00 0.00 0.00 3.85
370 371 7.040271 GCAACCAAACCTAACATTTAAGACCTA 60.040 37.037 0.00 0.00 0.00 3.08
371 372 8.852135 CAACCAAACCTAACATTTAAGACCTAA 58.148 33.333 0.00 0.00 0.00 2.69
372 373 8.631480 ACCAAACCTAACATTTAAGACCTAAG 57.369 34.615 0.00 0.00 0.00 2.18
373 374 8.442374 ACCAAACCTAACATTTAAGACCTAAGA 58.558 33.333 0.00 0.00 0.00 2.10
374 375 8.727910 CCAAACCTAACATTTAAGACCTAAGAC 58.272 37.037 0.00 0.00 0.00 3.01
375 376 8.727910 CAAACCTAACATTTAAGACCTAAGACC 58.272 37.037 0.00 0.00 0.00 3.85
376 377 6.955364 ACCTAACATTTAAGACCTAAGACCC 58.045 40.000 0.00 0.00 0.00 4.46
377 378 6.069789 ACCTAACATTTAAGACCTAAGACCCC 60.070 42.308 0.00 0.00 0.00 4.95
378 379 5.853572 AACATTTAAGACCTAAGACCCCA 57.146 39.130 0.00 0.00 0.00 4.96
379 380 5.853572 ACATTTAAGACCTAAGACCCCAA 57.146 39.130 0.00 0.00 0.00 4.12
380 381 6.402981 ACATTTAAGACCTAAGACCCCAAT 57.597 37.500 0.00 0.00 0.00 3.16
381 382 6.800890 ACATTTAAGACCTAAGACCCCAATT 58.199 36.000 0.00 0.00 0.00 2.32
382 383 7.246027 ACATTTAAGACCTAAGACCCCAATTT 58.754 34.615 0.00 0.00 0.00 1.82
383 384 8.395605 ACATTTAAGACCTAAGACCCCAATTTA 58.604 33.333 0.00 0.00 0.00 1.40
384 385 8.903820 CATTTAAGACCTAAGACCCCAATTTAG 58.096 37.037 0.00 0.00 0.00 1.85
385 386 4.505324 AGACCTAAGACCCCAATTTAGC 57.495 45.455 0.00 0.00 0.00 3.09
386 387 3.202373 AGACCTAAGACCCCAATTTAGCC 59.798 47.826 0.00 0.00 0.00 3.93
387 388 2.923629 ACCTAAGACCCCAATTTAGCCA 59.076 45.455 0.00 0.00 0.00 4.75
388 389 3.288092 CCTAAGACCCCAATTTAGCCAC 58.712 50.000 0.00 0.00 0.00 5.01
389 390 3.053619 CCTAAGACCCCAATTTAGCCACT 60.054 47.826 0.00 0.00 0.00 4.00
390 391 3.542969 AAGACCCCAATTTAGCCACTT 57.457 42.857 0.00 0.00 0.00 3.16
391 392 2.807676 AGACCCCAATTTAGCCACTTG 58.192 47.619 0.00 0.00 0.00 3.16
392 393 1.204704 GACCCCAATTTAGCCACTTGC 59.795 52.381 0.00 0.00 41.71 4.01
393 394 0.536724 CCCCAATTTAGCCACTTGCC 59.463 55.000 0.00 0.00 42.71 4.52
394 395 0.173255 CCCAATTTAGCCACTTGCCG 59.827 55.000 0.00 0.00 42.71 5.69
395 396 0.173255 CCAATTTAGCCACTTGCCGG 59.827 55.000 0.00 0.00 42.71 6.13
396 397 0.173255 CAATTTAGCCACTTGCCGGG 59.827 55.000 2.18 0.00 42.71 5.73
397 398 0.251608 AATTTAGCCACTTGCCGGGT 60.252 50.000 2.18 0.00 42.71 5.28
398 399 0.679960 ATTTAGCCACTTGCCGGGTC 60.680 55.000 2.18 0.00 42.71 4.46
399 400 1.774894 TTTAGCCACTTGCCGGGTCT 61.775 55.000 2.18 0.00 42.71 3.85
400 401 2.463589 TTAGCCACTTGCCGGGTCTG 62.464 60.000 2.18 0.00 42.71 3.51
401 402 4.329545 GCCACTTGCCGGGTCTGA 62.330 66.667 2.18 0.00 0.00 3.27
402 403 2.429930 CCACTTGCCGGGTCTGAA 59.570 61.111 2.18 0.00 0.00 3.02
403 404 1.672356 CCACTTGCCGGGTCTGAAG 60.672 63.158 2.18 0.00 0.00 3.02
404 405 2.032681 ACTTGCCGGGTCTGAAGC 59.967 61.111 2.18 0.00 0.00 3.86
405 406 2.032528 CTTGCCGGGTCTGAAGCA 59.967 61.111 2.18 0.00 0.00 3.91
406 407 2.281484 TTGCCGGGTCTGAAGCAC 60.281 61.111 2.18 0.00 34.37 4.40
407 408 3.113514 TTGCCGGGTCTGAAGCACA 62.114 57.895 2.18 0.00 34.37 4.57
408 409 3.050275 GCCGGGTCTGAAGCACAC 61.050 66.667 2.18 0.00 0.00 3.82
439 440 1.890552 AGAGGTCTCATCCAATGGCT 58.109 50.000 0.00 0.00 0.00 4.75
440 441 2.203584 AGAGGTCTCATCCAATGGCTT 58.796 47.619 0.00 0.00 0.00 4.35
442 443 3.979347 AGAGGTCTCATCCAATGGCTTAT 59.021 43.478 0.00 0.00 0.00 1.73
443 444 4.070716 GAGGTCTCATCCAATGGCTTATG 58.929 47.826 0.00 0.00 0.00 1.90
444 445 3.152341 GGTCTCATCCAATGGCTTATGG 58.848 50.000 0.00 0.00 38.09 2.74
445 446 2.555757 GTCTCATCCAATGGCTTATGGC 59.444 50.000 0.00 0.00 36.62 4.40
446 447 2.444388 TCTCATCCAATGGCTTATGGCT 59.556 45.455 0.00 0.00 41.46 4.75
447 448 2.818432 CTCATCCAATGGCTTATGGCTC 59.182 50.000 0.00 0.00 41.46 4.70
448 449 2.175284 TCATCCAATGGCTTATGGCTCA 59.825 45.455 0.00 0.00 41.46 4.26
449 450 2.057137 TCCAATGGCTTATGGCTCAC 57.943 50.000 0.00 0.00 41.46 3.51
450 451 1.284491 TCCAATGGCTTATGGCTCACA 59.716 47.619 0.00 0.00 41.46 3.58
451 452 1.406539 CCAATGGCTTATGGCTCACAC 59.593 52.381 3.78 0.00 41.46 3.82
452 453 2.093890 CAATGGCTTATGGCTCACACA 58.906 47.619 3.78 0.00 41.46 3.72
453 454 1.755179 ATGGCTTATGGCTCACACAC 58.245 50.000 3.78 0.00 41.46 3.82
454 455 0.673333 TGGCTTATGGCTCACACACG 60.673 55.000 3.78 0.00 41.46 4.49
455 456 0.391130 GGCTTATGGCTCACACACGA 60.391 55.000 0.00 0.00 41.46 4.35
456 457 1.438651 GCTTATGGCTCACACACGAA 58.561 50.000 0.00 0.00 38.06 3.85
457 458 1.128692 GCTTATGGCTCACACACGAAC 59.871 52.381 0.00 0.00 38.06 3.95
458 459 2.688507 CTTATGGCTCACACACGAACT 58.311 47.619 0.00 0.00 0.00 3.01
467 468 0.372334 ACACACGAACTTTGACGCAC 59.628 50.000 0.00 0.00 0.00 5.34
483 484 2.357034 ACCTAGCGTTGCACCGTG 60.357 61.111 5.30 0.00 0.00 4.94
486 487 1.372997 CTAGCGTTGCACCGTGTCT 60.373 57.895 5.30 0.00 0.00 3.41
499 500 0.792640 CGTGTCTTGCACTAAGCTGG 59.207 55.000 0.00 0.00 45.57 4.85
500 501 1.160137 GTGTCTTGCACTAAGCTGGG 58.840 55.000 0.00 0.00 45.94 4.45
506 509 2.373335 TGCACTAAGCTGGGGAAAAA 57.627 45.000 0.00 0.00 45.94 1.94
524 527 3.839642 AACGCATGTTTGCCACCGC 62.840 57.895 0.00 0.00 46.57 5.68
530 533 0.037590 ATGTTTGCCACCGCTCCTAA 59.962 50.000 0.00 0.00 35.36 2.69
531 534 0.179015 TGTTTGCCACCGCTCCTAAA 60.179 50.000 0.00 0.00 35.36 1.85
533 536 0.109723 TTTGCCACCGCTCCTAAACT 59.890 50.000 0.00 0.00 35.36 2.66
559 569 3.233578 CCGACGACACAAATGAAAATGG 58.766 45.455 0.00 0.00 0.00 3.16
562 572 3.380142 ACGACACAAATGAAAATGGCAC 58.620 40.909 0.00 0.00 0.00 5.01
563 573 2.730928 CGACACAAATGAAAATGGCACC 59.269 45.455 0.00 0.00 0.00 5.01
566 576 5.138125 ACACAAATGAAAATGGCACCTAG 57.862 39.130 0.00 0.00 0.00 3.02
569 579 5.047802 CACAAATGAAAATGGCACCTAGAGT 60.048 40.000 0.00 0.00 0.00 3.24
570 580 6.150976 CACAAATGAAAATGGCACCTAGAGTA 59.849 38.462 0.00 0.00 0.00 2.59
593 612 2.335011 GCTTCAAAAACGCGCCCT 59.665 55.556 5.73 0.00 0.00 5.19
595 614 1.081442 CTTCAAAAACGCGCCCTCC 60.081 57.895 5.73 0.00 0.00 4.30
614 633 2.173669 CCAGGGATAAGCACGCACG 61.174 63.158 0.00 0.00 0.00 5.34
615 634 2.511600 AGGGATAAGCACGCACGC 60.512 61.111 0.00 0.00 0.00 5.34
616 635 3.925238 GGGATAAGCACGCACGCG 61.925 66.667 10.36 10.36 46.03 6.01
617 636 4.575245 GGATAAGCACGCACGCGC 62.575 66.667 12.02 0.00 44.19 6.86
687 722 0.673022 CAGTCTCCAGCAGCTCCAAC 60.673 60.000 0.00 0.00 0.00 3.77
710 745 2.615227 AATCCATCGCCTCCACCAGC 62.615 60.000 0.00 0.00 0.00 4.85
727 762 4.208686 CCTCCAGTACCGCGCTCC 62.209 72.222 5.56 0.00 0.00 4.70
765 805 0.605589 CGACCTCTCCTTCAAGCAGT 59.394 55.000 0.00 0.00 0.00 4.40
767 807 0.036022 ACCTCTCCTTCAAGCAGTGC 59.964 55.000 7.13 7.13 0.00 4.40
774 814 0.601046 CTTCAAGCAGTGCAGACCGA 60.601 55.000 19.20 2.87 0.00 4.69
1053 1105 1.738099 CGAGTTCAGGTTCTGCCCG 60.738 63.158 0.00 0.00 38.26 6.13
1263 1324 1.408969 CTAGCCACTCCTCCTCTTCC 58.591 60.000 0.00 0.00 0.00 3.46
1413 1474 2.271800 GTCCTCGCCATCTAACAACAG 58.728 52.381 0.00 0.00 0.00 3.16
1414 1475 2.094182 GTCCTCGCCATCTAACAACAGA 60.094 50.000 0.00 0.00 0.00 3.41
1415 1476 2.166459 TCCTCGCCATCTAACAACAGAG 59.834 50.000 0.00 0.00 0.00 3.35
1416 1477 1.929836 CTCGCCATCTAACAACAGAGC 59.070 52.381 0.00 0.00 0.00 4.09
1417 1478 1.009829 CGCCATCTAACAACAGAGCC 58.990 55.000 0.00 0.00 0.00 4.70
1418 1479 1.406069 CGCCATCTAACAACAGAGCCT 60.406 52.381 0.00 0.00 0.00 4.58
1419 1480 2.159099 CGCCATCTAACAACAGAGCCTA 60.159 50.000 0.00 0.00 0.00 3.93
1420 1481 3.198872 GCCATCTAACAACAGAGCCTAC 58.801 50.000 0.00 0.00 0.00 3.18
1444 1505 6.032094 CGCCTACGAATGAGTAAACTAGAAA 58.968 40.000 0.00 0.00 43.93 2.52
1520 1581 6.763355 AGATCATGGATTATGGTGTGTACTC 58.237 40.000 0.00 0.00 37.39 2.59
1530 1591 1.204941 GGTGTGTACTCCTGCTACTGG 59.795 57.143 0.00 0.00 0.00 4.00
1539 1606 1.451028 CTGCTACTGGGGCTTGCTC 60.451 63.158 0.00 0.00 0.00 4.26
1540 1607 1.908340 CTGCTACTGGGGCTTGCTCT 61.908 60.000 0.00 0.00 0.00 4.09
1559 1626 5.567552 GCTCTTGCAGCTGAATAAAAGTAG 58.432 41.667 20.43 0.00 45.83 2.57
1560 1627 5.123027 GCTCTTGCAGCTGAATAAAAGTAGT 59.877 40.000 20.43 0.00 45.83 2.73
1561 1628 6.313905 GCTCTTGCAGCTGAATAAAAGTAGTA 59.686 38.462 20.43 0.00 45.83 1.82
1562 1629 7.011857 GCTCTTGCAGCTGAATAAAAGTAGTAT 59.988 37.037 20.43 0.00 45.83 2.12
1563 1630 9.534565 CTCTTGCAGCTGAATAAAAGTAGTATA 57.465 33.333 20.43 0.00 0.00 1.47
1578 1645 9.780186 AAAAGTAGTATATTGTATTGGAGCCTC 57.220 33.333 0.00 0.00 0.00 4.70
1579 1646 8.492415 AAGTAGTATATTGTATTGGAGCCTCA 57.508 34.615 0.00 0.00 0.00 3.86
1580 1647 8.492415 AGTAGTATATTGTATTGGAGCCTCAA 57.508 34.615 0.00 0.00 0.00 3.02
1592 1659 3.780925 GCCTCAAGCAATGTGTGAC 57.219 52.632 0.00 0.00 42.97 3.67
1594 1661 1.229428 CCTCAAGCAATGTGTGACGT 58.771 50.000 0.00 0.00 0.00 4.34
1658 1911 0.033504 GACCGGTCTTCAGCTGAACA 59.966 55.000 27.64 13.03 0.00 3.18
1674 1927 2.828520 TGAACAGAGCTACTCCCTCTTG 59.171 50.000 0.00 0.00 37.57 3.02
1691 1944 5.464168 CCTCTTGATTTGATTTGACCACAC 58.536 41.667 0.00 0.00 0.00 3.82
1709 1962 4.268405 CCACACATTGAAAACTTGTTGAGC 59.732 41.667 0.00 0.00 0.00 4.26
1752 3644 3.640967 AGAGTGGCACCTCTCAGATATTC 59.359 47.826 15.27 0.21 37.20 1.75
1760 3652 4.574013 CACCTCTCAGATATTCTTGGCAAC 59.426 45.833 0.00 0.00 0.00 4.17
1822 3715 6.183360 TGGAAACCAAAAAGTCTGGATAAACC 60.183 38.462 0.00 0.00 37.40 3.27
1903 4562 2.301346 AGTTGAGGGTGTTGCTTTCAG 58.699 47.619 0.00 0.00 0.00 3.02
1946 4605 2.029649 CCTTGATGTGAAGTTTGCTGGG 60.030 50.000 0.00 0.00 0.00 4.45
2000 4659 5.922544 GTCTGGAATTTCCTTCACACAATTG 59.077 40.000 16.25 3.24 37.46 2.32
2001 4660 4.630111 TGGAATTTCCTTCACACAATTGC 58.370 39.130 16.25 0.00 37.46 3.56
2003 4662 3.683365 ATTTCCTTCACACAATTGCCC 57.317 42.857 5.05 0.00 0.00 5.36
2004 4663 2.079170 TTCCTTCACACAATTGCCCA 57.921 45.000 5.05 0.00 0.00 5.36
2005 4664 1.327303 TCCTTCACACAATTGCCCAC 58.673 50.000 5.05 0.00 0.00 4.61
2006 4665 1.133513 TCCTTCACACAATTGCCCACT 60.134 47.619 5.05 0.00 0.00 4.00
2038 6149 7.201470 GCTTTCTTTTCTTTTCCAACTGAACTG 60.201 37.037 0.00 0.00 31.05 3.16
2093 6204 0.106918 TTGACCCAAAAGCCGTCTGT 60.107 50.000 0.00 0.00 0.00 3.41
2102 6213 0.935196 AAGCCGTCTGTGTTTTCGTC 59.065 50.000 0.00 0.00 0.00 4.20
2107 6218 1.931172 CGTCTGTGTTTTCGTCTTGGT 59.069 47.619 0.00 0.00 0.00 3.67
2115 6226 6.217294 TGTGTTTTCGTCTTGGTTTTTCTTT 58.783 32.000 0.00 0.00 0.00 2.52
2148 6259 1.291272 GGCCTTGCCTTTGCTTCTG 59.709 57.895 0.00 0.00 46.69 3.02
2152 6263 1.959282 CCTTGCCTTTGCTTCTGAACT 59.041 47.619 0.00 0.00 38.71 3.01
2163 6274 2.938756 GCTTCTGAACTGGGTCATCTGG 60.939 54.545 0.00 0.00 0.00 3.86
2188 6299 1.805869 CTGTTGGAGAGCACTTCAGG 58.194 55.000 0.00 0.00 32.72 3.86
2211 6322 4.867608 GCTTTCAGCACCTTTTGTACAAAA 59.132 37.500 27.42 27.42 41.89 2.44
2212 6323 5.350091 GCTTTCAGCACCTTTTGTACAAAAA 59.650 36.000 28.52 13.57 41.89 1.94
2322 6433 4.516365 AGCTTTTTGATCTTTGGCTCTG 57.484 40.909 0.00 0.00 0.00 3.35
2323 6434 3.893813 AGCTTTTTGATCTTTGGCTCTGT 59.106 39.130 0.00 0.00 0.00 3.41
2341 6452 2.164491 TGATGTGCGTGACAGCATG 58.836 52.632 5.52 0.00 46.04 4.06
2355 6466 1.884579 CAGCATGCCACCAGATAATCC 59.115 52.381 15.66 0.00 0.00 3.01
2360 6471 4.774124 CATGCCACCAGATAATCCGATAT 58.226 43.478 0.00 0.00 0.00 1.63
2369 6480 5.925397 CCAGATAATCCGATATGATAGCTGC 59.075 44.000 0.00 0.00 0.00 5.25
2403 6514 1.983691 AGATCGATGGGCATTCTGGAT 59.016 47.619 0.54 0.00 0.00 3.41
2404 6515 2.027377 AGATCGATGGGCATTCTGGATC 60.027 50.000 0.54 0.00 0.00 3.36
2405 6516 0.397941 TCGATGGGCATTCTGGATCC 59.602 55.000 4.20 4.20 0.00 3.36
2406 6517 0.399454 CGATGGGCATTCTGGATCCT 59.601 55.000 14.23 0.00 0.00 3.24
2407 6518 1.881072 CGATGGGCATTCTGGATCCTG 60.881 57.143 14.23 13.20 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
15 16 5.291971 CAAACAGTTTTGAAAGGAGATGGG 58.708 41.667 0.00 0.00 44.38 4.00
18 19 4.097892 ACGCAAACAGTTTTGAAAGGAGAT 59.902 37.500 0.00 0.00 44.38 2.75
30 31 4.033587 CAGTACAGTACAACGCAAACAGTT 59.966 41.667 13.37 0.00 0.00 3.16
32 33 3.554324 ACAGTACAGTACAACGCAAACAG 59.446 43.478 13.37 0.00 0.00 3.16
33 34 3.523547 ACAGTACAGTACAACGCAAACA 58.476 40.909 13.37 0.00 0.00 2.83
48 49 2.875317 GGGCCGAGTAGTAGTACAGTAC 59.125 54.545 10.33 2.05 33.79 2.73
49 50 2.774234 AGGGCCGAGTAGTAGTACAGTA 59.226 50.000 10.33 0.00 0.00 2.74
50 51 1.563410 AGGGCCGAGTAGTAGTACAGT 59.437 52.381 10.33 0.00 0.00 3.55
52 53 2.756760 CAAAGGGCCGAGTAGTAGTACA 59.243 50.000 10.33 0.00 0.00 2.90
53 54 2.100418 CCAAAGGGCCGAGTAGTAGTAC 59.900 54.545 0.00 0.00 0.00 2.73
54 55 2.381911 CCAAAGGGCCGAGTAGTAGTA 58.618 52.381 0.00 0.00 0.00 1.82
55 56 1.192428 CCAAAGGGCCGAGTAGTAGT 58.808 55.000 0.00 0.00 0.00 2.73
126 127 3.436700 AAAAAGTACAACAGCCACTGC 57.563 42.857 0.00 0.00 34.37 4.40
160 161 1.943340 GCAGAAGACCGGATTTCATCC 59.057 52.381 9.46 0.52 46.22 3.51
161 162 2.352960 GTGCAGAAGACCGGATTTCATC 59.647 50.000 9.46 0.00 0.00 2.92
162 163 2.359900 GTGCAGAAGACCGGATTTCAT 58.640 47.619 9.46 0.00 0.00 2.57
163 164 1.610624 GGTGCAGAAGACCGGATTTCA 60.611 52.381 9.46 0.00 0.00 2.69
164 165 1.087501 GGTGCAGAAGACCGGATTTC 58.912 55.000 9.46 11.63 0.00 2.17
165 166 0.693049 AGGTGCAGAAGACCGGATTT 59.307 50.000 9.46 0.58 38.64 2.17
166 167 1.482593 CTAGGTGCAGAAGACCGGATT 59.517 52.381 9.46 1.40 38.64 3.01
167 168 1.115467 CTAGGTGCAGAAGACCGGAT 58.885 55.000 9.46 0.00 38.64 4.18
168 169 0.039180 TCTAGGTGCAGAAGACCGGA 59.961 55.000 9.46 0.00 38.64 5.14
169 170 0.173708 GTCTAGGTGCAGAAGACCGG 59.826 60.000 0.00 0.00 38.64 5.28
170 171 0.179161 CGTCTAGGTGCAGAAGACCG 60.179 60.000 14.28 8.17 38.64 4.79
171 172 1.174783 TCGTCTAGGTGCAGAAGACC 58.825 55.000 14.28 0.40 37.02 3.85
172 173 2.803451 CATCGTCTAGGTGCAGAAGAC 58.197 52.381 11.31 11.31 36.16 3.01
180 181 3.560902 ATCGTATGCATCGTCTAGGTG 57.439 47.619 0.19 0.00 0.00 4.00
181 182 4.760715 AGTAATCGTATGCATCGTCTAGGT 59.239 41.667 0.19 0.00 0.00 3.08
182 183 5.298197 AGTAATCGTATGCATCGTCTAGG 57.702 43.478 0.19 0.00 0.00 3.02
183 184 8.897457 ATAAAGTAATCGTATGCATCGTCTAG 57.103 34.615 0.19 0.00 0.00 2.43
185 186 9.687210 TTAATAAAGTAATCGTATGCATCGTCT 57.313 29.630 0.19 2.04 0.00 4.18
211 212 9.646427 GACTTTGTAGAGTCTTGTGAGAATAAT 57.354 33.333 0.00 0.00 42.18 1.28
212 213 8.638873 TGACTTTGTAGAGTCTTGTGAGAATAA 58.361 33.333 0.00 0.00 44.99 1.40
213 214 8.178313 TGACTTTGTAGAGTCTTGTGAGAATA 57.822 34.615 0.00 0.00 44.99 1.75
214 215 7.055667 TGACTTTGTAGAGTCTTGTGAGAAT 57.944 36.000 0.00 0.00 44.99 2.40
215 216 6.465439 TGACTTTGTAGAGTCTTGTGAGAA 57.535 37.500 0.00 0.00 44.99 2.87
216 217 6.656632 ATGACTTTGTAGAGTCTTGTGAGA 57.343 37.500 0.00 0.00 44.99 3.27
217 218 7.371159 TGTATGACTTTGTAGAGTCTTGTGAG 58.629 38.462 0.00 0.00 44.99 3.51
218 219 7.284919 TGTATGACTTTGTAGAGTCTTGTGA 57.715 36.000 0.00 0.00 44.99 3.58
219 220 7.438160 TGTTGTATGACTTTGTAGAGTCTTGTG 59.562 37.037 0.00 0.00 44.99 3.33
220 221 7.497595 TGTTGTATGACTTTGTAGAGTCTTGT 58.502 34.615 0.00 0.00 44.99 3.16
221 222 7.653713 ACTGTTGTATGACTTTGTAGAGTCTTG 59.346 37.037 0.00 0.00 44.99 3.02
222 223 7.727181 ACTGTTGTATGACTTTGTAGAGTCTT 58.273 34.615 0.00 3.29 44.99 3.01
223 224 7.291411 ACTGTTGTATGACTTTGTAGAGTCT 57.709 36.000 0.00 0.00 44.99 3.24
224 225 9.472361 TTTACTGTTGTATGACTTTGTAGAGTC 57.528 33.333 0.00 0.00 44.97 3.36
225 226 9.477484 CTTTACTGTTGTATGACTTTGTAGAGT 57.523 33.333 0.00 0.00 0.00 3.24
226 227 8.436200 GCTTTACTGTTGTATGACTTTGTAGAG 58.564 37.037 0.00 0.00 0.00 2.43
227 228 8.148351 AGCTTTACTGTTGTATGACTTTGTAGA 58.852 33.333 0.00 0.00 0.00 2.59
228 229 8.311650 AGCTTTACTGTTGTATGACTTTGTAG 57.688 34.615 0.00 0.00 0.00 2.74
229 230 9.767228 TTAGCTTTACTGTTGTATGACTTTGTA 57.233 29.630 0.00 0.00 0.00 2.41
230 231 8.671384 TTAGCTTTACTGTTGTATGACTTTGT 57.329 30.769 0.00 0.00 0.00 2.83
231 232 9.944663 TTTTAGCTTTACTGTTGTATGACTTTG 57.055 29.630 0.00 0.00 0.00 2.77
240 241 9.216117 AGACGATATTTTTAGCTTTACTGTTGT 57.784 29.630 0.00 0.00 0.00 3.32
256 257 8.380644 CGACAGTTTGTTGATTAGACGATATTT 58.619 33.333 0.00 0.00 33.58 1.40
257 258 7.464178 GCGACAGTTTGTTGATTAGACGATATT 60.464 37.037 0.68 0.00 33.58 1.28
258 259 6.019801 GCGACAGTTTGTTGATTAGACGATAT 60.020 38.462 0.68 0.00 33.58 1.63
259 260 5.287752 GCGACAGTTTGTTGATTAGACGATA 59.712 40.000 0.68 0.00 33.58 2.92
260 261 4.091509 GCGACAGTTTGTTGATTAGACGAT 59.908 41.667 0.68 0.00 33.58 3.73
261 262 3.427528 GCGACAGTTTGTTGATTAGACGA 59.572 43.478 0.68 0.00 33.58 4.20
262 263 3.428870 AGCGACAGTTTGTTGATTAGACG 59.571 43.478 0.68 0.00 33.58 4.18
263 264 4.992381 AGCGACAGTTTGTTGATTAGAC 57.008 40.909 0.68 0.00 33.58 2.59
264 265 5.534407 TGTAGCGACAGTTTGTTGATTAGA 58.466 37.500 0.00 0.00 33.58 2.10
265 266 5.839262 TGTAGCGACAGTTTGTTGATTAG 57.161 39.130 0.00 0.00 33.58 1.73
266 267 6.163476 AGATGTAGCGACAGTTTGTTGATTA 58.837 36.000 5.72 0.00 39.50 1.75
267 268 4.997395 AGATGTAGCGACAGTTTGTTGATT 59.003 37.500 5.72 0.00 39.50 2.57
268 269 4.569943 AGATGTAGCGACAGTTTGTTGAT 58.430 39.130 5.72 0.00 39.50 2.57
269 270 3.990092 AGATGTAGCGACAGTTTGTTGA 58.010 40.909 5.72 0.00 39.50 3.18
270 271 5.005779 GGATAGATGTAGCGACAGTTTGTTG 59.994 44.000 5.72 0.00 39.50 3.33
271 272 5.109903 GGATAGATGTAGCGACAGTTTGTT 58.890 41.667 5.72 0.00 39.50 2.83
272 273 4.159693 TGGATAGATGTAGCGACAGTTTGT 59.840 41.667 5.72 0.00 39.50 2.83
273 274 4.682787 TGGATAGATGTAGCGACAGTTTG 58.317 43.478 5.72 0.00 39.50 2.93
274 275 4.402793 ACTGGATAGATGTAGCGACAGTTT 59.597 41.667 5.72 0.00 39.50 2.66
275 276 3.954904 ACTGGATAGATGTAGCGACAGTT 59.045 43.478 5.72 0.00 39.50 3.16
276 277 3.556999 ACTGGATAGATGTAGCGACAGT 58.443 45.455 5.72 0.00 39.50 3.55
277 278 4.036852 TCAACTGGATAGATGTAGCGACAG 59.963 45.833 5.72 0.00 39.50 3.51
278 279 3.951680 TCAACTGGATAGATGTAGCGACA 59.048 43.478 0.95 0.95 40.72 4.35
279 280 4.569761 TCAACTGGATAGATGTAGCGAC 57.430 45.455 0.00 0.00 0.00 5.19
280 281 4.827284 TCATCAACTGGATAGATGTAGCGA 59.173 41.667 0.00 0.00 39.96 4.93
281 282 5.126396 TCATCAACTGGATAGATGTAGCG 57.874 43.478 0.00 0.00 39.96 4.26
282 283 5.931146 CCTTCATCAACTGGATAGATGTAGC 59.069 44.000 0.00 0.00 39.96 3.58
283 284 6.268617 TCCCTTCATCAACTGGATAGATGTAG 59.731 42.308 0.00 0.00 39.96 2.74
284 285 6.042093 GTCCCTTCATCAACTGGATAGATGTA 59.958 42.308 0.00 0.00 39.96 2.29
285 286 4.971282 TCCCTTCATCAACTGGATAGATGT 59.029 41.667 0.00 0.00 39.96 3.06
286 287 5.303971 GTCCCTTCATCAACTGGATAGATG 58.696 45.833 0.00 0.00 40.29 2.90
287 288 4.039730 CGTCCCTTCATCAACTGGATAGAT 59.960 45.833 0.00 0.00 33.95 1.98
288 289 3.384789 CGTCCCTTCATCAACTGGATAGA 59.615 47.826 0.00 0.00 33.95 1.98
289 290 3.722147 CGTCCCTTCATCAACTGGATAG 58.278 50.000 0.00 0.00 33.95 2.08
290 291 2.158957 GCGTCCCTTCATCAACTGGATA 60.159 50.000 0.00 0.00 33.95 2.59
291 292 1.407437 GCGTCCCTTCATCAACTGGAT 60.407 52.381 0.00 0.00 36.39 3.41
292 293 0.036388 GCGTCCCTTCATCAACTGGA 60.036 55.000 0.00 0.00 0.00 3.86
293 294 0.321564 TGCGTCCCTTCATCAACTGG 60.322 55.000 0.00 0.00 0.00 4.00
294 295 1.081892 CTGCGTCCCTTCATCAACTG 58.918 55.000 0.00 0.00 0.00 3.16
295 296 0.976641 TCTGCGTCCCTTCATCAACT 59.023 50.000 0.00 0.00 0.00 3.16
296 297 2.029838 ATCTGCGTCCCTTCATCAAC 57.970 50.000 0.00 0.00 0.00 3.18
297 298 2.483714 GCTATCTGCGTCCCTTCATCAA 60.484 50.000 0.00 0.00 0.00 2.57
298 299 1.069204 GCTATCTGCGTCCCTTCATCA 59.931 52.381 0.00 0.00 0.00 3.07
299 300 1.606737 GGCTATCTGCGTCCCTTCATC 60.607 57.143 0.00 0.00 44.05 2.92
300 301 0.394565 GGCTATCTGCGTCCCTTCAT 59.605 55.000 0.00 0.00 44.05 2.57
301 302 0.687757 AGGCTATCTGCGTCCCTTCA 60.688 55.000 0.00 0.00 44.05 3.02
302 303 0.249657 CAGGCTATCTGCGTCCCTTC 60.250 60.000 0.00 0.00 44.05 3.46
303 304 1.690219 CCAGGCTATCTGCGTCCCTT 61.690 60.000 0.00 0.00 44.05 3.95
304 305 2.136878 CCAGGCTATCTGCGTCCCT 61.137 63.158 0.00 0.00 44.05 4.20
305 306 2.423446 CCAGGCTATCTGCGTCCC 59.577 66.667 0.00 0.00 44.05 4.46
306 307 2.423446 CCCAGGCTATCTGCGTCC 59.577 66.667 0.00 0.00 44.05 4.79
307 308 2.280457 GCCCAGGCTATCTGCGTC 60.280 66.667 0.08 0.00 44.05 5.19
308 309 2.946988 TAGGCCCAGGCTATCTGCGT 62.947 60.000 8.89 0.00 44.05 5.24
309 310 1.758440 TTAGGCCCAGGCTATCTGCG 61.758 60.000 8.89 0.00 40.30 5.18
310 311 0.695347 ATTAGGCCCAGGCTATCTGC 59.305 55.000 8.89 0.00 40.30 4.26
311 312 2.237392 GGTATTAGGCCCAGGCTATCTG 59.763 54.545 8.89 0.00 40.30 2.90
312 313 2.158004 TGGTATTAGGCCCAGGCTATCT 60.158 50.000 8.89 0.00 40.30 1.98
313 314 2.266279 TGGTATTAGGCCCAGGCTATC 58.734 52.381 8.89 0.00 40.30 2.08
314 315 2.433444 TGGTATTAGGCCCAGGCTAT 57.567 50.000 8.89 0.32 40.30 2.97
315 316 2.173996 GTTTGGTATTAGGCCCAGGCTA 59.826 50.000 8.89 0.00 39.70 3.93
316 317 1.063942 GTTTGGTATTAGGCCCAGGCT 60.064 52.381 8.89 0.35 42.39 4.58
317 318 1.341581 TGTTTGGTATTAGGCCCAGGC 60.342 52.381 0.00 0.00 41.06 4.85
318 319 2.241176 TCTGTTTGGTATTAGGCCCAGG 59.759 50.000 0.00 0.00 31.04 4.45
319 320 3.279434 GTCTGTTTGGTATTAGGCCCAG 58.721 50.000 0.00 0.00 31.04 4.45
320 321 2.645297 TGTCTGTTTGGTATTAGGCCCA 59.355 45.455 0.00 0.00 0.00 5.36
321 322 3.359695 TGTCTGTTTGGTATTAGGCCC 57.640 47.619 0.00 0.00 0.00 5.80
322 323 3.560068 CGATGTCTGTTTGGTATTAGGCC 59.440 47.826 0.00 0.00 0.00 5.19
323 324 3.002348 GCGATGTCTGTTTGGTATTAGGC 59.998 47.826 0.00 0.00 0.00 3.93
324 325 4.188462 TGCGATGTCTGTTTGGTATTAGG 58.812 43.478 0.00 0.00 0.00 2.69
325 326 5.447279 GGTTGCGATGTCTGTTTGGTATTAG 60.447 44.000 0.00 0.00 0.00 1.73
326 327 4.393680 GGTTGCGATGTCTGTTTGGTATTA 59.606 41.667 0.00 0.00 0.00 0.98
327 328 3.190535 GGTTGCGATGTCTGTTTGGTATT 59.809 43.478 0.00 0.00 0.00 1.89
328 329 2.747446 GGTTGCGATGTCTGTTTGGTAT 59.253 45.455 0.00 0.00 0.00 2.73
329 330 2.147958 GGTTGCGATGTCTGTTTGGTA 58.852 47.619 0.00 0.00 0.00 3.25
330 331 0.951558 GGTTGCGATGTCTGTTTGGT 59.048 50.000 0.00 0.00 0.00 3.67
331 332 0.950836 TGGTTGCGATGTCTGTTTGG 59.049 50.000 0.00 0.00 0.00 3.28
332 333 2.772568 TTGGTTGCGATGTCTGTTTG 57.227 45.000 0.00 0.00 0.00 2.93
333 334 2.223711 GGTTTGGTTGCGATGTCTGTTT 60.224 45.455 0.00 0.00 0.00 2.83
334 335 1.336755 GGTTTGGTTGCGATGTCTGTT 59.663 47.619 0.00 0.00 0.00 3.16
335 336 0.951558 GGTTTGGTTGCGATGTCTGT 59.048 50.000 0.00 0.00 0.00 3.41
336 337 1.238439 AGGTTTGGTTGCGATGTCTG 58.762 50.000 0.00 0.00 0.00 3.51
337 338 2.812011 GTTAGGTTTGGTTGCGATGTCT 59.188 45.455 0.00 0.00 0.00 3.41
338 339 2.550606 TGTTAGGTTTGGTTGCGATGTC 59.449 45.455 0.00 0.00 0.00 3.06
339 340 2.577700 TGTTAGGTTTGGTTGCGATGT 58.422 42.857 0.00 0.00 0.00 3.06
340 341 3.848272 ATGTTAGGTTTGGTTGCGATG 57.152 42.857 0.00 0.00 0.00 3.84
341 342 4.864704 AAATGTTAGGTTTGGTTGCGAT 57.135 36.364 0.00 0.00 0.00 4.58
342 343 5.531659 TCTTAAATGTTAGGTTTGGTTGCGA 59.468 36.000 0.00 0.00 0.00 5.10
343 344 5.627780 GTCTTAAATGTTAGGTTTGGTTGCG 59.372 40.000 0.00 0.00 0.00 4.85
344 345 5.924254 GGTCTTAAATGTTAGGTTTGGTTGC 59.076 40.000 0.00 0.00 0.00 4.17
345 346 7.284919 AGGTCTTAAATGTTAGGTTTGGTTG 57.715 36.000 0.00 0.00 0.00 3.77
346 347 8.999905 TTAGGTCTTAAATGTTAGGTTTGGTT 57.000 30.769 0.00 0.00 0.00 3.67
347 348 8.442374 TCTTAGGTCTTAAATGTTAGGTTTGGT 58.558 33.333 0.00 0.00 0.00 3.67
348 349 8.727910 GTCTTAGGTCTTAAATGTTAGGTTTGG 58.272 37.037 0.00 0.00 0.00 3.28
349 350 8.727910 GGTCTTAGGTCTTAAATGTTAGGTTTG 58.272 37.037 0.00 0.00 0.00 2.93
350 351 7.886970 GGGTCTTAGGTCTTAAATGTTAGGTTT 59.113 37.037 0.00 0.00 0.00 3.27
351 352 7.400439 GGGTCTTAGGTCTTAAATGTTAGGTT 58.600 38.462 0.00 0.00 0.00 3.50
352 353 6.069789 GGGGTCTTAGGTCTTAAATGTTAGGT 60.070 42.308 0.00 0.00 0.00 3.08
353 354 6.069847 TGGGGTCTTAGGTCTTAAATGTTAGG 60.070 42.308 0.00 0.00 0.00 2.69
354 355 6.954232 TGGGGTCTTAGGTCTTAAATGTTAG 58.046 40.000 0.00 0.00 0.00 2.34
355 356 6.956102 TGGGGTCTTAGGTCTTAAATGTTA 57.044 37.500 0.00 0.00 0.00 2.41
356 357 5.853572 TGGGGTCTTAGGTCTTAAATGTT 57.146 39.130 0.00 0.00 0.00 2.71
357 358 5.853572 TTGGGGTCTTAGGTCTTAAATGT 57.146 39.130 0.00 0.00 0.00 2.71
358 359 7.718334 AAATTGGGGTCTTAGGTCTTAAATG 57.282 36.000 0.00 0.00 0.00 2.32
359 360 7.560262 GCTAAATTGGGGTCTTAGGTCTTAAAT 59.440 37.037 0.00 0.00 0.00 1.40
360 361 6.888088 GCTAAATTGGGGTCTTAGGTCTTAAA 59.112 38.462 0.00 0.00 0.00 1.52
361 362 6.420638 GCTAAATTGGGGTCTTAGGTCTTAA 58.579 40.000 0.00 0.00 0.00 1.85
362 363 5.104235 GGCTAAATTGGGGTCTTAGGTCTTA 60.104 44.000 0.00 0.00 0.00 2.10
363 364 4.325109 GGCTAAATTGGGGTCTTAGGTCTT 60.325 45.833 0.00 0.00 0.00 3.01
364 365 3.202373 GGCTAAATTGGGGTCTTAGGTCT 59.798 47.826 0.00 0.00 0.00 3.85
365 366 3.053917 TGGCTAAATTGGGGTCTTAGGTC 60.054 47.826 0.00 0.00 0.00 3.85
366 367 2.923629 TGGCTAAATTGGGGTCTTAGGT 59.076 45.455 0.00 0.00 0.00 3.08
367 368 3.053619 AGTGGCTAAATTGGGGTCTTAGG 60.054 47.826 0.00 0.00 0.00 2.69
368 369 4.236527 AGTGGCTAAATTGGGGTCTTAG 57.763 45.455 0.00 0.00 0.00 2.18
369 370 4.340617 CAAGTGGCTAAATTGGGGTCTTA 58.659 43.478 0.00 0.00 0.00 2.10
370 371 3.165071 CAAGTGGCTAAATTGGGGTCTT 58.835 45.455 0.00 0.00 0.00 3.01
371 372 2.807676 CAAGTGGCTAAATTGGGGTCT 58.192 47.619 0.00 0.00 0.00 3.85
372 373 1.204704 GCAAGTGGCTAAATTGGGGTC 59.795 52.381 3.10 0.00 40.25 4.46
373 374 1.266178 GCAAGTGGCTAAATTGGGGT 58.734 50.000 3.10 0.00 40.25 4.95
374 375 0.536724 GGCAAGTGGCTAAATTGGGG 59.463 55.000 0.00 0.00 44.01 4.96
375 376 0.173255 CGGCAAGTGGCTAAATTGGG 59.827 55.000 3.18 0.00 44.01 4.12
376 377 0.173255 CCGGCAAGTGGCTAAATTGG 59.827 55.000 3.18 0.00 44.01 3.16
377 378 0.173255 CCCGGCAAGTGGCTAAATTG 59.827 55.000 0.00 0.00 44.01 2.32
378 379 0.251608 ACCCGGCAAGTGGCTAAATT 60.252 50.000 0.00 0.00 44.01 1.82
379 380 0.679960 GACCCGGCAAGTGGCTAAAT 60.680 55.000 0.00 0.00 44.01 1.40
380 381 1.302993 GACCCGGCAAGTGGCTAAA 60.303 57.895 0.00 0.00 44.01 1.85
381 382 2.221299 AGACCCGGCAAGTGGCTAA 61.221 57.895 0.00 0.00 44.01 3.09
382 383 2.606519 AGACCCGGCAAGTGGCTA 60.607 61.111 0.00 0.00 44.01 3.93
383 384 4.335647 CAGACCCGGCAAGTGGCT 62.336 66.667 0.00 0.00 44.01 4.75
384 385 3.842925 TTCAGACCCGGCAAGTGGC 62.843 63.158 0.00 0.00 43.74 5.01
385 386 1.672356 CTTCAGACCCGGCAAGTGG 60.672 63.158 0.00 0.00 0.00 4.00
386 387 2.328099 GCTTCAGACCCGGCAAGTG 61.328 63.158 0.00 0.00 0.00 3.16
387 388 2.032681 GCTTCAGACCCGGCAAGT 59.967 61.111 0.00 0.00 0.00 3.16
388 389 2.032528 TGCTTCAGACCCGGCAAG 59.967 61.111 0.00 0.00 0.00 4.01
389 390 2.281484 GTGCTTCAGACCCGGCAA 60.281 61.111 0.00 0.00 36.43 4.52
390 391 3.555324 TGTGCTTCAGACCCGGCA 61.555 61.111 0.00 0.00 0.00 5.69
391 392 3.050275 GTGTGCTTCAGACCCGGC 61.050 66.667 0.00 0.00 0.00 6.13
392 393 1.961277 GTGTGTGCTTCAGACCCGG 60.961 63.158 0.00 0.00 34.75 5.73
393 394 1.069765 AGTGTGTGCTTCAGACCCG 59.930 57.895 6.25 0.00 40.60 5.28
394 395 2.621763 CAGTGTGTGCTTCAGACCC 58.378 57.895 6.25 0.00 40.60 4.46
404 405 1.006220 TCTACGGCTGCAGTGTGTG 60.006 57.895 16.64 11.46 0.00 3.82
405 406 1.290324 CTCTACGGCTGCAGTGTGT 59.710 57.895 16.64 13.52 0.00 3.72
406 407 1.446792 CCTCTACGGCTGCAGTGTG 60.447 63.158 16.64 7.98 0.00 3.82
407 408 1.878656 GACCTCTACGGCTGCAGTGT 61.879 60.000 16.64 16.40 35.61 3.55
408 409 1.153745 GACCTCTACGGCTGCAGTG 60.154 63.158 16.64 11.03 35.61 3.66
417 418 2.546795 GCCATTGGATGAGACCTCTACG 60.547 54.545 6.95 0.00 0.00 3.51
419 420 3.051940 AGCCATTGGATGAGACCTCTA 57.948 47.619 6.95 0.00 0.00 2.43
439 440 2.831685 AGTTCGTGTGTGAGCCATAA 57.168 45.000 0.00 0.00 0.00 1.90
440 441 2.805671 CAAAGTTCGTGTGTGAGCCATA 59.194 45.455 0.00 0.00 0.00 2.74
442 443 1.013596 CAAAGTTCGTGTGTGAGCCA 58.986 50.000 0.00 0.00 0.00 4.75
443 444 1.003866 GTCAAAGTTCGTGTGTGAGCC 60.004 52.381 0.00 0.00 0.00 4.70
444 445 1.332028 CGTCAAAGTTCGTGTGTGAGC 60.332 52.381 0.00 0.00 0.00 4.26
445 446 1.332028 GCGTCAAAGTTCGTGTGTGAG 60.332 52.381 0.00 0.00 0.00 3.51
446 447 0.648441 GCGTCAAAGTTCGTGTGTGA 59.352 50.000 0.00 0.00 0.00 3.58
447 448 0.371989 TGCGTCAAAGTTCGTGTGTG 59.628 50.000 0.00 0.00 0.00 3.82
448 449 0.372334 GTGCGTCAAAGTTCGTGTGT 59.628 50.000 0.00 0.00 0.00 3.72
449 450 0.315869 GGTGCGTCAAAGTTCGTGTG 60.316 55.000 0.00 0.00 0.00 3.82
450 451 0.461339 AGGTGCGTCAAAGTTCGTGT 60.461 50.000 0.00 0.00 0.00 4.49
451 452 1.455786 CTAGGTGCGTCAAAGTTCGTG 59.544 52.381 0.00 0.00 0.00 4.35
452 453 1.779569 CTAGGTGCGTCAAAGTTCGT 58.220 50.000 0.00 0.00 0.00 3.85
453 454 0.438830 GCTAGGTGCGTCAAAGTTCG 59.561 55.000 0.00 0.00 0.00 3.95
467 468 2.357034 ACACGGTGCAACGCTAGG 60.357 61.111 26.87 14.10 38.12 3.02
483 484 0.324943 TCCCCAGCTTAGTGCAAGAC 59.675 55.000 0.00 0.00 45.94 3.01
486 487 2.373335 TTTTCCCCAGCTTAGTGCAA 57.627 45.000 0.00 0.00 45.94 4.08
506 509 2.334653 CGGTGGCAAACATGCGTT 59.665 55.556 0.00 0.00 36.73 4.84
519 522 1.439679 GGACAAGTTTAGGAGCGGTG 58.560 55.000 0.00 0.00 0.00 4.94
524 527 1.542915 TCGTCGGGACAAGTTTAGGAG 59.457 52.381 0.00 0.00 0.00 3.69
547 557 5.649782 ACTCTAGGTGCCATTTTCATTTG 57.350 39.130 0.00 0.00 0.00 2.32
559 569 3.128242 TGAAGCGTTACTACTCTAGGTGC 59.872 47.826 0.00 0.00 0.00 5.01
562 572 6.183359 CGTTTTTGAAGCGTTACTACTCTAGG 60.183 42.308 0.00 0.00 0.00 3.02
563 573 6.666918 GCGTTTTTGAAGCGTTACTACTCTAG 60.667 42.308 0.00 0.00 37.43 2.43
566 576 4.139531 GCGTTTTTGAAGCGTTACTACTC 58.860 43.478 0.00 0.00 37.43 2.59
595 614 1.819632 GTGCGTGCTTATCCCTGGG 60.820 63.158 6.33 6.33 0.00 4.45
614 633 2.799540 GCTTATATAGGCCGCGCGC 61.800 63.158 27.36 23.91 0.00 6.86
615 634 1.153823 AGCTTATATAGGCCGCGCG 60.154 57.895 25.67 25.67 0.00 6.86
616 635 1.696832 GCAGCTTATATAGGCCGCGC 61.697 60.000 12.85 9.83 0.00 6.86
617 636 0.108615 AGCAGCTTATATAGGCCGCG 60.109 55.000 16.62 0.00 36.88 6.46
687 722 0.533755 GTGGAGGCGATGGATTGAGG 60.534 60.000 0.00 0.00 0.00 3.86
710 745 4.208686 GGAGCGCGGTACTGGAGG 62.209 72.222 14.55 0.00 0.00 4.30
729 764 4.193653 GAGGAAGCCTCTTGCGAC 57.806 61.111 6.23 0.00 46.41 5.19
765 805 2.571757 CGTAGGCTTCGGTCTGCA 59.428 61.111 5.55 0.00 31.76 4.41
767 807 2.579787 CGCGTAGGCTTCGGTCTG 60.580 66.667 15.34 0.00 36.88 3.51
1263 1324 2.069430 GGGGGAGGAAGAGGCAGAG 61.069 68.421 0.00 0.00 0.00 3.35
1416 1477 3.976793 TTACTCATTCGTAGGCGTAGG 57.023 47.619 0.00 0.00 39.49 3.18
1417 1478 4.918037 AGTTTACTCATTCGTAGGCGTAG 58.082 43.478 0.00 0.00 39.49 3.51
1418 1479 4.970662 AGTTTACTCATTCGTAGGCGTA 57.029 40.909 0.00 0.00 39.49 4.42
1419 1480 3.863142 AGTTTACTCATTCGTAGGCGT 57.137 42.857 0.00 0.00 39.49 5.68
1420 1481 5.165911 TCTAGTTTACTCATTCGTAGGCG 57.834 43.478 0.00 0.00 39.92 5.52
1479 1540 7.657354 TCCATGATCTAGACCAAATAAATCACG 59.343 37.037 0.00 0.00 0.00 4.35
1520 1581 2.439156 GCAAGCCCCAGTAGCAGG 60.439 66.667 0.00 0.00 0.00 4.85
1559 1626 5.997746 TGCTTGAGGCTCCAATACAATATAC 59.002 40.000 12.86 0.00 42.39 1.47
1560 1627 6.186420 TGCTTGAGGCTCCAATACAATATA 57.814 37.500 12.86 0.00 42.39 0.86
1561 1628 5.052693 TGCTTGAGGCTCCAATACAATAT 57.947 39.130 12.86 0.00 42.39 1.28
1562 1629 4.502105 TGCTTGAGGCTCCAATACAATA 57.498 40.909 12.86 0.00 42.39 1.90
1563 1630 3.370840 TGCTTGAGGCTCCAATACAAT 57.629 42.857 12.86 0.00 42.39 2.71
1564 1631 2.877097 TGCTTGAGGCTCCAATACAA 57.123 45.000 12.86 0.00 42.39 2.41
1565 1632 2.877097 TTGCTTGAGGCTCCAATACA 57.123 45.000 12.86 5.48 42.39 2.29
1578 1645 1.330213 TGACACGTCACACATTGCTTG 59.670 47.619 0.00 0.00 34.14 4.01
1579 1646 1.662517 TGACACGTCACACATTGCTT 58.337 45.000 0.00 0.00 34.14 3.91
1580 1647 3.377933 TGACACGTCACACATTGCT 57.622 47.368 0.00 0.00 34.14 3.91
1612 1681 4.775253 ACACCAAGGAAACAGAAAAGGAAA 59.225 37.500 0.00 0.00 0.00 3.13
1615 1684 3.699038 TGACACCAAGGAAACAGAAAAGG 59.301 43.478 0.00 0.00 0.00 3.11
1620 1689 3.476552 GTCATGACACCAAGGAAACAGA 58.523 45.455 21.07 0.00 0.00 3.41
1658 1911 4.357325 TCAAATCAAGAGGGAGTAGCTCT 58.643 43.478 0.00 0.00 0.00 4.09
1674 1927 7.712264 TTTCAATGTGTGGTCAAATCAAATC 57.288 32.000 0.00 0.00 0.00 2.17
1691 1944 4.053295 CCTGGCTCAACAAGTTTTCAATG 58.947 43.478 0.00 0.00 0.00 2.82
1776 3668 1.620323 GCAAGCTTGGATTTGTTCCCT 59.380 47.619 27.10 0.00 44.77 4.20
1780 3672 2.318908 TCCAGCAAGCTTGGATTTGTT 58.681 42.857 27.10 0.00 0.00 2.83
1797 3689 6.183360 GGTTTATCCAGACTTTTTGGTTTCCA 60.183 38.462 0.00 0.00 37.02 3.53
1822 3715 2.654749 TCTCTGCATCCGTGTACTTG 57.345 50.000 0.00 0.00 0.00 3.16
1823 3716 3.195610 TGAATCTCTGCATCCGTGTACTT 59.804 43.478 0.00 0.00 0.00 2.24
1883 4542 2.301346 CTGAAAGCAACACCCTCAACT 58.699 47.619 0.00 0.00 0.00 3.16
1946 4605 1.026718 CCTCAAGTGCCATCGGGAAC 61.027 60.000 0.00 0.00 43.98 3.62
2000 4659 3.459232 AAAGAAAGCAGAAAAGTGGGC 57.541 42.857 0.00 0.00 0.00 5.36
2001 4660 5.268118 AGAAAAGAAAGCAGAAAAGTGGG 57.732 39.130 0.00 0.00 0.00 4.61
2003 4662 7.331687 TGGAAAAGAAAAGAAAGCAGAAAAGTG 59.668 33.333 0.00 0.00 0.00 3.16
2004 4663 7.386059 TGGAAAAGAAAAGAAAGCAGAAAAGT 58.614 30.769 0.00 0.00 0.00 2.66
2005 4664 7.832503 TGGAAAAGAAAAGAAAGCAGAAAAG 57.167 32.000 0.00 0.00 0.00 2.27
2006 4665 7.877612 AGTTGGAAAAGAAAAGAAAGCAGAAAA 59.122 29.630 0.00 0.00 0.00 2.29
2038 6149 3.064408 GTCGGAAATAATTGGGAACGGAC 59.936 47.826 0.00 0.00 0.00 4.79
2093 6204 7.716768 AAAAAGAAAAACCAAGACGAAAACA 57.283 28.000 0.00 0.00 0.00 2.83
2115 6226 3.260632 GCAAGGCCCCAAGATAAGAAAAA 59.739 43.478 0.00 0.00 0.00 1.94
2131 6242 0.675633 TTCAGAAGCAAAGGCAAGGC 59.324 50.000 0.00 0.00 44.61 4.35
2133 6244 2.288030 CCAGTTCAGAAGCAAAGGCAAG 60.288 50.000 0.00 0.00 44.61 4.01
2134 6245 1.682854 CCAGTTCAGAAGCAAAGGCAA 59.317 47.619 0.00 0.00 44.61 4.52
2146 6257 1.625315 TGTCCAGATGACCCAGTTCAG 59.375 52.381 0.00 0.00 43.78 3.02
2148 6259 2.636830 CATGTCCAGATGACCCAGTTC 58.363 52.381 0.00 0.00 43.78 3.01
2152 6263 0.253894 CAGCATGTCCAGATGACCCA 59.746 55.000 0.00 0.00 43.78 4.51
2211 6322 5.303333 TGGATTTTCTAAAAACCGCTCCTTT 59.697 36.000 9.18 0.00 41.98 3.11
2212 6323 4.830600 TGGATTTTCTAAAAACCGCTCCTT 59.169 37.500 9.18 0.00 41.98 3.36
2215 6326 5.525199 TGTTGGATTTTCTAAAAACCGCTC 58.475 37.500 9.18 4.28 41.98 5.03
2218 6329 7.764695 AACTTGTTGGATTTTCTAAAAACCG 57.235 32.000 9.18 0.00 41.98 4.44
2230 6341 9.498176 ACGAAGTAAAGTATAACTTGTTGGATT 57.502 29.630 0.00 0.00 41.94 3.01
2255 6366 7.433425 CAGTGAAATCCTCAACTTTTCTCAAAC 59.567 37.037 0.00 0.00 35.22 2.93
2322 6433 0.179207 CATGCTGTCACGCACATCAC 60.179 55.000 0.00 0.00 43.61 3.06
2323 6434 1.914531 GCATGCTGTCACGCACATCA 61.915 55.000 11.37 0.00 43.61 3.07
2341 6452 4.471904 TCATATCGGATTATCTGGTGGC 57.528 45.455 0.76 0.00 0.00 5.01
2355 6466 3.242706 CCGAGAGAGCAGCTATCATATCG 60.243 52.174 19.19 17.58 34.49 2.92
2360 6471 0.753111 TGCCGAGAGAGCAGCTATCA 60.753 55.000 19.19 0.00 34.49 2.15
2369 6480 1.606189 TCGATCTCATTGCCGAGAGAG 59.394 52.381 0.00 0.00 44.97 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.