Multiple sequence alignment - TraesCS4A01G115500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G115500 chr4A 100.000 2234 0 0 1 2234 140752163 140754396 0.000000e+00 4126.0
1 TraesCS4A01G115500 chr4B 96.754 1294 41 1 60 1352 478451604 478452897 0.000000e+00 2156.0
2 TraesCS4A01G115500 chr4B 85.512 283 24 5 1579 1857 409345760 409345491 1.690000e-71 279.0
3 TraesCS4A01G115500 chr3A 96.677 1294 41 2 60 1351 143538768 143540061 0.000000e+00 2150.0
4 TraesCS4A01G115500 chr5A 96.674 1293 42 1 60 1351 625913890 625915182 0.000000e+00 2148.0
5 TraesCS4A01G115500 chr1A 96.092 1305 48 2 60 1361 313486399 313487703 0.000000e+00 2124.0
6 TraesCS4A01G115500 chr1A 96.219 1296 48 1 60 1354 186735114 186733819 0.000000e+00 2121.0
7 TraesCS4A01G115500 chr5B 96.210 1293 48 1 60 1351 402873346 402872054 0.000000e+00 2115.0
8 TraesCS4A01G115500 chr2A 96.059 1294 50 1 60 1352 7825110 7826403 0.000000e+00 2106.0
9 TraesCS4A01G115500 chr6A 96.056 1293 49 2 60 1351 539671757 539673048 0.000000e+00 2104.0
10 TraesCS4A01G115500 chr7B 95.901 1293 52 1 60 1351 217621799 217620507 0.000000e+00 2093.0
11 TraesCS4A01G115500 chr4D 88.499 513 42 4 1349 1857 329317855 329317356 2.450000e-169 604.0
12 TraesCS4A01G115500 chr4D 93.617 47 3 0 4 50 329317885 329317839 1.110000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G115500 chr4A 140752163 140754396 2233 False 4126.00 4126 100.000 1 2234 1 chr4A.!!$F1 2233
1 TraesCS4A01G115500 chr4B 478451604 478452897 1293 False 2156.00 2156 96.754 60 1352 1 chr4B.!!$F1 1292
2 TraesCS4A01G115500 chr3A 143538768 143540061 1293 False 2150.00 2150 96.677 60 1351 1 chr3A.!!$F1 1291
3 TraesCS4A01G115500 chr5A 625913890 625915182 1292 False 2148.00 2148 96.674 60 1351 1 chr5A.!!$F1 1291
4 TraesCS4A01G115500 chr1A 313486399 313487703 1304 False 2124.00 2124 96.092 60 1361 1 chr1A.!!$F1 1301
5 TraesCS4A01G115500 chr1A 186733819 186735114 1295 True 2121.00 2121 96.219 60 1354 1 chr1A.!!$R1 1294
6 TraesCS4A01G115500 chr5B 402872054 402873346 1292 True 2115.00 2115 96.210 60 1351 1 chr5B.!!$R1 1291
7 TraesCS4A01G115500 chr2A 7825110 7826403 1293 False 2106.00 2106 96.059 60 1352 1 chr2A.!!$F1 1292
8 TraesCS4A01G115500 chr6A 539671757 539673048 1291 False 2104.00 2104 96.056 60 1351 1 chr6A.!!$F1 1291
9 TraesCS4A01G115500 chr7B 217620507 217621799 1292 True 2093.00 2093 95.901 60 1351 1 chr7B.!!$R1 1291
10 TraesCS4A01G115500 chr4D 329317356 329317885 529 True 337.65 604 91.058 4 1857 2 chr4D.!!$R1 1853

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
384 386 0.038251 GATGAGACGGATATGGCGCA 60.038 55.0 10.83 0.0 0.0 6.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2194 2202 0.02577 CGCTGTAAATTGTACCGGCG 59.974 55.0 0.0 0.0 34.51 6.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 9.090692 GTGCCTAGTTTTAGTTACGAAATATCA 57.909 33.333 0.00 0.00 0.00 2.15
46 47 8.952278 AGTTTTAGTTACGAAATATCAATGGCA 58.048 29.630 0.00 0.00 0.00 4.92
47 48 9.562583 GTTTTAGTTACGAAATATCAATGGCAA 57.437 29.630 0.00 0.00 0.00 4.52
49 50 9.944663 TTTAGTTACGAAATATCAATGGCAATC 57.055 29.630 0.00 0.00 0.00 2.67
50 51 6.970484 AGTTACGAAATATCAATGGCAATCC 58.030 36.000 0.00 0.00 0.00 3.01
51 52 4.853924 ACGAAATATCAATGGCAATCCC 57.146 40.909 0.00 0.00 0.00 3.85
52 53 4.473444 ACGAAATATCAATGGCAATCCCT 58.527 39.130 0.00 0.00 0.00 4.20
53 54 4.895297 ACGAAATATCAATGGCAATCCCTT 59.105 37.500 0.00 0.00 0.00 3.95
54 55 5.221303 ACGAAATATCAATGGCAATCCCTTG 60.221 40.000 0.00 0.00 38.75 3.61
136 137 0.318120 CGCTTTCCACTTGGGCAATT 59.682 50.000 0.00 0.00 36.21 2.32
178 179 2.894765 TCGTAACTTCATCTGGTGTGGA 59.105 45.455 0.00 0.00 0.00 4.02
220 221 1.407437 GGCGGACATTCTCTGGTCAAT 60.407 52.381 0.00 0.00 35.74 2.57
223 224 3.599343 CGGACATTCTCTGGTCAATTGA 58.401 45.455 3.38 3.38 35.74 2.57
384 386 0.038251 GATGAGACGGATATGGCGCA 60.038 55.000 10.83 0.00 0.00 6.09
385 387 0.610174 ATGAGACGGATATGGCGCAT 59.390 50.000 10.83 3.40 0.00 4.73
420 422 1.002069 ACCATCTCCTTGGGCAATGA 58.998 50.000 0.00 0.00 41.35 2.57
612 614 1.098050 GAGTTCATTGCCCTCGCATT 58.902 50.000 0.00 0.00 46.67 3.56
744 747 0.556258 CCTATCCCAGGTTTTCCCCC 59.444 60.000 0.00 0.00 39.91 5.40
838 841 4.529219 CGGCCGACATGCTAGCCA 62.529 66.667 24.07 0.24 46.08 4.75
840 843 1.963338 GGCCGACATGCTAGCCATC 60.963 63.158 13.29 6.09 45.07 3.51
1147 1151 2.049063 GAACTCGCCTCACGCACT 60.049 61.111 0.00 0.00 43.23 4.40
1276 1280 2.547218 CCGGTTTCTCTCAGAAAACCGA 60.547 50.000 32.95 6.09 46.42 4.69
1324 1328 7.928873 ACCCTCCTTCTTATATGAAAAGACAA 58.071 34.615 2.99 0.00 32.81 3.18
1450 1454 2.125773 TTCGTCTGGAGACCTAGTCC 57.874 55.000 1.15 0.00 41.86 3.85
1458 1462 1.026584 GAGACCTAGTCCTCGAAGGC 58.973 60.000 0.00 0.00 34.61 4.35
1473 1477 2.031163 GGCATAGCTAGTGGCCCG 59.969 66.667 18.42 0.00 43.05 6.13
1498 1502 0.792640 CACTCGTCACTTGCACATCC 59.207 55.000 0.00 0.00 0.00 3.51
1499 1503 0.392706 ACTCGTCACTTGCACATCCA 59.607 50.000 0.00 0.00 0.00 3.41
1511 1515 1.963515 GCACATCCAGGGAACAGTTTT 59.036 47.619 0.00 0.00 0.00 2.43
1521 1525 1.401539 GGAACAGTTTTCATGCTCGCC 60.402 52.381 0.00 0.00 0.00 5.54
1522 1526 0.598065 AACAGTTTTCATGCTCGCCC 59.402 50.000 0.00 0.00 0.00 6.13
1564 1568 4.395519 ACGCAGTGCTATTGCCAA 57.604 50.000 14.33 0.00 42.51 4.52
1568 1572 1.135315 CGCAGTGCTATTGCCAATTGT 60.135 47.619 14.33 0.00 38.31 2.71
1632 1636 0.107165 CCCATCGTTTCCTTCCTCCC 60.107 60.000 0.00 0.00 0.00 4.30
1641 1645 1.192146 TCCTTCCTCCCCTGTTGTCG 61.192 60.000 0.00 0.00 0.00 4.35
1651 1655 2.325761 CCCTGTTGTCGAGTACTTTCG 58.674 52.381 0.00 0.00 41.79 3.46
1658 1662 5.156355 GTTGTCGAGTACTTTCGGTGATTA 58.844 41.667 0.00 0.00 40.83 1.75
1660 1664 5.771469 TGTCGAGTACTTTCGGTGATTAAA 58.229 37.500 0.00 0.00 40.83 1.52
1661 1665 6.392354 TGTCGAGTACTTTCGGTGATTAAAT 58.608 36.000 0.00 0.00 40.83 1.40
1666 1670 6.478129 AGTACTTTCGGTGATTAAATCCCAA 58.522 36.000 0.00 0.00 0.00 4.12
1671 1675 3.055675 TCGGTGATTAAATCCCAACTCGT 60.056 43.478 0.00 0.00 0.00 4.18
1682 1686 2.009774 CCCAACTCGTGCAAGATTAGG 58.990 52.381 1.88 5.22 0.00 2.69
1688 1692 5.358298 ACTCGTGCAAGATTAGGTTTTTC 57.642 39.130 1.88 0.00 0.00 2.29
1690 1694 5.179555 ACTCGTGCAAGATTAGGTTTTTCTC 59.820 40.000 1.88 0.00 0.00 2.87
1691 1695 4.454504 TCGTGCAAGATTAGGTTTTTCTCC 59.545 41.667 0.00 0.00 0.00 3.71
1692 1696 4.669197 CGTGCAAGATTAGGTTTTTCTCCG 60.669 45.833 0.00 0.00 0.00 4.63
1695 1699 5.533154 TGCAAGATTAGGTTTTTCTCCGAAA 59.467 36.000 0.00 0.00 0.00 3.46
1696 1700 6.039941 TGCAAGATTAGGTTTTTCTCCGAAAA 59.960 34.615 0.00 0.00 0.00 2.29
1697 1701 6.582672 GCAAGATTAGGTTTTTCTCCGAAAAG 59.417 38.462 2.53 0.00 0.00 2.27
1709 1713 3.570912 TCCGAAAAGGATGATAACCCC 57.429 47.619 0.00 0.00 45.98 4.95
1741 1745 4.084118 GCATCGAGGCAAGATTAGATGTTC 60.084 45.833 18.55 0.00 38.11 3.18
1742 1746 5.295950 CATCGAGGCAAGATTAGATGTTCT 58.704 41.667 0.00 0.00 33.05 3.01
1743 1747 4.686972 TCGAGGCAAGATTAGATGTTCTG 58.313 43.478 0.00 0.00 0.00 3.02
1744 1748 4.160439 TCGAGGCAAGATTAGATGTTCTGT 59.840 41.667 0.00 0.00 0.00 3.41
1745 1749 4.505922 CGAGGCAAGATTAGATGTTCTGTC 59.494 45.833 0.00 0.00 0.00 3.51
1746 1750 4.437239 AGGCAAGATTAGATGTTCTGTCG 58.563 43.478 0.00 0.00 0.00 4.35
1747 1751 4.160439 AGGCAAGATTAGATGTTCTGTCGA 59.840 41.667 0.00 0.00 0.00 4.20
1748 1752 4.870426 GGCAAGATTAGATGTTCTGTCGAA 59.130 41.667 0.00 0.00 0.00 3.71
1749 1753 5.525378 GGCAAGATTAGATGTTCTGTCGAAT 59.475 40.000 0.00 0.00 0.00 3.34
1750 1754 6.037610 GGCAAGATTAGATGTTCTGTCGAATT 59.962 38.462 0.00 0.00 0.00 2.17
1751 1755 7.414540 GGCAAGATTAGATGTTCTGTCGAATTT 60.415 37.037 0.00 0.00 0.00 1.82
1761 1765 6.964908 TGTTCTGTCGAATTTTTCAATAGCA 58.035 32.000 0.00 0.00 0.00 3.49
1765 1769 4.217334 TGTCGAATTTTTCAATAGCAGGCA 59.783 37.500 0.00 0.00 0.00 4.75
1781 1785 0.570734 GGCACGACATCGATGTTACG 59.429 55.000 30.46 29.07 41.95 3.18
1834 1839 4.764823 TGAAAATTAACATTCCAGCGTCCT 59.235 37.500 0.93 0.00 0.00 3.85
1835 1840 5.941058 TGAAAATTAACATTCCAGCGTCCTA 59.059 36.000 0.93 0.00 0.00 2.94
1866 1874 3.849951 CGATAGCGTGGGGGTGCT 61.850 66.667 0.00 0.00 45.04 4.40
1867 1875 2.590092 GATAGCGTGGGGGTGCTT 59.410 61.111 0.00 0.00 42.48 3.91
1868 1876 1.819632 GATAGCGTGGGGGTGCTTG 60.820 63.158 0.00 0.00 42.48 4.01
1869 1877 2.252072 GATAGCGTGGGGGTGCTTGA 62.252 60.000 0.00 0.00 42.48 3.02
1870 1878 1.847798 ATAGCGTGGGGGTGCTTGAA 61.848 55.000 0.00 0.00 42.48 2.69
1871 1879 2.741486 TAGCGTGGGGGTGCTTGAAC 62.741 60.000 0.00 0.00 42.48 3.18
1872 1880 2.983592 CGTGGGGGTGCTTGAACC 60.984 66.667 0.00 0.00 39.71 3.62
1873 1881 2.983592 GTGGGGGTGCTTGAACCG 60.984 66.667 0.00 0.00 41.52 4.44
1874 1882 3.172106 TGGGGGTGCTTGAACCGA 61.172 61.111 0.00 0.00 41.52 4.69
1875 1883 2.114411 GGGGGTGCTTGAACCGAA 59.886 61.111 0.00 0.00 41.52 4.30
1876 1884 2.265904 GGGGGTGCTTGAACCGAAC 61.266 63.158 0.00 0.00 41.52 3.95
1877 1885 1.228154 GGGGTGCTTGAACCGAACT 60.228 57.895 0.00 0.00 41.52 3.01
1878 1886 1.515521 GGGGTGCTTGAACCGAACTG 61.516 60.000 0.00 0.00 41.52 3.16
1879 1887 1.282875 GGTGCTTGAACCGAACTGC 59.717 57.895 0.00 0.00 0.00 4.40
1880 1888 1.166531 GGTGCTTGAACCGAACTGCT 61.167 55.000 0.00 0.00 0.00 4.24
1881 1889 0.040958 GTGCTTGAACCGAACTGCTG 60.041 55.000 0.00 0.00 0.00 4.41
1882 1890 0.463654 TGCTTGAACCGAACTGCTGT 60.464 50.000 0.00 0.00 0.00 4.40
1883 1891 0.663153 GCTTGAACCGAACTGCTGTT 59.337 50.000 8.91 8.91 39.42 3.16
1884 1892 1.065551 GCTTGAACCGAACTGCTGTTT 59.934 47.619 10.54 0.00 36.39 2.83
1885 1893 2.854805 GCTTGAACCGAACTGCTGTTTC 60.855 50.000 10.54 4.86 36.39 2.78
1886 1894 0.934496 TGAACCGAACTGCTGTTTCG 59.066 50.000 10.54 13.85 36.39 3.46
1887 1895 0.234884 GAACCGAACTGCTGTTTCGG 59.765 55.000 28.33 28.33 44.48 4.30
1888 1896 0.179067 AACCGAACTGCTGTTTCGGA 60.179 50.000 32.59 0.00 43.13 4.55
1889 1897 0.600255 ACCGAACTGCTGTTTCGGAG 60.600 55.000 32.59 19.04 43.13 4.63
1890 1898 1.493311 CGAACTGCTGTTTCGGAGC 59.507 57.895 10.54 0.00 36.39 4.70
1891 1899 0.946221 CGAACTGCTGTTTCGGAGCT 60.946 55.000 10.54 0.00 37.35 4.09
1892 1900 1.230324 GAACTGCTGTTTCGGAGCTT 58.770 50.000 10.54 0.00 37.35 3.74
1893 1901 1.604278 GAACTGCTGTTTCGGAGCTTT 59.396 47.619 10.54 0.00 37.35 3.51
1894 1902 0.947244 ACTGCTGTTTCGGAGCTTTG 59.053 50.000 0.00 0.00 37.35 2.77
1895 1903 0.386478 CTGCTGTTTCGGAGCTTTGC 60.386 55.000 0.00 0.00 37.35 3.68
1896 1904 1.081175 GCTGTTTCGGAGCTTTGCC 60.081 57.895 0.00 0.00 33.37 4.52
1897 1905 1.518903 GCTGTTTCGGAGCTTTGCCT 61.519 55.000 0.00 0.00 33.37 4.75
1898 1906 0.954452 CTGTTTCGGAGCTTTGCCTT 59.046 50.000 0.00 0.00 0.00 4.35
1899 1907 2.151202 CTGTTTCGGAGCTTTGCCTTA 58.849 47.619 0.00 0.00 0.00 2.69
1900 1908 2.151202 TGTTTCGGAGCTTTGCCTTAG 58.849 47.619 0.00 0.00 0.00 2.18
1901 1909 1.135660 GTTTCGGAGCTTTGCCTTAGC 60.136 52.381 0.00 0.00 38.93 3.09
1902 1910 0.676782 TTCGGAGCTTTGCCTTAGCC 60.677 55.000 0.00 0.00 39.47 3.93
1903 1911 1.078143 CGGAGCTTTGCCTTAGCCT 60.078 57.895 0.00 0.00 39.47 4.58
1904 1912 0.678048 CGGAGCTTTGCCTTAGCCTT 60.678 55.000 0.00 0.00 39.47 4.35
1905 1913 1.406887 CGGAGCTTTGCCTTAGCCTTA 60.407 52.381 0.00 0.00 39.47 2.69
1906 1914 2.293170 GGAGCTTTGCCTTAGCCTTAG 58.707 52.381 0.00 0.00 39.47 2.18
1907 1915 1.673400 GAGCTTTGCCTTAGCCTTAGC 59.327 52.381 0.00 0.00 39.47 3.09
1908 1916 0.741326 GCTTTGCCTTAGCCTTAGCC 59.259 55.000 0.00 0.00 41.25 3.93
1909 1917 1.683319 GCTTTGCCTTAGCCTTAGCCT 60.683 52.381 0.00 0.00 41.25 4.58
1910 1918 2.019984 CTTTGCCTTAGCCTTAGCCTG 58.980 52.381 0.00 0.00 41.25 4.85
1911 1919 1.285280 TTGCCTTAGCCTTAGCCTGA 58.715 50.000 0.00 0.00 41.25 3.86
1912 1920 1.285280 TGCCTTAGCCTTAGCCTGAA 58.715 50.000 0.00 0.00 41.25 3.02
1913 1921 1.633432 TGCCTTAGCCTTAGCCTGAAA 59.367 47.619 0.00 0.00 41.25 2.69
1914 1922 2.293170 GCCTTAGCCTTAGCCTGAAAG 58.707 52.381 0.00 0.00 41.25 2.62
1928 1936 3.157932 CTGAAAGGAGGACGATGAGAC 57.842 52.381 0.00 0.00 0.00 3.36
1929 1937 1.472878 TGAAAGGAGGACGATGAGACG 59.527 52.381 0.00 0.00 39.31 4.18
1930 1938 1.743958 GAAAGGAGGACGATGAGACGA 59.256 52.381 0.00 0.00 37.03 4.20
1931 1939 1.096416 AAGGAGGACGATGAGACGAC 58.904 55.000 0.00 0.00 37.03 4.34
1932 1940 0.748729 AGGAGGACGATGAGACGACC 60.749 60.000 0.00 0.00 45.13 4.79
1933 1941 1.030488 GGAGGACGATGAGACGACCA 61.030 60.000 11.22 0.00 46.57 4.02
1934 1942 0.809385 GAGGACGATGAGACGACCAA 59.191 55.000 11.22 0.00 46.57 3.67
1935 1943 0.811915 AGGACGATGAGACGACCAAG 59.188 55.000 11.22 0.00 46.57 3.61
1936 1944 0.526662 GGACGATGAGACGACCAAGT 59.473 55.000 0.00 0.00 44.46 3.16
1937 1945 1.741706 GGACGATGAGACGACCAAGTA 59.258 52.381 0.00 0.00 44.46 2.24
1938 1946 2.477525 GGACGATGAGACGACCAAGTAC 60.478 54.545 0.00 0.00 44.46 2.73
1939 1947 1.129998 ACGATGAGACGACCAAGTACG 59.870 52.381 0.00 0.00 37.03 3.67
1940 1948 1.129998 CGATGAGACGACCAAGTACGT 59.870 52.381 0.00 0.00 45.32 3.57
1941 1949 2.349580 CGATGAGACGACCAAGTACGTA 59.650 50.000 0.00 0.00 42.74 3.57
1942 1950 3.678662 GATGAGACGACCAAGTACGTAC 58.321 50.000 18.10 18.10 42.74 3.67
1943 1951 2.493035 TGAGACGACCAAGTACGTACA 58.507 47.619 26.55 0.00 42.74 2.90
1944 1952 3.076621 TGAGACGACCAAGTACGTACAT 58.923 45.455 26.55 13.27 42.74 2.29
1945 1953 3.125829 TGAGACGACCAAGTACGTACATC 59.874 47.826 26.55 16.31 42.74 3.06
1946 1954 2.421424 AGACGACCAAGTACGTACATCC 59.579 50.000 26.55 10.23 42.74 3.51
1947 1955 2.161855 ACGACCAAGTACGTACATCCA 58.838 47.619 26.55 0.00 40.92 3.41
1948 1956 2.756760 ACGACCAAGTACGTACATCCAT 59.243 45.455 26.55 8.65 40.92 3.41
1949 1957 3.194116 ACGACCAAGTACGTACATCCATT 59.806 43.478 26.55 9.69 40.92 3.16
1950 1958 4.398988 ACGACCAAGTACGTACATCCATTA 59.601 41.667 26.55 0.00 40.92 1.90
1951 1959 5.068198 ACGACCAAGTACGTACATCCATTAT 59.932 40.000 26.55 1.16 40.92 1.28
1952 1960 5.981315 CGACCAAGTACGTACATCCATTATT 59.019 40.000 26.55 7.55 0.00 1.40
1953 1961 6.477688 CGACCAAGTACGTACATCCATTATTT 59.522 38.462 26.55 6.84 0.00 1.40
1954 1962 7.648908 CGACCAAGTACGTACATCCATTATTTA 59.351 37.037 26.55 0.00 0.00 1.40
1955 1963 9.485206 GACCAAGTACGTACATCCATTATTTAT 57.515 33.333 26.55 0.00 0.00 1.40
1956 1964 9.485206 ACCAAGTACGTACATCCATTATTTATC 57.515 33.333 26.55 0.00 0.00 1.75
1957 1965 8.932791 CCAAGTACGTACATCCATTATTTATCC 58.067 37.037 26.55 0.00 0.00 2.59
1958 1966 8.644619 CAAGTACGTACATCCATTATTTATCCG 58.355 37.037 26.55 0.00 0.00 4.18
1959 1967 6.810182 AGTACGTACATCCATTATTTATCCGC 59.190 38.462 26.55 0.00 0.00 5.54
1960 1968 5.543714 ACGTACATCCATTATTTATCCGCA 58.456 37.500 0.00 0.00 0.00 5.69
1961 1969 5.407387 ACGTACATCCATTATTTATCCGCAC 59.593 40.000 0.00 0.00 0.00 5.34
1962 1970 5.407084 CGTACATCCATTATTTATCCGCACA 59.593 40.000 0.00 0.00 0.00 4.57
1963 1971 6.073494 CGTACATCCATTATTTATCCGCACAA 60.073 38.462 0.00 0.00 0.00 3.33
1964 1972 6.707440 ACATCCATTATTTATCCGCACAAA 57.293 33.333 0.00 0.00 0.00 2.83
1965 1973 6.503524 ACATCCATTATTTATCCGCACAAAC 58.496 36.000 0.00 0.00 0.00 2.93
1966 1974 6.321181 ACATCCATTATTTATCCGCACAAACT 59.679 34.615 0.00 0.00 0.00 2.66
1967 1975 6.130298 TCCATTATTTATCCGCACAAACTG 57.870 37.500 0.00 0.00 0.00 3.16
1968 1976 5.883115 TCCATTATTTATCCGCACAAACTGA 59.117 36.000 0.00 0.00 0.00 3.41
1969 1977 6.545666 TCCATTATTTATCCGCACAAACTGAT 59.454 34.615 0.00 0.00 0.00 2.90
1970 1978 7.068103 TCCATTATTTATCCGCACAAACTGATT 59.932 33.333 0.00 0.00 0.00 2.57
1971 1979 7.706179 CCATTATTTATCCGCACAAACTGATTT 59.294 33.333 0.00 0.00 0.00 2.17
1972 1980 8.745837 CATTATTTATCCGCACAAACTGATTTC 58.254 33.333 0.00 0.00 0.00 2.17
1973 1981 5.697473 TTTATCCGCACAAACTGATTTCA 57.303 34.783 0.00 0.00 0.00 2.69
1974 1982 5.895636 TTATCCGCACAAACTGATTTCAT 57.104 34.783 0.00 0.00 0.00 2.57
1975 1983 4.789012 ATCCGCACAAACTGATTTCATT 57.211 36.364 0.00 0.00 0.00 2.57
1976 1984 4.582701 TCCGCACAAACTGATTTCATTT 57.417 36.364 0.00 0.00 0.00 2.32
1977 1985 4.942852 TCCGCACAAACTGATTTCATTTT 58.057 34.783 0.00 0.00 0.00 1.82
1978 1986 4.744137 TCCGCACAAACTGATTTCATTTTG 59.256 37.500 17.02 17.02 45.86 2.44
1987 1995 8.987729 CAAACTGATTTCATTTTGTTCAAAACG 58.012 29.630 11.99 5.47 39.87 3.60
1988 1996 7.826260 ACTGATTTCATTTTGTTCAAAACGT 57.174 28.000 11.99 0.00 0.00 3.99
1989 1997 8.918961 ACTGATTTCATTTTGTTCAAAACGTA 57.081 26.923 11.99 0.00 0.00 3.57
1990 1998 9.360093 ACTGATTTCATTTTGTTCAAAACGTAA 57.640 25.926 11.99 5.90 0.00 3.18
2000 2008 9.843334 TTTTGTTCAAAACGTAATAAGTTGAGT 57.157 25.926 6.61 0.00 30.43 3.41
2009 2017 9.485206 AAACGTAATAAGTTGAGTATGAACAGT 57.515 29.630 0.00 0.00 33.40 3.55
2046 2054 9.562226 AATGTAGAGCTATATAATTAGGGTGGT 57.438 33.333 0.00 0.00 0.00 4.16
2047 2055 8.967779 TGTAGAGCTATATAATTAGGGTGGTT 57.032 34.615 0.00 0.00 0.00 3.67
2048 2056 9.032624 TGTAGAGCTATATAATTAGGGTGGTTC 57.967 37.037 0.00 0.00 0.00 3.62
2049 2057 9.032624 GTAGAGCTATATAATTAGGGTGGTTCA 57.967 37.037 0.00 0.00 0.00 3.18
2050 2058 7.908453 AGAGCTATATAATTAGGGTGGTTCAC 58.092 38.462 0.00 0.00 0.00 3.18
2051 2059 7.512746 AGAGCTATATAATTAGGGTGGTTCACA 59.487 37.037 0.00 0.00 35.86 3.58
2052 2060 7.680730 AGCTATATAATTAGGGTGGTTCACAG 58.319 38.462 0.00 0.00 35.86 3.66
2053 2061 7.292591 AGCTATATAATTAGGGTGGTTCACAGT 59.707 37.037 0.00 0.00 35.86 3.55
2054 2062 7.937394 GCTATATAATTAGGGTGGTTCACAGTT 59.063 37.037 0.38 0.00 35.86 3.16
2055 2063 9.273016 CTATATAATTAGGGTGGTTCACAGTTG 57.727 37.037 0.38 0.00 35.86 3.16
2056 2064 4.447138 AATTAGGGTGGTTCACAGTTGA 57.553 40.909 0.38 0.00 35.86 3.18
2057 2065 2.922740 TAGGGTGGTTCACAGTTGAC 57.077 50.000 0.38 0.00 35.86 3.18
2058 2066 0.182775 AGGGTGGTTCACAGTTGACC 59.817 55.000 0.38 0.00 35.86 4.02
2059 2067 0.106918 GGGTGGTTCACAGTTGACCA 60.107 55.000 1.32 1.32 35.86 4.02
2060 2068 1.478654 GGGTGGTTCACAGTTGACCAT 60.479 52.381 7.83 0.00 36.18 3.55
2061 2069 2.224670 GGGTGGTTCACAGTTGACCATA 60.225 50.000 7.83 0.00 36.18 2.74
2062 2070 3.561313 GGGTGGTTCACAGTTGACCATAT 60.561 47.826 7.83 0.00 36.18 1.78
2063 2071 4.323945 GGGTGGTTCACAGTTGACCATATA 60.324 45.833 7.83 0.00 36.18 0.86
2064 2072 4.634443 GGTGGTTCACAGTTGACCATATAC 59.366 45.833 7.83 0.00 36.18 1.47
2065 2073 5.242434 GTGGTTCACAGTTGACCATATACA 58.758 41.667 7.83 0.00 36.18 2.29
2066 2074 5.880332 GTGGTTCACAGTTGACCATATACAT 59.120 40.000 7.83 0.00 36.18 2.29
2067 2075 7.045416 GTGGTTCACAGTTGACCATATACATA 58.955 38.462 7.83 0.00 36.18 2.29
2068 2076 7.715249 GTGGTTCACAGTTGACCATATACATAT 59.285 37.037 7.83 0.00 36.18 1.78
2069 2077 8.929487 TGGTTCACAGTTGACCATATACATATA 58.071 33.333 1.32 0.00 31.70 0.86
2070 2078 9.944376 GGTTCACAGTTGACCATATACATATAT 57.056 33.333 0.00 0.00 0.00 0.86
2093 2101 9.807649 ATATAAGAAACCACAAAAATCTGATGC 57.192 29.630 0.00 0.00 0.00 3.91
2094 2102 4.886579 AGAAACCACAAAAATCTGATGCC 58.113 39.130 0.00 0.00 0.00 4.40
2095 2103 4.344679 AGAAACCACAAAAATCTGATGCCA 59.655 37.500 0.00 0.00 0.00 4.92
2096 2104 3.947910 ACCACAAAAATCTGATGCCAG 57.052 42.857 0.00 0.00 41.74 4.85
2097 2105 2.028748 ACCACAAAAATCTGATGCCAGC 60.029 45.455 0.00 0.00 40.20 4.85
2098 2106 2.613691 CACAAAAATCTGATGCCAGCC 58.386 47.619 0.00 0.00 40.20 4.85
2099 2107 2.028839 CACAAAAATCTGATGCCAGCCA 60.029 45.455 0.00 0.00 40.20 4.75
2100 2108 2.028748 ACAAAAATCTGATGCCAGCCAC 60.029 45.455 0.00 0.00 40.20 5.01
2101 2109 1.927487 AAAATCTGATGCCAGCCACA 58.073 45.000 0.00 0.00 40.20 4.17
2102 2110 1.927487 AAATCTGATGCCAGCCACAA 58.073 45.000 0.00 0.00 40.20 3.33
2103 2111 1.471119 AATCTGATGCCAGCCACAAG 58.529 50.000 0.00 0.00 40.20 3.16
2104 2112 0.330604 ATCTGATGCCAGCCACAAGT 59.669 50.000 0.00 0.00 40.20 3.16
2105 2113 0.983467 TCTGATGCCAGCCACAAGTA 59.017 50.000 0.00 0.00 40.20 2.24
2106 2114 1.089920 CTGATGCCAGCCACAAGTAC 58.910 55.000 0.00 0.00 33.07 2.73
2107 2115 0.399833 TGATGCCAGCCACAAGTACA 59.600 50.000 0.00 0.00 0.00 2.90
2108 2116 1.004628 TGATGCCAGCCACAAGTACAT 59.995 47.619 0.00 0.00 0.00 2.29
2109 2117 1.402968 GATGCCAGCCACAAGTACATG 59.597 52.381 0.00 0.00 0.00 3.21
2110 2118 1.243342 TGCCAGCCACAAGTACATGC 61.243 55.000 0.00 0.00 0.00 4.06
2111 2119 1.243342 GCCAGCCACAAGTACATGCA 61.243 55.000 0.00 0.00 0.00 3.96
2112 2120 1.466856 CCAGCCACAAGTACATGCAT 58.533 50.000 0.00 0.00 0.00 3.96
2113 2121 2.642427 CCAGCCACAAGTACATGCATA 58.358 47.619 0.00 0.00 0.00 3.14
2114 2122 2.355756 CCAGCCACAAGTACATGCATAC 59.644 50.000 0.00 0.00 0.00 2.39
2115 2123 3.009026 CAGCCACAAGTACATGCATACA 58.991 45.455 0.00 0.00 0.00 2.29
2116 2124 3.439825 CAGCCACAAGTACATGCATACAA 59.560 43.478 0.00 0.00 0.00 2.41
2117 2125 4.078537 AGCCACAAGTACATGCATACAAA 58.921 39.130 0.00 0.00 0.00 2.83
2118 2126 4.706476 AGCCACAAGTACATGCATACAAAT 59.294 37.500 0.00 0.00 0.00 2.32
2119 2127 5.885352 AGCCACAAGTACATGCATACAAATA 59.115 36.000 0.00 0.00 0.00 1.40
2120 2128 5.971202 GCCACAAGTACATGCATACAAATAC 59.029 40.000 0.00 0.00 0.00 1.89
2121 2129 6.404184 GCCACAAGTACATGCATACAAATACA 60.404 38.462 0.00 0.00 0.00 2.29
2122 2130 7.681782 GCCACAAGTACATGCATACAAATACAT 60.682 37.037 0.00 0.00 0.00 2.29
2123 2131 8.835439 CCACAAGTACATGCATACAAATACATA 58.165 33.333 0.00 0.00 0.00 2.29
2128 2136 9.950680 AGTACATGCATACAAATACATAAAAGC 57.049 29.630 0.00 0.00 0.00 3.51
2129 2137 9.950680 GTACATGCATACAAATACATAAAAGCT 57.049 29.630 0.00 0.00 0.00 3.74
2131 2139 8.685427 ACATGCATACAAATACATAAAAGCTCA 58.315 29.630 0.00 0.00 0.00 4.26
2132 2140 9.687210 CATGCATACAAATACATAAAAGCTCAT 57.313 29.630 0.00 0.00 0.00 2.90
2133 2141 9.687210 ATGCATACAAATACATAAAAGCTCATG 57.313 29.630 0.00 0.00 0.00 3.07
2134 2142 7.648908 TGCATACAAATACATAAAAGCTCATGC 59.351 33.333 0.00 0.00 40.05 4.06
2135 2143 7.648908 GCATACAAATACATAAAAGCTCATGCA 59.351 33.333 0.00 0.00 42.74 3.96
2136 2144 9.687210 CATACAAATACATAAAAGCTCATGCAT 57.313 29.630 0.00 0.00 42.74 3.96
2139 2147 9.687210 ACAAATACATAAAAGCTCATGCATATG 57.313 29.630 0.00 0.00 42.74 1.78
2140 2148 9.135843 CAAATACATAAAAGCTCATGCATATGG 57.864 33.333 0.00 0.00 42.74 2.74
2141 2149 8.640063 AATACATAAAAGCTCATGCATATGGA 57.360 30.769 0.00 1.06 42.74 3.41
2142 2150 6.323203 ACATAAAAGCTCATGCATATGGAC 57.677 37.500 0.00 0.00 42.74 4.02
2143 2151 3.976793 AAAAGCTCATGCATATGGACG 57.023 42.857 0.00 0.00 42.74 4.79
2144 2152 2.627515 AAGCTCATGCATATGGACGT 57.372 45.000 0.00 0.00 42.74 4.34
2145 2153 2.160822 AGCTCATGCATATGGACGTC 57.839 50.000 7.13 7.13 42.74 4.34
2146 2154 0.786581 GCTCATGCATATGGACGTCG 59.213 55.000 9.92 0.00 39.41 5.12
2147 2155 1.602920 GCTCATGCATATGGACGTCGA 60.603 52.381 9.92 5.99 39.41 4.20
2148 2156 2.054363 CTCATGCATATGGACGTCGAC 58.946 52.381 9.92 5.18 34.97 4.20
2149 2157 1.681264 TCATGCATATGGACGTCGACT 59.319 47.619 14.70 0.10 34.97 4.18
2150 2158 2.054363 CATGCATATGGACGTCGACTC 58.946 52.381 14.70 9.94 0.00 3.36
2151 2159 0.384309 TGCATATGGACGTCGACTCC 59.616 55.000 20.62 20.62 0.00 3.85
2152 2160 0.660595 GCATATGGACGTCGACTCCG 60.661 60.000 21.41 10.16 37.07 4.63
2153 2161 0.942252 CATATGGACGTCGACTCCGA 59.058 55.000 21.41 15.35 43.35 4.55
2169 2177 1.871772 CGAAAGGCAAGTGAGCTGG 59.128 57.895 0.00 0.00 34.17 4.85
2170 2178 0.886490 CGAAAGGCAAGTGAGCTGGT 60.886 55.000 0.00 0.00 34.17 4.00
2171 2179 1.322442 GAAAGGCAAGTGAGCTGGTT 58.678 50.000 0.00 0.00 34.17 3.67
2172 2180 1.268079 GAAAGGCAAGTGAGCTGGTTC 59.732 52.381 0.00 0.00 34.17 3.62
2173 2181 0.886490 AAGGCAAGTGAGCTGGTTCG 60.886 55.000 0.00 0.00 34.17 3.95
2174 2182 1.598130 GGCAAGTGAGCTGGTTCGT 60.598 57.895 0.00 0.00 34.17 3.85
2175 2183 1.571460 GCAAGTGAGCTGGTTCGTG 59.429 57.895 0.00 0.00 0.00 4.35
2176 2184 0.880278 GCAAGTGAGCTGGTTCGTGA 60.880 55.000 0.00 0.00 0.00 4.35
2177 2185 1.143305 CAAGTGAGCTGGTTCGTGAG 58.857 55.000 0.00 0.00 0.00 3.51
2178 2186 0.753262 AAGTGAGCTGGTTCGTGAGT 59.247 50.000 0.00 0.00 0.00 3.41
2179 2187 1.617322 AGTGAGCTGGTTCGTGAGTA 58.383 50.000 0.00 0.00 0.00 2.59
2180 2188 2.171840 AGTGAGCTGGTTCGTGAGTAT 58.828 47.619 0.00 0.00 0.00 2.12
2181 2189 2.164624 AGTGAGCTGGTTCGTGAGTATC 59.835 50.000 0.00 0.00 0.00 2.24
2182 2190 1.132453 TGAGCTGGTTCGTGAGTATCG 59.868 52.381 0.00 0.00 38.61 2.92
2183 2191 0.179134 AGCTGGTTCGTGAGTATCGC 60.179 55.000 0.00 0.00 43.58 4.58
2184 2192 0.179134 GCTGGTTCGTGAGTATCGCT 60.179 55.000 0.00 0.00 45.19 4.93
2185 2193 1.736032 GCTGGTTCGTGAGTATCGCTT 60.736 52.381 0.00 0.00 45.19 4.68
2186 2194 2.607187 CTGGTTCGTGAGTATCGCTTT 58.393 47.619 0.00 0.00 45.19 3.51
2187 2195 2.993899 CTGGTTCGTGAGTATCGCTTTT 59.006 45.455 0.00 0.00 45.19 2.27
2188 2196 2.991190 TGGTTCGTGAGTATCGCTTTTC 59.009 45.455 0.00 0.00 45.19 2.29
2189 2197 2.347755 GGTTCGTGAGTATCGCTTTTCC 59.652 50.000 0.00 0.00 45.19 3.13
2190 2198 1.904144 TCGTGAGTATCGCTTTTCCG 58.096 50.000 0.00 0.00 45.19 4.30
2191 2199 0.921347 CGTGAGTATCGCTTTTCCGG 59.079 55.000 0.00 0.00 45.19 5.14
2192 2200 0.651031 GTGAGTATCGCTTTTCCGGC 59.349 55.000 0.00 0.00 43.69 6.13
2193 2201 0.535335 TGAGTATCGCTTTTCCGGCT 59.465 50.000 0.00 0.00 38.61 5.52
2194 2202 1.209998 GAGTATCGCTTTTCCGGCTC 58.790 55.000 0.00 0.00 0.00 4.70
2195 2203 0.527817 AGTATCGCTTTTCCGGCTCG 60.528 55.000 0.00 0.00 0.00 5.03
2196 2204 1.881252 TATCGCTTTTCCGGCTCGC 60.881 57.895 0.00 0.00 0.00 5.03
2207 2215 3.899395 GGCTCGCCGGTACAATTT 58.101 55.556 1.90 0.00 0.00 1.82
2208 2216 3.068574 GGCTCGCCGGTACAATTTA 57.931 52.632 1.90 0.00 0.00 1.40
2209 2217 0.654160 GGCTCGCCGGTACAATTTAC 59.346 55.000 1.90 0.00 0.00 2.01
2210 2218 1.361793 GCTCGCCGGTACAATTTACA 58.638 50.000 1.90 0.00 0.00 2.41
2211 2219 1.326548 GCTCGCCGGTACAATTTACAG 59.673 52.381 1.90 0.00 0.00 2.74
2212 2220 1.326548 CTCGCCGGTACAATTTACAGC 59.673 52.381 1.90 0.00 0.00 4.40
2213 2221 0.025770 CGCCGGTACAATTTACAGCG 59.974 55.000 1.90 13.97 36.16 5.18
2214 2222 0.247934 GCCGGTACAATTTACAGCGC 60.248 55.000 1.90 0.00 32.16 5.92
2215 2223 0.375803 CCGGTACAATTTACAGCGCC 59.624 55.000 2.29 0.00 32.16 6.53
2216 2224 1.365699 CGGTACAATTTACAGCGCCT 58.634 50.000 2.29 0.00 0.00 5.52
2217 2225 2.542597 CGGTACAATTTACAGCGCCTA 58.457 47.619 2.29 0.00 0.00 3.93
2218 2226 2.931325 CGGTACAATTTACAGCGCCTAA 59.069 45.455 2.29 0.00 0.00 2.69
2219 2227 3.558418 CGGTACAATTTACAGCGCCTAAT 59.442 43.478 2.29 0.00 0.00 1.73
2220 2228 4.746115 CGGTACAATTTACAGCGCCTAATA 59.254 41.667 2.29 0.00 0.00 0.98
2221 2229 5.234757 CGGTACAATTTACAGCGCCTAATAA 59.765 40.000 2.29 0.00 0.00 1.40
2222 2230 6.073440 CGGTACAATTTACAGCGCCTAATAAT 60.073 38.462 2.29 0.00 0.00 1.28
2223 2231 7.519328 CGGTACAATTTACAGCGCCTAATAATT 60.519 37.037 2.29 1.38 0.00 1.40
2224 2232 7.801783 GGTACAATTTACAGCGCCTAATAATTC 59.198 37.037 2.29 0.00 0.00 2.17
2225 2233 7.328277 ACAATTTACAGCGCCTAATAATTCA 57.672 32.000 2.29 0.00 0.00 2.57
2226 2234 7.417612 ACAATTTACAGCGCCTAATAATTCAG 58.582 34.615 2.29 0.00 0.00 3.02
2227 2235 7.282224 ACAATTTACAGCGCCTAATAATTCAGA 59.718 33.333 2.29 0.00 0.00 3.27
2228 2236 7.986085 ATTTACAGCGCCTAATAATTCAGAT 57.014 32.000 2.29 0.00 0.00 2.90
2229 2237 9.502091 AATTTACAGCGCCTAATAATTCAGATA 57.498 29.630 2.29 0.00 0.00 1.98
2230 2238 8.534333 TTTACAGCGCCTAATAATTCAGATAG 57.466 34.615 2.29 0.00 0.00 2.08
2231 2239 5.482908 ACAGCGCCTAATAATTCAGATAGG 58.517 41.667 2.29 0.00 38.35 2.57
2232 2240 5.012148 ACAGCGCCTAATAATTCAGATAGGT 59.988 40.000 2.29 0.00 37.75 3.08
2233 2241 6.210784 ACAGCGCCTAATAATTCAGATAGGTA 59.789 38.462 2.29 0.00 37.75 3.08
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.980036 ACTTTGCAAGGGATTGCCATT 59.020 42.857 13.65 0.00 46.82 3.16
42 43 0.968405 GACTTTGCAAGGGATTGCCA 59.032 50.000 13.65 0.00 46.82 4.92
45 46 1.821136 GGGAGACTTTGCAAGGGATTG 59.179 52.381 13.65 0.00 0.00 2.67
46 47 1.713078 AGGGAGACTTTGCAAGGGATT 59.287 47.619 13.65 0.00 0.00 3.01
47 48 1.376649 AGGGAGACTTTGCAAGGGAT 58.623 50.000 13.65 0.27 0.00 3.85
48 49 1.149101 AAGGGAGACTTTGCAAGGGA 58.851 50.000 13.65 0.00 35.35 4.20
49 50 1.251251 CAAGGGAGACTTTGCAAGGG 58.749 55.000 13.65 6.72 40.75 3.95
56 57 2.587522 GGACTTTGCAAGGGAGACTTT 58.412 47.619 13.65 0.00 37.29 2.66
57 58 1.543429 CGGACTTTGCAAGGGAGACTT 60.543 52.381 13.65 0.00 41.00 3.01
58 59 0.035458 CGGACTTTGCAAGGGAGACT 59.965 55.000 13.65 0.00 0.00 3.24
122 123 2.517959 CTTCTGAATTGCCCAAGTGGA 58.482 47.619 0.00 0.00 37.39 4.02
136 137 4.095632 CGAGTGATCTTACTGAGCTTCTGA 59.904 45.833 0.00 0.00 31.32 3.27
178 179 2.361438 AGACGTGTTTTCCGAGTCTTCT 59.639 45.455 0.00 0.00 38.86 2.85
220 221 0.884704 GCCGGCAGACAGTCTTTCAA 60.885 55.000 24.80 0.00 0.00 2.69
223 224 1.192146 TAGGCCGGCAGACAGTCTTT 61.192 55.000 30.85 2.29 0.00 2.52
384 386 1.992557 TGGTGGTAGAAGCCCTGAAAT 59.007 47.619 0.00 0.00 0.00 2.17
385 387 1.440618 TGGTGGTAGAAGCCCTGAAA 58.559 50.000 0.00 0.00 0.00 2.69
420 422 4.878397 CGTGCCAGAATAAGGATTTTCTCT 59.122 41.667 0.00 0.00 29.85 3.10
1071 1075 2.354704 CCAGATGGTGTAAAGGAAGCGA 60.355 50.000 0.00 0.00 0.00 4.93
1276 1280 9.281371 GGGTAAAGTTTATGTACAAGAGAGTTT 57.719 33.333 0.00 4.90 0.00 2.66
1300 1304 8.844244 CATTGTCTTTTCATATAAGAAGGAGGG 58.156 37.037 0.00 0.00 33.71 4.30
1321 1325 0.598065 GAAACCGGCAGAAGCATTGT 59.402 50.000 0.00 0.00 44.61 2.71
1324 1328 0.036732 TGAGAAACCGGCAGAAGCAT 59.963 50.000 0.00 0.00 44.61 3.79
1354 1358 0.593008 CATGCGGTCGATTGCCATTG 60.593 55.000 9.04 2.01 0.00 2.82
1355 1359 1.727511 CCATGCGGTCGATTGCCATT 61.728 55.000 9.04 0.00 0.00 3.16
1356 1360 2.188829 CCATGCGGTCGATTGCCAT 61.189 57.895 9.04 0.00 0.00 4.40
1357 1361 2.823593 CCATGCGGTCGATTGCCA 60.824 61.111 9.04 0.00 0.00 4.92
1358 1362 4.256090 GCCATGCGGTCGATTGCC 62.256 66.667 9.04 0.00 33.28 4.52
1359 1363 3.507924 TGCCATGCGGTCGATTGC 61.508 61.111 5.02 5.02 33.28 3.56
1360 1364 2.404789 GTGCCATGCGGTCGATTG 59.595 61.111 0.00 0.00 33.28 2.67
1368 1372 1.307355 TGATCAAGTGGTGCCATGCG 61.307 55.000 0.00 0.00 0.00 4.73
1450 1454 1.604185 GCCACTAGCTATGCCTTCGAG 60.604 57.143 0.00 0.00 38.99 4.04
1458 1462 1.301244 CAGCGGGCCACTAGCTATG 60.301 63.158 4.39 0.00 43.05 2.23
1472 1476 1.372251 AAGTGACGAGTGAGCAGCG 60.372 57.895 0.00 0.00 0.00 5.18
1473 1477 1.895280 GCAAGTGACGAGTGAGCAGC 61.895 60.000 0.00 0.00 0.00 5.25
1486 1490 0.883833 GTTCCCTGGATGTGCAAGTG 59.116 55.000 0.00 0.00 0.00 3.16
1498 1502 2.095567 CGAGCATGAAAACTGTTCCCTG 60.096 50.000 0.00 0.00 0.00 4.45
1499 1503 2.154462 CGAGCATGAAAACTGTTCCCT 58.846 47.619 0.00 0.00 0.00 4.20
1511 1515 2.747460 GCAACTGGGCGAGCATGA 60.747 61.111 0.00 0.00 0.00 3.07
1522 1526 3.052082 CGTCCAGGCCAGCAACTG 61.052 66.667 5.01 0.00 34.54 3.16
1533 1537 2.099831 GCGTCGTAGTCCGTCCAG 59.900 66.667 0.00 0.00 37.94 3.86
1547 1551 1.135315 CAATTGGCAATAGCACTGCGT 60.135 47.619 14.05 0.00 44.61 5.24
1564 1568 4.265073 GAAATGTCCTAGCCAGTGACAAT 58.735 43.478 7.34 0.00 41.85 2.71
1597 1601 1.808411 TGGGTCGTCTTCATCAAAGC 58.192 50.000 0.00 0.00 34.76 3.51
1598 1602 2.604914 CGATGGGTCGTCTTCATCAAAG 59.395 50.000 13.12 0.00 42.78 2.77
1632 1636 2.288030 ACCGAAAGTACTCGACAACAGG 60.288 50.000 6.12 0.54 41.44 4.00
1641 1645 6.110707 TGGGATTTAATCACCGAAAGTACTC 58.889 40.000 4.61 0.00 0.00 2.59
1651 1655 3.181500 GCACGAGTTGGGATTTAATCACC 60.181 47.826 4.61 5.30 0.00 4.02
1658 1662 2.270352 TCTTGCACGAGTTGGGATTT 57.730 45.000 0.00 0.00 0.00 2.17
1660 1664 2.496899 AATCTTGCACGAGTTGGGAT 57.503 45.000 0.00 0.00 0.00 3.85
1661 1665 2.354704 CCTAATCTTGCACGAGTTGGGA 60.355 50.000 12.14 0.00 0.00 4.37
1666 1670 5.063880 AGAAAAACCTAATCTTGCACGAGT 58.936 37.500 0.00 0.00 0.00 4.18
1671 1675 4.647611 TCGGAGAAAAACCTAATCTTGCA 58.352 39.130 0.00 0.00 0.00 4.08
1690 1694 2.583143 GGGGGTTATCATCCTTTTCGG 58.417 52.381 0.00 0.00 0.00 4.30
1691 1695 2.218603 CGGGGGTTATCATCCTTTTCG 58.781 52.381 0.00 0.00 0.00 3.46
1692 1696 2.092049 ACCGGGGGTTATCATCCTTTTC 60.092 50.000 6.32 0.00 27.29 2.29
1695 1699 1.137697 GACCGGGGGTTATCATCCTT 58.862 55.000 6.32 0.00 35.25 3.36
1696 1700 0.267960 AGACCGGGGGTTATCATCCT 59.732 55.000 6.32 0.00 35.25 3.24
1697 1701 0.685660 GAGACCGGGGGTTATCATCC 59.314 60.000 6.32 0.00 35.25 3.51
1699 1703 1.424638 CAGAGACCGGGGGTTATCAT 58.575 55.000 6.32 0.00 35.25 2.45
1700 1704 1.335132 GCAGAGACCGGGGGTTATCA 61.335 60.000 6.32 0.00 35.25 2.15
1701 1705 1.335132 TGCAGAGACCGGGGGTTATC 61.335 60.000 6.32 0.00 35.25 1.75
1709 1713 2.415010 CCTCGATGCAGAGACCGG 59.585 66.667 0.00 0.00 40.57 5.28
1741 1745 4.795278 GCCTGCTATTGAAAAATTCGACAG 59.205 41.667 0.00 0.00 0.00 3.51
1742 1746 4.217334 TGCCTGCTATTGAAAAATTCGACA 59.783 37.500 0.00 0.00 0.00 4.35
1743 1747 4.558860 GTGCCTGCTATTGAAAAATTCGAC 59.441 41.667 0.00 0.00 0.00 4.20
1744 1748 4.671508 CGTGCCTGCTATTGAAAAATTCGA 60.672 41.667 0.00 0.00 0.00 3.71
1745 1749 3.543494 CGTGCCTGCTATTGAAAAATTCG 59.457 43.478 0.00 0.00 0.00 3.34
1746 1750 4.558860 GTCGTGCCTGCTATTGAAAAATTC 59.441 41.667 0.00 0.00 0.00 2.17
1747 1751 4.022416 TGTCGTGCCTGCTATTGAAAAATT 60.022 37.500 0.00 0.00 0.00 1.82
1748 1752 3.505680 TGTCGTGCCTGCTATTGAAAAAT 59.494 39.130 0.00 0.00 0.00 1.82
1749 1753 2.881513 TGTCGTGCCTGCTATTGAAAAA 59.118 40.909 0.00 0.00 0.00 1.94
1750 1754 2.499197 TGTCGTGCCTGCTATTGAAAA 58.501 42.857 0.00 0.00 0.00 2.29
1751 1755 2.177394 TGTCGTGCCTGCTATTGAAA 57.823 45.000 0.00 0.00 0.00 2.69
1761 1765 1.797713 CGTAACATCGATGTCGTGCCT 60.798 52.381 30.06 16.39 40.80 4.75
1781 1785 9.472361 CTCAATGTATTTCATTCCAATTGGATC 57.528 33.333 27.53 10.95 43.93 3.36
1791 1795 8.746922 TTTTCAGCACTCAATGTATTTCATTC 57.253 30.769 0.00 0.00 43.93 2.67
1834 1839 2.505405 CTATCGCAGGCCACTACTCTA 58.495 52.381 5.01 0.00 0.00 2.43
1835 1840 1.323412 CTATCGCAGGCCACTACTCT 58.677 55.000 5.01 0.00 0.00 3.24
1857 1865 2.758207 TTCGGTTCAAGCACCCCCA 61.758 57.895 0.00 0.00 32.48 4.96
1858 1866 2.114411 TTCGGTTCAAGCACCCCC 59.886 61.111 0.00 0.00 32.48 5.40
1859 1867 1.228154 AGTTCGGTTCAAGCACCCC 60.228 57.895 0.00 0.00 32.48 4.95
1860 1868 1.949257 CAGTTCGGTTCAAGCACCC 59.051 57.895 0.00 0.00 32.48 4.61
1861 1869 1.166531 AGCAGTTCGGTTCAAGCACC 61.167 55.000 0.00 0.00 0.00 5.01
1862 1870 0.040958 CAGCAGTTCGGTTCAAGCAC 60.041 55.000 0.00 0.00 0.00 4.40
1863 1871 0.463654 ACAGCAGTTCGGTTCAAGCA 60.464 50.000 0.00 0.00 0.00 3.91
1864 1872 0.663153 AACAGCAGTTCGGTTCAAGC 59.337 50.000 0.00 0.00 30.46 4.01
1865 1873 2.599848 CGAAACAGCAGTTCGGTTCAAG 60.600 50.000 8.15 0.00 36.84 3.02
1866 1874 1.329292 CGAAACAGCAGTTCGGTTCAA 59.671 47.619 8.15 0.00 36.84 2.69
1867 1875 0.934496 CGAAACAGCAGTTCGGTTCA 59.066 50.000 8.15 0.00 36.84 3.18
1868 1876 0.234884 CCGAAACAGCAGTTCGGTTC 59.765 55.000 20.95 4.75 40.41 3.62
1869 1877 0.179067 TCCGAAACAGCAGTTCGGTT 60.179 50.000 25.33 0.18 43.07 4.44
1870 1878 0.600255 CTCCGAAACAGCAGTTCGGT 60.600 55.000 25.33 0.52 43.07 4.69
1871 1879 1.901650 GCTCCGAAACAGCAGTTCGG 61.902 60.000 22.42 22.42 43.48 4.30
1872 1880 0.946221 AGCTCCGAAACAGCAGTTCG 60.946 55.000 8.86 8.86 39.56 3.95
1873 1881 1.230324 AAGCTCCGAAACAGCAGTTC 58.770 50.000 0.00 0.00 39.56 3.01
1874 1882 1.334869 CAAAGCTCCGAAACAGCAGTT 59.665 47.619 0.00 0.00 39.56 3.16
1875 1883 0.947244 CAAAGCTCCGAAACAGCAGT 59.053 50.000 0.00 0.00 39.56 4.40
1876 1884 0.386478 GCAAAGCTCCGAAACAGCAG 60.386 55.000 0.00 0.00 39.56 4.24
1877 1885 1.654220 GCAAAGCTCCGAAACAGCA 59.346 52.632 0.00 0.00 39.56 4.41
1878 1886 1.081175 GGCAAAGCTCCGAAACAGC 60.081 57.895 0.00 0.00 37.12 4.40
1879 1887 0.954452 AAGGCAAAGCTCCGAAACAG 59.046 50.000 0.00 0.00 0.00 3.16
1880 1888 2.151202 CTAAGGCAAAGCTCCGAAACA 58.849 47.619 0.00 0.00 0.00 2.83
1881 1889 1.135660 GCTAAGGCAAAGCTCCGAAAC 60.136 52.381 4.06 0.00 37.01 2.78
1882 1890 1.165270 GCTAAGGCAAAGCTCCGAAA 58.835 50.000 4.06 0.00 37.01 3.46
1883 1891 0.676782 GGCTAAGGCAAAGCTCCGAA 60.677 55.000 10.38 0.00 39.97 4.30
1884 1892 1.078426 GGCTAAGGCAAAGCTCCGA 60.078 57.895 10.38 0.00 39.97 4.55
1885 1893 0.678048 AAGGCTAAGGCAAAGCTCCG 60.678 55.000 10.38 0.00 39.97 4.63
1886 1894 2.293170 CTAAGGCTAAGGCAAAGCTCC 58.707 52.381 10.38 0.00 39.97 4.70
1887 1895 1.673400 GCTAAGGCTAAGGCAAAGCTC 59.327 52.381 10.38 2.34 39.97 4.09
1888 1896 1.683319 GGCTAAGGCTAAGGCAAAGCT 60.683 52.381 10.38 0.00 39.97 3.74
1889 1897 0.741326 GGCTAAGGCTAAGGCAAAGC 59.259 55.000 2.74 2.74 40.87 3.51
1890 1898 2.019984 CAGGCTAAGGCTAAGGCAAAG 58.980 52.381 9.09 0.00 41.75 2.77
1891 1899 1.633432 TCAGGCTAAGGCTAAGGCAAA 59.367 47.619 9.09 0.00 41.75 3.68
1892 1900 1.285280 TCAGGCTAAGGCTAAGGCAA 58.715 50.000 9.09 0.00 41.75 4.52
1893 1901 1.285280 TTCAGGCTAAGGCTAAGGCA 58.715 50.000 9.09 0.00 41.75 4.75
1894 1902 2.293170 CTTTCAGGCTAAGGCTAAGGC 58.707 52.381 0.00 0.00 36.44 4.35
1895 1903 2.505819 TCCTTTCAGGCTAAGGCTAAGG 59.494 50.000 10.66 6.64 41.59 2.69
1896 1904 3.432890 CCTCCTTTCAGGCTAAGGCTAAG 60.433 52.174 10.66 4.28 41.59 2.18
1897 1905 2.505819 CCTCCTTTCAGGCTAAGGCTAA 59.494 50.000 10.66 0.00 41.59 3.09
1898 1906 2.119495 CCTCCTTTCAGGCTAAGGCTA 58.881 52.381 10.66 0.00 41.59 3.93
1899 1907 0.915364 CCTCCTTTCAGGCTAAGGCT 59.085 55.000 10.66 0.00 41.59 4.58
1900 1908 0.912486 TCCTCCTTTCAGGCTAAGGC 59.088 55.000 10.66 0.00 41.59 4.35
1901 1909 1.134670 CGTCCTCCTTTCAGGCTAAGG 60.135 57.143 9.42 9.42 42.89 2.69
1902 1910 1.825474 TCGTCCTCCTTTCAGGCTAAG 59.175 52.381 0.00 0.00 34.61 2.18
1903 1911 1.933021 TCGTCCTCCTTTCAGGCTAA 58.067 50.000 0.00 0.00 34.61 3.09
1904 1912 1.757118 CATCGTCCTCCTTTCAGGCTA 59.243 52.381 0.00 0.00 34.61 3.93
1905 1913 0.539051 CATCGTCCTCCTTTCAGGCT 59.461 55.000 0.00 0.00 34.61 4.58
1906 1914 0.537188 TCATCGTCCTCCTTTCAGGC 59.463 55.000 0.00 0.00 34.61 4.85
1907 1915 2.103373 TCTCATCGTCCTCCTTTCAGG 58.897 52.381 0.00 0.00 36.46 3.86
1908 1916 2.478709 CGTCTCATCGTCCTCCTTTCAG 60.479 54.545 0.00 0.00 0.00 3.02
1909 1917 1.472878 CGTCTCATCGTCCTCCTTTCA 59.527 52.381 0.00 0.00 0.00 2.69
1910 1918 1.743958 TCGTCTCATCGTCCTCCTTTC 59.256 52.381 0.00 0.00 0.00 2.62
1911 1919 1.473278 GTCGTCTCATCGTCCTCCTTT 59.527 52.381 0.00 0.00 0.00 3.11
1912 1920 1.096416 GTCGTCTCATCGTCCTCCTT 58.904 55.000 0.00 0.00 0.00 3.36
1913 1921 0.748729 GGTCGTCTCATCGTCCTCCT 60.749 60.000 0.00 0.00 36.45 3.69
1914 1922 1.030488 TGGTCGTCTCATCGTCCTCC 61.030 60.000 0.00 0.00 39.12 4.30
1915 1923 0.809385 TTGGTCGTCTCATCGTCCTC 59.191 55.000 0.00 0.00 39.12 3.71
1916 1924 0.811915 CTTGGTCGTCTCATCGTCCT 59.188 55.000 0.00 0.00 39.12 3.85
1917 1925 0.526662 ACTTGGTCGTCTCATCGTCC 59.473 55.000 0.00 0.00 38.90 4.79
1918 1926 2.783333 GTACTTGGTCGTCTCATCGTC 58.217 52.381 0.00 0.00 0.00 4.20
1919 1927 1.129998 CGTACTTGGTCGTCTCATCGT 59.870 52.381 0.00 0.00 0.00 3.73
1920 1928 1.129998 ACGTACTTGGTCGTCTCATCG 59.870 52.381 0.00 0.00 35.30 3.84
1921 1929 2.915738 ACGTACTTGGTCGTCTCATC 57.084 50.000 0.00 0.00 35.30 2.92
1922 1930 3.076621 TGTACGTACTTGGTCGTCTCAT 58.923 45.455 25.12 0.00 40.70 2.90
1923 1931 2.493035 TGTACGTACTTGGTCGTCTCA 58.507 47.619 25.12 0.00 40.70 3.27
1924 1932 3.486542 GGATGTACGTACTTGGTCGTCTC 60.487 52.174 25.12 5.84 40.70 3.36
1925 1933 2.421424 GGATGTACGTACTTGGTCGTCT 59.579 50.000 25.12 0.68 40.70 4.18
1926 1934 2.162208 TGGATGTACGTACTTGGTCGTC 59.838 50.000 25.12 9.37 40.70 4.20
1927 1935 2.161855 TGGATGTACGTACTTGGTCGT 58.838 47.619 25.12 0.05 42.82 4.34
1928 1936 2.925578 TGGATGTACGTACTTGGTCG 57.074 50.000 25.12 0.00 0.00 4.79
1929 1937 7.781548 AAATAATGGATGTACGTACTTGGTC 57.218 36.000 25.12 16.65 0.00 4.02
1930 1938 9.485206 GATAAATAATGGATGTACGTACTTGGT 57.515 33.333 25.12 9.75 0.00 3.67
1931 1939 8.932791 GGATAAATAATGGATGTACGTACTTGG 58.067 37.037 25.12 0.00 0.00 3.61
1932 1940 8.644619 CGGATAAATAATGGATGTACGTACTTG 58.355 37.037 25.12 0.27 0.00 3.16
1933 1941 7.330208 GCGGATAAATAATGGATGTACGTACTT 59.670 37.037 25.12 19.42 0.00 2.24
1934 1942 6.810182 GCGGATAAATAATGGATGTACGTACT 59.190 38.462 25.12 11.72 0.00 2.73
1935 1943 6.587226 TGCGGATAAATAATGGATGTACGTAC 59.413 38.462 18.90 18.90 0.00 3.67
1936 1944 6.587226 GTGCGGATAAATAATGGATGTACGTA 59.413 38.462 0.00 0.00 0.00 3.57
1937 1945 5.407387 GTGCGGATAAATAATGGATGTACGT 59.593 40.000 0.00 0.00 0.00 3.57
1938 1946 5.407084 TGTGCGGATAAATAATGGATGTACG 59.593 40.000 0.00 0.00 0.00 3.67
1939 1947 6.795098 TGTGCGGATAAATAATGGATGTAC 57.205 37.500 0.00 0.00 0.00 2.90
1940 1948 7.500892 AGTTTGTGCGGATAAATAATGGATGTA 59.499 33.333 1.64 0.00 0.00 2.29
1941 1949 6.321181 AGTTTGTGCGGATAAATAATGGATGT 59.679 34.615 1.64 0.00 0.00 3.06
1942 1950 6.638063 CAGTTTGTGCGGATAAATAATGGATG 59.362 38.462 1.64 0.00 0.00 3.51
1943 1951 6.545666 TCAGTTTGTGCGGATAAATAATGGAT 59.454 34.615 1.64 0.00 0.00 3.41
1944 1952 5.883115 TCAGTTTGTGCGGATAAATAATGGA 59.117 36.000 1.64 0.00 0.00 3.41
1945 1953 6.130298 TCAGTTTGTGCGGATAAATAATGG 57.870 37.500 1.64 0.00 0.00 3.16
1946 1954 8.633075 AAATCAGTTTGTGCGGATAAATAATG 57.367 30.769 1.64 2.97 0.00 1.90
1947 1955 8.465999 TGAAATCAGTTTGTGCGGATAAATAAT 58.534 29.630 1.64 0.00 0.00 1.28
1948 1956 7.821652 TGAAATCAGTTTGTGCGGATAAATAA 58.178 30.769 1.64 0.00 0.00 1.40
1949 1957 7.384439 TGAAATCAGTTTGTGCGGATAAATA 57.616 32.000 1.64 0.00 0.00 1.40
1950 1958 6.266168 TGAAATCAGTTTGTGCGGATAAAT 57.734 33.333 1.64 0.00 0.00 1.40
1951 1959 5.697473 TGAAATCAGTTTGTGCGGATAAA 57.303 34.783 0.00 0.00 0.00 1.40
1952 1960 5.895636 ATGAAATCAGTTTGTGCGGATAA 57.104 34.783 0.00 0.00 0.00 1.75
1953 1961 5.895636 AATGAAATCAGTTTGTGCGGATA 57.104 34.783 0.00 0.00 0.00 2.59
1954 1962 4.789012 AATGAAATCAGTTTGTGCGGAT 57.211 36.364 0.00 0.00 0.00 4.18
1955 1963 4.582701 AAATGAAATCAGTTTGTGCGGA 57.417 36.364 0.00 0.00 28.91 5.54
1962 1970 8.716909 ACGTTTTGAACAAAATGAAATCAGTTT 58.283 25.926 27.63 3.23 45.41 2.66
1963 1971 8.250538 ACGTTTTGAACAAAATGAAATCAGTT 57.749 26.923 27.63 9.32 45.41 3.16
1964 1972 7.826260 ACGTTTTGAACAAAATGAAATCAGT 57.174 28.000 27.63 9.85 45.41 3.41
1974 1982 9.843334 ACTCAACTTATTACGTTTTGAACAAAA 57.157 25.926 8.37 8.37 37.90 2.44
1983 1991 9.485206 ACTGTTCATACTCAACTTATTACGTTT 57.515 29.630 0.00 0.00 0.00 3.60
2020 2028 9.562226 ACCACCCTAATTATATAGCTCTACATT 57.438 33.333 0.00 0.00 0.00 2.71
2021 2029 9.562226 AACCACCCTAATTATATAGCTCTACAT 57.438 33.333 0.00 0.00 0.00 2.29
2022 2030 8.967779 AACCACCCTAATTATATAGCTCTACA 57.032 34.615 0.00 0.00 0.00 2.74
2023 2031 9.032624 TGAACCACCCTAATTATATAGCTCTAC 57.967 37.037 0.00 0.00 0.00 2.59
2024 2032 9.032624 GTGAACCACCCTAATTATATAGCTCTA 57.967 37.037 0.00 0.00 0.00 2.43
2025 2033 7.512746 TGTGAACCACCCTAATTATATAGCTCT 59.487 37.037 0.00 0.00 32.73 4.09
2026 2034 7.676947 TGTGAACCACCCTAATTATATAGCTC 58.323 38.462 0.00 0.00 32.73 4.09
2027 2035 7.292591 ACTGTGAACCACCCTAATTATATAGCT 59.707 37.037 0.00 0.00 32.73 3.32
2028 2036 7.450903 ACTGTGAACCACCCTAATTATATAGC 58.549 38.462 0.00 0.00 32.73 2.97
2029 2037 9.273016 CAACTGTGAACCACCCTAATTATATAG 57.727 37.037 0.00 0.00 32.73 1.31
2030 2038 8.994500 TCAACTGTGAACCACCCTAATTATATA 58.006 33.333 0.00 0.00 32.73 0.86
2031 2039 7.773690 GTCAACTGTGAACCACCCTAATTATAT 59.226 37.037 0.00 0.00 34.87 0.86
2032 2040 7.107542 GTCAACTGTGAACCACCCTAATTATA 58.892 38.462 0.00 0.00 34.87 0.98
2033 2041 5.944007 GTCAACTGTGAACCACCCTAATTAT 59.056 40.000 0.00 0.00 34.87 1.28
2034 2042 5.310451 GTCAACTGTGAACCACCCTAATTA 58.690 41.667 0.00 0.00 34.87 1.40
2035 2043 4.142038 GTCAACTGTGAACCACCCTAATT 58.858 43.478 0.00 0.00 34.87 1.40
2036 2044 3.497942 GGTCAACTGTGAACCACCCTAAT 60.498 47.826 6.91 0.00 35.20 1.73
2037 2045 2.158726 GGTCAACTGTGAACCACCCTAA 60.159 50.000 6.91 0.00 35.20 2.69
2038 2046 1.418637 GGTCAACTGTGAACCACCCTA 59.581 52.381 6.91 0.00 35.20 3.53
2039 2047 0.182775 GGTCAACTGTGAACCACCCT 59.817 55.000 6.91 0.00 35.20 4.34
2040 2048 0.106918 TGGTCAACTGTGAACCACCC 60.107 55.000 9.73 0.00 41.16 4.61
2041 2049 1.981256 ATGGTCAACTGTGAACCACC 58.019 50.000 14.59 2.74 41.16 4.61
2042 2050 5.242434 TGTATATGGTCAACTGTGAACCAC 58.758 41.667 14.59 5.39 41.16 4.16
2043 2051 5.491323 TGTATATGGTCAACTGTGAACCA 57.509 39.130 14.63 14.63 41.16 3.67
2044 2052 9.944376 ATATATGTATATGGTCAACTGTGAACC 57.056 33.333 5.20 5.20 41.16 3.62
2067 2075 9.807649 GCATCAGATTTTTGTGGTTTCTTATAT 57.192 29.630 0.00 0.00 0.00 0.86
2068 2076 8.250332 GGCATCAGATTTTTGTGGTTTCTTATA 58.750 33.333 0.00 0.00 0.00 0.98
2069 2077 7.099120 GGCATCAGATTTTTGTGGTTTCTTAT 58.901 34.615 0.00 0.00 0.00 1.73
2070 2078 6.041409 TGGCATCAGATTTTTGTGGTTTCTTA 59.959 34.615 0.00 0.00 0.00 2.10
2071 2079 5.163322 TGGCATCAGATTTTTGTGGTTTCTT 60.163 36.000 0.00 0.00 0.00 2.52
2072 2080 4.344679 TGGCATCAGATTTTTGTGGTTTCT 59.655 37.500 0.00 0.00 0.00 2.52
2073 2081 4.630111 TGGCATCAGATTTTTGTGGTTTC 58.370 39.130 0.00 0.00 0.00 2.78
2074 2082 4.634199 CTGGCATCAGATTTTTGTGGTTT 58.366 39.130 0.00 0.00 43.49 3.27
2075 2083 3.555586 GCTGGCATCAGATTTTTGTGGTT 60.556 43.478 0.00 0.00 43.49 3.67
2076 2084 2.028748 GCTGGCATCAGATTTTTGTGGT 60.029 45.455 0.00 0.00 43.49 4.16
2077 2085 2.613691 GCTGGCATCAGATTTTTGTGG 58.386 47.619 0.00 0.00 43.49 4.17
2078 2086 2.028839 TGGCTGGCATCAGATTTTTGTG 60.029 45.455 0.00 0.00 43.49 3.33
2079 2087 2.028748 GTGGCTGGCATCAGATTTTTGT 60.029 45.455 7.33 0.00 43.49 2.83
2080 2088 2.028839 TGTGGCTGGCATCAGATTTTTG 60.029 45.455 7.33 0.00 43.49 2.44
2081 2089 2.250031 TGTGGCTGGCATCAGATTTTT 58.750 42.857 7.33 0.00 43.49 1.94
2082 2090 1.927487 TGTGGCTGGCATCAGATTTT 58.073 45.000 7.33 0.00 43.49 1.82
2083 2091 1.822990 CTTGTGGCTGGCATCAGATTT 59.177 47.619 7.33 0.00 43.49 2.17
2084 2092 1.272313 ACTTGTGGCTGGCATCAGATT 60.272 47.619 7.33 0.00 43.49 2.40
2085 2093 0.330604 ACTTGTGGCTGGCATCAGAT 59.669 50.000 7.33 0.00 43.49 2.90
2086 2094 0.983467 TACTTGTGGCTGGCATCAGA 59.017 50.000 7.33 0.00 43.49 3.27
2087 2095 1.089920 GTACTTGTGGCTGGCATCAG 58.910 55.000 7.33 8.99 43.64 2.90
2088 2096 0.399833 TGTACTTGTGGCTGGCATCA 59.600 50.000 7.33 4.82 0.00 3.07
2089 2097 1.402968 CATGTACTTGTGGCTGGCATC 59.597 52.381 7.33 2.05 0.00 3.91
2090 2098 1.466856 CATGTACTTGTGGCTGGCAT 58.533 50.000 7.33 0.00 0.00 4.40
2091 2099 1.243342 GCATGTACTTGTGGCTGGCA 61.243 55.000 10.17 0.00 0.00 4.92
2092 2100 1.243342 TGCATGTACTTGTGGCTGGC 61.243 55.000 10.17 0.00 0.00 4.85
2093 2101 1.466856 ATGCATGTACTTGTGGCTGG 58.533 50.000 0.00 0.00 0.00 4.85
2094 2102 3.009026 TGTATGCATGTACTTGTGGCTG 58.991 45.455 10.16 0.00 0.00 4.85
2095 2103 3.348647 TGTATGCATGTACTTGTGGCT 57.651 42.857 10.16 0.00 0.00 4.75
2096 2104 4.433186 TTTGTATGCATGTACTTGTGGC 57.567 40.909 10.16 0.00 0.00 5.01
2097 2105 7.082700 TGTATTTGTATGCATGTACTTGTGG 57.917 36.000 10.16 0.00 0.00 4.17
2102 2110 9.950680 GCTTTTATGTATTTGTATGCATGTACT 57.049 29.630 10.16 0.00 37.60 2.73
2103 2111 9.950680 AGCTTTTATGTATTTGTATGCATGTAC 57.049 29.630 10.16 0.23 37.60 2.90
2105 2113 8.685427 TGAGCTTTTATGTATTTGTATGCATGT 58.315 29.630 10.16 0.00 37.60 3.21
2106 2114 9.687210 ATGAGCTTTTATGTATTTGTATGCATG 57.313 29.630 10.16 0.00 37.60 4.06
2107 2115 9.687210 CATGAGCTTTTATGTATTTGTATGCAT 57.313 29.630 3.79 3.79 39.86 3.96
2108 2116 7.648908 GCATGAGCTTTTATGTATTTGTATGCA 59.351 33.333 0.00 0.00 35.88 3.96
2109 2117 7.648908 TGCATGAGCTTTTATGTATTTGTATGC 59.351 33.333 0.00 0.00 42.74 3.14
2110 2118 9.687210 ATGCATGAGCTTTTATGTATTTGTATG 57.313 29.630 0.00 0.00 42.74 2.39
2113 2121 9.687210 CATATGCATGAGCTTTTATGTATTTGT 57.313 29.630 10.16 2.21 42.74 2.83
2114 2122 9.135843 CCATATGCATGAGCTTTTATGTATTTG 57.864 33.333 10.16 13.65 42.74 2.32
2115 2123 9.081204 TCCATATGCATGAGCTTTTATGTATTT 57.919 29.630 10.16 5.59 42.74 1.40
2116 2124 8.517878 GTCCATATGCATGAGCTTTTATGTATT 58.482 33.333 10.16 3.03 42.74 1.89
2117 2125 7.148356 CGTCCATATGCATGAGCTTTTATGTAT 60.148 37.037 10.16 12.26 42.74 2.29
2118 2126 6.147656 CGTCCATATGCATGAGCTTTTATGTA 59.852 38.462 10.16 0.00 42.74 2.29
2119 2127 5.049198 CGTCCATATGCATGAGCTTTTATGT 60.049 40.000 10.16 0.00 42.74 2.29
2120 2128 5.049198 ACGTCCATATGCATGAGCTTTTATG 60.049 40.000 10.16 2.01 42.74 1.90
2121 2129 5.065914 ACGTCCATATGCATGAGCTTTTAT 58.934 37.500 10.16 0.00 42.74 1.40
2122 2130 4.450976 ACGTCCATATGCATGAGCTTTTA 58.549 39.130 10.16 0.00 42.74 1.52
2123 2131 3.282021 ACGTCCATATGCATGAGCTTTT 58.718 40.909 10.16 0.00 42.74 2.27
2124 2132 2.874701 GACGTCCATATGCATGAGCTTT 59.125 45.455 10.16 0.00 42.74 3.51
2125 2133 2.487934 GACGTCCATATGCATGAGCTT 58.512 47.619 10.16 0.00 42.74 3.74
2126 2134 1.603931 CGACGTCCATATGCATGAGCT 60.604 52.381 10.16 0.00 42.74 4.09
2127 2135 0.786581 CGACGTCCATATGCATGAGC 59.213 55.000 10.16 0.00 42.57 4.26
2128 2136 2.054363 GTCGACGTCCATATGCATGAG 58.946 52.381 10.16 0.92 33.67 2.90
2129 2137 1.681264 AGTCGACGTCCATATGCATGA 59.319 47.619 10.16 0.00 33.67 3.07
2130 2138 2.054363 GAGTCGACGTCCATATGCATG 58.946 52.381 10.16 0.00 0.00 4.06
2131 2139 1.000163 GGAGTCGACGTCCATATGCAT 60.000 52.381 21.80 3.79 33.84 3.96
2132 2140 0.384309 GGAGTCGACGTCCATATGCA 59.616 55.000 21.80 0.00 33.84 3.96
2133 2141 0.660595 CGGAGTCGACGTCCATATGC 60.661 60.000 24.42 7.32 39.00 3.14
2134 2142 0.942252 TCGGAGTCGACGTCCATATG 59.058 55.000 24.42 13.66 40.88 1.78
2135 2143 1.671979 TTCGGAGTCGACGTCCATAT 58.328 50.000 24.42 3.34 45.92 1.78
2136 2144 1.399440 CTTTCGGAGTCGACGTCCATA 59.601 52.381 24.42 14.29 45.92 2.74
2137 2145 0.170561 CTTTCGGAGTCGACGTCCAT 59.829 55.000 24.42 4.67 45.92 3.41
2138 2146 1.577922 CTTTCGGAGTCGACGTCCA 59.422 57.895 24.42 14.07 45.92 4.02
2139 2147 1.154073 CCTTTCGGAGTCGACGTCC 60.154 63.158 18.62 18.62 45.92 4.79
2140 2148 1.800713 GCCTTTCGGAGTCGACGTC 60.801 63.158 10.46 5.18 45.92 4.34
2141 2149 2.079020 TTGCCTTTCGGAGTCGACGT 62.079 55.000 10.46 0.00 45.92 4.34
2142 2150 1.344942 CTTGCCTTTCGGAGTCGACG 61.345 60.000 10.46 0.00 45.92 5.12
2143 2151 0.319641 ACTTGCCTTTCGGAGTCGAC 60.320 55.000 7.70 7.70 45.92 4.20
2144 2152 0.319555 CACTTGCCTTTCGGAGTCGA 60.320 55.000 0.00 0.00 44.44 4.20
2145 2153 0.319555 TCACTTGCCTTTCGGAGTCG 60.320 55.000 0.00 0.00 37.82 4.18
2146 2154 1.433534 CTCACTTGCCTTTCGGAGTC 58.566 55.000 0.00 0.00 0.00 3.36
2147 2155 0.603975 GCTCACTTGCCTTTCGGAGT 60.604 55.000 0.00 0.00 0.00 3.85
2148 2156 0.321122 AGCTCACTTGCCTTTCGGAG 60.321 55.000 0.00 0.00 0.00 4.63
2149 2157 0.603707 CAGCTCACTTGCCTTTCGGA 60.604 55.000 0.00 0.00 0.00 4.55
2150 2158 1.580845 CCAGCTCACTTGCCTTTCGG 61.581 60.000 0.00 0.00 0.00 4.30
2151 2159 0.886490 ACCAGCTCACTTGCCTTTCG 60.886 55.000 0.00 0.00 0.00 3.46
2152 2160 1.268079 GAACCAGCTCACTTGCCTTTC 59.732 52.381 0.00 0.00 0.00 2.62
2153 2161 1.322442 GAACCAGCTCACTTGCCTTT 58.678 50.000 0.00 0.00 0.00 3.11
2154 2162 0.886490 CGAACCAGCTCACTTGCCTT 60.886 55.000 0.00 0.00 0.00 4.35
2155 2163 1.302033 CGAACCAGCTCACTTGCCT 60.302 57.895 0.00 0.00 0.00 4.75
2156 2164 1.598130 ACGAACCAGCTCACTTGCC 60.598 57.895 0.00 0.00 0.00 4.52
2157 2165 0.880278 TCACGAACCAGCTCACTTGC 60.880 55.000 0.00 0.00 0.00 4.01
2158 2166 1.143305 CTCACGAACCAGCTCACTTG 58.857 55.000 0.00 0.00 0.00 3.16
2159 2167 0.753262 ACTCACGAACCAGCTCACTT 59.247 50.000 0.00 0.00 0.00 3.16
2160 2168 1.617322 TACTCACGAACCAGCTCACT 58.383 50.000 0.00 0.00 0.00 3.41
2161 2169 2.531206 GATACTCACGAACCAGCTCAC 58.469 52.381 0.00 0.00 0.00 3.51
2162 2170 1.132453 CGATACTCACGAACCAGCTCA 59.868 52.381 0.00 0.00 0.00 4.26
2163 2171 1.828832 CGATACTCACGAACCAGCTC 58.171 55.000 0.00 0.00 0.00 4.09
2164 2172 0.179134 GCGATACTCACGAACCAGCT 60.179 55.000 0.00 0.00 0.00 4.24
2165 2173 0.179134 AGCGATACTCACGAACCAGC 60.179 55.000 0.00 0.00 0.00 4.85
2166 2174 2.279582 AAGCGATACTCACGAACCAG 57.720 50.000 0.00 0.00 0.00 4.00
2167 2175 2.736144 AAAGCGATACTCACGAACCA 57.264 45.000 0.00 0.00 0.00 3.67
2168 2176 2.347755 GGAAAAGCGATACTCACGAACC 59.652 50.000 0.00 0.00 0.00 3.62
2169 2177 2.027688 CGGAAAAGCGATACTCACGAAC 59.972 50.000 0.00 0.00 0.00 3.95
2170 2178 2.256174 CGGAAAAGCGATACTCACGAA 58.744 47.619 0.00 0.00 0.00 3.85
2171 2179 1.468565 CCGGAAAAGCGATACTCACGA 60.469 52.381 0.00 0.00 0.00 4.35
2172 2180 0.921347 CCGGAAAAGCGATACTCACG 59.079 55.000 0.00 0.00 0.00 4.35
2173 2181 0.651031 GCCGGAAAAGCGATACTCAC 59.349 55.000 5.05 0.00 0.00 3.51
2174 2182 0.535335 AGCCGGAAAAGCGATACTCA 59.465 50.000 5.05 0.00 34.64 3.41
2175 2183 1.209998 GAGCCGGAAAAGCGATACTC 58.790 55.000 5.05 0.00 34.64 2.59
2176 2184 0.527817 CGAGCCGGAAAAGCGATACT 60.528 55.000 5.05 0.00 34.64 2.12
2177 2185 1.925052 CGAGCCGGAAAAGCGATAC 59.075 57.895 5.05 0.00 34.64 2.24
2178 2186 1.881252 GCGAGCCGGAAAAGCGATA 60.881 57.895 5.05 0.00 34.64 2.92
2179 2187 3.195698 GCGAGCCGGAAAAGCGAT 61.196 61.111 5.05 0.00 34.64 4.58
2190 2198 0.654160 GTAAATTGTACCGGCGAGCC 59.346 55.000 9.30 3.59 0.00 4.70
2191 2199 1.326548 CTGTAAATTGTACCGGCGAGC 59.673 52.381 9.30 0.00 0.00 5.03
2192 2200 1.326548 GCTGTAAATTGTACCGGCGAG 59.673 52.381 9.30 0.06 0.00 5.03
2193 2201 1.361793 GCTGTAAATTGTACCGGCGA 58.638 50.000 9.30 0.00 0.00 5.54
2194 2202 0.025770 CGCTGTAAATTGTACCGGCG 59.974 55.000 0.00 0.00 34.51 6.46
2195 2203 0.247934 GCGCTGTAAATTGTACCGGC 60.248 55.000 0.00 0.00 0.00 6.13
2196 2204 0.375803 GGCGCTGTAAATTGTACCGG 59.624 55.000 7.64 0.00 0.00 5.28
2197 2205 1.365699 AGGCGCTGTAAATTGTACCG 58.634 50.000 7.64 0.00 0.00 4.02
2198 2206 6.607735 TTATTAGGCGCTGTAAATTGTACC 57.392 37.500 7.64 0.00 0.00 3.34
2199 2207 8.339714 TGAATTATTAGGCGCTGTAAATTGTAC 58.660 33.333 7.64 0.00 0.00 2.90
2200 2208 8.439993 TGAATTATTAGGCGCTGTAAATTGTA 57.560 30.769 7.64 0.00 0.00 2.41
2201 2209 7.282224 TCTGAATTATTAGGCGCTGTAAATTGT 59.718 33.333 7.64 0.00 0.00 2.71
2202 2210 7.639039 TCTGAATTATTAGGCGCTGTAAATTG 58.361 34.615 7.64 0.00 0.00 2.32
2203 2211 7.801716 TCTGAATTATTAGGCGCTGTAAATT 57.198 32.000 7.64 7.61 0.00 1.82
2204 2212 7.986085 ATCTGAATTATTAGGCGCTGTAAAT 57.014 32.000 7.64 4.89 0.00 1.40
2205 2213 7.602644 CCTATCTGAATTATTAGGCGCTGTAAA 59.397 37.037 7.64 0.00 0.00 2.01
2206 2214 7.097192 CCTATCTGAATTATTAGGCGCTGTAA 58.903 38.462 7.64 6.27 0.00 2.41
2207 2215 6.210784 ACCTATCTGAATTATTAGGCGCTGTA 59.789 38.462 7.64 0.00 0.00 2.74
2208 2216 5.012148 ACCTATCTGAATTATTAGGCGCTGT 59.988 40.000 7.64 0.00 0.00 4.40
2209 2217 5.482908 ACCTATCTGAATTATTAGGCGCTG 58.517 41.667 7.64 0.00 0.00 5.18
2210 2218 5.746990 ACCTATCTGAATTATTAGGCGCT 57.253 39.130 7.64 0.00 0.00 5.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.