Multiple sequence alignment - TraesCS4A01G114000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G114000 chr4A 100.000 2779 0 0 1 2779 138315016 138312238 0.000000e+00 5132.0
1 TraesCS4A01G114000 chr4A 90.678 118 9 2 1957 2073 137968597 137968481 3.710000e-34 156.0
2 TraesCS4A01G114000 chr4A 90.179 112 10 1 2669 2779 225302051 225301940 8.020000e-31 145.0
3 TraesCS4A01G114000 chr4B 95.272 1269 45 7 644 1899 413013375 413014641 0.000000e+00 1997.0
4 TraesCS4A01G114000 chr4B 93.197 588 23 3 1 584 10399257 10398683 0.000000e+00 848.0
5 TraesCS4A01G114000 chr4B 90.476 189 15 3 2105 2291 413014799 413014986 2.140000e-61 246.0
6 TraesCS4A01G114000 chr4B 84.158 202 11 6 38 235 11729531 11729715 2.840000e-40 176.0
7 TraesCS4A01G114000 chr4B 90.909 121 6 4 1957 2073 413113517 413113636 1.030000e-34 158.0
8 TraesCS4A01G114000 chr4B 94.681 94 0 3 1981 2074 413014706 413014794 1.040000e-29 141.0
9 TraesCS4A01G114000 chr4B 85.507 138 12 4 2535 2672 413015104 413015233 1.340000e-28 137.0
10 TraesCS4A01G114000 chr4B 97.619 42 1 0 1 42 11729607 11729648 3.840000e-09 73.1
11 TraesCS4A01G114000 chr4D 94.297 754 25 9 1335 2080 334967413 334968156 0.000000e+00 1138.0
12 TraesCS4A01G114000 chr4D 91.564 652 42 10 604 1244 334966710 334967359 0.000000e+00 887.0
13 TraesCS4A01G114000 chr4D 87.321 489 36 9 118 584 465755146 465754662 1.130000e-148 536.0
14 TraesCS4A01G114000 chr4D 92.520 254 15 4 340 592 465755371 465755621 7.320000e-96 361.0
15 TraesCS4A01G114000 chr4D 91.954 174 10 4 2113 2284 334968160 334968331 9.950000e-60 241.0
16 TraesCS4A01G114000 chr4D 92.381 105 8 0 2675 2779 223652696 223652592 1.720000e-32 150.0
17 TraesCS4A01G114000 chr4D 85.385 130 4 3 38 165 465755303 465755187 1.350000e-23 121.0
18 TraesCS4A01G114000 chr4D 94.828 58 3 0 1 58 465755227 465755170 1.060000e-14 91.6
19 TraesCS4A01G114000 chr2B 97.133 593 8 3 1 584 655302714 655302122 0.000000e+00 992.0
20 TraesCS4A01G114000 chr3D 83.940 604 38 22 1 583 141591035 141591600 8.820000e-145 523.0
21 TraesCS4A01G114000 chr3D 83.444 604 42 22 1 584 301337202 301336637 2.470000e-140 508.0
22 TraesCS4A01G114000 chr3D 83.306 605 40 27 1 583 141403115 141403680 4.130000e-138 501.0
23 TraesCS4A01G114000 chr3D 82.123 537 36 20 1 517 141360044 141360540 3.330000e-109 405.0
24 TraesCS4A01G114000 chr3D 90.461 304 16 5 300 592 141359953 141359652 3.360000e-104 388.0
25 TraesCS4A01G114000 chr3D 94.094 254 11 4 340 592 301337346 301337596 1.560000e-102 383.0
26 TraesCS4A01G114000 chr3D 94.024 251 12 3 343 592 141402968 141402720 7.270000e-101 377.0
27 TraesCS4A01G114000 chr3D 93.625 251 13 3 343 592 141590888 141590640 3.380000e-99 372.0
28 TraesCS4A01G114000 chr3D 94.231 104 6 0 2676 2779 517562940 517563043 2.860000e-35 159.0
29 TraesCS4A01G114000 chr3D 92.661 109 7 1 2671 2779 600872448 600872555 3.710000e-34 156.0
30 TraesCS4A01G114000 chr3D 93.269 104 7 0 2676 2779 602567637 602567740 1.330000e-33 154.0
31 TraesCS4A01G114000 chr3D 93.269 104 7 0 2676 2779 602601977 602602080 1.330000e-33 154.0
32 TraesCS4A01G114000 chr3D 86.154 130 3 3 38 165 141403039 141403155 2.910000e-25 126.0
33 TraesCS4A01G114000 chr3D 86.154 130 3 3 38 165 141590959 141591075 2.910000e-25 126.0
34 TraesCS4A01G114000 chr3D 85.385 130 4 3 38 165 141359968 141360084 1.350000e-23 121.0
35 TraesCS4A01G114000 chr3D 85.385 130 4 3 38 165 301337278 301337162 1.350000e-23 121.0
36 TraesCS4A01G114000 chr7D 81.636 550 36 19 1 530 87187436 87187940 2.010000e-106 396.0
37 TraesCS4A01G114000 chr7D 93.200 250 14 3 343 591 87187289 87187042 5.660000e-97 364.0
38 TraesCS4A01G114000 chr7D 92.308 104 8 0 2676 2779 569852334 569852437 6.200000e-32 148.0
39 TraesCS4A01G114000 chr7D 85.385 130 4 3 38 165 87187360 87187476 1.350000e-23 121.0
40 TraesCS4A01G114000 chr7B 93.878 245 13 2 1271 1513 592674071 592674315 4.370000e-98 368.0
41 TraesCS4A01G114000 chr7B 93.061 245 15 2 1271 1513 619426441 619426197 9.470000e-95 357.0
42 TraesCS4A01G114000 chr5D 81.424 323 23 16 38 340 524486225 524485920 2.150000e-56 230.0
43 TraesCS4A01G114000 chr2D 94.118 102 6 0 2676 2777 139801931 139802032 3.710000e-34 156.0
44 TraesCS4A01G114000 chr1A 93.333 105 7 0 2675 2779 303130065 303129961 3.710000e-34 156.0
45 TraesCS4A01G114000 chr1A 96.591 88 2 1 1989 2076 372942313 372942227 8.020000e-31 145.0
46 TraesCS4A01G114000 chr1A 95.349 86 2 2 2000 2085 132795534 132795451 4.830000e-28 135.0
47 TraesCS4A01G114000 chr1A 94.253 87 3 2 2000 2086 349361998 349361914 6.250000e-27 132.0
48 TraesCS4A01G114000 chr1D 96.591 88 1 2 1989 2076 121236924 121236839 8.020000e-31 145.0
49 TraesCS4A01G114000 chr1B 96.591 88 2 1 1989 2076 403098311 403098225 8.020000e-31 145.0
50 TraesCS4A01G114000 chr1B 95.506 89 2 2 2000 2088 376074314 376074228 1.040000e-29 141.0
51 TraesCS4A01G114000 chr1B 90.909 99 5 4 1989 2086 184194016 184193921 2.250000e-26 130.0
52 TraesCS4A01G114000 chr5A 92.784 97 3 3 2000 2093 18959478 18959383 1.340000e-28 137.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G114000 chr4A 138312238 138315016 2778 True 5132.000000 5132 100.0000 1 2779 1 chr4A.!!$R2 2778
1 TraesCS4A01G114000 chr4B 10398683 10399257 574 True 848.000000 848 93.1970 1 584 1 chr4B.!!$R1 583
2 TraesCS4A01G114000 chr4B 413013375 413015233 1858 False 630.250000 1997 91.4840 644 2672 4 chr4B.!!$F3 2028
3 TraesCS4A01G114000 chr4D 334966710 334968331 1621 False 755.333333 1138 92.6050 604 2284 3 chr4D.!!$F2 1680
4 TraesCS4A01G114000 chr4D 465754662 465755303 641 True 249.533333 536 89.1780 1 584 3 chr4D.!!$R2 583
5 TraesCS4A01G114000 chr2B 655302122 655302714 592 True 992.000000 992 97.1330 1 584 1 chr2B.!!$R1 583
6 TraesCS4A01G114000 chr3D 141590959 141591600 641 False 324.500000 523 85.0470 1 583 2 chr3D.!!$F8 582
7 TraesCS4A01G114000 chr3D 301336637 301337278 641 True 314.500000 508 84.4145 1 584 2 chr3D.!!$R4 583
8 TraesCS4A01G114000 chr3D 141403039 141403680 641 False 313.500000 501 84.7300 1 583 2 chr3D.!!$F7 582
9 TraesCS4A01G114000 chr3D 141359968 141360540 572 False 263.000000 405 83.7540 1 517 2 chr3D.!!$F6 516
10 TraesCS4A01G114000 chr7D 87187360 87187940 580 False 258.500000 396 83.5105 1 530 2 chr7D.!!$F2 529

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
610 731 0.108585 AACTCTGGGCGACACACATT 59.891 50.0 0.0 0.0 0.0 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2412 2616 0.02811 GCATCGTCTCAAAATCGGCC 59.972 55.0 0.0 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 158 9.868277 TTTCATTGTTCAATTCTGTACAAAGTT 57.132 25.926 0.00 0.00 43.41 2.66
82 159 8.854979 TCATTGTTCAATTCTGTACAAAGTTG 57.145 30.769 0.00 0.00 43.41 3.16
83 160 8.465999 TCATTGTTCAATTCTGTACAAAGTTGT 58.534 29.630 4.57 1.75 43.41 3.32
84 161 8.533965 CATTGTTCAATTCTGTACAAAGTTGTG 58.466 33.333 6.94 0.00 43.41 3.33
85 162 6.033341 TGTTCAATTCTGTACAAAGTTGTGC 58.967 36.000 6.94 6.15 42.31 4.57
86 163 5.181690 TCAATTCTGTACAAAGTTGTGCC 57.818 39.130 6.94 0.00 42.16 5.01
87 164 4.642437 TCAATTCTGTACAAAGTTGTGCCA 59.358 37.500 6.94 3.18 42.16 4.92
88 165 5.126222 TCAATTCTGTACAAAGTTGTGCCAA 59.874 36.000 6.94 2.33 42.16 4.52
89 166 5.590530 ATTCTGTACAAAGTTGTGCCAAA 57.409 34.783 6.94 3.53 42.16 3.28
90 167 5.392767 TTCTGTACAAAGTTGTGCCAAAA 57.607 34.783 6.94 0.00 42.16 2.44
91 168 4.739195 TCTGTACAAAGTTGTGCCAAAAC 58.261 39.130 6.94 0.00 42.16 2.43
92 169 4.218635 TCTGTACAAAGTTGTGCCAAAACA 59.781 37.500 6.94 1.67 42.16 2.83
93 170 4.238514 TGTACAAAGTTGTGCCAAAACAC 58.761 39.130 6.94 0.00 42.16 3.32
202 292 7.598493 GGCAAAATTCACAACATGTAATACAGT 59.402 33.333 0.00 0.00 0.00 3.55
350 463 5.046529 CACTGTTATCTCTATGCCTGACAC 58.953 45.833 0.00 0.00 0.00 3.67
521 637 6.870971 AGCTGACCAAAAAGACGTATTTTA 57.129 33.333 20.16 4.68 32.20 1.52
584 705 4.826183 GTGACTACCGGTGATATTACCTCT 59.174 45.833 19.93 2.30 38.62 3.69
585 706 5.301298 GTGACTACCGGTGATATTACCTCTT 59.699 44.000 19.93 1.75 38.62 2.85
586 707 6.488006 GTGACTACCGGTGATATTACCTCTTA 59.512 42.308 19.93 2.73 38.62 2.10
587 708 7.013655 GTGACTACCGGTGATATTACCTCTTAA 59.986 40.741 19.93 0.00 38.62 1.85
588 709 7.560991 TGACTACCGGTGATATTACCTCTTAAA 59.439 37.037 19.93 0.00 38.62 1.52
589 710 8.310122 ACTACCGGTGATATTACCTCTTAAAA 57.690 34.615 19.93 0.00 38.62 1.52
590 711 8.761689 ACTACCGGTGATATTACCTCTTAAAAA 58.238 33.333 19.93 0.00 38.62 1.94
606 727 3.487576 AAAAACTCTGGGCGACACA 57.512 47.368 0.00 0.00 0.00 3.72
610 731 0.108585 AACTCTGGGCGACACACATT 59.891 50.000 0.00 0.00 0.00 2.71
622 743 2.100584 GACACACATTGCTCCCAAACAA 59.899 45.455 0.00 0.00 34.05 2.83
632 753 4.272489 TGCTCCCAAACAATCTTCCATAG 58.728 43.478 0.00 0.00 0.00 2.23
635 756 5.630069 GCTCCCAAACAATCTTCCATAGAGA 60.630 44.000 0.00 0.00 36.02 3.10
636 757 6.387192 TCCCAAACAATCTTCCATAGAGAA 57.613 37.500 0.00 0.00 36.02 2.87
643 764 6.825610 ACAATCTTCCATAGAGAATGAGGAC 58.174 40.000 0.00 0.00 37.86 3.85
668 789 5.292589 CCATTAGTACCACATACAACCGTTC 59.707 44.000 0.00 0.00 36.09 3.95
818 941 1.149361 TTCACGCGGTAATGGATCGC 61.149 55.000 12.47 0.00 45.15 4.58
894 1018 0.745845 CACAATTCCCTCCTCCTGCG 60.746 60.000 0.00 0.00 0.00 5.18
895 1019 0.909610 ACAATTCCCTCCTCCTGCGA 60.910 55.000 0.00 0.00 0.00 5.10
896 1020 0.253044 CAATTCCCTCCTCCTGCGAA 59.747 55.000 0.00 0.00 0.00 4.70
912 1036 0.852777 CGAACGCATCGTATCCCAAG 59.147 55.000 3.26 0.00 46.52 3.61
1103 1235 0.737715 GAGGTCCGTGCATGAGACAC 60.738 60.000 21.51 14.23 31.99 3.67
1131 1268 6.872547 TCTCATCAATCTTCTGTTCTGTTCTG 59.127 38.462 0.00 0.00 0.00 3.02
1367 1530 1.005630 GCAGTCGCTCTCAACCAGT 60.006 57.895 0.00 0.00 34.30 4.00
1394 1557 0.037590 ACGGAGCAAAATGGCTGGTA 59.962 50.000 0.00 0.00 45.99 3.25
1454 1617 3.382111 CTCCAGGAGCACGACCTT 58.618 61.111 2.60 0.00 35.35 3.50
1746 1909 2.353607 GCGAGGCATACGAGGTCG 60.354 66.667 0.00 0.00 46.33 4.79
1836 2003 6.064846 ACCGAAATAATTGATCATGTGCTC 57.935 37.500 0.00 0.00 0.00 4.26
1839 2006 6.458615 CCGAAATAATTGATCATGTGCTCACA 60.459 38.462 5.08 5.08 46.44 3.58
1881 2048 4.590222 GGATGCTTGTAAATGGGGATTCAT 59.410 41.667 0.00 0.00 0.00 2.57
1918 2085 5.356190 CAGCTCATATGGTTTCTGTGTGAAT 59.644 40.000 2.13 0.00 34.24 2.57
1919 2086 5.356190 AGCTCATATGGTTTCTGTGTGAATG 59.644 40.000 2.13 0.00 34.24 2.67
1920 2087 5.124457 GCTCATATGGTTTCTGTGTGAATGT 59.876 40.000 2.13 0.00 34.24 2.71
1921 2088 6.499234 TCATATGGTTTCTGTGTGAATGTG 57.501 37.500 2.13 0.00 34.24 3.21
1922 2089 6.003326 TCATATGGTTTCTGTGTGAATGTGT 58.997 36.000 2.13 0.00 34.24 3.72
1923 2090 4.572985 ATGGTTTCTGTGTGAATGTGTG 57.427 40.909 0.00 0.00 34.24 3.82
1924 2091 3.615155 TGGTTTCTGTGTGAATGTGTGA 58.385 40.909 0.00 0.00 34.24 3.58
1925 2092 4.013050 TGGTTTCTGTGTGAATGTGTGAA 58.987 39.130 0.00 0.00 34.24 3.18
1978 2145 0.532573 ATCGACGTGCACAAGAGGAT 59.467 50.000 18.64 8.65 0.00 3.24
1987 2154 3.084039 TGCACAAGAGGATGATTCAACC 58.916 45.455 4.85 4.85 0.00 3.77
2076 2246 2.203394 ACCACTGGTGCTTGCTGG 60.203 61.111 0.00 0.00 32.98 4.85
2080 2250 1.317613 CACTGGTGCTTGCTGGTTAA 58.682 50.000 0.00 0.00 0.00 2.01
2081 2251 1.267806 CACTGGTGCTTGCTGGTTAAG 59.732 52.381 0.00 0.00 0.00 1.85
2082 2252 1.133792 ACTGGTGCTTGCTGGTTAAGT 60.134 47.619 0.00 0.00 0.00 2.24
2083 2253 1.956477 CTGGTGCTTGCTGGTTAAGTT 59.044 47.619 0.00 0.00 0.00 2.66
2084 2254 2.362077 CTGGTGCTTGCTGGTTAAGTTT 59.638 45.455 0.00 0.00 0.00 2.66
2085 2255 2.763448 TGGTGCTTGCTGGTTAAGTTTT 59.237 40.909 0.00 0.00 0.00 2.43
2086 2256 3.954904 TGGTGCTTGCTGGTTAAGTTTTA 59.045 39.130 0.00 0.00 0.00 1.52
2087 2257 4.037446 TGGTGCTTGCTGGTTAAGTTTTAG 59.963 41.667 0.00 0.00 0.00 1.85
2088 2258 4.037565 GGTGCTTGCTGGTTAAGTTTTAGT 59.962 41.667 0.00 0.00 0.00 2.24
2089 2259 5.239963 GGTGCTTGCTGGTTAAGTTTTAGTA 59.760 40.000 0.00 0.00 0.00 1.82
2090 2260 6.238814 GGTGCTTGCTGGTTAAGTTTTAGTAA 60.239 38.462 0.00 0.00 0.00 2.24
2091 2261 6.635641 GTGCTTGCTGGTTAAGTTTTAGTAAC 59.364 38.462 0.00 0.00 0.00 2.50
2092 2262 6.319152 TGCTTGCTGGTTAAGTTTTAGTAACA 59.681 34.615 0.00 0.00 32.83 2.41
2093 2263 6.635641 GCTTGCTGGTTAAGTTTTAGTAACAC 59.364 38.462 0.00 0.00 32.83 3.32
2094 2264 7.468220 GCTTGCTGGTTAAGTTTTAGTAACACT 60.468 37.037 0.00 0.00 32.83 3.55
2095 2265 7.868906 TGCTGGTTAAGTTTTAGTAACACTT 57.131 32.000 16.49 16.49 32.83 3.16
2096 2266 8.961294 TGCTGGTTAAGTTTTAGTAACACTTA 57.039 30.769 14.78 14.78 32.83 2.24
2097 2267 9.048446 TGCTGGTTAAGTTTTAGTAACACTTAG 57.952 33.333 17.02 11.23 35.08 2.18
2098 2268 9.049523 GCTGGTTAAGTTTTAGTAACACTTAGT 57.950 33.333 17.02 0.99 35.08 2.24
2151 2321 1.715585 CAACCGCACACATCCGATC 59.284 57.895 0.00 0.00 0.00 3.69
2205 2377 1.134401 CAGGGCGTATGATCAACCTGT 60.134 52.381 18.14 0.00 40.36 4.00
2208 2380 2.102588 GGGCGTATGATCAACCTGTACT 59.897 50.000 0.00 0.00 0.00 2.73
2255 2427 2.363306 TTGGACCAGCAAGAACACAT 57.637 45.000 0.00 0.00 0.00 3.21
2263 2435 5.994250 ACCAGCAAGAACACATATATCACT 58.006 37.500 0.00 0.00 0.00 3.41
2333 2536 6.566197 AAAATCTGTTGGAGCTAACTCAAG 57.434 37.500 1.29 0.00 45.42 3.02
2335 2538 3.995199 TCTGTTGGAGCTAACTCAAGTG 58.005 45.455 1.29 0.00 45.42 3.16
2338 2541 2.169832 TGGAGCTAACTCAAGTGCAC 57.830 50.000 9.40 9.40 45.42 4.57
2388 2592 1.917273 CCATCTGGCAAAATTGAGCG 58.083 50.000 0.00 0.00 0.00 5.03
2389 2593 1.274596 CATCTGGCAAAATTGAGCGC 58.725 50.000 0.00 0.00 0.00 5.92
2390 2594 0.174162 ATCTGGCAAAATTGAGCGCC 59.826 50.000 2.29 0.00 45.11 6.53
2392 2596 3.181290 GGCAAAATTGAGCGCCGC 61.181 61.111 2.29 0.00 34.26 6.53
2393 2597 2.126346 GCAAAATTGAGCGCCGCT 60.126 55.556 13.40 13.40 43.88 5.52
2394 2598 1.136565 GCAAAATTGAGCGCCGCTA 59.863 52.632 13.54 0.00 39.88 4.26
2395 2599 0.248621 GCAAAATTGAGCGCCGCTAT 60.249 50.000 13.54 0.00 39.88 2.97
2396 2600 1.002900 GCAAAATTGAGCGCCGCTATA 60.003 47.619 13.54 2.71 39.88 1.31
2397 2601 2.540769 GCAAAATTGAGCGCCGCTATAA 60.541 45.455 13.54 11.43 39.88 0.98
2398 2602 3.690422 CAAAATTGAGCGCCGCTATAAA 58.310 40.909 13.54 7.77 39.88 1.40
2399 2603 3.609103 AAATTGAGCGCCGCTATAAAG 57.391 42.857 13.54 0.00 39.88 1.85
2400 2604 2.526304 ATTGAGCGCCGCTATAAAGA 57.474 45.000 13.54 0.00 39.88 2.52
2401 2605 2.526304 TTGAGCGCCGCTATAAAGAT 57.474 45.000 13.54 0.00 39.88 2.40
2402 2606 1.783284 TGAGCGCCGCTATAAAGATG 58.217 50.000 13.54 0.00 39.88 2.90
2403 2607 1.339929 TGAGCGCCGCTATAAAGATGA 59.660 47.619 13.54 0.00 39.88 2.92
2404 2608 1.721926 GAGCGCCGCTATAAAGATGAC 59.278 52.381 13.54 0.00 39.88 3.06
2405 2609 1.068588 AGCGCCGCTATAAAGATGACA 59.931 47.619 11.29 0.00 36.99 3.58
2406 2610 1.192534 GCGCCGCTATAAAGATGACAC 59.807 52.381 0.00 0.00 0.00 3.67
2407 2611 2.743938 CGCCGCTATAAAGATGACACT 58.256 47.619 0.00 0.00 0.00 3.55
2408 2612 2.472861 CGCCGCTATAAAGATGACACTG 59.527 50.000 0.00 0.00 0.00 3.66
2409 2613 3.458189 GCCGCTATAAAGATGACACTGT 58.542 45.455 0.00 0.00 0.00 3.55
2410 2614 3.491267 GCCGCTATAAAGATGACACTGTC 59.509 47.826 1.86 1.86 0.00 3.51
2411 2615 4.051922 CCGCTATAAAGATGACACTGTCC 58.948 47.826 6.72 0.00 0.00 4.02
2412 2616 3.731216 CGCTATAAAGATGACACTGTCCG 59.269 47.826 6.72 0.00 0.00 4.79
2413 2617 4.051922 GCTATAAAGATGACACTGTCCGG 58.948 47.826 6.72 0.00 0.00 5.14
2414 2618 2.380084 TAAAGATGACACTGTCCGGC 57.620 50.000 6.72 0.00 0.00 6.13
2415 2619 0.321653 AAAGATGACACTGTCCGGCC 60.322 55.000 6.72 0.00 0.00 6.13
2416 2620 2.507110 AAGATGACACTGTCCGGCCG 62.507 60.000 21.04 21.04 0.00 6.13
2417 2621 2.994995 ATGACACTGTCCGGCCGA 60.995 61.111 30.73 10.38 0.00 5.54
2418 2622 2.298158 GATGACACTGTCCGGCCGAT 62.298 60.000 30.73 8.58 0.00 4.18
2419 2623 1.899437 ATGACACTGTCCGGCCGATT 61.899 55.000 30.73 1.83 0.00 3.34
2420 2624 1.375523 GACACTGTCCGGCCGATTT 60.376 57.895 30.73 2.26 0.00 2.17
2421 2625 0.953960 GACACTGTCCGGCCGATTTT 60.954 55.000 30.73 3.13 0.00 1.82
2422 2626 1.234615 ACACTGTCCGGCCGATTTTG 61.235 55.000 30.73 18.56 0.00 2.44
2423 2627 0.953471 CACTGTCCGGCCGATTTTGA 60.953 55.000 30.73 12.55 0.00 2.69
2424 2628 0.673644 ACTGTCCGGCCGATTTTGAG 60.674 55.000 30.73 15.18 0.00 3.02
2425 2629 0.391130 CTGTCCGGCCGATTTTGAGA 60.391 55.000 30.73 12.59 0.00 3.27
2426 2630 0.672401 TGTCCGGCCGATTTTGAGAC 60.672 55.000 30.73 22.96 0.00 3.36
2427 2631 1.447140 TCCGGCCGATTTTGAGACG 60.447 57.895 30.73 5.39 0.00 4.18
2428 2632 1.447140 CCGGCCGATTTTGAGACGA 60.447 57.895 30.73 0.00 0.00 4.20
2429 2633 0.810031 CCGGCCGATTTTGAGACGAT 60.810 55.000 30.73 0.00 0.00 3.73
2430 2634 0.301687 CGGCCGATTTTGAGACGATG 59.698 55.000 24.07 0.00 0.00 3.84
2431 2635 0.028110 GGCCGATTTTGAGACGATGC 59.972 55.000 0.00 0.00 0.00 3.91
2432 2636 0.028110 GCCGATTTTGAGACGATGCC 59.972 55.000 0.00 0.00 0.00 4.40
2433 2637 1.368641 CCGATTTTGAGACGATGCCA 58.631 50.000 0.00 0.00 0.00 4.92
2434 2638 1.942657 CCGATTTTGAGACGATGCCAT 59.057 47.619 0.00 0.00 0.00 4.40
2435 2639 2.355756 CCGATTTTGAGACGATGCCATT 59.644 45.455 0.00 0.00 0.00 3.16
2436 2640 3.546815 CCGATTTTGAGACGATGCCATTC 60.547 47.826 0.00 0.00 0.00 2.67
2437 2641 3.063861 CGATTTTGAGACGATGCCATTCA 59.936 43.478 0.00 0.00 0.00 2.57
2438 2642 4.260907 CGATTTTGAGACGATGCCATTCAT 60.261 41.667 0.00 0.00 38.32 2.57
2439 2643 4.621068 TTTTGAGACGATGCCATTCATC 57.379 40.909 0.00 0.00 46.32 2.92
2440 2644 2.245159 TGAGACGATGCCATTCATCC 57.755 50.000 0.00 0.00 46.93 3.51
2441 2645 1.485895 TGAGACGATGCCATTCATCCA 59.514 47.619 0.00 0.00 46.93 3.41
2442 2646 2.093021 TGAGACGATGCCATTCATCCAA 60.093 45.455 0.00 0.00 46.93 3.53
2443 2647 2.289002 GAGACGATGCCATTCATCCAAC 59.711 50.000 0.00 0.00 46.93 3.77
2444 2648 1.334869 GACGATGCCATTCATCCAACC 59.665 52.381 0.00 0.00 46.93 3.77
2445 2649 1.340893 ACGATGCCATTCATCCAACCA 60.341 47.619 0.00 0.00 46.93 3.67
2446 2650 1.958579 CGATGCCATTCATCCAACCAT 59.041 47.619 0.00 0.00 46.93 3.55
2447 2651 2.287970 CGATGCCATTCATCCAACCATG 60.288 50.000 0.00 0.00 46.93 3.66
2448 2652 0.825410 TGCCATTCATCCAACCATGC 59.175 50.000 0.00 0.00 0.00 4.06
2449 2653 0.825410 GCCATTCATCCAACCATGCA 59.175 50.000 0.00 0.00 0.00 3.96
2450 2654 1.414919 GCCATTCATCCAACCATGCAT 59.585 47.619 0.00 0.00 0.00 3.96
2451 2655 2.805295 GCCATTCATCCAACCATGCATG 60.805 50.000 20.19 20.19 29.90 4.06
2460 2664 3.837578 CCATGCATGGTGAGGAGC 58.162 61.111 33.68 0.00 43.05 4.70
2461 2665 1.077285 CCATGCATGGTGAGGAGCA 60.077 57.895 33.68 0.00 43.05 4.26
2462 2666 0.681887 CCATGCATGGTGAGGAGCAA 60.682 55.000 33.68 0.00 43.05 3.91
2463 2667 0.738975 CATGCATGGTGAGGAGCAAG 59.261 55.000 19.40 0.00 40.76 4.01
2464 2668 0.330604 ATGCATGGTGAGGAGCAAGT 59.669 50.000 0.00 0.00 40.76 3.16
2465 2669 0.607217 TGCATGGTGAGGAGCAAGTG 60.607 55.000 0.00 0.00 33.48 3.16
2466 2670 0.607489 GCATGGTGAGGAGCAAGTGT 60.607 55.000 0.00 0.00 32.09 3.55
2467 2671 1.446907 CATGGTGAGGAGCAAGTGTC 58.553 55.000 0.00 0.00 32.09 3.67
2468 2672 1.059098 ATGGTGAGGAGCAAGTGTCA 58.941 50.000 0.00 0.00 32.09 3.58
2469 2673 0.106708 TGGTGAGGAGCAAGTGTCAC 59.893 55.000 0.00 0.00 38.89 3.67
2470 2674 0.106708 GGTGAGGAGCAAGTGTCACA 59.893 55.000 5.62 0.00 40.96 3.58
2471 2675 1.221414 GTGAGGAGCAAGTGTCACAC 58.779 55.000 0.00 0.00 39.33 3.82
2472 2676 0.249447 TGAGGAGCAAGTGTCACACG 60.249 55.000 1.22 0.00 39.64 4.49
2473 2677 0.946221 GAGGAGCAAGTGTCACACGG 60.946 60.000 1.22 0.00 39.64 4.94
2474 2678 2.607892 GGAGCAAGTGTCACACGGC 61.608 63.158 17.01 17.01 39.64 5.68
2475 2679 2.591715 AGCAAGTGTCACACGGCC 60.592 61.111 19.96 0.00 39.20 6.13
2476 2680 4.012895 GCAAGTGTCACACGGCCG 62.013 66.667 26.86 26.86 39.64 6.13
2477 2681 4.012895 CAAGTGTCACACGGCCGC 62.013 66.667 28.58 9.24 39.64 6.53
2478 2682 4.235762 AAGTGTCACACGGCCGCT 62.236 61.111 28.58 9.56 39.64 5.52
2479 2683 4.969196 AGTGTCACACGGCCGCTG 62.969 66.667 28.58 24.04 39.64 5.18
2482 2686 4.760047 GTCACACGGCCGCTGGAT 62.760 66.667 28.58 0.81 0.00 3.41
2483 2687 4.451150 TCACACGGCCGCTGGATC 62.451 66.667 28.58 0.00 0.00 3.36
2484 2688 4.758251 CACACGGCCGCTGGATCA 62.758 66.667 28.58 0.00 0.00 2.92
2485 2689 4.457496 ACACGGCCGCTGGATCAG 62.457 66.667 28.58 7.47 34.12 2.90
2489 2693 4.101448 GGCCGCTGGATCAGGTGT 62.101 66.667 0.00 0.00 31.21 4.16
2490 2694 2.512515 GCCGCTGGATCAGGTGTC 60.513 66.667 0.00 0.00 31.21 3.67
2491 2695 2.202797 CCGCTGGATCAGGTGTCG 60.203 66.667 0.00 0.00 31.21 4.35
2492 2696 2.573869 CGCTGGATCAGGTGTCGT 59.426 61.111 0.00 0.00 31.21 4.34
2493 2697 1.517257 CGCTGGATCAGGTGTCGTC 60.517 63.158 0.00 0.00 31.21 4.20
2494 2698 1.893786 GCTGGATCAGGTGTCGTCT 59.106 57.895 0.00 0.00 31.21 4.18
2495 2699 0.459237 GCTGGATCAGGTGTCGTCTG 60.459 60.000 0.00 0.00 31.21 3.51
2496 2700 1.177401 CTGGATCAGGTGTCGTCTGA 58.823 55.000 0.00 0.00 44.19 3.27
2497 2701 1.546029 CTGGATCAGGTGTCGTCTGAA 59.454 52.381 0.00 0.00 43.43 3.02
2498 2702 1.967779 TGGATCAGGTGTCGTCTGAAA 59.032 47.619 0.00 0.00 43.43 2.69
2499 2703 2.367241 TGGATCAGGTGTCGTCTGAAAA 59.633 45.455 0.00 0.00 43.43 2.29
2500 2704 3.007940 TGGATCAGGTGTCGTCTGAAAAT 59.992 43.478 0.00 0.00 43.43 1.82
2501 2705 3.619038 GGATCAGGTGTCGTCTGAAAATC 59.381 47.826 0.00 0.00 43.43 2.17
2502 2706 2.672714 TCAGGTGTCGTCTGAAAATCG 58.327 47.619 0.00 0.00 38.20 3.34
2503 2707 2.035449 TCAGGTGTCGTCTGAAAATCGT 59.965 45.455 0.00 0.00 38.20 3.73
2504 2708 2.800544 CAGGTGTCGTCTGAAAATCGTT 59.199 45.455 0.00 0.00 34.36 3.85
2505 2709 3.057734 AGGTGTCGTCTGAAAATCGTTC 58.942 45.455 0.00 0.00 0.00 3.95
2506 2710 2.798283 GGTGTCGTCTGAAAATCGTTCA 59.202 45.455 0.00 0.00 0.00 3.18
2507 2711 3.362693 GGTGTCGTCTGAAAATCGTTCAC 60.363 47.826 0.00 0.00 33.88 3.18
2508 2712 2.798283 TGTCGTCTGAAAATCGTTCACC 59.202 45.455 0.00 0.00 0.00 4.02
2509 2713 2.055838 TCGTCTGAAAATCGTTCACCG 58.944 47.619 0.00 0.00 38.13 4.94
2525 2729 4.406173 CGAGTGTCGGCGCAGAGT 62.406 66.667 11.47 0.00 36.00 3.24
2526 2730 2.875485 GAGTGTCGGCGCAGAGTA 59.125 61.111 11.47 0.00 0.00 2.59
2527 2731 1.226435 GAGTGTCGGCGCAGAGTAG 60.226 63.158 11.47 0.00 0.00 2.57
2528 2732 1.924320 GAGTGTCGGCGCAGAGTAGT 61.924 60.000 11.47 6.12 0.00 2.73
2529 2733 1.080705 GTGTCGGCGCAGAGTAGTT 60.081 57.895 11.47 0.00 0.00 2.24
2530 2734 1.071567 GTGTCGGCGCAGAGTAGTTC 61.072 60.000 11.47 0.00 0.00 3.01
2531 2735 1.516603 GTCGGCGCAGAGTAGTTCC 60.517 63.158 11.47 0.00 0.00 3.62
2532 2736 1.974875 TCGGCGCAGAGTAGTTCCA 60.975 57.895 10.83 0.00 0.00 3.53
2533 2737 1.805945 CGGCGCAGAGTAGTTCCAC 60.806 63.158 10.83 0.00 0.00 4.02
2534 2738 1.805945 GGCGCAGAGTAGTTCCACG 60.806 63.158 10.83 0.00 0.00 4.94
2535 2739 2.445438 GCGCAGAGTAGTTCCACGC 61.445 63.158 0.30 0.00 41.44 5.34
2536 2740 1.080772 CGCAGAGTAGTTCCACGCA 60.081 57.895 0.00 0.00 0.00 5.24
2537 2741 0.666274 CGCAGAGTAGTTCCACGCAA 60.666 55.000 0.00 0.00 0.00 4.85
2538 2742 1.508632 GCAGAGTAGTTCCACGCAAA 58.491 50.000 0.00 0.00 0.00 3.68
2539 2743 1.871039 GCAGAGTAGTTCCACGCAAAA 59.129 47.619 0.00 0.00 0.00 2.44
2540 2744 2.484264 GCAGAGTAGTTCCACGCAAAAT 59.516 45.455 0.00 0.00 0.00 1.82
2541 2745 3.058224 GCAGAGTAGTTCCACGCAAAATT 60.058 43.478 0.00 0.00 0.00 1.82
2569 2773 3.687698 GGCAATCGCTAACCTTGTTCTTA 59.312 43.478 0.00 0.00 38.60 2.10
2570 2774 4.436986 GGCAATCGCTAACCTTGTTCTTAC 60.437 45.833 0.00 0.00 38.60 2.34
2574 2778 5.972107 TCGCTAACCTTGTTCTTACTACT 57.028 39.130 0.00 0.00 0.00 2.57
2575 2779 5.947443 TCGCTAACCTTGTTCTTACTACTC 58.053 41.667 0.00 0.00 0.00 2.59
2576 2780 4.792189 CGCTAACCTTGTTCTTACTACTCG 59.208 45.833 0.00 0.00 0.00 4.18
2577 2781 5.618640 CGCTAACCTTGTTCTTACTACTCGT 60.619 44.000 0.00 0.00 0.00 4.18
2578 2782 6.402550 CGCTAACCTTGTTCTTACTACTCGTA 60.403 42.308 0.00 0.00 0.00 3.43
2579 2783 6.744993 GCTAACCTTGTTCTTACTACTCGTAC 59.255 42.308 0.00 0.00 0.00 3.67
2580 2784 5.288543 ACCTTGTTCTTACTACTCGTACG 57.711 43.478 9.53 9.53 0.00 3.67
2581 2785 4.997395 ACCTTGTTCTTACTACTCGTACGA 59.003 41.667 18.41 18.41 0.00 3.43
2596 2800 5.519566 ACTCGTACGAGACTAACATGAGTAG 59.480 44.000 42.94 18.20 44.53 2.57
2598 2802 6.564328 TCGTACGAGACTAACATGAGTAGTA 58.436 40.000 15.28 0.00 0.00 1.82
2601 2805 7.042858 CGTACGAGACTAACATGAGTAGTACAT 60.043 40.741 10.44 8.87 36.13 2.29
2649 2853 7.057894 ACGTAATTTTCTTTATGATAGGGGCA 58.942 34.615 0.00 0.00 0.00 5.36
2656 2860 6.950860 TCTTTATGATAGGGGCATACATCA 57.049 37.500 0.00 0.00 32.32 3.07
2660 2864 7.515004 TTATGATAGGGGCATACATCAATCT 57.485 36.000 0.00 0.00 31.59 2.40
2662 2866 4.598807 TGATAGGGGCATACATCAATCTGT 59.401 41.667 0.00 0.00 0.00 3.41
2672 2876 2.562738 ACATCAATCTGTCGAGGTCACA 59.437 45.455 0.00 0.00 0.00 3.58
2673 2877 2.724977 TCAATCTGTCGAGGTCACAC 57.275 50.000 0.00 0.00 0.00 3.82
2674 2878 1.068541 TCAATCTGTCGAGGTCACACG 60.069 52.381 0.00 0.00 0.00 4.49
2675 2879 0.388649 AATCTGTCGAGGTCACACGC 60.389 55.000 0.00 0.00 0.00 5.34
2676 2880 1.524008 ATCTGTCGAGGTCACACGCA 61.524 55.000 0.00 0.00 0.00 5.24
2677 2881 1.080501 CTGTCGAGGTCACACGCAT 60.081 57.895 0.00 0.00 0.00 4.73
2678 2882 0.667487 CTGTCGAGGTCACACGCATT 60.667 55.000 0.00 0.00 0.00 3.56
2679 2883 0.599060 TGTCGAGGTCACACGCATTA 59.401 50.000 0.00 0.00 0.00 1.90
2680 2884 0.989890 GTCGAGGTCACACGCATTAC 59.010 55.000 0.00 0.00 0.00 1.89
2681 2885 0.885879 TCGAGGTCACACGCATTACT 59.114 50.000 0.00 0.00 0.00 2.24
2682 2886 2.086094 TCGAGGTCACACGCATTACTA 58.914 47.619 0.00 0.00 0.00 1.82
2683 2887 2.096980 TCGAGGTCACACGCATTACTAG 59.903 50.000 0.00 0.00 0.00 2.57
2684 2888 2.794981 CGAGGTCACACGCATTACTAGG 60.795 54.545 0.00 0.00 0.00 3.02
2685 2889 2.426024 GAGGTCACACGCATTACTAGGA 59.574 50.000 0.00 0.00 0.00 2.94
2686 2890 2.829720 AGGTCACACGCATTACTAGGAA 59.170 45.455 0.00 0.00 0.00 3.36
2687 2891 3.259876 AGGTCACACGCATTACTAGGAAA 59.740 43.478 0.00 0.00 0.00 3.13
2688 2892 3.998341 GGTCACACGCATTACTAGGAAAA 59.002 43.478 0.00 0.00 0.00 2.29
2689 2893 4.453136 GGTCACACGCATTACTAGGAAAAA 59.547 41.667 0.00 0.00 0.00 1.94
2690 2894 5.390567 GGTCACACGCATTACTAGGAAAAAG 60.391 44.000 0.00 0.00 0.00 2.27
2691 2895 4.153475 TCACACGCATTACTAGGAAAAAGC 59.847 41.667 0.00 0.00 0.00 3.51
2692 2896 3.439129 ACACGCATTACTAGGAAAAAGCC 59.561 43.478 0.00 0.00 0.00 4.35
2693 2897 3.689649 CACGCATTACTAGGAAAAAGCCT 59.310 43.478 0.00 0.00 42.15 4.58
2694 2898 4.873827 CACGCATTACTAGGAAAAAGCCTA 59.126 41.667 0.00 0.00 39.50 3.93
2695 2899 5.353123 CACGCATTACTAGGAAAAAGCCTAA 59.647 40.000 0.00 0.00 39.91 2.69
2696 2900 5.353400 ACGCATTACTAGGAAAAAGCCTAAC 59.647 40.000 0.00 0.00 39.91 2.34
2697 2901 5.353123 CGCATTACTAGGAAAAAGCCTAACA 59.647 40.000 0.00 0.00 39.91 2.41
2698 2902 6.456988 CGCATTACTAGGAAAAAGCCTAACAG 60.457 42.308 0.00 0.00 39.91 3.16
2699 2903 6.678164 GCATTACTAGGAAAAAGCCTAACAGC 60.678 42.308 0.00 0.00 39.91 4.40
2700 2904 4.367039 ACTAGGAAAAAGCCTAACAGCA 57.633 40.909 0.00 0.00 39.91 4.41
2701 2905 4.327680 ACTAGGAAAAAGCCTAACAGCAG 58.672 43.478 0.00 0.00 39.91 4.24
2702 2906 3.229697 AGGAAAAAGCCTAACAGCAGT 57.770 42.857 0.00 0.00 36.22 4.40
2703 2907 2.887152 AGGAAAAAGCCTAACAGCAGTG 59.113 45.455 0.00 0.00 36.22 3.66
2704 2908 2.608016 GGAAAAAGCCTAACAGCAGTGC 60.608 50.000 7.13 7.13 34.23 4.40
2705 2909 0.593128 AAAAGCCTAACAGCAGTGCG 59.407 50.000 10.00 7.44 34.23 5.34
2706 2910 1.237285 AAAGCCTAACAGCAGTGCGG 61.237 55.000 14.06 14.06 34.23 5.69
2707 2911 3.127533 GCCTAACAGCAGTGCGGG 61.128 66.667 19.59 13.62 0.00 6.13
2708 2912 2.347490 CCTAACAGCAGTGCGGGT 59.653 61.111 19.59 15.78 0.00 5.28
2709 2913 1.302511 CCTAACAGCAGTGCGGGTT 60.303 57.895 24.68 24.68 35.76 4.11
2710 2914 0.889186 CCTAACAGCAGTGCGGGTTT 60.889 55.000 25.87 13.17 34.21 3.27
2711 2915 0.951558 CTAACAGCAGTGCGGGTTTT 59.048 50.000 25.87 12.56 34.21 2.43
2712 2916 2.147958 CTAACAGCAGTGCGGGTTTTA 58.852 47.619 25.87 12.96 34.21 1.52
2713 2917 0.951558 AACAGCAGTGCGGGTTTTAG 59.048 50.000 19.59 1.92 29.73 1.85
2714 2918 0.889186 ACAGCAGTGCGGGTTTTAGG 60.889 55.000 19.59 0.57 0.00 2.69
2715 2919 0.889186 CAGCAGTGCGGGTTTTAGGT 60.889 55.000 10.00 0.00 0.00 3.08
2716 2920 0.688487 AGCAGTGCGGGTTTTAGGTA 59.312 50.000 10.00 0.00 0.00 3.08
2717 2921 1.280998 AGCAGTGCGGGTTTTAGGTAT 59.719 47.619 10.00 0.00 0.00 2.73
2718 2922 2.502538 AGCAGTGCGGGTTTTAGGTATA 59.497 45.455 10.00 0.00 0.00 1.47
2719 2923 2.870411 GCAGTGCGGGTTTTAGGTATAG 59.130 50.000 0.00 0.00 0.00 1.31
2720 2924 2.870411 CAGTGCGGGTTTTAGGTATAGC 59.130 50.000 0.00 0.00 0.00 2.97
2721 2925 2.502538 AGTGCGGGTTTTAGGTATAGCA 59.497 45.455 4.48 0.00 0.00 3.49
2722 2926 2.870411 GTGCGGGTTTTAGGTATAGCAG 59.130 50.000 4.48 0.00 33.84 4.24
2723 2927 2.502538 TGCGGGTTTTAGGTATAGCAGT 59.497 45.455 4.48 0.00 0.00 4.40
2724 2928 3.705579 TGCGGGTTTTAGGTATAGCAGTA 59.294 43.478 4.48 0.00 0.00 2.74
2725 2929 4.202182 TGCGGGTTTTAGGTATAGCAGTAG 60.202 45.833 4.48 0.00 0.00 2.57
2726 2930 4.304939 CGGGTTTTAGGTATAGCAGTAGC 58.695 47.826 4.48 0.00 42.56 3.58
2736 2940 4.874977 GCAGTAGCGCGGAGTCCC 62.875 72.222 8.83 0.00 0.00 4.46
2746 2950 3.138798 GGAGTCCCGCGCTACTGA 61.139 66.667 15.18 0.00 0.00 3.41
2747 2951 2.491022 GGAGTCCCGCGCTACTGAT 61.491 63.158 15.18 0.00 0.00 2.90
2748 2952 1.170919 GGAGTCCCGCGCTACTGATA 61.171 60.000 15.18 0.00 0.00 2.15
2749 2953 0.040246 GAGTCCCGCGCTACTGATAC 60.040 60.000 15.18 0.00 0.00 2.24
2750 2954 1.370172 GTCCCGCGCTACTGATACG 60.370 63.158 5.56 0.00 0.00 3.06
2751 2955 2.050351 CCCGCGCTACTGATACGG 60.050 66.667 5.56 0.00 43.44 4.02
2752 2956 2.729862 CCGCGCTACTGATACGGC 60.730 66.667 5.56 0.00 37.05 5.68
2755 2959 2.331805 CGCTACTGATACGGCGCT 59.668 61.111 6.90 0.00 41.08 5.92
2756 2960 1.572941 CGCTACTGATACGGCGCTA 59.427 57.895 6.90 0.00 41.08 4.26
2757 2961 0.725118 CGCTACTGATACGGCGCTAC 60.725 60.000 6.90 0.00 41.08 3.58
2758 2962 0.309922 GCTACTGATACGGCGCTACA 59.690 55.000 6.90 3.36 0.00 2.74
2759 2963 1.268896 GCTACTGATACGGCGCTACAA 60.269 52.381 6.90 0.00 0.00 2.41
2760 2964 2.382519 CTACTGATACGGCGCTACAAC 58.617 52.381 6.90 0.00 0.00 3.32
2761 2965 0.815734 ACTGATACGGCGCTACAACT 59.184 50.000 6.90 0.00 0.00 3.16
2762 2966 2.019249 ACTGATACGGCGCTACAACTA 58.981 47.619 6.90 0.00 0.00 2.24
2763 2967 2.424601 ACTGATACGGCGCTACAACTAA 59.575 45.455 6.90 0.00 0.00 2.24
2764 2968 2.787680 CTGATACGGCGCTACAACTAAC 59.212 50.000 6.90 0.00 0.00 2.34
2765 2969 2.122564 GATACGGCGCTACAACTAACC 58.877 52.381 6.90 0.00 0.00 2.85
2766 2970 1.176527 TACGGCGCTACAACTAACCT 58.823 50.000 6.90 0.00 0.00 3.50
2767 2971 0.389426 ACGGCGCTACAACTAACCTG 60.389 55.000 6.90 0.00 0.00 4.00
2768 2972 0.389426 CGGCGCTACAACTAACCTGT 60.389 55.000 7.64 0.00 0.00 4.00
2769 2973 1.135315 CGGCGCTACAACTAACCTGTA 60.135 52.381 7.64 0.00 0.00 2.74
2770 2974 2.537401 GGCGCTACAACTAACCTGTAG 58.463 52.381 7.64 5.77 46.02 2.74
2775 2979 4.188247 CTACAACTAACCTGTAGCAGCA 57.812 45.455 0.00 0.00 39.75 4.41
2776 2980 3.045601 ACAACTAACCTGTAGCAGCAG 57.954 47.619 0.00 1.13 36.31 4.24
2777 2981 1.734465 CAACTAACCTGTAGCAGCAGC 59.266 52.381 0.00 0.00 42.56 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
81 158 1.253593 TGGCACAGTGTTTTGGCACA 61.254 50.000 1.61 0.00 42.85 4.57
82 159 0.108424 TTGGCACAGTGTTTTGGCAC 60.108 50.000 7.83 0.00 46.91 5.01
83 160 0.610174 TTTGGCACAGTGTTTTGGCA 59.390 45.000 1.61 4.58 45.74 4.92
84 161 1.731720 TTTTGGCACAGTGTTTTGGC 58.268 45.000 1.61 0.00 42.39 4.52
85 162 3.937706 TGAATTTTGGCACAGTGTTTTGG 59.062 39.130 1.61 0.00 42.39 3.28
86 163 4.630940 ACTGAATTTTGGCACAGTGTTTTG 59.369 37.500 6.87 0.00 42.39 2.44
87 164 4.831107 ACTGAATTTTGGCACAGTGTTTT 58.169 34.783 6.87 0.00 42.39 2.43
88 165 4.470334 ACTGAATTTTGGCACAGTGTTT 57.530 36.364 6.87 0.00 42.39 2.83
89 166 4.081752 TCAACTGAATTTTGGCACAGTGTT 60.082 37.500 8.27 0.00 41.73 3.32
90 167 3.446873 TCAACTGAATTTTGGCACAGTGT 59.553 39.130 8.27 0.00 41.73 3.55
91 168 4.044336 TCAACTGAATTTTGGCACAGTG 57.956 40.909 8.27 0.00 41.73 3.66
92 169 4.734398 TTCAACTGAATTTTGGCACAGT 57.266 36.364 2.18 2.18 43.92 3.55
93 170 5.581874 AGTTTTCAACTGAATTTTGGCACAG 59.418 36.000 0.94 0.94 39.46 3.66
369 482 1.209127 GCGCGTGGTAAACTTGCAT 59.791 52.632 8.43 0.00 0.00 3.96
521 637 4.035208 GTGCAGTTTAGTGCTACAACTTGT 59.965 41.667 10.61 0.00 44.32 3.16
588 709 1.021968 GTGTGTCGCCCAGAGTTTTT 58.978 50.000 0.00 0.00 0.00 1.94
589 710 0.107410 TGTGTGTCGCCCAGAGTTTT 60.107 50.000 0.00 0.00 0.00 2.43
590 711 0.108585 ATGTGTGTCGCCCAGAGTTT 59.891 50.000 0.00 0.00 0.00 2.66
591 712 0.108585 AATGTGTGTCGCCCAGAGTT 59.891 50.000 0.00 0.00 0.00 3.01
592 713 0.603707 CAATGTGTGTCGCCCAGAGT 60.604 55.000 0.00 0.00 0.00 3.24
593 714 1.915614 GCAATGTGTGTCGCCCAGAG 61.916 60.000 0.00 0.00 0.00 3.35
594 715 1.965930 GCAATGTGTGTCGCCCAGA 60.966 57.895 0.00 0.00 0.00 3.86
595 716 1.915614 GAGCAATGTGTGTCGCCCAG 61.916 60.000 0.00 0.00 0.00 4.45
596 717 1.965930 GAGCAATGTGTGTCGCCCA 60.966 57.895 0.00 0.00 0.00 5.36
597 718 2.690778 GGAGCAATGTGTGTCGCCC 61.691 63.158 0.00 0.00 0.00 6.13
598 719 2.690778 GGGAGCAATGTGTGTCGCC 61.691 63.158 0.00 0.00 0.00 5.54
599 720 1.514678 TTGGGAGCAATGTGTGTCGC 61.515 55.000 0.00 0.00 0.00 5.19
600 721 0.950836 TTTGGGAGCAATGTGTGTCG 59.049 50.000 0.00 0.00 0.00 4.35
601 722 1.680735 TGTTTGGGAGCAATGTGTGTC 59.319 47.619 0.00 0.00 0.00 3.67
602 723 1.774110 TGTTTGGGAGCAATGTGTGT 58.226 45.000 0.00 0.00 0.00 3.72
606 727 3.259123 GGAAGATTGTTTGGGAGCAATGT 59.741 43.478 0.00 0.00 36.91 2.71
610 731 2.673775 TGGAAGATTGTTTGGGAGCA 57.326 45.000 0.00 0.00 0.00 4.26
622 743 4.843516 GGGTCCTCATTCTCTATGGAAGAT 59.156 45.833 0.00 0.00 34.85 2.40
632 753 4.654262 TGGTACTAATGGGTCCTCATTCTC 59.346 45.833 8.38 1.23 38.24 2.87
635 756 4.108570 TGTGGTACTAATGGGTCCTCATT 58.891 43.478 9.64 9.64 40.15 2.57
636 757 3.731431 TGTGGTACTAATGGGTCCTCAT 58.269 45.455 0.00 0.00 0.00 2.90
643 764 4.124238 CGGTTGTATGTGGTACTAATGGG 58.876 47.826 0.00 0.00 34.27 4.00
668 789 4.250305 CCGGGATGGCGGTAAGGG 62.250 72.222 0.00 0.00 0.00 3.95
818 941 3.669251 AGACGAGGAGAAAGAAAGTGG 57.331 47.619 0.00 0.00 0.00 4.00
894 1018 2.218953 TCTTGGGATACGATGCGTTC 57.781 50.000 0.00 0.00 41.54 3.95
895 1019 2.676342 GTTTCTTGGGATACGATGCGTT 59.324 45.455 0.00 0.00 41.54 4.84
896 1020 2.277084 GTTTCTTGGGATACGATGCGT 58.723 47.619 0.00 0.00 44.35 5.24
912 1036 4.900635 TCTTGCTCTGTTTCTTGGTTTC 57.099 40.909 0.00 0.00 0.00 2.78
998 1130 5.374071 TCTTGTTCATGATCTCATCCATGG 58.626 41.667 4.97 4.97 40.26 3.66
1080 1212 0.873312 CTCATGCACGGACCTCGATG 60.873 60.000 0.00 0.00 42.43 3.84
1103 1235 4.565962 CAGAACAGAAGATTGATGAGACGG 59.434 45.833 0.00 0.00 0.00 4.79
1131 1268 1.404035 GGGGAAATATGGTGCGACAAC 59.596 52.381 0.00 0.00 0.00 3.32
1231 1376 2.091541 ACCAAAAGTATCACATGGCGG 58.908 47.619 0.00 0.00 34.45 6.13
1326 1471 3.181447 ACCACCAATAGATCATCAGCCAG 60.181 47.826 0.00 0.00 0.00 4.85
1367 1530 2.119484 ATTTTGCTCCGTCCCCGACA 62.119 55.000 0.00 0.00 35.63 4.35
1394 1557 3.507622 GCATCTTACCCTTGAGCTTGTTT 59.492 43.478 0.00 0.00 0.00 2.83
1574 1737 1.227321 GGTCACCGTGGTGTCGAAA 60.227 57.895 18.05 0.00 45.55 3.46
1590 1753 4.988598 CTTGTCCAGCGTGCCGGT 62.989 66.667 1.90 0.00 38.40 5.28
1746 1909 2.512515 GGTGATGGCGCCTCTGAC 60.513 66.667 29.70 18.49 41.58 3.51
1836 2003 2.826128 TCCTCTTACAGCAGGTAGTGTG 59.174 50.000 0.00 0.00 32.49 3.82
1839 2006 2.312140 TCCTCCTCTTACAGCAGGTAGT 59.688 50.000 0.00 0.00 32.49 2.73
1881 2048 6.377996 ACCATATGAGCTGCAAAACTGAATTA 59.622 34.615 3.65 0.00 0.00 1.40
1918 2085 2.382746 GCGCATCGAGCTTCACACA 61.383 57.895 0.30 0.00 42.61 3.72
1919 2086 2.288926 CTGCGCATCGAGCTTCACAC 62.289 60.000 12.24 0.00 42.61 3.82
1920 2087 2.048316 TGCGCATCGAGCTTCACA 60.048 55.556 5.66 0.00 42.61 3.58
1921 2088 0.802222 TACTGCGCATCGAGCTTCAC 60.802 55.000 12.24 0.00 42.61 3.18
1922 2089 0.526310 CTACTGCGCATCGAGCTTCA 60.526 55.000 12.24 0.00 42.61 3.02
1923 2090 1.211818 CCTACTGCGCATCGAGCTTC 61.212 60.000 12.24 0.00 42.61 3.86
1924 2091 1.227089 CCTACTGCGCATCGAGCTT 60.227 57.895 12.24 0.00 42.61 3.74
1925 2092 2.415010 CCTACTGCGCATCGAGCT 59.585 61.111 12.24 0.00 42.61 4.09
1994 2161 4.641645 CCCGGCTGGTGCAAGTGA 62.642 66.667 11.58 0.00 41.91 3.41
1995 2162 4.641645 TCCCGGCTGGTGCAAGTG 62.642 66.667 11.58 0.00 41.91 3.16
1996 2163 3.210012 ATTCCCGGCTGGTGCAAGT 62.210 57.895 11.58 0.00 41.91 3.16
1997 2164 2.361610 ATTCCCGGCTGGTGCAAG 60.362 61.111 11.58 0.00 41.91 4.01
2106 2276 9.307121 CGTATTTGGTGGATGCATTATTTTTAA 57.693 29.630 0.00 0.00 0.00 1.52
2107 2277 7.436673 GCGTATTTGGTGGATGCATTATTTTTA 59.563 33.333 0.00 0.00 0.00 1.52
2108 2278 6.257630 GCGTATTTGGTGGATGCATTATTTTT 59.742 34.615 0.00 0.00 0.00 1.94
2109 2279 5.752955 GCGTATTTGGTGGATGCATTATTTT 59.247 36.000 0.00 0.00 0.00 1.82
2110 2280 5.163468 TGCGTATTTGGTGGATGCATTATTT 60.163 36.000 0.00 0.00 30.30 1.40
2111 2281 4.340666 TGCGTATTTGGTGGATGCATTATT 59.659 37.500 0.00 0.00 30.30 1.40
2120 2290 1.579084 GCGGTTGCGTATTTGGTGGA 61.579 55.000 0.00 0.00 0.00 4.02
2122 2292 4.450955 GCGGTTGCGTATTTGGTG 57.549 55.556 0.00 0.00 0.00 4.17
2151 2321 2.585869 CGTCGGCGATCCATTTCCG 61.586 63.158 14.79 5.24 42.96 4.30
2205 2377 1.144969 CTCGCAAAAGACGGCAAGTA 58.855 50.000 0.00 0.00 0.00 2.24
2208 2380 0.796312 GATCTCGCAAAAGACGGCAA 59.204 50.000 0.00 0.00 0.00 4.52
2272 2444 7.827819 TTGAGTAATACAGAGTTTTCATCCG 57.172 36.000 0.00 0.00 0.00 4.18
2312 2515 4.999950 CACTTGAGTTAGCTCCAACAGATT 59.000 41.667 3.94 0.00 40.95 2.40
2333 2536 2.552743 GGTTTTTAGTCTCCTGGTGCAC 59.447 50.000 8.80 8.80 0.00 4.57
2335 2538 2.858745 TGGTTTTTAGTCTCCTGGTGC 58.141 47.619 0.00 0.00 0.00 5.01
2338 2541 2.820197 GGCTTGGTTTTTAGTCTCCTGG 59.180 50.000 0.00 0.00 0.00 4.45
2384 2588 1.721926 GTCATCTTTATAGCGGCGCTC 59.278 52.381 39.97 16.18 40.44 5.03
2385 2589 1.068588 TGTCATCTTTATAGCGGCGCT 59.931 47.619 37.84 37.84 43.41 5.92
2386 2590 1.192534 GTGTCATCTTTATAGCGGCGC 59.807 52.381 26.86 26.86 0.00 6.53
2387 2591 2.472861 CAGTGTCATCTTTATAGCGGCG 59.527 50.000 0.51 0.51 0.00 6.46
2388 2592 3.458189 ACAGTGTCATCTTTATAGCGGC 58.542 45.455 0.00 0.00 0.00 6.53
2389 2593 4.051922 GGACAGTGTCATCTTTATAGCGG 58.948 47.826 24.20 0.00 33.68 5.52
2390 2594 3.731216 CGGACAGTGTCATCTTTATAGCG 59.269 47.826 24.20 10.65 33.68 4.26
2391 2595 4.051922 CCGGACAGTGTCATCTTTATAGC 58.948 47.826 24.20 2.50 33.68 2.97
2392 2596 4.051922 GCCGGACAGTGTCATCTTTATAG 58.948 47.826 24.20 3.54 33.68 1.31
2393 2597 3.181469 GGCCGGACAGTGTCATCTTTATA 60.181 47.826 24.20 0.00 33.68 0.98
2394 2598 2.420129 GGCCGGACAGTGTCATCTTTAT 60.420 50.000 24.20 0.00 33.68 1.40
2395 2599 1.066430 GGCCGGACAGTGTCATCTTTA 60.066 52.381 24.20 0.00 33.68 1.85
2396 2600 0.321653 GGCCGGACAGTGTCATCTTT 60.322 55.000 24.20 0.00 33.68 2.52
2397 2601 1.296715 GGCCGGACAGTGTCATCTT 59.703 57.895 24.20 0.00 33.68 2.40
2398 2602 2.982130 GGCCGGACAGTGTCATCT 59.018 61.111 24.20 0.00 33.68 2.90
2399 2603 2.298158 ATCGGCCGGACAGTGTCATC 62.298 60.000 27.83 11.95 33.68 2.92
2400 2604 1.899437 AATCGGCCGGACAGTGTCAT 61.899 55.000 27.83 4.59 33.68 3.06
2401 2605 2.107041 AAATCGGCCGGACAGTGTCA 62.107 55.000 27.83 1.69 33.68 3.58
2402 2606 0.953960 AAAATCGGCCGGACAGTGTC 60.954 55.000 27.83 15.24 0.00 3.67
2403 2607 1.072505 AAAATCGGCCGGACAGTGT 59.927 52.632 27.83 0.00 0.00 3.55
2404 2608 0.953471 TCAAAATCGGCCGGACAGTG 60.953 55.000 27.83 16.91 0.00 3.66
2405 2609 0.673644 CTCAAAATCGGCCGGACAGT 60.674 55.000 27.83 1.30 0.00 3.55
2406 2610 0.391130 TCTCAAAATCGGCCGGACAG 60.391 55.000 27.83 12.72 0.00 3.51
2407 2611 0.672401 GTCTCAAAATCGGCCGGACA 60.672 55.000 27.83 6.34 0.00 4.02
2408 2612 1.693083 CGTCTCAAAATCGGCCGGAC 61.693 60.000 27.83 20.64 0.00 4.79
2409 2613 1.447140 CGTCTCAAAATCGGCCGGA 60.447 57.895 27.83 13.37 0.00 5.14
2410 2614 0.810031 ATCGTCTCAAAATCGGCCGG 60.810 55.000 27.83 8.93 0.00 6.13
2411 2615 0.301687 CATCGTCTCAAAATCGGCCG 59.698 55.000 22.12 22.12 0.00 6.13
2412 2616 0.028110 GCATCGTCTCAAAATCGGCC 59.972 55.000 0.00 0.00 0.00 6.13
2413 2617 0.028110 GGCATCGTCTCAAAATCGGC 59.972 55.000 0.00 0.00 0.00 5.54
2414 2618 1.368641 TGGCATCGTCTCAAAATCGG 58.631 50.000 0.00 0.00 0.00 4.18
2415 2619 3.063861 TGAATGGCATCGTCTCAAAATCG 59.936 43.478 0.00 0.00 0.00 3.34
2416 2620 4.621068 TGAATGGCATCGTCTCAAAATC 57.379 40.909 0.00 0.00 0.00 2.17
2417 2621 5.179045 GATGAATGGCATCGTCTCAAAAT 57.821 39.130 0.00 0.00 43.57 1.82
2418 2622 4.621068 GATGAATGGCATCGTCTCAAAA 57.379 40.909 0.00 0.00 43.57 2.44
2428 2632 1.414919 GCATGGTTGGATGAATGGCAT 59.585 47.619 0.00 0.00 40.77 4.40
2429 2633 0.825410 GCATGGTTGGATGAATGGCA 59.175 50.000 0.00 0.00 0.00 4.92
2430 2634 0.825410 TGCATGGTTGGATGAATGGC 59.175 50.000 0.00 0.00 0.00 4.40
2444 2648 0.738975 CTTGCTCCTCACCATGCATG 59.261 55.000 20.19 20.19 35.27 4.06
2445 2649 0.330604 ACTTGCTCCTCACCATGCAT 59.669 50.000 0.00 0.00 35.27 3.96
2446 2650 0.607217 CACTTGCTCCTCACCATGCA 60.607 55.000 0.00 0.00 0.00 3.96
2447 2651 0.607489 ACACTTGCTCCTCACCATGC 60.607 55.000 0.00 0.00 0.00 4.06
2448 2652 1.271001 TGACACTTGCTCCTCACCATG 60.271 52.381 0.00 0.00 0.00 3.66
2449 2653 1.059098 TGACACTTGCTCCTCACCAT 58.941 50.000 0.00 0.00 0.00 3.55
2450 2654 0.106708 GTGACACTTGCTCCTCACCA 59.893 55.000 0.00 0.00 0.00 4.17
2451 2655 0.106708 TGTGACACTTGCTCCTCACC 59.893 55.000 7.20 0.00 33.46 4.02
2452 2656 1.221414 GTGTGACACTTGCTCCTCAC 58.779 55.000 8.76 0.00 34.74 3.51
2453 2657 0.249447 CGTGTGACACTTGCTCCTCA 60.249 55.000 14.42 0.00 31.34 3.86
2454 2658 0.946221 CCGTGTGACACTTGCTCCTC 60.946 60.000 14.42 0.00 31.34 3.71
2455 2659 1.069765 CCGTGTGACACTTGCTCCT 59.930 57.895 14.42 0.00 31.34 3.69
2456 2660 2.607892 GCCGTGTGACACTTGCTCC 61.608 63.158 14.42 0.00 31.34 4.70
2457 2661 2.607892 GGCCGTGTGACACTTGCTC 61.608 63.158 20.92 11.28 32.86 4.26
2458 2662 2.591715 GGCCGTGTGACACTTGCT 60.592 61.111 20.92 0.00 32.86 3.91
2459 2663 4.012895 CGGCCGTGTGACACTTGC 62.013 66.667 19.50 15.20 31.34 4.01
2460 2664 4.012895 GCGGCCGTGTGACACTTG 62.013 66.667 28.70 5.98 31.34 3.16
2461 2665 4.235762 AGCGGCCGTGTGACACTT 62.236 61.111 28.70 0.00 31.34 3.16
2462 2666 4.969196 CAGCGGCCGTGTGACACT 62.969 66.667 28.70 10.48 31.34 3.55
2465 2669 4.760047 ATCCAGCGGCCGTGTGAC 62.760 66.667 28.70 9.61 0.00 3.67
2466 2670 4.451150 GATCCAGCGGCCGTGTGA 62.451 66.667 28.70 20.06 0.00 3.58
2467 2671 4.758251 TGATCCAGCGGCCGTGTG 62.758 66.667 28.70 23.35 0.00 3.82
2468 2672 4.457496 CTGATCCAGCGGCCGTGT 62.457 66.667 28.70 12.19 0.00 4.49
2472 2676 4.101448 ACACCTGATCCAGCGGCC 62.101 66.667 0.00 0.00 0.00 6.13
2473 2677 2.512515 GACACCTGATCCAGCGGC 60.513 66.667 0.00 0.00 0.00 6.53
2474 2678 2.202797 CGACACCTGATCCAGCGG 60.203 66.667 0.00 0.00 0.00 5.52
2475 2679 1.517257 GACGACACCTGATCCAGCG 60.517 63.158 0.00 0.00 0.00 5.18
2476 2680 0.459237 CAGACGACACCTGATCCAGC 60.459 60.000 0.00 0.00 33.65 4.85
2477 2681 1.177401 TCAGACGACACCTGATCCAG 58.823 55.000 0.00 0.00 35.89 3.86
2478 2682 1.627864 TTCAGACGACACCTGATCCA 58.372 50.000 0.00 0.00 40.02 3.41
2479 2683 2.743636 TTTCAGACGACACCTGATCC 57.256 50.000 0.00 0.00 40.02 3.36
2480 2684 3.304559 CGATTTTCAGACGACACCTGATC 59.695 47.826 0.00 0.00 40.02 2.92
2481 2685 3.254060 CGATTTTCAGACGACACCTGAT 58.746 45.455 0.00 0.00 40.02 2.90
2482 2686 2.035449 ACGATTTTCAGACGACACCTGA 59.965 45.455 0.00 0.00 38.74 3.86
2483 2687 2.404215 ACGATTTTCAGACGACACCTG 58.596 47.619 0.00 0.00 0.00 4.00
2484 2688 2.814280 ACGATTTTCAGACGACACCT 57.186 45.000 0.00 0.00 0.00 4.00
2485 2689 2.798283 TGAACGATTTTCAGACGACACC 59.202 45.455 0.00 0.00 0.00 4.16
2486 2690 3.362693 GGTGAACGATTTTCAGACGACAC 60.363 47.826 0.00 0.00 37.26 3.67
2487 2691 2.798283 GGTGAACGATTTTCAGACGACA 59.202 45.455 0.00 0.00 0.00 4.35
2488 2692 3.435262 GGTGAACGATTTTCAGACGAC 57.565 47.619 0.00 0.00 0.00 4.34
2508 2712 2.904747 CTACTCTGCGCCGACACTCG 62.905 65.000 4.18 0.00 40.07 4.18
2509 2713 1.226435 CTACTCTGCGCCGACACTC 60.226 63.158 4.18 0.00 0.00 3.51
2510 2714 1.524863 AACTACTCTGCGCCGACACT 61.525 55.000 4.18 0.00 0.00 3.55
2511 2715 1.071567 GAACTACTCTGCGCCGACAC 61.072 60.000 4.18 0.00 0.00 3.67
2512 2716 1.211969 GAACTACTCTGCGCCGACA 59.788 57.895 4.18 0.00 0.00 4.35
2513 2717 1.516603 GGAACTACTCTGCGCCGAC 60.517 63.158 4.18 0.00 0.00 4.79
2514 2718 1.974875 TGGAACTACTCTGCGCCGA 60.975 57.895 4.18 2.10 0.00 5.54
2515 2719 1.805945 GTGGAACTACTCTGCGCCG 60.806 63.158 4.18 0.00 0.00 6.46
2516 2720 1.805945 CGTGGAACTACTCTGCGCC 60.806 63.158 4.18 0.00 31.75 6.53
2517 2721 2.445438 GCGTGGAACTACTCTGCGC 61.445 63.158 0.00 0.00 38.90 6.09
2518 2722 0.666274 TTGCGTGGAACTACTCTGCG 60.666 55.000 0.00 0.00 31.75 5.18
2519 2723 1.508632 TTTGCGTGGAACTACTCTGC 58.491 50.000 0.00 0.00 31.75 4.26
2520 2724 4.749245 AATTTTGCGTGGAACTACTCTG 57.251 40.909 0.00 0.00 31.75 3.35
2521 2725 5.108385 CAAATTTTGCGTGGAACTACTCT 57.892 39.130 0.00 0.00 31.75 3.24
2554 2758 5.707931 ACGAGTAGTAAGAACAAGGTTAGC 58.292 41.667 0.00 0.00 0.00 3.09
2569 2773 5.414360 TCATGTTAGTCTCGTACGAGTAGT 58.586 41.667 36.67 27.76 42.49 2.73
2570 2774 5.519566 ACTCATGTTAGTCTCGTACGAGTAG 59.480 44.000 36.67 23.16 42.49 2.57
2574 2778 5.414360 ACTACTCATGTTAGTCTCGTACGA 58.586 41.667 18.41 18.41 0.00 3.43
2575 2779 5.715429 ACTACTCATGTTAGTCTCGTACG 57.285 43.478 9.53 9.53 0.00 3.67
2576 2780 7.531280 TGTACTACTCATGTTAGTCTCGTAC 57.469 40.000 11.51 11.26 33.23 3.67
2577 2781 8.202811 AGATGTACTACTCATGTTAGTCTCGTA 58.797 37.037 11.51 1.91 0.00 3.43
2578 2782 7.049133 AGATGTACTACTCATGTTAGTCTCGT 58.951 38.462 11.51 8.74 0.00 4.18
2579 2783 7.485418 AGATGTACTACTCATGTTAGTCTCG 57.515 40.000 11.51 0.00 0.00 4.04
2580 2784 9.724839 GAAAGATGTACTACTCATGTTAGTCTC 57.275 37.037 11.51 8.55 30.55 3.36
2581 2785 9.244292 TGAAAGATGTACTACTCATGTTAGTCT 57.756 33.333 11.51 3.09 30.55 3.24
2596 2800 6.108687 TGATGTCACTCCATGAAAGATGTAC 58.891 40.000 0.00 0.00 39.72 2.90
2598 2802 5.169992 TGATGTCACTCCATGAAAGATGT 57.830 39.130 0.00 0.00 39.72 3.06
2601 2805 5.233083 ACTTGATGTCACTCCATGAAAGA 57.767 39.130 0.00 0.00 39.72 2.52
2639 2843 4.598807 ACAGATTGATGTATGCCCCTATCA 59.401 41.667 0.00 0.00 0.00 2.15
2645 2849 3.062763 CTCGACAGATTGATGTATGCCC 58.937 50.000 0.00 0.00 32.25 5.36
2646 2850 3.062763 CCTCGACAGATTGATGTATGCC 58.937 50.000 0.00 0.00 32.25 4.40
2649 2853 4.402474 TGTGACCTCGACAGATTGATGTAT 59.598 41.667 0.00 0.00 32.25 2.29
2652 2856 2.926200 GTGTGACCTCGACAGATTGATG 59.074 50.000 0.00 0.00 0.00 3.07
2656 2860 0.388649 GCGTGTGACCTCGACAGATT 60.389 55.000 1.85 0.00 0.00 2.40
2660 2864 0.599060 TAATGCGTGTGACCTCGACA 59.401 50.000 1.85 0.73 0.00 4.35
2662 2866 0.885879 AGTAATGCGTGTGACCTCGA 59.114 50.000 1.85 0.00 0.00 4.04
2672 2876 3.951663 AGGCTTTTTCCTAGTAATGCGT 58.048 40.909 0.00 0.00 33.95 5.24
2673 2877 5.353123 TGTTAGGCTTTTTCCTAGTAATGCG 59.647 40.000 0.00 0.00 39.66 4.73
2674 2878 6.678164 GCTGTTAGGCTTTTTCCTAGTAATGC 60.678 42.308 0.00 0.00 39.66 3.56
2675 2879 6.374333 TGCTGTTAGGCTTTTTCCTAGTAATG 59.626 38.462 0.00 0.00 39.66 1.90
2676 2880 6.481643 TGCTGTTAGGCTTTTTCCTAGTAAT 58.518 36.000 0.00 0.00 39.66 1.89
2677 2881 5.871834 TGCTGTTAGGCTTTTTCCTAGTAA 58.128 37.500 0.00 0.00 39.66 2.24
2678 2882 5.012768 ACTGCTGTTAGGCTTTTTCCTAGTA 59.987 40.000 0.00 0.00 39.66 1.82
2679 2883 4.202472 ACTGCTGTTAGGCTTTTTCCTAGT 60.202 41.667 0.00 0.00 39.66 2.57
2680 2884 4.154918 CACTGCTGTTAGGCTTTTTCCTAG 59.845 45.833 0.00 0.00 39.66 3.02
2681 2885 4.072131 CACTGCTGTTAGGCTTTTTCCTA 58.928 43.478 0.00 0.00 37.66 2.94
2682 2886 2.887152 CACTGCTGTTAGGCTTTTTCCT 59.113 45.455 0.00 0.00 40.21 3.36
2683 2887 2.608016 GCACTGCTGTTAGGCTTTTTCC 60.608 50.000 0.00 0.00 0.00 3.13
2684 2888 2.666026 GCACTGCTGTTAGGCTTTTTC 58.334 47.619 0.00 0.00 0.00 2.29
2685 2889 1.001378 CGCACTGCTGTTAGGCTTTTT 60.001 47.619 0.00 0.00 0.00 1.94
2686 2890 0.593128 CGCACTGCTGTTAGGCTTTT 59.407 50.000 0.00 0.00 0.00 2.27
2687 2891 1.237285 CCGCACTGCTGTTAGGCTTT 61.237 55.000 0.00 0.00 0.00 3.51
2688 2892 1.672356 CCGCACTGCTGTTAGGCTT 60.672 57.895 0.00 0.00 0.00 4.35
2689 2893 2.046892 CCGCACTGCTGTTAGGCT 60.047 61.111 0.00 0.00 0.00 4.58
2690 2894 3.127533 CCCGCACTGCTGTTAGGC 61.128 66.667 0.00 2.39 0.00 3.93
2691 2895 0.889186 AAACCCGCACTGCTGTTAGG 60.889 55.000 0.00 0.33 0.00 2.69
2692 2896 0.951558 AAAACCCGCACTGCTGTTAG 59.048 50.000 0.00 0.00 0.00 2.34
2693 2897 2.147958 CTAAAACCCGCACTGCTGTTA 58.852 47.619 0.00 0.00 0.00 2.41
2694 2898 0.951558 CTAAAACCCGCACTGCTGTT 59.048 50.000 0.00 0.00 0.00 3.16
2695 2899 0.889186 CCTAAAACCCGCACTGCTGT 60.889 55.000 0.00 0.00 0.00 4.40
2696 2900 0.889186 ACCTAAAACCCGCACTGCTG 60.889 55.000 0.00 0.00 0.00 4.41
2697 2901 0.688487 TACCTAAAACCCGCACTGCT 59.312 50.000 0.00 0.00 0.00 4.24
2698 2902 1.746470 ATACCTAAAACCCGCACTGC 58.254 50.000 0.00 0.00 0.00 4.40
2699 2903 2.870411 GCTATACCTAAAACCCGCACTG 59.130 50.000 0.00 0.00 0.00 3.66
2700 2904 2.502538 TGCTATACCTAAAACCCGCACT 59.497 45.455 0.00 0.00 0.00 4.40
2701 2905 2.870411 CTGCTATACCTAAAACCCGCAC 59.130 50.000 0.00 0.00 0.00 5.34
2702 2906 2.502538 ACTGCTATACCTAAAACCCGCA 59.497 45.455 0.00 0.00 0.00 5.69
2703 2907 3.189618 ACTGCTATACCTAAAACCCGC 57.810 47.619 0.00 0.00 0.00 6.13
2704 2908 4.304939 GCTACTGCTATACCTAAAACCCG 58.695 47.826 0.00 0.00 36.03 5.28
2705 2909 4.304939 CGCTACTGCTATACCTAAAACCC 58.695 47.826 0.00 0.00 36.97 4.11
2706 2910 3.739810 GCGCTACTGCTATACCTAAAACC 59.260 47.826 0.00 0.00 36.97 3.27
2707 2911 3.424529 CGCGCTACTGCTATACCTAAAAC 59.575 47.826 5.56 0.00 36.97 2.43
2708 2912 3.551454 CCGCGCTACTGCTATACCTAAAA 60.551 47.826 5.56 0.00 36.97 1.52
2709 2913 2.030540 CCGCGCTACTGCTATACCTAAA 60.031 50.000 5.56 0.00 36.97 1.85
2710 2914 1.538512 CCGCGCTACTGCTATACCTAA 59.461 52.381 5.56 0.00 36.97 2.69
2711 2915 1.162698 CCGCGCTACTGCTATACCTA 58.837 55.000 5.56 0.00 36.97 3.08
2712 2916 0.536687 TCCGCGCTACTGCTATACCT 60.537 55.000 5.56 0.00 36.97 3.08
2713 2917 0.109689 CTCCGCGCTACTGCTATACC 60.110 60.000 5.56 0.00 36.97 2.73
2714 2918 0.592148 ACTCCGCGCTACTGCTATAC 59.408 55.000 5.56 0.00 36.97 1.47
2715 2919 0.873054 GACTCCGCGCTACTGCTATA 59.127 55.000 5.56 0.00 36.97 1.31
2716 2920 1.655329 GACTCCGCGCTACTGCTAT 59.345 57.895 5.56 0.00 36.97 2.97
2717 2921 2.478890 GGACTCCGCGCTACTGCTA 61.479 63.158 5.56 0.00 36.97 3.49
2718 2922 3.827898 GGACTCCGCGCTACTGCT 61.828 66.667 5.56 0.00 36.97 4.24
2719 2923 4.874977 GGGACTCCGCGCTACTGC 62.875 72.222 5.56 0.00 0.00 4.40
2729 2933 1.170919 TATCAGTAGCGCGGGACTCC 61.171 60.000 8.83 0.00 0.00 3.85
2730 2934 0.040246 GTATCAGTAGCGCGGGACTC 60.040 60.000 8.83 0.00 0.00 3.36
2731 2935 1.783031 CGTATCAGTAGCGCGGGACT 61.783 60.000 8.83 4.04 0.00 3.85
2732 2936 1.370172 CGTATCAGTAGCGCGGGAC 60.370 63.158 8.83 1.25 0.00 4.46
2733 2937 2.549198 CCGTATCAGTAGCGCGGGA 61.549 63.158 8.83 0.00 38.86 5.14
2734 2938 2.050351 CCGTATCAGTAGCGCGGG 60.050 66.667 8.83 0.00 38.86 6.13
2735 2939 2.729862 GCCGTATCAGTAGCGCGG 60.730 66.667 8.83 0.00 44.60 6.46
2736 2940 3.091628 CGCCGTATCAGTAGCGCG 61.092 66.667 0.00 0.00 42.31 6.86
2739 2943 0.309922 TGTAGCGCCGTATCAGTAGC 59.690 55.000 2.29 0.00 0.00 3.58
2740 2944 2.033049 AGTTGTAGCGCCGTATCAGTAG 59.967 50.000 2.29 0.00 0.00 2.57
2741 2945 2.019249 AGTTGTAGCGCCGTATCAGTA 58.981 47.619 2.29 0.00 0.00 2.74
2742 2946 0.815734 AGTTGTAGCGCCGTATCAGT 59.184 50.000 2.29 0.00 0.00 3.41
2743 2947 2.768833 TAGTTGTAGCGCCGTATCAG 57.231 50.000 2.29 0.00 0.00 2.90
2744 2948 2.480073 GGTTAGTTGTAGCGCCGTATCA 60.480 50.000 2.29 0.00 0.00 2.15
2745 2949 2.122564 GGTTAGTTGTAGCGCCGTATC 58.877 52.381 2.29 0.00 0.00 2.24
2746 2950 1.753073 AGGTTAGTTGTAGCGCCGTAT 59.247 47.619 2.29 0.00 0.00 3.06
2747 2951 1.135315 CAGGTTAGTTGTAGCGCCGTA 60.135 52.381 2.29 0.00 0.00 4.02
2748 2952 0.389426 CAGGTTAGTTGTAGCGCCGT 60.389 55.000 2.29 0.00 0.00 5.68
2749 2953 0.389426 ACAGGTTAGTTGTAGCGCCG 60.389 55.000 2.29 0.00 0.00 6.46
2750 2954 2.537401 CTACAGGTTAGTTGTAGCGCC 58.463 52.381 2.29 0.00 40.90 6.53
2754 2958 4.177026 CTGCTGCTACAGGTTAGTTGTAG 58.823 47.826 0.00 7.80 46.82 2.74
2755 2959 3.616560 GCTGCTGCTACAGGTTAGTTGTA 60.617 47.826 8.53 0.00 38.16 2.41
2756 2960 2.872038 GCTGCTGCTACAGGTTAGTTGT 60.872 50.000 8.53 0.00 38.16 3.32
2757 2961 1.734465 GCTGCTGCTACAGGTTAGTTG 59.266 52.381 8.53 0.00 38.16 3.16
2758 2962 1.673033 CGCTGCTGCTACAGGTTAGTT 60.673 52.381 14.03 0.00 38.16 2.24
2759 2963 0.108615 CGCTGCTGCTACAGGTTAGT 60.109 55.000 14.03 0.00 38.16 2.24
2760 2964 2.670635 CGCTGCTGCTACAGGTTAG 58.329 57.895 14.03 0.00 38.16 2.34
2761 2965 4.910956 CGCTGCTGCTACAGGTTA 57.089 55.556 14.03 0.00 38.16 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.