Multiple sequence alignment - TraesCS4A01G114300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G114300 chr4A 100.000 3886 0 0 1 3886 138467872 138463987 0.000000e+00 7177
1 TraesCS4A01G114300 chr4A 90.436 711 55 7 632 1337 146401760 146402462 0.000000e+00 924
2 TraesCS4A01G114300 chr4A 89.011 637 48 5 6 623 160251823 160252456 0.000000e+00 769
3 TraesCS4A01G114300 chr4A 88.627 255 10 9 177 412 181376635 181376381 3.800000e-75 292
4 TraesCS4A01G114300 chr4A 96.970 66 2 0 1 66 181376701 181376636 1.140000e-20 111
5 TraesCS4A01G114300 chr1A 96.056 3271 111 9 632 3886 255203060 255206328 0.000000e+00 5310
6 TraesCS4A01G114300 chr1A 94.739 2623 122 9 632 3239 423107159 423104538 0.000000e+00 4065
7 TraesCS4A01G114300 chr1A 94.795 2613 119 9 632 3229 423170578 423167968 0.000000e+00 4056
8 TraesCS4A01G114300 chr1A 94.644 2614 121 10 632 3229 423234273 423231663 0.000000e+00 4034
9 TraesCS4A01G114300 chr1A 94.185 2631 124 16 632 3239 423296162 423293538 0.000000e+00 3984
10 TraesCS4A01G114300 chr1A 96.200 2079 63 9 1822 3886 272648540 272650616 0.000000e+00 3387
11 TraesCS4A01G114300 chr3A 95.903 3271 117 9 632 3886 382441143 382437874 0.000000e+00 5282
12 TraesCS4A01G114300 chr3A 91.691 337 24 3 287 623 272785329 272785661 7.600000e-127 464
13 TraesCS4A01G114300 chr4D 96.602 2590 70 10 1310 3886 349448342 349445758 0.000000e+00 4279
14 TraesCS4A01G114300 chr4D 89.185 638 48 2 4 623 315083273 315082639 0.000000e+00 776
15 TraesCS4A01G114300 chr7A 95.906 2076 73 8 1822 3886 269297622 269299696 0.000000e+00 3352
16 TraesCS4A01G114300 chr3B 91.162 1041 81 7 632 1667 309750469 309751503 0.000000e+00 1402
17 TraesCS4A01G114300 chr3B 91.691 337 24 3 287 623 349291999 349291667 7.600000e-127 464
18 TraesCS4A01G114300 chr3B 93.907 279 16 1 352 630 428202507 428202784 1.670000e-113 420
19 TraesCS4A01G114300 chr3B 94.149 188 11 0 1 188 428202320 428202507 1.770000e-73 287
20 TraesCS4A01G114300 chr6A 90.155 711 58 6 632 1337 279747192 279747895 0.000000e+00 915
21 TraesCS4A01G114300 chr6A 95.484 465 3 1 186 632 230691636 230692100 0.000000e+00 726
22 TraesCS4A01G114300 chr6D 92.391 644 17 7 21 632 93469419 93470062 0.000000e+00 889
23 TraesCS4A01G114300 chr4B 91.705 651 35 3 1 632 467154152 467154802 0.000000e+00 885
24 TraesCS4A01G114300 chr6B 91.692 650 35 2 1 632 203333948 203334596 0.000000e+00 883
25 TraesCS4A01G114300 chr2B 86.830 653 49 20 1 630 204767880 204767242 0.000000e+00 695
26 TraesCS4A01G114300 chr2B 90.250 400 21 6 1 382 672787632 672788031 1.250000e-139 507
27 TraesCS4A01G114300 chr2B 84.520 323 44 3 1313 1632 180610055 180609736 8.100000e-82 315


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G114300 chr4A 138463987 138467872 3885 True 7177 7177 100.000 1 3886 1 chr4A.!!$R1 3885
1 TraesCS4A01G114300 chr4A 146401760 146402462 702 False 924 924 90.436 632 1337 1 chr4A.!!$F1 705
2 TraesCS4A01G114300 chr4A 160251823 160252456 633 False 769 769 89.011 6 623 1 chr4A.!!$F2 617
3 TraesCS4A01G114300 chr1A 255203060 255206328 3268 False 5310 5310 96.056 632 3886 1 chr1A.!!$F1 3254
4 TraesCS4A01G114300 chr1A 423104538 423107159 2621 True 4065 4065 94.739 632 3239 1 chr1A.!!$R1 2607
5 TraesCS4A01G114300 chr1A 423167968 423170578 2610 True 4056 4056 94.795 632 3229 1 chr1A.!!$R2 2597
6 TraesCS4A01G114300 chr1A 423231663 423234273 2610 True 4034 4034 94.644 632 3229 1 chr1A.!!$R3 2597
7 TraesCS4A01G114300 chr1A 423293538 423296162 2624 True 3984 3984 94.185 632 3239 1 chr1A.!!$R4 2607
8 TraesCS4A01G114300 chr1A 272648540 272650616 2076 False 3387 3387 96.200 1822 3886 1 chr1A.!!$F2 2064
9 TraesCS4A01G114300 chr3A 382437874 382441143 3269 True 5282 5282 95.903 632 3886 1 chr3A.!!$R1 3254
10 TraesCS4A01G114300 chr4D 349445758 349448342 2584 True 4279 4279 96.602 1310 3886 1 chr4D.!!$R2 2576
11 TraesCS4A01G114300 chr4D 315082639 315083273 634 True 776 776 89.185 4 623 1 chr4D.!!$R1 619
12 TraesCS4A01G114300 chr7A 269297622 269299696 2074 False 3352 3352 95.906 1822 3886 1 chr7A.!!$F1 2064
13 TraesCS4A01G114300 chr3B 309750469 309751503 1034 False 1402 1402 91.162 632 1667 1 chr3B.!!$F1 1035
14 TraesCS4A01G114300 chr6A 279747192 279747895 703 False 915 915 90.155 632 1337 1 chr6A.!!$F2 705
15 TraesCS4A01G114300 chr6D 93469419 93470062 643 False 889 889 92.391 21 632 1 chr6D.!!$F1 611
16 TraesCS4A01G114300 chr4B 467154152 467154802 650 False 885 885 91.705 1 632 1 chr4B.!!$F1 631
17 TraesCS4A01G114300 chr6B 203333948 203334596 648 False 883 883 91.692 1 632 1 chr6B.!!$F1 631
18 TraesCS4A01G114300 chr2B 204767242 204767880 638 True 695 695 86.830 1 630 1 chr2B.!!$R2 629

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
522 544 0.907486 CAGAGGGTCCAGCATCTGAA 59.093 55.000 13.78 0.0 41.35 3.02 F
1061 1094 4.101790 GTGCATCCAACGCCACCG 62.102 66.667 0.00 0.0 41.14 4.94 F
1337 1370 0.833287 TGCAGCATCCTCTCCTAACC 59.167 55.000 0.00 0.0 0.00 2.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1337 1370 1.662629 CCATGAAGTGCAGTAGAAGCG 59.337 52.381 0.0 0.0 33.85 4.68 R
2803 2872 1.770061 TCTGTAAACCTTGAACGGGGT 59.230 47.619 0.0 0.0 37.44 4.95 R
3166 3235 4.876107 GCGGACTAAAATTCAGGAGAATCA 59.124 41.667 0.0 0.0 43.52 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
150 152 4.669206 TGCCATCATTTATTTTCCGCAT 57.331 36.364 0.00 0.00 0.00 4.73
221 223 3.316071 TGCACGCCATTCATTCATTTT 57.684 38.095 0.00 0.00 0.00 1.82
227 229 6.917477 GCACGCCATTCATTCATTTTCTATAA 59.083 34.615 0.00 0.00 0.00 0.98
436 458 1.328279 CGCCCCTTTCTTTCTTGGTT 58.672 50.000 0.00 0.00 0.00 3.67
448 470 4.398044 TCTTTCTTGGTTGTGTGGTCTTTC 59.602 41.667 0.00 0.00 0.00 2.62
465 487 7.492344 GTGGTCTTTCTTGTGAATGAAAAATGT 59.508 33.333 0.00 0.00 37.85 2.71
486 508 6.003234 TGTTTTGTCTCGACTTGTTTGAAA 57.997 33.333 0.00 0.00 0.00 2.69
492 514 8.827177 TTGTCTCGACTTGTTTGAAATAGTAT 57.173 30.769 0.00 0.00 0.00 2.12
521 543 1.620739 GCAGAGGGTCCAGCATCTGA 61.621 60.000 21.23 0.00 41.35 3.27
522 544 0.907486 CAGAGGGTCCAGCATCTGAA 59.093 55.000 13.78 0.00 41.35 3.02
563 585 8.134202 TCACTTTCAAGACTATGTGGATCTTA 57.866 34.615 0.00 0.00 31.47 2.10
564 586 8.762645 TCACTTTCAAGACTATGTGGATCTTAT 58.237 33.333 0.00 0.00 31.47 1.73
565 587 9.039870 CACTTTCAAGACTATGTGGATCTTATC 57.960 37.037 0.00 0.00 31.47 1.75
566 588 8.762645 ACTTTCAAGACTATGTGGATCTTATCA 58.237 33.333 0.00 0.00 31.47 2.15
567 589 9.775854 CTTTCAAGACTATGTGGATCTTATCAT 57.224 33.333 0.00 0.00 31.47 2.45
571 593 9.597170 CAAGACTATGTGGATCTTATCATATGG 57.403 37.037 2.13 0.00 31.47 2.74
572 594 9.552695 AAGACTATGTGGATCTTATCATATGGA 57.447 33.333 2.13 0.00 30.88 3.41
573 595 9.552695 AGACTATGTGGATCTTATCATATGGAA 57.447 33.333 2.13 0.00 0.00 3.53
574 596 9.814899 GACTATGTGGATCTTATCATATGGAAG 57.185 37.037 2.13 7.33 0.00 3.46
575 597 8.766476 ACTATGTGGATCTTATCATATGGAAGG 58.234 37.037 14.57 1.28 0.00 3.46
576 598 7.579940 ATGTGGATCTTATCATATGGAAGGT 57.420 36.000 14.57 9.90 0.00 3.50
577 599 8.685257 ATGTGGATCTTATCATATGGAAGGTA 57.315 34.615 14.57 2.13 0.00 3.08
578 600 7.907389 TGTGGATCTTATCATATGGAAGGTAC 58.093 38.462 14.57 10.81 0.00 3.34
579 601 7.038302 TGTGGATCTTATCATATGGAAGGTACC 60.038 40.741 2.73 2.73 0.00 3.34
580 602 7.181125 GTGGATCTTATCATATGGAAGGTACCT 59.819 40.741 9.21 9.21 0.00 3.08
581 603 8.406643 TGGATCTTATCATATGGAAGGTACCTA 58.593 37.037 16.67 0.00 0.00 3.08
582 604 9.268282 GGATCTTATCATATGGAAGGTACCTAA 57.732 37.037 16.67 4.45 0.00 2.69
616 638 9.453572 ACATTCAAGACTAGCTTTATTGAATCA 57.546 29.630 19.86 3.83 44.55 2.57
617 639 9.713740 CATTCAAGACTAGCTTTATTGAATCAC 57.286 33.333 19.86 0.00 44.55 3.06
618 640 8.846943 TTCAAGACTAGCTTTATTGAATCACA 57.153 30.769 11.70 0.00 35.55 3.58
619 641 8.846943 TCAAGACTAGCTTTATTGAATCACAA 57.153 30.769 0.00 0.00 37.55 3.33
620 642 9.453572 TCAAGACTAGCTTTATTGAATCACAAT 57.546 29.630 0.00 0.00 42.28 2.71
703 725 6.258354 TGGAGTTCTATTGGTCCTAACTACA 58.742 40.000 0.00 0.00 38.39 2.74
808 837 9.846725 TTCCATCCATGTATTTATAGTACCCTA 57.153 33.333 0.00 0.00 0.00 3.53
1061 1094 4.101790 GTGCATCCAACGCCACCG 62.102 66.667 0.00 0.00 41.14 4.94
1266 1299 7.627298 TCTACTTTAGTGTGGTCTGAGATAC 57.373 40.000 0.00 0.00 0.00 2.24
1337 1370 0.833287 TGCAGCATCCTCTCCTAACC 59.167 55.000 0.00 0.00 0.00 2.85
1414 1448 2.901249 GCTCTACGCAACCATTTCCTA 58.099 47.619 0.00 0.00 38.92 2.94
1424 1458 6.038271 ACGCAACCATTTCCTATGATTAACTC 59.962 38.462 0.00 0.00 0.00 3.01
1453 1488 2.612200 CGAGAGCCGTTGGTCAAAA 58.388 52.632 0.00 0.00 41.53 2.44
1460 1495 4.583073 AGAGCCGTTGGTCAAAATAGTTTT 59.417 37.500 0.00 0.00 41.53 2.43
1519 1556 9.211485 CTATGTTCATAGATCATGTTGTATGCA 57.789 33.333 13.53 8.86 35.96 3.96
1545 1582 3.199946 AGGATGCTCCCGTCTTTATTCAA 59.800 43.478 0.00 0.00 37.19 2.69
1571 1608 3.309961 TCAAGCAGTTTGTTTGTGCAA 57.690 38.095 5.72 0.00 39.23 4.08
1632 1669 2.158534 TGGGTTTTGCTACTGGTGACAT 60.159 45.455 0.00 0.00 41.51 3.06
1759 1796 4.920640 TTTACCGTTCTTGATTTTGGCA 57.079 36.364 0.00 0.00 0.00 4.92
1802 1839 1.236616 TTGGCTGTCAATGCTCACCG 61.237 55.000 0.00 0.00 0.00 4.94
1853 1890 7.447374 TTTAGTCCAACATTTCCAGTATGTG 57.553 36.000 0.00 0.00 36.41 3.21
1993 2039 6.869315 TTTGGTTTCTAATGTTCATGTCGA 57.131 33.333 0.00 0.00 0.00 4.20
2123 2184 1.937899 CTCGGAACAACCTTTCGTGTT 59.062 47.619 0.00 0.00 36.31 3.32
2344 2407 9.897744 CTCATTTTTCAGAATTTGTAGTAGCAA 57.102 29.630 0.00 0.00 0.00 3.91
2448 2511 5.930135 ACTGGTGTTTAGAGATTTCAGTGT 58.070 37.500 0.00 0.00 33.63 3.55
2492 2555 1.817099 GGGCTTCGAGATGCACCAG 60.817 63.158 12.05 0.00 33.64 4.00
2516 2579 8.834465 CAGGAGGATTGAAACAAGTCTTATATG 58.166 37.037 0.00 0.00 0.00 1.78
2522 2585 6.569127 TGAAACAAGTCTTATATGGGGCTA 57.431 37.500 0.00 0.00 0.00 3.93
2803 2872 2.576191 AGGCTTTGGAAGGTACTATGCA 59.424 45.455 0.00 0.00 38.49 3.96
3043 3112 5.997746 ACTTGAGTAAATTGTGCAGCTCTTA 59.002 36.000 0.00 0.00 0.00 2.10
3051 3120 3.475566 TGTGCAGCTCTTACTTGAGTT 57.524 42.857 0.00 0.00 36.51 3.01
3136 3205 5.205056 TCCTTATGCCCATTTTAAACCGAT 58.795 37.500 0.00 0.00 0.00 4.18
3165 3234 8.543774 CCGACTTTACATCATTTCTATTCTCAC 58.456 37.037 0.00 0.00 0.00 3.51
3166 3235 9.307121 CGACTTTACATCATTTCTATTCTCACT 57.693 33.333 0.00 0.00 0.00 3.41
3290 3361 0.813184 TCGGCGTTTCGATTCCTACT 59.187 50.000 6.85 0.00 33.92 2.57
3299 3370 6.726230 CGTTTCGATTCCTACTAATCTCTCA 58.274 40.000 0.00 0.00 34.34 3.27
3411 3482 4.395959 TCGTTTCAACTTAGTCAGGTGT 57.604 40.909 0.00 0.00 41.61 4.16
3435 3506 3.279434 GCCCAAGGATGTTATTTCTCGT 58.721 45.455 0.00 0.00 0.00 4.18
3510 3581 9.118300 CATTGGCTTAGAAGATAGTGAGAATTT 57.882 33.333 0.00 0.00 0.00 1.82
3520 3591 9.103861 GAAGATAGTGAGAATTTCCTGGTTAAG 57.896 37.037 0.00 0.00 0.00 1.85
3541 3612 4.542697 AGTGAGGAAAACTGGGCTAAAAA 58.457 39.130 0.00 0.00 0.00 1.94
3639 3710 6.367421 CGAACAATTGACAAATCCGACTTTA 58.633 36.000 13.59 0.00 0.00 1.85
3705 3776 0.034477 CCCTCCGCAAATAACCACCT 60.034 55.000 0.00 0.00 0.00 4.00
3749 3820 2.978978 TGGACTCCCTCAGAAATCAACA 59.021 45.455 0.00 0.00 0.00 3.33
3759 3830 2.825532 CAGAAATCAACACCCCCGAAAT 59.174 45.455 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 85 0.320421 GAACTCCGTTGTGCAGCCTA 60.320 55.000 0.00 0.00 0.00 3.93
150 152 2.978978 TCAGGTTCCTCATTCCAAGTCA 59.021 45.455 0.00 0.00 0.00 3.41
221 223 7.440556 GCAAAGCACAGATCAAGATCTTATAGA 59.559 37.037 7.86 1.80 45.31 1.98
227 229 3.682696 TGCAAAGCACAGATCAAGATCT 58.317 40.909 6.75 6.75 40.30 2.75
436 458 4.522114 TCATTCACAAGAAAGACCACACA 58.478 39.130 0.00 0.00 37.29 3.72
448 470 8.051909 CGAGACAAAACATTTTTCATTCACAAG 58.948 33.333 0.00 0.00 0.00 3.16
465 487 7.981142 ACTATTTCAAACAAGTCGAGACAAAA 58.019 30.769 5.99 0.00 0.00 2.44
497 519 0.991146 TGCTGGACCCTCTGCAAATA 59.009 50.000 0.00 0.00 38.36 1.40
505 527 1.198713 TCTTCAGATGCTGGACCCTC 58.801 55.000 0.00 0.00 31.51 4.30
508 530 3.340814 TTCTTCTTCAGATGCTGGACC 57.659 47.619 0.00 0.00 31.51 4.46
545 567 9.597170 CCATATGATAAGATCCACATAGTCTTG 57.403 37.037 3.65 0.00 34.33 3.02
590 612 9.453572 TGATTCAATAAAGCTAGTCTTGAATGT 57.546 29.630 21.45 8.16 43.12 2.71
591 613 9.713740 GTGATTCAATAAAGCTAGTCTTGAATG 57.286 33.333 21.45 8.10 43.12 2.67
592 614 9.453572 TGTGATTCAATAAAGCTAGTCTTGAAT 57.546 29.630 18.64 18.64 44.76 2.57
593 615 8.846943 TGTGATTCAATAAAGCTAGTCTTGAA 57.153 30.769 12.96 12.96 39.39 2.69
594 616 8.846943 TTGTGATTCAATAAAGCTAGTCTTGA 57.153 30.769 0.00 0.00 34.67 3.02
615 637 8.908786 AACTATCCATCCACAATACTATTGTG 57.091 34.615 25.83 25.83 46.79 3.33
621 643 9.396022 CAAGTTTAACTATCCATCCACAATACT 57.604 33.333 0.00 0.00 0.00 2.12
622 644 8.621286 CCAAGTTTAACTATCCATCCACAATAC 58.379 37.037 0.00 0.00 0.00 1.89
623 645 8.333235 ACCAAGTTTAACTATCCATCCACAATA 58.667 33.333 0.00 0.00 0.00 1.90
624 646 7.182060 ACCAAGTTTAACTATCCATCCACAAT 58.818 34.615 0.00 0.00 0.00 2.71
625 647 6.548321 ACCAAGTTTAACTATCCATCCACAA 58.452 36.000 0.00 0.00 0.00 3.33
626 648 6.134535 ACCAAGTTTAACTATCCATCCACA 57.865 37.500 0.00 0.00 0.00 4.17
780 807 9.396022 GGGTACTATAAATACATGGATGGAATG 57.604 37.037 0.00 0.00 0.00 2.67
808 837 2.219875 ACCACTGCTGCAGCTACCT 61.220 57.895 36.61 15.22 42.66 3.08
970 1003 2.763710 TGCCGCCTATCCAGCTCA 60.764 61.111 0.00 0.00 0.00 4.26
1061 1094 4.729918 CCCCAGGACCAGCAGCAC 62.730 72.222 0.00 0.00 0.00 4.40
1134 1167 3.028130 ACACGGGAAAGGAACAAACAAT 58.972 40.909 0.00 0.00 0.00 2.71
1337 1370 1.662629 CCATGAAGTGCAGTAGAAGCG 59.337 52.381 0.00 0.00 33.85 4.68
1492 1529 9.212641 GCATACAACATGATCTATGAACATAGT 57.787 33.333 17.64 8.44 41.12 2.12
1545 1582 5.922544 GCACAAACAAACTGCTTGAATCTAT 59.077 36.000 0.00 0.00 38.50 1.98
1571 1608 2.747989 CTGATGTCAGCAGCAAGATTGT 59.252 45.455 4.94 0.00 40.78 2.71
1632 1669 3.255888 CGCACTAGCTACTATTCATGGGA 59.744 47.826 0.00 0.00 39.10 4.37
1759 1796 4.897670 CCAAGCAAATGAAGGAATATCCCT 59.102 41.667 0.00 0.00 37.19 4.20
1853 1890 8.485976 AATTAACACTGATAGCAGAAGAAGAC 57.514 34.615 16.32 0.00 45.17 3.01
2013 2061 9.621629 CCAGATTACAATATAAACTGGTTACCA 57.378 33.333 3.29 3.29 40.46 3.25
2123 2184 5.074804 TCAGGAAACGAGATAATATCGGGA 58.925 41.667 5.08 0.00 44.36 5.14
2377 2440 1.992557 TCCTGCACTGAAACCCCTAAT 59.007 47.619 0.00 0.00 0.00 1.73
2448 2511 3.744238 TCGAAACTGGAACATCACTCA 57.256 42.857 0.00 0.00 38.20 3.41
2492 2555 7.229506 CCCATATAAGACTTGTTTCAATCCTCC 59.770 40.741 0.00 0.00 0.00 4.30
2516 2579 9.758651 CCAAAAACATAATAATTTAGTAGCCCC 57.241 33.333 0.00 0.00 0.00 5.80
2803 2872 1.770061 TCTGTAAACCTTGAACGGGGT 59.230 47.619 0.00 0.00 37.44 4.95
3114 3183 4.993029 TCGGTTTAAAATGGGCATAAGG 57.007 40.909 0.00 0.00 0.00 2.69
3136 3205 8.701895 AGAATAGAAATGATGTAAAGTCGGGTA 58.298 33.333 0.00 0.00 0.00 3.69
3165 3234 5.007136 GCGGACTAAAATTCAGGAGAATCAG 59.993 44.000 0.00 0.00 43.52 2.90
3166 3235 4.876107 GCGGACTAAAATTCAGGAGAATCA 59.124 41.667 0.00 0.00 43.52 2.57
3167 3236 5.119694 AGCGGACTAAAATTCAGGAGAATC 58.880 41.667 0.00 0.00 43.52 2.52
3241 3312 6.652481 TGACCAAATCACAACAACAAAATTGT 59.348 30.769 0.00 0.00 39.63 2.71
3290 3361 6.489700 TCACTTGCCAAACAAATGAGAGATTA 59.510 34.615 0.00 0.00 39.47 1.75
3411 3482 4.023291 GAGAAATAACATCCTTGGGCCAA 58.977 43.478 19.68 19.68 0.00 4.52
3463 3534 5.612725 TGAAAATGGAAGTCTTTTGCCTT 57.387 34.783 0.00 0.00 0.00 4.35
3510 3581 4.445735 CCAGTTTTCCTCACTTAACCAGGA 60.446 45.833 0.00 0.00 34.31 3.86
3520 3591 4.098807 TGTTTTTAGCCCAGTTTTCCTCAC 59.901 41.667 0.00 0.00 0.00 3.51
3541 3612 3.892284 TGTGTGGGTTGAGTTGTATTGT 58.108 40.909 0.00 0.00 0.00 2.71
3705 3776 5.302823 CAGGTGGTGATGATGATAGACACTA 59.697 44.000 0.00 0.00 0.00 2.74


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.