Multiple sequence alignment - TraesCS4A01G115300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G115300 chr4A 100.000 4120 0 0 1 4120 140294027 140289908 0.000000e+00 7609
1 TraesCS4A01G115300 chr4A 100.000 4064 0 0 4367 8430 140289661 140285598 0.000000e+00 7505
2 TraesCS4A01G115300 chr4D 95.194 4099 92 31 4369 8405 333063674 333067729 0.000000e+00 6381
3 TraesCS4A01G115300 chr4D 93.099 2985 121 36 883 3839 333060338 333063265 0.000000e+00 4292
4 TraesCS4A01G115300 chr4D 94.505 273 6 3 3848 4120 333063352 333063615 6.090000e-111 412
5 TraesCS4A01G115300 chr4D 84.387 269 23 10 283 540 333059351 333059611 6.540000e-61 246
6 TraesCS4A01G115300 chr4D 81.726 197 11 6 557 730 333059941 333060135 3.170000e-29 141
7 TraesCS4A01G115300 chr4B 91.919 3428 149 40 730 4120 411519143 411522479 0.000000e+00 4678
8 TraesCS4A01G115300 chr4B 91.622 3187 102 49 5307 8430 411523993 411527077 0.000000e+00 4253
9 TraesCS4A01G115300 chr4B 93.670 932 39 7 4367 5278 411522539 411523470 0.000000e+00 1376
10 TraesCS4A01G115300 chr4B 84.674 261 22 15 283 540 411518267 411518512 2.350000e-60 244
11 TraesCS4A01G115300 chr1A 93.851 309 12 3 3664 3972 415643622 415643923 7.710000e-125 459
12 TraesCS4A01G115300 chr1A 89.017 346 20 9 3688 4028 357767787 357768119 6.090000e-111 412
13 TraesCS4A01G115300 chr1A 87.977 341 25 5 3664 4001 426838652 426838979 1.030000e-103 388
14 TraesCS4A01G115300 chr1A 84.286 210 19 6 4367 4564 415644023 415644230 8.640000e-45 193
15 TraesCS4A01G115300 chr1A 83.425 181 19 4 4401 4570 85835267 85835087 3.150000e-34 158
16 TraesCS4A01G115300 chr5D 87.705 366 30 6 3664 4029 344565292 344564942 6.090000e-111 412
17 TraesCS4A01G115300 chr5D 88.202 178 18 3 4367 4543 344564694 344564519 8.570000e-50 209
18 TraesCS4A01G115300 chr5B 87.568 370 28 9 3665 4030 383488734 383488379 6.090000e-111 412
19 TraesCS4A01G115300 chr7A 87.730 326 23 4 3665 3990 631426926 631427234 1.730000e-96 364
20 TraesCS4A01G115300 chr7A 86.473 207 25 3 4367 4571 338628479 338628274 3.060000e-54 224
21 TraesCS4A01G115300 chr3A 86.432 199 24 3 4367 4563 100428798 100428995 1.840000e-51 215
22 TraesCS4A01G115300 chr2D 85.167 209 17 8 4367 4563 63707385 63707179 1.430000e-47 202
23 TraesCS4A01G115300 chr3D 85.955 178 12 10 4367 4543 27896347 27896512 2.420000e-40 178
24 TraesCS4A01G115300 chr2A 86.301 146 12 2 4427 4564 105489412 105489557 1.470000e-32 152
25 TraesCS4A01G115300 chr7D 93.548 93 4 2 4469 4560 121903734 121903825 4.100000e-28 137
26 TraesCS4A01G115300 chrUn 88.636 88 10 0 4031 4118 137655468 137655381 3.220000e-19 108
27 TraesCS4A01G115300 chr6A 87.500 88 11 0 4031 4118 30996852 30996939 1.500000e-17 102


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G115300 chr4A 140285598 140294027 8429 True 7557.00 7609 100.00000 1 8430 2 chr4A.!!$R1 8429
1 TraesCS4A01G115300 chr4D 333059351 333067729 8378 False 2294.40 6381 89.78220 283 8405 5 chr4D.!!$F1 8122
2 TraesCS4A01G115300 chr4B 411518267 411527077 8810 False 2637.75 4678 90.47125 283 8430 4 chr4B.!!$F1 8147
3 TraesCS4A01G115300 chr1A 415643622 415644230 608 False 326.00 459 89.06850 3664 4564 2 chr1A.!!$F3 900
4 TraesCS4A01G115300 chr5D 344564519 344565292 773 True 310.50 412 87.95350 3664 4543 2 chr5D.!!$R1 879

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
23 24 0.034089 ATTGGAACTAGCCTGTGCCC 60.034 55.0 1.66 0.00 34.70 5.36 F
54 55 0.036199 TCATGGGCTGCAAAATTGGC 60.036 50.0 0.50 0.00 0.00 4.52 F
231 232 0.038067 TGATTCCGACCGAAAAGCGA 60.038 50.0 0.00 0.00 44.57 4.93 F
242 243 0.095417 GAAAAGCGACGATCCAGCAC 59.905 55.0 0.00 0.00 0.00 4.40 F
261 262 0.103937 CTTCTCGCAGGGATCCACTC 59.896 60.0 15.23 0.00 0.00 3.51 F
428 438 0.109412 CAAGTGCAAAGCTAGCTGCC 60.109 55.0 20.16 12.71 44.23 4.85 F
1267 2107 0.169672 CTCGCTTTCGGTTCGTAGGA 59.830 55.0 0.00 0.00 36.13 2.94 F
2234 3086 0.474614 TGATCCGTGAACCAAACCCA 59.525 50.0 0.00 0.00 0.00 4.51 F
3549 4428 0.385390 AAAAACCGTGCTTCTGCCAG 59.615 50.0 0.00 0.00 38.71 4.85 F
4415 5508 0.732880 GTCACTTAAGCGCGCTGAGA 60.733 55.0 36.49 25.56 0.00 3.27 F
4956 6068 0.893270 TTGTTGGGTCCTGCCATTCG 60.893 55.0 0.00 0.00 39.65 3.34 F
6391 8046 0.180406 ACACTGGCAGTTTCGACCTT 59.820 50.0 19.43 0.00 0.00 3.50 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 2115 0.028770 CATCTCTCGAGAGTCCGCAC 59.971 60.000 35.11 0.0 41.33 5.34 R
1888 2740 0.406361 GGACCAACCATACCCACCAA 59.594 55.000 0.00 0.0 38.79 3.67 R
2214 3066 1.074727 TGGGTTTGGTTCACGGATCAT 59.925 47.619 0.00 0.0 0.00 2.45 R
2234 3086 3.008704 ACAAGGCTGTATTTTCTACGGGT 59.991 43.478 0.00 0.0 32.54 5.28 R
2345 3197 7.769220 TCAGTATAACCTAAGCAAGTAGTGTC 58.231 38.462 0.00 0.0 0.00 3.67 R
2984 3858 5.175127 GGCACCAATTTAAATAACACAGGG 58.825 41.667 0.01 0.0 0.00 4.45 R
3391 4270 2.521465 CACAGTGGGGGCTTTGCA 60.521 61.111 0.00 0.0 0.00 4.08 R
3919 4876 1.339535 TGCTGTGTGAACCACTGAACA 60.340 47.619 3.89 0.0 44.81 3.18 R
5303 6925 0.462375 AAACCGGTGAAAACCAAGCC 59.538 50.000 8.52 0.0 0.00 4.35 R
6377 8032 0.534203 TCACCAAGGTCGAAACTGCC 60.534 55.000 0.00 0.0 0.00 4.85 R
7079 8743 1.434622 GCATCATGCTCGTGGTCTGG 61.435 60.000 1.02 0.0 40.96 3.86 R
8028 9721 0.108585 GAGCACAAACACCAGAGGGA 59.891 55.000 0.00 0.0 38.05 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.584835 TGCAATTGGAACTAGCCTGT 57.415 45.000 7.72 0.00 0.00 4.00
20 21 2.161855 TGCAATTGGAACTAGCCTGTG 58.838 47.619 7.72 0.00 0.00 3.66
21 22 1.135286 GCAATTGGAACTAGCCTGTGC 60.135 52.381 7.72 0.00 37.95 4.57
22 23 1.474077 CAATTGGAACTAGCCTGTGCC 59.526 52.381 0.00 0.00 38.69 5.01
23 24 0.034089 ATTGGAACTAGCCTGTGCCC 60.034 55.000 1.66 0.00 34.70 5.36
24 25 1.133809 TTGGAACTAGCCTGTGCCCT 61.134 55.000 1.66 0.00 34.70 5.19
25 26 1.078143 GGAACTAGCCTGTGCCCTG 60.078 63.158 0.00 0.00 38.69 4.45
26 27 1.746991 GAACTAGCCTGTGCCCTGC 60.747 63.158 0.00 0.00 38.69 4.85
27 28 2.469465 GAACTAGCCTGTGCCCTGCA 62.469 60.000 0.00 0.00 38.69 4.41
28 29 2.124819 CTAGCCTGTGCCCTGCAG 60.125 66.667 6.78 6.78 40.08 4.41
29 30 4.415150 TAGCCTGTGCCCTGCAGC 62.415 66.667 8.66 0.00 40.08 5.25
46 47 4.435970 CCCTGCTCATGGGCTGCA 62.436 66.667 20.42 10.76 37.99 4.41
47 48 2.361992 CCTGCTCATGGGCTGCAA 60.362 61.111 20.42 0.00 36.22 4.08
48 49 1.980232 CCTGCTCATGGGCTGCAAA 60.980 57.895 20.42 0.00 36.22 3.68
49 50 1.537814 CCTGCTCATGGGCTGCAAAA 61.538 55.000 20.42 0.00 36.22 2.44
50 51 0.535335 CTGCTCATGGGCTGCAAAAT 59.465 50.000 20.42 0.00 36.22 1.82
51 52 0.978151 TGCTCATGGGCTGCAAAATT 59.022 45.000 20.42 0.00 33.48 1.82
52 53 1.338294 TGCTCATGGGCTGCAAAATTG 60.338 47.619 20.42 0.00 33.48 2.32
53 54 2.010043 GCTCATGGGCTGCAAAATTGG 61.010 52.381 11.30 0.00 0.00 3.16
54 55 0.036199 TCATGGGCTGCAAAATTGGC 60.036 50.000 0.50 0.00 0.00 4.52
55 56 1.027792 CATGGGCTGCAAAATTGGCC 61.028 55.000 8.39 8.39 45.24 5.36
57 58 2.046023 GGCTGCAAAATTGGCCCC 60.046 61.111 0.00 0.00 38.77 5.80
58 59 2.434709 GCTGCAAAATTGGCCCCG 60.435 61.111 0.00 0.00 0.00 5.73
59 60 2.941616 GCTGCAAAATTGGCCCCGA 61.942 57.895 0.00 0.00 0.00 5.14
60 61 1.079888 CTGCAAAATTGGCCCCGAC 60.080 57.895 0.00 0.00 0.00 4.79
61 62 1.814772 CTGCAAAATTGGCCCCGACA 61.815 55.000 0.00 0.00 0.00 4.35
62 63 1.079888 GCAAAATTGGCCCCGACAG 60.080 57.895 0.00 0.00 0.00 3.51
63 64 1.079888 CAAAATTGGCCCCGACAGC 60.080 57.895 0.00 0.00 0.00 4.40
64 65 1.228862 AAAATTGGCCCCGACAGCT 60.229 52.632 0.00 0.00 0.00 4.24
65 66 0.039035 AAAATTGGCCCCGACAGCTA 59.961 50.000 0.00 0.00 0.00 3.32
66 67 0.039035 AAATTGGCCCCGACAGCTAA 59.961 50.000 0.00 0.00 35.05 3.09
67 68 0.039035 AATTGGCCCCGACAGCTAAA 59.961 50.000 0.00 0.00 34.20 1.85
68 69 0.679960 ATTGGCCCCGACAGCTAAAC 60.680 55.000 0.00 0.00 34.20 2.01
69 70 1.774894 TTGGCCCCGACAGCTAAACT 61.775 55.000 0.00 0.00 0.00 2.66
70 71 1.002502 GGCCCCGACAGCTAAACTT 60.003 57.895 0.00 0.00 0.00 2.66
71 72 0.251073 GGCCCCGACAGCTAAACTTA 59.749 55.000 0.00 0.00 0.00 2.24
72 73 1.653151 GCCCCGACAGCTAAACTTAG 58.347 55.000 0.00 0.00 0.00 2.18
84 85 1.523758 AAACTTAGCAGGTTCAGGCG 58.476 50.000 0.00 0.00 34.54 5.52
85 86 0.321653 AACTTAGCAGGTTCAGGCGG 60.322 55.000 0.00 0.00 34.54 6.13
86 87 2.046314 TTAGCAGGTTCAGGCGGC 60.046 61.111 0.00 0.00 34.54 6.53
87 88 2.803155 CTTAGCAGGTTCAGGCGGCA 62.803 60.000 13.08 0.00 34.54 5.69
88 89 2.404566 TTAGCAGGTTCAGGCGGCAA 62.405 55.000 13.08 0.00 34.54 4.52
89 90 4.043200 GCAGGTTCAGGCGGCAAC 62.043 66.667 13.08 7.77 0.00 4.17
90 91 2.281761 CAGGTTCAGGCGGCAACT 60.282 61.111 13.08 0.00 0.00 3.16
91 92 1.898574 CAGGTTCAGGCGGCAACTT 60.899 57.895 13.08 0.74 0.00 2.66
92 93 1.898574 AGGTTCAGGCGGCAACTTG 60.899 57.895 13.08 0.00 0.00 3.16
93 94 2.644992 GTTCAGGCGGCAACTTGG 59.355 61.111 13.08 0.00 0.00 3.61
94 95 2.597217 TTCAGGCGGCAACTTGGG 60.597 61.111 13.08 0.00 0.00 4.12
114 115 4.776322 CCCAGCCGTGCGATGGAA 62.776 66.667 14.40 0.00 36.09 3.53
115 116 2.745884 CCAGCCGTGCGATGGAAA 60.746 61.111 9.23 0.00 36.09 3.13
116 117 2.753966 CCAGCCGTGCGATGGAAAG 61.754 63.158 9.23 0.00 36.09 2.62
117 118 2.436646 AGCCGTGCGATGGAAAGG 60.437 61.111 0.00 0.00 0.00 3.11
118 119 3.508840 GCCGTGCGATGGAAAGGG 61.509 66.667 0.00 0.00 0.00 3.95
119 120 2.824041 CCGTGCGATGGAAAGGGG 60.824 66.667 0.00 0.00 0.00 4.79
120 121 3.508840 CGTGCGATGGAAAGGGGC 61.509 66.667 0.00 0.00 0.00 5.80
121 122 2.044946 GTGCGATGGAAAGGGGCT 60.045 61.111 0.00 0.00 0.00 5.19
122 123 2.115291 GTGCGATGGAAAGGGGCTC 61.115 63.158 0.00 0.00 0.00 4.70
123 124 2.517166 GCGATGGAAAGGGGCTCC 60.517 66.667 0.00 0.00 0.00 4.70
124 125 2.203070 CGATGGAAAGGGGCTCCG 60.203 66.667 0.00 0.00 38.33 4.63
125 126 2.517166 GATGGAAAGGGGCTCCGC 60.517 66.667 0.00 0.00 38.33 5.54
126 127 3.338250 ATGGAAAGGGGCTCCGCA 61.338 61.111 0.00 0.00 38.33 5.69
127 128 3.645268 ATGGAAAGGGGCTCCGCAC 62.645 63.158 0.00 0.00 38.33 5.34
129 130 4.388499 GAAAGGGGCTCCGCACGA 62.388 66.667 0.00 0.00 38.33 4.35
130 131 4.394712 AAAGGGGCTCCGCACGAG 62.395 66.667 0.00 0.00 42.04 4.18
140 141 4.457496 CGCACGAGGGTGGCTGAT 62.457 66.667 0.00 0.00 44.54 2.90
141 142 2.512515 GCACGAGGGTGGCTGATC 60.513 66.667 0.00 0.00 44.54 2.92
142 143 3.023949 GCACGAGGGTGGCTGATCT 62.024 63.158 0.00 0.00 44.54 2.75
143 144 1.153489 CACGAGGGTGGCTGATCTG 60.153 63.158 0.00 0.00 40.58 2.90
144 145 2.362369 ACGAGGGTGGCTGATCTGG 61.362 63.158 1.46 0.00 0.00 3.86
145 146 2.914289 GAGGGTGGCTGATCTGGG 59.086 66.667 1.46 0.00 0.00 4.45
146 147 3.412624 GAGGGTGGCTGATCTGGGC 62.413 68.421 1.46 4.06 0.00 5.36
147 148 3.731728 GGGTGGCTGATCTGGGCA 61.732 66.667 10.38 10.38 36.92 5.36
150 151 4.478531 TGGCTGATCTGGGCACTA 57.521 55.556 10.38 0.00 34.37 2.74
151 152 2.215191 TGGCTGATCTGGGCACTAG 58.785 57.895 10.38 0.00 38.73 2.57
152 153 0.618680 TGGCTGATCTGGGCACTAGT 60.619 55.000 10.38 0.00 38.42 2.57
153 154 1.342975 TGGCTGATCTGGGCACTAGTA 60.343 52.381 10.38 0.00 38.42 1.82
154 155 1.069358 GGCTGATCTGGGCACTAGTAC 59.931 57.143 0.00 0.00 38.42 2.73
155 156 1.269309 GCTGATCTGGGCACTAGTACG 60.269 57.143 0.00 0.00 38.42 3.67
156 157 2.025155 CTGATCTGGGCACTAGTACGT 58.975 52.381 0.00 0.00 38.42 3.57
157 158 1.749063 TGATCTGGGCACTAGTACGTG 59.251 52.381 0.00 0.00 38.42 4.49
158 159 2.022195 GATCTGGGCACTAGTACGTGA 58.978 52.381 0.00 0.00 38.42 4.35
159 160 1.171308 TCTGGGCACTAGTACGTGAC 58.829 55.000 0.00 1.92 42.29 3.67
160 161 0.885879 CTGGGCACTAGTACGTGACA 59.114 55.000 8.73 4.50 44.85 3.58
161 162 0.885879 TGGGCACTAGTACGTGACAG 59.114 55.000 8.73 0.00 44.85 3.51
162 163 0.458025 GGGCACTAGTACGTGACAGC 60.458 60.000 8.73 0.00 44.85 4.40
163 164 0.458025 GGCACTAGTACGTGACAGCC 60.458 60.000 0.00 0.00 42.56 4.85
164 165 0.242825 GCACTAGTACGTGACAGCCA 59.757 55.000 0.00 0.00 37.06 4.75
165 166 1.978542 CACTAGTACGTGACAGCCAC 58.021 55.000 0.00 0.00 42.30 5.01
166 167 0.886563 ACTAGTACGTGACAGCCACC 59.113 55.000 0.00 0.00 42.76 4.61
167 168 0.179171 CTAGTACGTGACAGCCACCG 60.179 60.000 0.00 0.00 42.76 4.94
168 169 0.890542 TAGTACGTGACAGCCACCGT 60.891 55.000 0.00 0.00 42.76 4.83
169 170 1.731969 GTACGTGACAGCCACCGTC 60.732 63.158 0.00 0.00 42.76 4.79
170 171 2.922950 TACGTGACAGCCACCGTCC 61.923 63.158 0.00 0.00 42.76 4.79
172 173 3.986006 GTGACAGCCACCGTCCGA 61.986 66.667 0.00 0.00 39.86 4.55
173 174 2.994995 TGACAGCCACCGTCCGAT 60.995 61.111 0.00 0.00 32.15 4.18
174 175 2.264794 GACAGCCACCGTCCGATT 59.735 61.111 0.00 0.00 0.00 3.34
175 176 1.252215 TGACAGCCACCGTCCGATTA 61.252 55.000 0.00 0.00 32.15 1.75
176 177 0.527817 GACAGCCACCGTCCGATTAG 60.528 60.000 0.00 0.00 0.00 1.73
177 178 1.227263 CAGCCACCGTCCGATTAGG 60.227 63.158 0.00 0.00 42.97 2.69
189 190 2.047679 CGATTAGGACGGACGGAATC 57.952 55.000 0.00 0.00 0.00 2.52
190 191 1.335689 CGATTAGGACGGACGGAATCC 60.336 57.143 0.00 0.00 45.20 3.01
191 192 1.962100 GATTAGGACGGACGGAATCCT 59.038 52.381 7.40 7.40 46.69 3.24
192 193 1.856629 TTAGGACGGACGGAATCCTT 58.143 50.000 7.52 0.00 46.69 3.36
193 194 1.396653 TAGGACGGACGGAATCCTTC 58.603 55.000 7.52 0.00 46.69 3.46
194 195 4.829588 GACGGACGGAATCCTTCC 57.170 61.111 14.30 14.30 46.69 3.46
209 210 8.718102 GGAATCCTTCCTTAATTTAAAAAGGC 57.282 34.615 17.46 9.32 46.57 4.35
210 211 7.491372 GGAATCCTTCCTTAATTTAAAAAGGCG 59.509 37.037 17.46 7.10 46.57 5.52
211 212 6.275494 TCCTTCCTTAATTTAAAAAGGCGG 57.725 37.500 17.46 13.54 41.76 6.13
212 213 5.776208 TCCTTCCTTAATTTAAAAAGGCGGT 59.224 36.000 17.46 0.00 41.76 5.68
213 214 5.867174 CCTTCCTTAATTTAAAAAGGCGGTG 59.133 40.000 12.17 4.47 41.76 4.94
214 215 6.294843 CCTTCCTTAATTTAAAAAGGCGGTGA 60.295 38.462 12.17 0.00 41.76 4.02
215 216 6.844097 TCCTTAATTTAAAAAGGCGGTGAT 57.156 33.333 12.17 0.00 41.76 3.06
216 217 7.234661 TCCTTAATTTAAAAAGGCGGTGATT 57.765 32.000 12.17 0.00 41.76 2.57
217 218 7.317390 TCCTTAATTTAAAAAGGCGGTGATTC 58.683 34.615 12.17 0.00 41.76 2.52
218 219 6.533723 CCTTAATTTAAAAAGGCGGTGATTCC 59.466 38.462 5.87 0.00 36.14 3.01
229 230 0.446616 GGTGATTCCGACCGAAAAGC 59.553 55.000 0.00 0.00 33.08 3.51
230 231 0.094730 GTGATTCCGACCGAAAAGCG 59.905 55.000 0.00 0.00 40.47 4.68
231 232 0.038067 TGATTCCGACCGAAAAGCGA 60.038 50.000 0.00 0.00 44.57 4.93
232 233 0.369248 GATTCCGACCGAAAAGCGAC 59.631 55.000 0.00 0.00 44.57 5.19
233 234 1.349259 ATTCCGACCGAAAAGCGACG 61.349 55.000 0.00 0.00 44.57 5.12
234 235 2.405061 TTCCGACCGAAAAGCGACGA 62.405 55.000 0.00 0.00 44.57 4.20
235 236 1.804326 CCGACCGAAAAGCGACGAT 60.804 57.895 0.00 0.00 44.57 3.73
236 237 1.624323 CGACCGAAAAGCGACGATC 59.376 57.895 0.00 0.00 44.57 3.69
237 238 1.740043 CGACCGAAAAGCGACGATCC 61.740 60.000 0.00 0.00 44.57 3.36
238 239 0.734942 GACCGAAAAGCGACGATCCA 60.735 55.000 0.00 0.00 44.57 3.41
239 240 0.736325 ACCGAAAAGCGACGATCCAG 60.736 55.000 0.00 0.00 44.57 3.86
240 241 1.345176 CGAAAAGCGACGATCCAGC 59.655 57.895 0.00 0.00 44.57 4.85
241 242 1.351430 CGAAAAGCGACGATCCAGCA 61.351 55.000 0.00 0.00 44.57 4.41
242 243 0.095417 GAAAAGCGACGATCCAGCAC 59.905 55.000 0.00 0.00 0.00 4.40
243 244 0.320771 AAAAGCGACGATCCAGCACT 60.321 50.000 0.00 0.00 0.00 4.40
244 245 0.320771 AAAGCGACGATCCAGCACTT 60.321 50.000 0.00 0.00 0.00 3.16
245 246 0.737715 AAGCGACGATCCAGCACTTC 60.738 55.000 0.00 0.00 0.00 3.01
246 247 1.153745 GCGACGATCCAGCACTTCT 60.154 57.895 0.00 0.00 0.00 2.85
247 248 1.142778 GCGACGATCCAGCACTTCTC 61.143 60.000 0.00 0.00 0.00 2.87
248 249 0.863538 CGACGATCCAGCACTTCTCG 60.864 60.000 0.00 0.00 35.56 4.04
249 250 1.142778 GACGATCCAGCACTTCTCGC 61.143 60.000 0.00 0.00 32.81 5.03
250 251 1.153765 CGATCCAGCACTTCTCGCA 60.154 57.895 0.00 0.00 0.00 5.10
251 252 1.144565 CGATCCAGCACTTCTCGCAG 61.145 60.000 0.00 0.00 0.00 5.18
252 253 0.809241 GATCCAGCACTTCTCGCAGG 60.809 60.000 0.00 0.00 37.38 4.85
253 254 2.249413 ATCCAGCACTTCTCGCAGGG 62.249 60.000 0.00 0.00 36.72 4.45
254 255 2.659016 CAGCACTTCTCGCAGGGA 59.341 61.111 0.00 0.00 0.00 4.20
255 256 1.220206 CAGCACTTCTCGCAGGGAT 59.780 57.895 0.00 0.00 0.00 3.85
256 257 0.809241 CAGCACTTCTCGCAGGGATC 60.809 60.000 0.00 0.00 0.00 3.36
257 258 1.522580 GCACTTCTCGCAGGGATCC 60.523 63.158 1.92 1.92 0.00 3.36
258 259 1.900351 CACTTCTCGCAGGGATCCA 59.100 57.895 15.23 0.00 0.00 3.41
259 260 0.460987 CACTTCTCGCAGGGATCCAC 60.461 60.000 15.23 2.86 0.00 4.02
260 261 0.616111 ACTTCTCGCAGGGATCCACT 60.616 55.000 15.23 5.45 0.00 4.00
261 262 0.103937 CTTCTCGCAGGGATCCACTC 59.896 60.000 15.23 0.00 0.00 3.51
262 263 1.330655 TTCTCGCAGGGATCCACTCC 61.331 60.000 15.23 0.00 44.11 3.85
263 264 2.038813 TCGCAGGGATCCACTCCA 59.961 61.111 15.23 0.00 46.98 3.86
264 265 2.187946 CGCAGGGATCCACTCCAC 59.812 66.667 15.23 0.00 46.98 4.02
265 266 2.592308 GCAGGGATCCACTCCACC 59.408 66.667 15.23 0.00 46.98 4.61
266 267 2.300967 GCAGGGATCCACTCCACCA 61.301 63.158 15.23 0.00 46.98 4.17
267 268 1.639635 GCAGGGATCCACTCCACCAT 61.640 60.000 15.23 0.00 46.98 3.55
268 269 0.182061 CAGGGATCCACTCCACCATG 59.818 60.000 15.23 0.00 46.98 3.66
269 270 0.990282 AGGGATCCACTCCACCATGG 60.990 60.000 15.23 11.19 46.98 3.66
277 278 3.253061 TCCACCATGGAACGGGCA 61.253 61.111 21.47 0.00 45.00 5.36
278 279 2.751436 CCACCATGGAACGGGCAG 60.751 66.667 21.47 0.00 40.96 4.85
279 280 3.443045 CACCATGGAACGGGCAGC 61.443 66.667 21.47 0.00 0.00 5.25
280 281 3.650950 ACCATGGAACGGGCAGCT 61.651 61.111 21.47 0.00 0.00 4.24
281 282 2.361610 CCATGGAACGGGCAGCTT 60.362 61.111 5.56 0.00 0.00 3.74
282 283 2.409870 CCATGGAACGGGCAGCTTC 61.410 63.158 5.56 0.00 0.00 3.86
283 284 2.044946 ATGGAACGGGCAGCTTCC 60.045 61.111 5.16 5.16 37.11 3.46
284 285 3.565214 TGGAACGGGCAGCTTCCA 61.565 61.111 9.96 9.96 43.05 3.53
285 286 2.747855 GGAACGGGCAGCTTCCAG 60.748 66.667 4.34 2.22 36.66 3.86
286 287 2.747855 GAACGGGCAGCTTCCAGG 60.748 66.667 7.52 0.00 0.00 4.45
293 294 2.328099 GCAGCTTCCAGGAACACCG 61.328 63.158 0.00 0.00 0.00 4.94
310 312 3.998672 GACTGTCCCGGCGACCAA 61.999 66.667 9.30 2.81 41.18 3.67
311 313 3.934391 GACTGTCCCGGCGACCAAG 62.934 68.421 9.30 12.38 41.18 3.61
312 314 4.003788 CTGTCCCGGCGACCAAGT 62.004 66.667 9.30 0.00 41.18 3.16
341 343 4.404654 CCAAGCGGCGTTTCCAGC 62.405 66.667 5.86 0.00 35.54 4.85
392 402 1.145819 GAAGAGCCCTGGCAGCTAG 59.854 63.158 9.56 0.00 41.75 3.42
403 413 2.103042 GCAGCTAGCCCGTTCACAG 61.103 63.158 12.13 0.00 37.23 3.66
428 438 0.109412 CAAGTGCAAAGCTAGCTGCC 60.109 55.000 20.16 12.71 44.23 4.85
464 475 1.442769 GCCATTCGAACTTCAGCTGA 58.557 50.000 13.74 13.74 0.00 4.26
466 477 2.223203 GCCATTCGAACTTCAGCTGATG 60.223 50.000 23.98 23.98 0.00 3.07
477 489 3.896648 TCAGCTGATGTTTTTCCGTTC 57.103 42.857 13.74 0.00 0.00 3.95
481 493 2.147958 CTGATGTTTTTCCGTTCGGGA 58.852 47.619 11.37 0.00 45.40 5.14
498 510 1.582610 GGAAAAAGTGGCCGCGATCA 61.583 55.000 8.23 1.66 0.00 2.92
501 513 1.577328 AAAAGTGGCCGCGATCAGTG 61.577 55.000 8.23 0.00 0.00 3.66
540 552 7.370383 AGTAAACGTGATTAGTTCTTCGGTTA 58.630 34.615 0.00 0.00 35.35 2.85
569 894 4.294416 TGAGATTACTTAGAGCAGCGAC 57.706 45.455 0.00 0.00 0.00 5.19
584 909 0.788391 GCGACGTTTACCTGGTCTTG 59.212 55.000 0.63 0.00 0.00 3.02
604 929 1.814248 GCCAGAACCAGGAACGTTTCT 60.814 52.381 2.29 2.29 0.00 2.52
674 1147 5.277857 AGGTAAAGTTAGATGATGGACCG 57.722 43.478 0.00 0.00 0.00 4.79
676 1149 5.602978 AGGTAAAGTTAGATGATGGACCGAT 59.397 40.000 0.00 0.00 0.00 4.18
732 1491 2.113860 TGTAGCAAATCAGCCTGTCC 57.886 50.000 0.00 0.00 34.23 4.02
735 1494 2.299326 AGCAAATCAGCCTGTCCTTT 57.701 45.000 0.00 0.00 34.23 3.11
761 1521 1.130561 GGGGCAAAATTTCGAGAGACG 59.869 52.381 0.00 0.00 41.84 4.18
763 1523 2.225727 GGGCAAAATTTCGAGAGACGTT 59.774 45.455 0.00 0.00 41.84 3.99
765 1525 4.083696 GGGCAAAATTTCGAGAGACGTTAA 60.084 41.667 0.00 0.00 41.84 2.01
767 1527 5.333875 GGCAAAATTTCGAGAGACGTTAAGT 60.334 40.000 0.00 0.00 41.84 2.24
812 1631 8.246180 CAGAACAAAGTAACCGGACTACTATTA 58.754 37.037 9.46 0.00 0.00 0.98
827 1646 8.654094 GGACTACTATTAAAAGCCCAATAGGTA 58.346 37.037 6.36 0.00 38.50 3.08
858 1677 6.564557 AATTCATTCAAACCCAGCCAATAT 57.435 33.333 0.00 0.00 0.00 1.28
859 1678 5.341872 TTCATTCAAACCCAGCCAATATG 57.658 39.130 0.00 0.00 0.00 1.78
868 1687 1.416401 CCAGCCAATATGGGTCTACGT 59.584 52.381 0.00 0.00 46.99 3.57
885 1704 1.224069 CGTGGTCCACAGACAAGCAG 61.224 60.000 21.91 0.00 45.48 4.24
920 1739 0.398522 TCCATACAGCCCATCGACCT 60.399 55.000 0.00 0.00 0.00 3.85
984 1812 3.244078 GGGACTGGAAACCCAAAAATCAC 60.244 47.826 0.00 0.00 44.96 3.06
995 1823 6.057321 ACCCAAAAATCACCGACTAGAATA 57.943 37.500 0.00 0.00 0.00 1.75
1018 1846 2.626780 GGCCCGAAACAGCAAGGTC 61.627 63.158 0.00 0.00 0.00 3.85
1263 2103 2.737376 GCCTCGCTTTCGGTTCGT 60.737 61.111 0.00 0.00 36.13 3.85
1264 2104 1.444895 GCCTCGCTTTCGGTTCGTA 60.445 57.895 0.00 0.00 36.13 3.43
1265 2105 1.411493 GCCTCGCTTTCGGTTCGTAG 61.411 60.000 0.00 0.00 36.13 3.51
1267 2107 0.169672 CTCGCTTTCGGTTCGTAGGA 59.830 55.000 0.00 0.00 36.13 2.94
1268 2108 0.813184 TCGCTTTCGGTTCGTAGGAT 59.187 50.000 0.00 0.00 36.13 3.24
1269 2109 2.016318 TCGCTTTCGGTTCGTAGGATA 58.984 47.619 0.00 0.00 36.13 2.59
1272 2115 3.057734 GCTTTCGGTTCGTAGGATATGG 58.942 50.000 0.00 0.00 0.00 2.74
1275 2118 1.338973 TCGGTTCGTAGGATATGGTGC 59.661 52.381 0.00 0.00 0.00 5.01
1298 2141 3.119779 GGACTCTCGAGAGATGAAACGTT 60.120 47.826 41.49 20.72 44.74 3.99
1299 2142 4.094590 GGACTCTCGAGAGATGAAACGTTA 59.905 45.833 41.49 5.46 44.74 3.18
1300 2143 5.224562 ACTCTCGAGAGATGAAACGTTAG 57.775 43.478 41.49 17.07 44.74 2.34
1301 2144 4.696402 ACTCTCGAGAGATGAAACGTTAGT 59.304 41.667 41.49 17.70 44.74 2.24
1302 2145 5.181622 ACTCTCGAGAGATGAAACGTTAGTT 59.818 40.000 41.49 16.57 44.74 2.24
1478 2321 5.975988 AAATTATTGCCTCCCTCTACAGA 57.024 39.130 0.00 0.00 0.00 3.41
1479 2322 5.559148 AATTATTGCCTCCCTCTACAGAG 57.441 43.478 0.00 0.00 41.71 3.35
1484 2327 1.892474 GCCTCCCTCTACAGAGCATAG 59.108 57.143 0.40 0.00 40.75 2.23
1492 2335 6.040955 TCCCTCTACAGAGCATAGTTGTAATG 59.959 42.308 0.40 0.00 40.75 1.90
1508 2351 1.660560 AATGTCCAAGCGAGCATGGC 61.661 55.000 13.84 9.84 41.64 4.40
1510 2353 4.032452 TCCAAGCGAGCATGGCCA 62.032 61.111 8.56 8.56 42.67 5.36
1516 2359 2.751259 CAAGCGAGCATGGCCATATATT 59.249 45.455 20.30 3.87 42.67 1.28
1518 2361 3.424703 AGCGAGCATGGCCATATATTTT 58.575 40.909 20.30 0.09 42.67 1.82
1520 2363 4.082571 AGCGAGCATGGCCATATATTTTTC 60.083 41.667 20.30 7.44 42.67 2.29
1521 2364 4.082571 GCGAGCATGGCCATATATTTTTCT 60.083 41.667 20.30 5.38 31.66 2.52
1548 2391 9.988350 AAATCGAGTTTGCATAAACAATAGTAG 57.012 29.630 4.19 0.00 46.76 2.57
1549 2392 7.000575 TCGAGTTTGCATAAACAATAGTAGC 57.999 36.000 4.19 0.00 46.76 3.58
1550 2393 6.816640 TCGAGTTTGCATAAACAATAGTAGCT 59.183 34.615 4.19 0.00 46.76 3.32
1553 2396 8.567285 AGTTTGCATAAACAATAGTAGCTCTT 57.433 30.769 4.19 0.00 46.76 2.85
1554 2397 9.014297 AGTTTGCATAAACAATAGTAGCTCTTT 57.986 29.630 4.19 0.00 46.76 2.52
1555 2398 9.065871 GTTTGCATAAACAATAGTAGCTCTTTG 57.934 33.333 0.00 0.00 44.38 2.77
1564 2407 3.336138 AGTAGCTCTTTGGTTGTAGGC 57.664 47.619 0.00 0.00 0.00 3.93
1588 2433 7.382759 GGCTGTAGTATGCTAGTAATTTCAGTC 59.617 40.741 0.00 0.00 0.00 3.51
1605 2450 1.271379 AGTCGGTTCATGCTGTAACGA 59.729 47.619 0.00 0.30 0.00 3.85
1610 2455 2.806244 GGTTCATGCTGTAACGAGTGTT 59.194 45.455 0.00 0.00 42.19 3.32
1611 2456 3.120649 GGTTCATGCTGTAACGAGTGTTC 60.121 47.826 0.00 0.00 39.54 3.18
1612 2457 3.378911 TCATGCTGTAACGAGTGTTCA 57.621 42.857 0.00 0.00 39.54 3.18
1627 2472 2.161211 GTGTTCATCTTTCCTGCAGAGC 59.839 50.000 17.39 0.00 0.00 4.09
1818 2663 5.560722 TGGTGAAACATCTCCACTTTAGA 57.439 39.130 0.00 0.00 39.98 2.10
1823 2668 9.832445 GGTGAAACATCTCCACTTTAGATTATA 57.168 33.333 0.00 0.00 39.98 0.98
1862 2707 8.600625 GGTGTTTTGTTTTACTTTTCATTCTCC 58.399 33.333 0.00 0.00 0.00 3.71
1864 2709 8.030106 TGTTTTGTTTTACTTTTCATTCTCCGT 58.970 29.630 0.00 0.00 0.00 4.69
1888 2740 4.815533 TCTCTTCTGTGCATAAGAAGCT 57.184 40.909 25.99 0.00 46.78 3.74
1900 2752 2.514458 AAGAAGCTTGGTGGGTATGG 57.486 50.000 2.10 0.00 0.00 2.74
1936 2788 7.533426 ACAAGCAATCTGTTTCTGATTATCAC 58.467 34.615 0.00 0.00 32.31 3.06
1943 2795 6.533730 TCTGTTTCTGATTATCACAAGTGGT 58.466 36.000 0.00 0.00 0.00 4.16
1944 2796 6.998074 TCTGTTTCTGATTATCACAAGTGGTT 59.002 34.615 0.00 0.00 0.00 3.67
1945 2797 7.502226 TCTGTTTCTGATTATCACAAGTGGTTT 59.498 33.333 0.00 0.00 0.00 3.27
1960 2812 8.936864 CACAAGTGGTTTATTTAGTCTTCCTAG 58.063 37.037 0.00 0.00 0.00 3.02
1961 2813 8.657712 ACAAGTGGTTTATTTAGTCTTCCTAGT 58.342 33.333 0.00 0.00 0.00 2.57
1962 2814 9.503399 CAAGTGGTTTATTTAGTCTTCCTAGTT 57.497 33.333 0.00 0.00 0.00 2.24
1963 2815 9.722184 AAGTGGTTTATTTAGTCTTCCTAGTTC 57.278 33.333 0.00 0.00 0.00 3.01
1964 2816 8.319881 AGTGGTTTATTTAGTCTTCCTAGTTCC 58.680 37.037 0.00 0.00 0.00 3.62
1965 2817 8.319881 GTGGTTTATTTAGTCTTCCTAGTTCCT 58.680 37.037 0.00 0.00 0.00 3.36
1966 2818 9.551339 TGGTTTATTTAGTCTTCCTAGTTCCTA 57.449 33.333 0.00 0.00 0.00 2.94
1973 2825 9.725206 TTTAGTCTTCCTAGTTCCTATATGGTT 57.275 33.333 0.00 0.00 37.07 3.67
2035 2887 3.478857 TCAAAGTCTCCGCTGGTAAAA 57.521 42.857 0.00 0.00 0.00 1.52
2041 2893 3.057526 AGTCTCCGCTGGTAAAATTTTGC 60.058 43.478 13.76 11.93 0.00 3.68
2064 2916 8.630054 TGCACAATAAAGTTATACCTTGAGTT 57.370 30.769 0.00 0.00 0.00 3.01
2212 3064 6.584185 AAGTTTAGGTATGGCGAAATTGTT 57.416 33.333 0.00 0.00 0.00 2.83
2214 3066 5.708230 AGTTTAGGTATGGCGAAATTGTTCA 59.292 36.000 0.00 0.00 32.89 3.18
2234 3086 0.474614 TGATCCGTGAACCAAACCCA 59.525 50.000 0.00 0.00 0.00 4.51
2345 3197 3.503363 TGTTCTTCAAATGGTGCTAGCAG 59.497 43.478 20.03 5.24 0.00 4.24
2981 3855 8.039538 ACTATGATGTATGATAGCATCCACTTG 58.960 37.037 0.00 0.00 40.37 3.16
2984 3858 4.129380 TGTATGATAGCATCCACTTGCAC 58.871 43.478 0.00 0.00 45.23 4.57
2985 3859 2.042686 TGATAGCATCCACTTGCACC 57.957 50.000 0.00 0.00 45.23 5.01
3277 4155 2.927871 GCATGGTCAATTCTTGTGGTGC 60.928 50.000 0.00 0.00 0.00 5.01
3306 4184 3.333029 TGCTGCTGTCTATTGCTTGTA 57.667 42.857 0.00 0.00 0.00 2.41
3391 4270 0.644937 ATCTGGGGTCTAGGCTCCTT 59.355 55.000 15.93 0.00 0.00 3.36
3549 4428 0.385390 AAAAACCGTGCTTCTGCCAG 59.615 50.000 0.00 0.00 38.71 4.85
3650 4529 2.802816 CCTGCCTCATTAGTCGTATTGC 59.197 50.000 0.00 0.00 0.00 3.56
3872 4829 7.441157 TGAAATAGCATATAAGGTTGAGGTTCG 59.559 37.037 0.00 0.00 0.00 3.95
4394 5487 1.235281 GCCCGCCTTCTTCGACTTTT 61.235 55.000 0.00 0.00 0.00 2.27
4412 5505 1.614227 TTCGTCACTTAAGCGCGCTG 61.614 55.000 37.24 24.89 0.00 5.18
4415 5508 0.732880 GTCACTTAAGCGCGCTGAGA 60.733 55.000 36.49 25.56 0.00 3.27
4663 5767 6.303839 TCAGGTAAACAATAGGCAAAGAAGT 58.696 36.000 0.00 0.00 0.00 3.01
4684 5788 4.024048 AGTGTATTTCAGCACAACTTTCCG 60.024 41.667 0.00 0.00 38.02 4.30
4956 6068 0.893270 TTGTTGGGTCCTGCCATTCG 60.893 55.000 0.00 0.00 39.65 3.34
5011 6124 2.427812 TGTCATTACATGCATGCCTTGG 59.572 45.455 26.53 12.41 0.00 3.61
5281 6406 6.385649 TTTGTTTCAGAATTTTCGGTAGCT 57.614 33.333 0.00 0.00 0.00 3.32
5330 6952 1.384525 TTTCACCGGTTTCCACTGTG 58.615 50.000 2.97 0.00 0.00 3.66
5612 7235 1.133356 GCCATTGCCTCTTATTCCCCT 60.133 52.381 0.00 0.00 0.00 4.79
5666 7289 1.202758 TGGACAACAACCTGGTGCTAG 60.203 52.381 0.00 0.00 39.04 3.42
5762 7385 7.644490 TGTTTAACCATGTTGTGTGTTATCTC 58.356 34.615 0.00 0.00 0.00 2.75
5816 7439 4.868171 CGCAAATTGTACTAGCCTTACTGA 59.132 41.667 0.00 0.00 0.00 3.41
5889 7512 4.021104 ACAAAGCCTGCCTTCCTTTTTATC 60.021 41.667 0.00 0.00 31.99 1.75
5890 7513 2.369394 AGCCTGCCTTCCTTTTTATCG 58.631 47.619 0.00 0.00 0.00 2.92
5962 7588 8.400947 CAATATATGCTTGCTGTCTAAAGTGTT 58.599 33.333 0.00 0.00 0.00 3.32
5963 7589 4.756084 ATGCTTGCTGTCTAAAGTGTTC 57.244 40.909 0.00 0.00 0.00 3.18
6377 8032 1.408340 TGGCACCAATCAAACACACTG 59.592 47.619 0.00 0.00 0.00 3.66
6391 8046 0.180406 ACACTGGCAGTTTCGACCTT 59.820 50.000 19.43 0.00 0.00 3.50
6632 8291 5.060662 TGAGTTGGAAGATAGTCTTGTCG 57.939 43.478 0.00 0.00 36.73 4.35
6634 8293 5.010719 TGAGTTGGAAGATAGTCTTGTCGTT 59.989 40.000 0.00 0.00 36.73 3.85
6804 8467 6.999705 TTGGGGAGTAGTTGTTAGTAAGAA 57.000 37.500 0.00 0.00 0.00 2.52
6806 8469 6.762333 TGGGGAGTAGTTGTTAGTAAGAAAC 58.238 40.000 0.00 0.00 0.00 2.78
6926 8590 4.881273 TGAGATTAACATTTAGCGGTGCAT 59.119 37.500 0.00 0.00 0.00 3.96
6935 8599 2.937469 TAGCGGTGCATGAATTTTGG 57.063 45.000 0.00 0.00 0.00 3.28
7079 8743 1.450312 CCTCCAGAACATGCCGGAC 60.450 63.158 5.05 0.00 0.00 4.79
7280 8944 5.759506 TCTCATACGCCAAAAAGTGAAAA 57.240 34.783 0.00 0.00 0.00 2.29
7339 9004 7.074653 TCTGTAACTGTAAGATTTTCCACCT 57.925 36.000 0.00 0.00 37.43 4.00
7426 9091 7.966204 GTGACTTGCTTGTTGTTTAAGAAGTTA 59.034 33.333 0.00 0.00 38.90 2.24
7543 9231 5.221661 ACAGTGGTAGGAGAAGTTAACAAGG 60.222 44.000 8.61 0.00 0.00 3.61
7553 9241 3.350219 AGTTAACAAGGCATGGACGAT 57.650 42.857 8.61 0.00 0.00 3.73
7600 9288 7.850193 AGAGAAAATCATCAGGCCTATCTATC 58.150 38.462 3.98 0.00 0.00 2.08
7601 9289 7.679453 AGAGAAAATCATCAGGCCTATCTATCT 59.321 37.037 3.98 1.80 0.00 1.98
7602 9290 8.907829 AGAAAATCATCAGGCCTATCTATCTA 57.092 34.615 3.98 0.00 0.00 1.98
7603 9291 9.504705 AGAAAATCATCAGGCCTATCTATCTAT 57.495 33.333 3.98 0.00 0.00 1.98
7646 9334 5.826208 CCATGGTCAGAGATGAATGAATGAA 59.174 40.000 2.57 0.00 0.00 2.57
7647 9335 6.490381 CCATGGTCAGAGATGAATGAATGAAT 59.510 38.462 2.57 0.00 0.00 2.57
7648 9336 6.937436 TGGTCAGAGATGAATGAATGAATG 57.063 37.500 0.00 0.00 0.00 2.67
7649 9337 6.655930 TGGTCAGAGATGAATGAATGAATGA 58.344 36.000 0.00 0.00 0.00 2.57
7859 9547 1.001020 TTGCATTCGTGGCCCTCAT 60.001 52.632 0.00 0.00 0.00 2.90
7923 9611 6.963796 AGTAGCTTTGAAGTTGAAGAATGTG 58.036 36.000 0.00 0.00 0.00 3.21
8002 9693 2.507407 AGGCAGGCGAAATTTCCTTA 57.493 45.000 12.54 0.00 0.00 2.69
8003 9694 2.802719 AGGCAGGCGAAATTTCCTTAA 58.197 42.857 12.54 0.00 0.00 1.85
8004 9695 2.492088 AGGCAGGCGAAATTTCCTTAAC 59.508 45.455 12.54 0.23 0.00 2.01
8005 9696 2.492088 GGCAGGCGAAATTTCCTTAACT 59.508 45.455 12.54 1.48 0.00 2.24
8006 9697 3.056821 GGCAGGCGAAATTTCCTTAACTT 60.057 43.478 12.54 0.00 0.00 2.66
8010 9701 6.349033 GCAGGCGAAATTTCCTTAACTTTCTA 60.349 38.462 12.54 0.00 0.00 2.10
8035 9728 4.157849 GGAAATAGTTCCCTTCCCTCTG 57.842 50.000 10.95 0.00 46.84 3.35
8309 10006 1.972075 TGACCGTTGTCTGGTTGGATA 59.028 47.619 0.00 0.00 40.63 2.59
8344 10041 6.110707 TCCTGATTCTTACGGGATTAAACAC 58.889 40.000 0.00 0.00 37.81 3.32
8360 10057 1.355971 ACACGCGCTTATGTAAGTGG 58.644 50.000 5.73 7.51 42.46 4.00
8402 10099 3.594603 GCAGGAGCTGTGTAAGTAGAA 57.405 47.619 0.00 0.00 37.91 2.10
8417 10114 6.647481 TGTAAGTAGAATTTACTCTGCGCAAA 59.353 34.615 13.05 1.92 33.66 3.68
8418 10115 5.532025 AGTAGAATTTACTCTGCGCAAAC 57.468 39.130 13.05 0.00 33.66 2.93
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.161855 CACAGGCTAGTTCCAATTGCA 58.838 47.619 0.00 0.00 0.00 4.08
1 2 1.135286 GCACAGGCTAGTTCCAATTGC 60.135 52.381 0.00 0.00 36.96 3.56
2 3 1.474077 GGCACAGGCTAGTTCCAATTG 59.526 52.381 0.00 0.00 40.87 2.32
3 4 1.616994 GGGCACAGGCTAGTTCCAATT 60.617 52.381 7.70 0.00 40.87 2.32
4 5 0.034089 GGGCACAGGCTAGTTCCAAT 60.034 55.000 7.70 0.00 40.87 3.16
5 6 1.133809 AGGGCACAGGCTAGTTCCAA 61.134 55.000 7.70 0.00 40.87 3.53
6 7 1.538876 AGGGCACAGGCTAGTTCCA 60.539 57.895 7.70 0.00 40.87 3.53
7 8 1.078143 CAGGGCACAGGCTAGTTCC 60.078 63.158 0.00 0.00 40.87 3.62
8 9 1.746991 GCAGGGCACAGGCTAGTTC 60.747 63.158 0.00 0.00 40.87 3.01
9 10 2.352805 GCAGGGCACAGGCTAGTT 59.647 61.111 0.00 0.00 40.87 2.24
10 11 2.930019 TGCAGGGCACAGGCTAGT 60.930 61.111 4.21 0.00 40.87 2.57
11 12 2.124819 CTGCAGGGCACAGGCTAG 60.125 66.667 5.57 0.00 40.87 3.42
12 13 4.415150 GCTGCAGGGCACAGGCTA 62.415 66.667 17.12 0.00 40.87 3.93
30 31 1.537814 TTTTGCAGCCCATGAGCAGG 61.538 55.000 0.76 0.00 39.72 4.85
31 32 0.535335 ATTTTGCAGCCCATGAGCAG 59.465 50.000 0.76 0.00 39.72 4.24
32 33 0.978151 AATTTTGCAGCCCATGAGCA 59.022 45.000 0.76 0.00 36.32 4.26
33 34 1.365699 CAATTTTGCAGCCCATGAGC 58.634 50.000 0.00 0.00 0.00 4.26
34 35 2.010043 GCCAATTTTGCAGCCCATGAG 61.010 52.381 0.00 0.00 0.00 2.90
35 36 0.036199 GCCAATTTTGCAGCCCATGA 60.036 50.000 0.00 0.00 0.00 3.07
36 37 1.027792 GGCCAATTTTGCAGCCCATG 61.028 55.000 0.00 0.00 39.60 3.66
37 38 1.300634 GGCCAATTTTGCAGCCCAT 59.699 52.632 0.00 0.00 39.60 4.00
38 39 2.749016 GGCCAATTTTGCAGCCCA 59.251 55.556 0.00 0.00 39.60 5.36
40 41 2.046023 GGGGCCAATTTTGCAGCC 60.046 61.111 4.39 3.86 44.99 4.85
41 42 2.434709 CGGGGCCAATTTTGCAGC 60.435 61.111 4.39 0.00 0.00 5.25
42 43 1.079888 GTCGGGGCCAATTTTGCAG 60.080 57.895 4.39 0.00 0.00 4.41
43 44 1.814772 CTGTCGGGGCCAATTTTGCA 61.815 55.000 4.39 0.00 0.00 4.08
44 45 1.079888 CTGTCGGGGCCAATTTTGC 60.080 57.895 4.39 0.00 0.00 3.68
45 46 1.079888 GCTGTCGGGGCCAATTTTG 60.080 57.895 4.39 0.00 0.00 2.44
46 47 0.039035 TAGCTGTCGGGGCCAATTTT 59.961 50.000 4.39 0.00 0.00 1.82
47 48 0.039035 TTAGCTGTCGGGGCCAATTT 59.961 50.000 4.39 0.00 0.00 1.82
48 49 0.039035 TTTAGCTGTCGGGGCCAATT 59.961 50.000 4.39 0.00 0.00 2.32
49 50 0.679960 GTTTAGCTGTCGGGGCCAAT 60.680 55.000 4.39 0.00 0.00 3.16
50 51 1.302993 GTTTAGCTGTCGGGGCCAA 60.303 57.895 4.39 0.00 0.00 4.52
51 52 1.774894 AAGTTTAGCTGTCGGGGCCA 61.775 55.000 4.39 0.00 0.00 5.36
52 53 0.251073 TAAGTTTAGCTGTCGGGGCC 59.749 55.000 0.00 0.00 0.00 5.80
53 54 1.653151 CTAAGTTTAGCTGTCGGGGC 58.347 55.000 0.00 0.00 0.00 5.80
63 64 2.673368 CGCCTGAACCTGCTAAGTTTAG 59.327 50.000 0.00 0.00 32.27 1.85
64 65 2.614481 CCGCCTGAACCTGCTAAGTTTA 60.614 50.000 0.00 0.00 0.00 2.01
65 66 1.523758 CGCCTGAACCTGCTAAGTTT 58.476 50.000 0.00 0.00 0.00 2.66
66 67 0.321653 CCGCCTGAACCTGCTAAGTT 60.322 55.000 0.00 0.00 0.00 2.66
67 68 1.296715 CCGCCTGAACCTGCTAAGT 59.703 57.895 0.00 0.00 0.00 2.24
68 69 2.109126 GCCGCCTGAACCTGCTAAG 61.109 63.158 0.00 0.00 0.00 2.18
69 70 2.046314 GCCGCCTGAACCTGCTAA 60.046 61.111 0.00 0.00 0.00 3.09
70 71 2.889606 TTGCCGCCTGAACCTGCTA 61.890 57.895 0.00 0.00 0.00 3.49
71 72 4.269523 TTGCCGCCTGAACCTGCT 62.270 61.111 0.00 0.00 0.00 4.24
72 73 4.043200 GTTGCCGCCTGAACCTGC 62.043 66.667 0.00 0.00 0.00 4.85
73 74 1.898574 AAGTTGCCGCCTGAACCTG 60.899 57.895 0.00 0.00 0.00 4.00
74 75 1.898574 CAAGTTGCCGCCTGAACCT 60.899 57.895 0.00 0.00 0.00 3.50
75 76 2.644992 CAAGTTGCCGCCTGAACC 59.355 61.111 0.00 0.00 0.00 3.62
76 77 2.644992 CCAAGTTGCCGCCTGAAC 59.355 61.111 0.00 0.00 0.00 3.18
77 78 2.597217 CCCAAGTTGCCGCCTGAA 60.597 61.111 0.00 0.00 0.00 3.02
97 98 4.776322 TTCCATCGCACGGCTGGG 62.776 66.667 0.00 0.00 0.00 4.45
98 99 2.745884 TTTCCATCGCACGGCTGG 60.746 61.111 0.00 6.31 0.00 4.85
99 100 2.753966 CCTTTCCATCGCACGGCTG 61.754 63.158 0.00 0.00 0.00 4.85
100 101 2.436646 CCTTTCCATCGCACGGCT 60.437 61.111 0.00 0.00 0.00 5.52
101 102 3.508840 CCCTTTCCATCGCACGGC 61.509 66.667 0.00 0.00 0.00 5.68
102 103 2.824041 CCCCTTTCCATCGCACGG 60.824 66.667 0.00 0.00 0.00 4.94
103 104 3.508840 GCCCCTTTCCATCGCACG 61.509 66.667 0.00 0.00 0.00 5.34
104 105 2.044946 AGCCCCTTTCCATCGCAC 60.045 61.111 0.00 0.00 0.00 5.34
105 106 2.272146 GAGCCCCTTTCCATCGCA 59.728 61.111 0.00 0.00 0.00 5.10
106 107 2.517166 GGAGCCCCTTTCCATCGC 60.517 66.667 0.00 0.00 34.74 4.58
107 108 2.203070 CGGAGCCCCTTTCCATCG 60.203 66.667 0.00 0.00 34.24 3.84
123 124 4.457496 ATCAGCCACCCTCGTGCG 62.457 66.667 0.00 0.00 38.79 5.34
124 125 2.512515 GATCAGCCACCCTCGTGC 60.513 66.667 0.00 0.00 38.79 5.34
125 126 1.153489 CAGATCAGCCACCCTCGTG 60.153 63.158 0.00 0.00 39.91 4.35
126 127 2.362369 CCAGATCAGCCACCCTCGT 61.362 63.158 0.00 0.00 0.00 4.18
127 128 2.503061 CCAGATCAGCCACCCTCG 59.497 66.667 0.00 0.00 0.00 4.63
128 129 2.914289 CCCAGATCAGCCACCCTC 59.086 66.667 0.00 0.00 0.00 4.30
129 130 3.415087 GCCCAGATCAGCCACCCT 61.415 66.667 0.00 0.00 0.00 4.34
130 131 3.731728 TGCCCAGATCAGCCACCC 61.732 66.667 0.00 0.00 0.00 4.61
131 132 1.626356 TAGTGCCCAGATCAGCCACC 61.626 60.000 0.00 0.00 0.00 4.61
132 133 0.179062 CTAGTGCCCAGATCAGCCAC 60.179 60.000 0.00 0.00 0.00 5.01
133 134 0.618680 ACTAGTGCCCAGATCAGCCA 60.619 55.000 0.00 0.00 0.00 4.75
134 135 1.069358 GTACTAGTGCCCAGATCAGCC 59.931 57.143 5.39 0.00 0.00 4.85
135 136 1.269309 CGTACTAGTGCCCAGATCAGC 60.269 57.143 5.39 0.00 0.00 4.26
136 137 2.025155 ACGTACTAGTGCCCAGATCAG 58.975 52.381 5.39 0.00 0.00 2.90
137 138 1.749063 CACGTACTAGTGCCCAGATCA 59.251 52.381 5.39 0.00 35.17 2.92
138 139 2.022195 TCACGTACTAGTGCCCAGATC 58.978 52.381 5.39 0.00 41.61 2.75
139 140 1.749634 GTCACGTACTAGTGCCCAGAT 59.250 52.381 5.39 0.00 41.61 2.90
140 141 1.171308 GTCACGTACTAGTGCCCAGA 58.829 55.000 5.39 0.00 41.61 3.86
141 142 0.885879 TGTCACGTACTAGTGCCCAG 59.114 55.000 5.39 0.00 41.61 4.45
142 143 0.885879 CTGTCACGTACTAGTGCCCA 59.114 55.000 5.39 0.00 41.61 5.36
143 144 0.458025 GCTGTCACGTACTAGTGCCC 60.458 60.000 5.39 0.00 41.61 5.36
144 145 0.458025 GGCTGTCACGTACTAGTGCC 60.458 60.000 5.39 3.03 41.61 5.01
145 146 0.242825 TGGCTGTCACGTACTAGTGC 59.757 55.000 5.39 2.60 41.61 4.40
146 147 1.402456 GGTGGCTGTCACGTACTAGTG 60.402 57.143 5.39 0.00 46.96 2.74
147 148 0.886563 GGTGGCTGTCACGTACTAGT 59.113 55.000 6.28 0.00 46.96 2.57
148 149 0.179171 CGGTGGCTGTCACGTACTAG 60.179 60.000 6.28 0.00 46.96 2.57
149 150 0.890542 ACGGTGGCTGTCACGTACTA 60.891 55.000 6.28 0.00 46.96 1.82
150 151 2.138656 GACGGTGGCTGTCACGTACT 62.139 60.000 6.28 0.00 46.96 2.73
151 152 1.731969 GACGGTGGCTGTCACGTAC 60.732 63.158 6.28 0.00 46.96 3.67
152 153 2.646719 GACGGTGGCTGTCACGTA 59.353 61.111 6.28 0.00 46.96 3.57
153 154 4.295119 GGACGGTGGCTGTCACGT 62.295 66.667 6.28 7.87 46.96 4.49
155 156 2.781595 AATCGGACGGTGGCTGTCAC 62.782 60.000 3.25 3.25 41.15 3.67
156 157 1.252215 TAATCGGACGGTGGCTGTCA 61.252 55.000 9.87 0.00 41.15 3.58
157 158 0.527817 CTAATCGGACGGTGGCTGTC 60.528 60.000 0.00 0.00 38.88 3.51
158 159 1.515954 CTAATCGGACGGTGGCTGT 59.484 57.895 0.00 0.00 0.00 4.40
159 160 1.227263 CCTAATCGGACGGTGGCTG 60.227 63.158 0.00 0.00 33.16 4.85
160 161 1.380785 TCCTAATCGGACGGTGGCT 60.381 57.895 0.00 0.00 36.69 4.75
161 162 3.213264 TCCTAATCGGACGGTGGC 58.787 61.111 0.00 0.00 36.69 5.01
170 171 1.335689 GGATTCCGTCCGTCCTAATCG 60.336 57.143 0.00 0.00 37.23 3.34
171 172 2.435533 GGATTCCGTCCGTCCTAATC 57.564 55.000 0.00 0.00 37.23 1.75
185 186 7.491372 CCGCCTTTTTAAATTAAGGAAGGATTC 59.509 37.037 22.81 11.54 46.67 2.52
186 187 7.038587 ACCGCCTTTTTAAATTAAGGAAGGATT 60.039 33.333 24.93 11.84 42.90 3.01
187 188 6.439375 ACCGCCTTTTTAAATTAAGGAAGGAT 59.561 34.615 24.93 14.62 42.90 3.24
188 189 5.776208 ACCGCCTTTTTAAATTAAGGAAGGA 59.224 36.000 24.93 0.00 42.90 3.36
189 190 5.867174 CACCGCCTTTTTAAATTAAGGAAGG 59.133 40.000 18.83 19.84 42.90 3.46
190 191 6.683715 TCACCGCCTTTTTAAATTAAGGAAG 58.316 36.000 18.83 12.29 42.90 3.46
191 192 6.651975 TCACCGCCTTTTTAAATTAAGGAA 57.348 33.333 18.83 0.00 42.90 3.36
192 193 6.844097 ATCACCGCCTTTTTAAATTAAGGA 57.156 33.333 18.83 2.34 42.90 3.36
193 194 6.533723 GGAATCACCGCCTTTTTAAATTAAGG 59.466 38.462 12.55 12.55 43.08 2.69
194 195 7.520119 GGAATCACCGCCTTTTTAAATTAAG 57.480 36.000 0.00 0.00 0.00 1.85
210 211 0.446616 GCTTTTCGGTCGGAATCACC 59.553 55.000 0.00 0.00 33.85 4.02
211 212 0.094730 CGCTTTTCGGTCGGAATCAC 59.905 55.000 0.00 0.00 33.85 3.06
212 213 0.038067 TCGCTTTTCGGTCGGAATCA 60.038 50.000 0.00 0.00 39.05 2.57
213 214 0.369248 GTCGCTTTTCGGTCGGAATC 59.631 55.000 0.00 0.00 39.05 2.52
214 215 1.349259 CGTCGCTTTTCGGTCGGAAT 61.349 55.000 0.00 0.00 39.05 3.01
215 216 2.017783 CGTCGCTTTTCGGTCGGAA 61.018 57.895 0.00 0.00 39.05 4.30
216 217 2.203972 ATCGTCGCTTTTCGGTCGGA 62.204 55.000 0.00 0.00 39.05 4.55
217 218 1.740043 GATCGTCGCTTTTCGGTCGG 61.740 60.000 0.00 0.00 39.05 4.79
218 219 1.624323 GATCGTCGCTTTTCGGTCG 59.376 57.895 0.00 0.00 39.05 4.79
219 220 0.734942 TGGATCGTCGCTTTTCGGTC 60.735 55.000 0.00 0.00 39.05 4.79
220 221 0.736325 CTGGATCGTCGCTTTTCGGT 60.736 55.000 0.00 0.00 39.05 4.69
221 222 1.999051 CTGGATCGTCGCTTTTCGG 59.001 57.895 0.00 0.00 39.05 4.30
222 223 1.345176 GCTGGATCGTCGCTTTTCG 59.655 57.895 0.00 0.00 40.15 3.46
223 224 0.095417 GTGCTGGATCGTCGCTTTTC 59.905 55.000 0.00 0.00 0.00 2.29
224 225 0.320771 AGTGCTGGATCGTCGCTTTT 60.321 50.000 0.00 0.00 0.00 2.27
225 226 0.320771 AAGTGCTGGATCGTCGCTTT 60.321 50.000 0.00 0.00 0.00 3.51
226 227 0.737715 GAAGTGCTGGATCGTCGCTT 60.738 55.000 6.14 6.14 33.76 4.68
227 228 1.153745 GAAGTGCTGGATCGTCGCT 60.154 57.895 0.00 0.00 0.00 4.93
228 229 1.142778 GAGAAGTGCTGGATCGTCGC 61.143 60.000 0.00 0.00 0.00 5.19
229 230 0.863538 CGAGAAGTGCTGGATCGTCG 60.864 60.000 0.00 0.00 0.00 5.12
230 231 1.142778 GCGAGAAGTGCTGGATCGTC 61.143 60.000 0.00 0.00 35.87 4.20
231 232 1.153745 GCGAGAAGTGCTGGATCGT 60.154 57.895 0.00 0.00 35.87 3.73
232 233 1.144565 CTGCGAGAAGTGCTGGATCG 61.145 60.000 0.00 0.00 36.51 3.69
233 234 2.675519 CTGCGAGAAGTGCTGGATC 58.324 57.895 0.00 0.00 0.00 3.36
234 235 4.928398 CTGCGAGAAGTGCTGGAT 57.072 55.556 0.00 0.00 0.00 3.41
237 238 0.809241 GATCCCTGCGAGAAGTGCTG 60.809 60.000 0.00 0.00 0.00 4.41
238 239 1.519719 GATCCCTGCGAGAAGTGCT 59.480 57.895 0.00 0.00 0.00 4.40
239 240 1.522580 GGATCCCTGCGAGAAGTGC 60.523 63.158 0.00 0.00 0.00 4.40
240 241 0.460987 GTGGATCCCTGCGAGAAGTG 60.461 60.000 9.90 0.00 0.00 3.16
241 242 0.616111 AGTGGATCCCTGCGAGAAGT 60.616 55.000 9.90 0.00 0.00 3.01
242 243 0.103937 GAGTGGATCCCTGCGAGAAG 59.896 60.000 9.90 0.00 0.00 2.85
243 244 1.330655 GGAGTGGATCCCTGCGAGAA 61.331 60.000 9.90 0.00 43.01 2.87
244 245 1.758514 GGAGTGGATCCCTGCGAGA 60.759 63.158 9.90 0.00 43.01 4.04
245 246 2.818132 GGAGTGGATCCCTGCGAG 59.182 66.667 9.90 0.00 43.01 5.03
252 253 2.620234 TCCATGGTGGAGTGGATCC 58.380 57.895 12.58 4.20 42.67 3.36
260 261 3.253061 TGCCCGTTCCATGGTGGA 61.253 61.111 12.58 0.00 46.61 4.02
261 262 2.751436 CTGCCCGTTCCATGGTGG 60.751 66.667 12.58 12.16 39.43 4.61
262 263 3.443045 GCTGCCCGTTCCATGGTG 61.443 66.667 12.58 2.96 0.00 4.17
263 264 3.210012 AAGCTGCCCGTTCCATGGT 62.210 57.895 12.58 0.00 0.00 3.55
264 265 2.361610 AAGCTGCCCGTTCCATGG 60.362 61.111 4.97 4.97 0.00 3.66
265 266 2.409870 GGAAGCTGCCCGTTCCATG 61.410 63.158 0.00 0.00 41.76 3.66
266 267 2.044946 GGAAGCTGCCCGTTCCAT 60.045 61.111 0.00 0.00 41.76 3.41
268 269 2.747855 CTGGAAGCTGCCCGTTCC 60.748 66.667 8.77 11.13 42.39 3.62
269 270 2.747855 CCTGGAAGCTGCCCGTTC 60.748 66.667 8.77 0.00 0.00 3.95
270 271 2.829384 TTCCTGGAAGCTGCCCGTT 61.829 57.895 8.77 0.00 0.00 4.44
271 272 3.249189 TTCCTGGAAGCTGCCCGT 61.249 61.111 8.77 0.00 0.00 5.28
272 273 2.747855 GTTCCTGGAAGCTGCCCG 60.748 66.667 8.77 0.38 0.00 6.13
273 274 1.973812 GTGTTCCTGGAAGCTGCCC 60.974 63.158 8.77 3.01 0.00 5.36
274 275 1.973812 GGTGTTCCTGGAAGCTGCC 60.974 63.158 9.92 2.64 0.00 4.85
275 276 2.328099 CGGTGTTCCTGGAAGCTGC 61.328 63.158 9.92 0.00 0.00 5.25
276 277 0.951040 GTCGGTGTTCCTGGAAGCTG 60.951 60.000 9.92 10.90 0.00 4.24
277 278 1.122019 AGTCGGTGTTCCTGGAAGCT 61.122 55.000 9.92 0.00 0.00 3.74
278 279 0.951040 CAGTCGGTGTTCCTGGAAGC 60.951 60.000 9.92 5.90 0.00 3.86
279 280 0.393077 ACAGTCGGTGTTCCTGGAAG 59.607 55.000 9.92 0.00 34.94 3.46
280 281 0.391597 GACAGTCGGTGTTCCTGGAA 59.608 55.000 4.68 4.68 40.56 3.53
281 282 1.469335 GGACAGTCGGTGTTCCTGGA 61.469 60.000 0.00 0.00 40.56 3.86
282 283 1.004918 GGACAGTCGGTGTTCCTGG 60.005 63.158 0.00 0.00 40.56 4.45
283 284 4.675404 GGACAGTCGGTGTTCCTG 57.325 61.111 0.00 0.00 40.56 3.86
286 287 2.048503 CCGGGACAGTCGGTGTTC 60.049 66.667 0.00 0.00 40.56 3.18
306 308 2.990967 CATTGGCCGCCACTTGGT 60.991 61.111 13.00 0.00 37.57 3.67
307 309 4.440127 GCATTGGCCGCCACTTGG 62.440 66.667 13.00 2.95 30.78 3.61
477 489 4.398598 CGCGGCCACTTTTTCCCG 62.399 66.667 2.24 0.00 43.38 5.14
481 493 0.889186 ACTGATCGCGGCCACTTTTT 60.889 50.000 6.13 0.00 0.00 1.94
498 510 6.370718 ACGTTTACTCTGTCAAAAGTTTCACT 59.629 34.615 0.00 0.00 0.00 3.41
501 513 6.768078 TCACGTTTACTCTGTCAAAAGTTTC 58.232 36.000 0.00 0.00 0.00 2.78
540 552 7.129457 TGCTCTAAGTAATCTCATGTCCATT 57.871 36.000 0.00 0.00 0.00 3.16
569 894 3.315765 TGGCAAGACCAGGTAAACG 57.684 52.632 0.00 0.00 46.36 3.60
584 909 0.591659 GAAACGTTCCTGGTTCTGGC 59.408 55.000 0.00 0.00 0.00 4.85
604 929 4.159506 CCTCACTTTTGAAAGGTTCCAACA 59.840 41.667 8.23 0.00 40.31 3.33
650 982 5.290386 GGTCCATCATCTAACTTTACCTCG 58.710 45.833 0.00 0.00 0.00 4.63
657 1003 6.766467 GGTAAAATCGGTCCATCATCTAACTT 59.234 38.462 0.00 0.00 0.00 2.66
659 1005 6.053005 TGGTAAAATCGGTCCATCATCTAAC 58.947 40.000 0.00 0.00 0.00 2.34
660 1006 6.241882 TGGTAAAATCGGTCCATCATCTAA 57.758 37.500 0.00 0.00 0.00 2.10
674 1147 2.677836 TCACTCGCTGCATGGTAAAATC 59.322 45.455 0.00 0.00 0.00 2.17
676 1149 2.177394 TCACTCGCTGCATGGTAAAA 57.823 45.000 0.00 0.00 0.00 1.52
709 1182 4.261994 GGACAGGCTGATTTGCTACAAAAA 60.262 41.667 23.66 0.00 0.00 1.94
744 1503 5.676953 ACTTAACGTCTCTCGAAATTTTGC 58.323 37.500 0.01 0.00 42.86 3.68
745 1504 8.543071 AAAACTTAACGTCTCTCGAAATTTTG 57.457 30.769 0.00 0.00 42.86 2.44
832 1651 5.046288 TGGCTGGGTTTGAATGAATTTTT 57.954 34.783 0.00 0.00 0.00 1.94
851 1670 1.140252 ACCACGTAGACCCATATTGGC 59.860 52.381 0.00 0.00 35.79 4.52
852 1671 2.224209 GGACCACGTAGACCCATATTGG 60.224 54.545 0.00 0.00 37.25 3.16
858 1677 1.152504 TGTGGACCACGTAGACCCA 60.153 57.895 19.67 0.00 37.14 4.51
859 1678 0.896940 TCTGTGGACCACGTAGACCC 60.897 60.000 19.67 0.00 37.14 4.46
868 1687 1.451504 CCTGCTTGTCTGTGGACCA 59.548 57.895 0.00 0.00 41.47 4.02
920 1739 3.066190 CGAGGTCGGTACAGGCCA 61.066 66.667 19.13 0.00 38.64 5.36
984 1812 0.531200 GGCCGGGATATTCTAGTCGG 59.469 60.000 2.18 0.00 40.33 4.79
995 1823 4.796495 GCTGTTTCGGGCCGGGAT 62.796 66.667 27.98 0.00 0.00 3.85
1018 1846 4.605967 GGCGAGCGCGAGAGAGAG 62.606 72.222 15.92 0.00 43.06 3.20
1256 2096 1.779569 GCACCATATCCTACGAACCG 58.220 55.000 0.00 0.00 0.00 4.44
1259 2099 1.338973 GTCCGCACCATATCCTACGAA 59.661 52.381 0.00 0.00 0.00 3.85
1261 2101 0.959553 AGTCCGCACCATATCCTACG 59.040 55.000 0.00 0.00 0.00 3.51
1263 2103 2.515854 GAGAGTCCGCACCATATCCTA 58.484 52.381 0.00 0.00 0.00 2.94
1264 2104 1.333177 GAGAGTCCGCACCATATCCT 58.667 55.000 0.00 0.00 0.00 3.24
1265 2105 0.039074 CGAGAGTCCGCACCATATCC 60.039 60.000 0.00 0.00 0.00 2.59
1267 2107 0.955178 CTCGAGAGTCCGCACCATAT 59.045 55.000 6.58 0.00 0.00 1.78
1268 2108 0.107361 TCTCGAGAGTCCGCACCATA 60.107 55.000 12.08 0.00 0.00 2.74
1269 2109 1.378646 TCTCGAGAGTCCGCACCAT 60.379 57.895 12.08 0.00 0.00 3.55
1272 2115 0.028770 CATCTCTCGAGAGTCCGCAC 59.971 60.000 35.11 0.00 41.33 5.34
1275 2118 2.537931 CGTTTCATCTCTCGAGAGTCCG 60.538 54.545 35.11 25.27 41.33 4.79
1298 2141 5.588648 GGCCAGCATTTAACACTATGAACTA 59.411 40.000 0.00 0.00 0.00 2.24
1299 2142 4.399303 GGCCAGCATTTAACACTATGAACT 59.601 41.667 0.00 0.00 0.00 3.01
1300 2143 4.672409 GGCCAGCATTTAACACTATGAAC 58.328 43.478 0.00 0.00 0.00 3.18
1301 2144 3.376859 CGGCCAGCATTTAACACTATGAA 59.623 43.478 2.24 0.00 0.00 2.57
1302 2145 2.942376 CGGCCAGCATTTAACACTATGA 59.058 45.455 2.24 0.00 0.00 2.15
1334 2177 0.962356 ACCAAAATCGGGCAGCTCAG 60.962 55.000 0.00 0.00 0.00 3.35
1338 2181 0.732538 CGAAACCAAAATCGGGCAGC 60.733 55.000 0.00 0.00 35.49 5.25
1414 2257 1.000618 CAGCTTGCAGAGAGTGAGACA 59.999 52.381 0.00 0.00 0.00 3.41
1415 2258 1.712401 CAGCTTGCAGAGAGTGAGAC 58.288 55.000 0.00 0.00 0.00 3.36
1420 2263 1.373999 GACGCAGCTTGCAGAGAGT 60.374 57.895 8.52 0.00 45.36 3.24
1478 2321 3.623060 CGCTTGGACATTACAACTATGCT 59.377 43.478 0.00 0.00 0.00 3.79
1479 2322 3.621268 TCGCTTGGACATTACAACTATGC 59.379 43.478 0.00 0.00 0.00 3.14
1484 2327 1.804151 TGCTCGCTTGGACATTACAAC 59.196 47.619 0.00 0.00 0.00 3.32
1492 2335 3.512516 GGCCATGCTCGCTTGGAC 61.513 66.667 23.24 18.53 41.96 4.02
1516 2359 9.737427 TTGTTTATGCAAACTCGATTTAGAAAA 57.263 25.926 0.00 0.00 43.73 2.29
1520 2363 9.988350 ACTATTGTTTATGCAAACTCGATTTAG 57.012 29.630 0.00 0.00 43.73 1.85
1547 2390 1.421646 ACAGCCTACAACCAAAGAGCT 59.578 47.619 0.00 0.00 0.00 4.09
1548 2391 1.897560 ACAGCCTACAACCAAAGAGC 58.102 50.000 0.00 0.00 0.00 4.09
1549 2392 4.273148 ACTACAGCCTACAACCAAAGAG 57.727 45.455 0.00 0.00 0.00 2.85
1550 2393 5.730550 CATACTACAGCCTACAACCAAAGA 58.269 41.667 0.00 0.00 0.00 2.52
1553 2396 3.517901 AGCATACTACAGCCTACAACCAA 59.482 43.478 0.00 0.00 0.00 3.67
1554 2397 3.104512 AGCATACTACAGCCTACAACCA 58.895 45.455 0.00 0.00 0.00 3.67
1555 2398 3.821421 AGCATACTACAGCCTACAACC 57.179 47.619 0.00 0.00 0.00 3.77
1564 2407 7.591795 CCGACTGAAATTACTAGCATACTACAG 59.408 40.741 0.00 0.00 0.00 2.74
1588 2433 1.390123 CACTCGTTACAGCATGAACCG 59.610 52.381 0.00 0.00 39.69 4.44
1605 2450 3.672808 CTCTGCAGGAAAGATGAACACT 58.327 45.455 15.13 0.00 0.00 3.55
1610 2455 1.904537 TCAGCTCTGCAGGAAAGATGA 59.095 47.619 15.55 15.55 33.39 2.92
1611 2456 2.398252 TCAGCTCTGCAGGAAAGATG 57.602 50.000 15.13 13.16 0.00 2.90
1612 2457 2.570752 TCTTCAGCTCTGCAGGAAAGAT 59.429 45.455 15.13 0.00 0.00 2.40
1627 2472 7.187480 CACAATGCATAAAGTGATCTCTTCAG 58.813 38.462 17.27 5.29 34.17 3.02
1826 2671 9.930693 AAGTAAAACAAAACACCTGACATTTTA 57.069 25.926 0.00 0.00 0.00 1.52
1827 2672 8.840833 AAGTAAAACAAAACACCTGACATTTT 57.159 26.923 0.00 0.00 0.00 1.82
1828 2673 8.840833 AAAGTAAAACAAAACACCTGACATTT 57.159 26.923 0.00 0.00 0.00 2.32
1862 2707 4.237724 TCTTATGCACAGAAGAGAACACG 58.762 43.478 3.68 0.00 34.14 4.49
1888 2740 0.406361 GGACCAACCATACCCACCAA 59.594 55.000 0.00 0.00 38.79 3.67
1900 2752 1.464997 GATTGCTTGTCTCGGACCAAC 59.535 52.381 0.00 0.00 0.00 3.77
1936 2788 9.503399 AACTAGGAAGACTAAATAAACCACTTG 57.497 33.333 0.00 0.00 0.00 3.16
1960 2812 8.677148 TGCAAATCTAAGAACCATATAGGAAC 57.323 34.615 0.00 0.00 41.22 3.62
1961 2813 9.866655 AATGCAAATCTAAGAACCATATAGGAA 57.133 29.630 0.00 0.00 41.22 3.36
2064 2916 7.816995 AGATTGCAAACAAAACACAAGACTTAA 59.183 29.630 1.71 0.00 39.77 1.85
2212 3064 2.432444 GGTTTGGTTCACGGATCATGA 58.568 47.619 0.00 0.00 0.00 3.07
2214 3066 1.074727 TGGGTTTGGTTCACGGATCAT 59.925 47.619 0.00 0.00 0.00 2.45
2234 3086 3.008704 ACAAGGCTGTATTTTCTACGGGT 59.991 43.478 0.00 0.00 32.54 5.28
2345 3197 7.769220 TCAGTATAACCTAAGCAAGTAGTGTC 58.231 38.462 0.00 0.00 0.00 3.67
2981 3855 5.637387 CACCAATTTAAATAACACAGGGTGC 59.363 40.000 0.01 0.00 36.98 5.01
2984 3858 5.175127 GGCACCAATTTAAATAACACAGGG 58.825 41.667 0.01 0.00 0.00 4.45
2985 3859 5.788450 TGGCACCAATTTAAATAACACAGG 58.212 37.500 0.01 0.56 0.00 4.00
3277 4155 5.617087 GCAATAGACAGCAGCATGTATGATG 60.617 44.000 14.26 14.26 46.27 3.07
3391 4270 2.521465 CACAGTGGGGGCTTTGCA 60.521 61.111 0.00 0.00 0.00 4.08
3434 4313 3.330720 GGTGGAGGGTGTCTGGGG 61.331 72.222 0.00 0.00 0.00 4.96
3549 4428 3.887716 AGTGAATGGATAGCAAGCATTCC 59.112 43.478 0.00 6.40 32.91 3.01
3682 4561 3.695022 TTCCGCTCCGCTTACGCTC 62.695 63.158 0.00 0.00 38.22 5.03
3842 4721 9.512588 CCTCAACCTTATATGCTATTTCAGATT 57.487 33.333 0.00 0.00 0.00 2.40
3844 4723 8.034313 ACCTCAACCTTATATGCTATTTCAGA 57.966 34.615 0.00 0.00 0.00 3.27
3845 4724 8.682936 AACCTCAACCTTATATGCTATTTCAG 57.317 34.615 0.00 0.00 0.00 3.02
3919 4876 1.339535 TGCTGTGTGAACCACTGAACA 60.340 47.619 3.89 0.00 44.81 3.18
4394 5487 2.086426 CAGCGCGCTTAAGTGACGA 61.086 57.895 34.58 0.00 0.00 4.20
4412 5505 4.128139 CTGGCTGAGCATGCTCTC 57.872 61.111 39.46 30.87 43.12 3.20
4663 5767 3.880490 ACGGAAAGTTGTGCTGAAATACA 59.120 39.130 0.00 0.00 0.00 2.29
4684 5788 2.096248 CACTCCCTCTCTGGTGTCTAC 58.904 57.143 0.00 0.00 29.93 2.59
5011 6124 3.891049 ACCAGATACTTTCCCATGCTTC 58.109 45.455 0.00 0.00 0.00 3.86
5017 6130 5.954757 TGGTTTTTACCAGATACTTTCCCA 58.045 37.500 0.00 0.00 34.33 4.37
5254 6374 6.285790 ACCGAAAATTCTGAAACAAAATGC 57.714 33.333 0.00 0.00 0.00 3.56
5299 6921 1.566404 CGGTGAAAACCAAGCCAAAC 58.434 50.000 0.00 0.00 0.00 2.93
5301 6923 0.684805 ACCGGTGAAAACCAAGCCAA 60.685 50.000 6.12 0.00 0.00 4.52
5302 6924 0.684805 AACCGGTGAAAACCAAGCCA 60.685 50.000 8.52 0.00 0.00 4.75
5303 6925 0.462375 AAACCGGTGAAAACCAAGCC 59.538 50.000 8.52 0.00 0.00 4.35
5330 6952 4.574599 AATATCCGGTGGTAACTACGTC 57.425 45.455 0.00 0.00 35.21 4.34
5666 7289 2.203480 TTGGGGCAACAGGAGCAC 60.203 61.111 0.00 0.00 39.74 4.40
5762 7385 4.362279 GCATACAATACCAATGGTTGCAG 58.638 43.478 11.41 1.10 37.09 4.41
5816 7439 9.896645 ATAGACAAACACATCACTTCATATCTT 57.103 29.630 0.00 0.00 0.00 2.40
6377 8032 0.534203 TCACCAAGGTCGAAACTGCC 60.534 55.000 0.00 0.00 0.00 4.85
6391 8046 3.358111 TGTCAAAGGAACACTTCACCA 57.642 42.857 0.00 0.00 38.85 4.17
6804 8467 7.504911 AGATTTTGATGCTAGCAAGATATGGTT 59.495 33.333 23.54 0.53 40.93 3.67
6806 8469 7.450124 AGATTTTGATGCTAGCAAGATATGG 57.550 36.000 23.54 0.00 0.00 2.74
6926 8590 7.048629 TCTCAAAGTTGCATACCAAAATTCA 57.951 32.000 0.00 0.00 34.68 2.57
6935 8599 8.801715 TCAAAAAGAATCTCAAAGTTGCATAC 57.198 30.769 0.00 0.00 0.00 2.39
6969 8633 5.531287 CCTGCACAAGTAGAAAAGGTTAACT 59.469 40.000 5.42 0.00 0.00 2.24
7079 8743 1.434622 GCATCATGCTCGTGGTCTGG 61.435 60.000 1.02 0.00 40.96 3.86
7543 9231 0.249911 GAGGGGTACATCGTCCATGC 60.250 60.000 0.00 0.00 35.65 4.06
7553 9241 1.339342 GCCTTTTAAGCGAGGGGTACA 60.339 52.381 0.00 0.00 33.52 2.90
7600 9288 4.953579 GGACTAGAGGCAGGAGGAATATAG 59.046 50.000 0.00 0.00 0.00 1.31
7601 9289 4.357097 TGGACTAGAGGCAGGAGGAATATA 59.643 45.833 0.00 0.00 0.00 0.86
7602 9290 3.142977 TGGACTAGAGGCAGGAGGAATAT 59.857 47.826 0.00 0.00 0.00 1.28
7603 9291 2.518407 TGGACTAGAGGCAGGAGGAATA 59.482 50.000 0.00 0.00 0.00 1.75
7604 9292 1.292242 TGGACTAGAGGCAGGAGGAAT 59.708 52.381 0.00 0.00 0.00 3.01
7605 9293 0.710588 TGGACTAGAGGCAGGAGGAA 59.289 55.000 0.00 0.00 0.00 3.36
7681 9369 2.474410 AGGTGACACTTCCGATTTCC 57.526 50.000 5.39 0.00 0.00 3.13
7859 9547 3.428532 GGGAGGAGATACGCACCTAATA 58.571 50.000 0.00 0.00 37.74 0.98
7923 9611 0.374758 CGACCATGCACACATACTGC 59.625 55.000 0.00 0.00 33.67 4.40
8002 9693 9.656323 AAGGGAACTATTTCCTTTTAGAAAGTT 57.344 29.630 11.30 0.00 46.48 2.66
8028 9721 0.108585 GAGCACAAACACCAGAGGGA 59.891 55.000 0.00 0.00 38.05 4.20
8029 9722 1.230635 CGAGCACAAACACCAGAGGG 61.231 60.000 0.00 0.00 41.29 4.30
8030 9723 1.845809 GCGAGCACAAACACCAGAGG 61.846 60.000 0.00 0.00 0.00 3.69
8031 9724 0.882042 AGCGAGCACAAACACCAGAG 60.882 55.000 0.00 0.00 0.00 3.35
8032 9725 0.880278 GAGCGAGCACAAACACCAGA 60.880 55.000 0.00 0.00 0.00 3.86
8033 9726 1.571460 GAGCGAGCACAAACACCAG 59.429 57.895 0.00 0.00 0.00 4.00
8034 9727 2.243957 CGAGCGAGCACAAACACCA 61.244 57.895 0.00 0.00 0.00 4.17
8035 9728 2.551270 CGAGCGAGCACAAACACC 59.449 61.111 0.00 0.00 0.00 4.16
8205 9898 1.801913 CGACTCACAGGCGCAGTAC 60.802 63.158 10.83 0.00 41.27 2.73
8214 9907 1.187271 CGACGAAAACACGACTCACAG 59.813 52.381 0.00 0.00 37.03 3.66
8242 9935 4.158384 CCTTTTTACGTGTCACATGATGC 58.842 43.478 3.31 0.00 0.00 3.91
8309 10006 5.453903 CGTAAGAATCAGGAAGGACATCCAT 60.454 44.000 0.00 0.00 40.51 3.41
8344 10041 3.555956 AGATTTCCACTTACATAAGCGCG 59.444 43.478 0.00 0.00 36.79 6.86
8360 10057 5.294306 TGCTCCGTGTGATTATTCAGATTTC 59.706 40.000 0.00 0.00 30.85 2.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.