Multiple sequence alignment - TraesCS4A01G113700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G113700 chr4A 100.000 6862 0 0 1 6862 137956241 137963102 0.000000e+00 12672.0
1 TraesCS4A01G113700 chr4A 94.815 135 7 0 1744 1878 513375876 513376010 1.940000e-50 211.0
2 TraesCS4A01G113700 chr4A 93.431 137 7 2 1750 1886 596468904 596468770 1.170000e-47 202.0
3 TraesCS4A01G113700 chr4D 94.540 2784 107 16 1931 4692 335047722 335044962 0.000000e+00 4257.0
4 TraesCS4A01G113700 chr4D 95.114 1228 50 7 4693 5911 335044871 335043645 0.000000e+00 1927.0
5 TraesCS4A01G113700 chr4D 93.054 835 38 12 675 1505 335048683 335047865 0.000000e+00 1203.0
6 TraesCS4A01G113700 chr4D 98.138 537 10 0 1 537 490594840 490595376 0.000000e+00 937.0
7 TraesCS4A01G113700 chr4D 88.831 770 39 17 5897 6662 335043606 335042880 0.000000e+00 902.0
8 TraesCS4A01G113700 chr4D 87.166 187 17 3 6679 6862 335042736 335042554 9.020000e-49 206.0
9 TraesCS4A01G113700 chr4D 92.806 139 8 2 1499 1636 344231970 344231833 4.200000e-47 200.0
10 TraesCS4A01G113700 chr4D 89.565 115 8 1 564 678 335049026 335048916 7.170000e-30 143.0
11 TraesCS4A01G113700 chr4B 93.416 1853 70 14 1875 3698 413123196 413121367 0.000000e+00 2699.0
12 TraesCS4A01G113700 chr4B 93.717 1512 66 17 4425 5913 413120361 413118856 0.000000e+00 2239.0
13 TraesCS4A01G113700 chr4B 90.646 759 39 10 5897 6653 413118821 413118093 0.000000e+00 979.0
14 TraesCS4A01G113700 chr4B 96.514 545 17 2 3830 4372 413121012 413120468 0.000000e+00 900.0
15 TraesCS4A01G113700 chr4B 94.139 563 29 4 889 1447 413124197 413123635 0.000000e+00 854.0
16 TraesCS4A01G113700 chr4B 90.775 271 19 5 595 860 413124461 413124192 2.350000e-94 357.0
17 TraesCS4A01G113700 chr4B 94.581 203 8 3 3684 3883 413121199 413120997 1.860000e-80 311.0
18 TraesCS4A01G113700 chr4B 95.495 111 5 0 1627 1737 413123309 413123199 1.970000e-40 178.0
19 TraesCS4A01G113700 chr5A 98.519 135 2 0 1501 1635 537777066 537777200 8.890000e-59 239.0
20 TraesCS4A01G113700 chr7A 96.154 130 5 0 1747 1876 409866207 409866078 5.390000e-51 213.0
21 TraesCS4A01G113700 chr3A 96.154 130 5 0 1747 1876 57867684 57867555 5.390000e-51 213.0
22 TraesCS4A01G113700 chr3A 91.781 146 9 3 1736 1881 547196126 547195984 4.200000e-47 200.0
23 TraesCS4A01G113700 chr2B 95.489 133 6 0 1746 1878 89552369 89552501 5.390000e-51 213.0
24 TraesCS4A01G113700 chr2B 92.806 139 7 3 1499 1636 646471877 646471741 1.510000e-46 198.0
25 TraesCS4A01G113700 chr7B 95.420 131 6 0 1747 1877 429195465 429195335 6.970000e-50 209.0
26 TraesCS4A01G113700 chr7B 93.478 138 6 3 1501 1636 579349523 579349387 1.170000e-47 202.0
27 TraesCS4A01G113700 chr1A 94.815 135 6 1 1750 1883 378182948 378182814 6.970000e-50 209.0
28 TraesCS4A01G113700 chr1A 100.000 28 0 0 1 28 560305840 560305867 1.200000e-02 52.8
29 TraesCS4A01G113700 chr5B 96.094 128 4 1 1503 1630 498828630 498828756 2.510000e-49 207.0
30 TraesCS4A01G113700 chr5B 77.273 154 35 0 1 154 600479316 600479163 2.640000e-14 91.6
31 TraesCS4A01G113700 chr2D 93.478 138 6 3 1503 1638 645613051 645613187 1.170000e-47 202.0
32 TraesCS4A01G113700 chr2D 92.254 142 9 2 1496 1636 601909042 601909182 4.200000e-47 200.0
33 TraesCS4A01G113700 chr3D 92.806 139 8 2 1499 1636 411511629 411511492 4.200000e-47 200.0
34 TraesCS4A01G113700 chr3B 91.216 148 11 2 1733 1879 45946072 45946218 4.200000e-47 200.0
35 TraesCS4A01G113700 chr3B 100.000 29 0 0 1 29 791878462 791878434 3.000000e-03 54.7
36 TraesCS4A01G113700 chr6D 92.254 142 8 3 1496 1636 247777270 247777131 1.510000e-46 198.0
37 TraesCS4A01G113700 chr1B 100.000 29 0 0 1 29 25143768 25143796 3.000000e-03 54.7
38 TraesCS4A01G113700 chr1B 100.000 29 0 0 1 29 25242704 25242732 3.000000e-03 54.7
39 TraesCS4A01G113700 chr5D 96.875 32 0 1 1 31 507192986 507193017 1.200000e-02 52.8
40 TraesCS4A01G113700 chr1D 100.000 28 0 0 1 28 339754039 339754066 1.200000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G113700 chr4A 137956241 137963102 6861 False 12672.000000 12672 100.000000 1 6862 1 chr4A.!!$F1 6861
1 TraesCS4A01G113700 chr4D 335042554 335049026 6472 True 1439.666667 4257 91.378333 564 6862 6 chr4D.!!$R2 6298
2 TraesCS4A01G113700 chr4D 490594840 490595376 536 False 937.000000 937 98.138000 1 537 1 chr4D.!!$F1 536
3 TraesCS4A01G113700 chr4B 413118093 413124461 6368 True 1064.625000 2699 93.660375 595 6653 8 chr4B.!!$R1 6058

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
540 541 0.035439 TTCCCTTCCTCACAATCGGC 60.035 55.000 0.00 0.00 0.00 5.54 F
562 563 0.101579 GCTGAGTTCTAGACGCTCCC 59.898 60.000 16.52 7.73 0.00 4.30 F
1303 1552 0.905357 ATGCTAGTTTGGGAGCGAGT 59.095 50.000 0.00 0.00 41.83 4.18 F
1522 2031 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17 F
1525 2034 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 F
1909 2421 0.119561 TAACCTGCCTTGGTAGGGGA 59.880 55.000 24.06 11.18 42.25 4.81 F
1924 2436 0.179936 GGGGAGCAAGATGTCTCAGG 59.820 60.000 0.00 0.00 0.00 3.86 F
1925 2437 0.463474 GGGAGCAAGATGTCTCAGGC 60.463 60.000 0.00 0.00 0.00 4.85 F
1926 2438 0.540923 GGAGCAAGATGTCTCAGGCT 59.459 55.000 4.22 4.22 36.23 4.58 F
2557 3103 0.872388 GTTGTGTTTACCTCAGCGGG 59.128 55.000 0.00 0.00 36.97 6.13 F
2639 3194 0.984230 AGCCTCCGTTTCCATTCTCA 59.016 50.000 0.00 0.00 0.00 3.27 F
4373 5156 1.000163 GGTCTCTCAGCTTCGTTGACA 60.000 52.381 0.00 0.00 0.00 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1503 2012 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59 R
1504 2013 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85 R
2624 3179 1.004161 TGCCATGAGAATGGAAACGGA 59.996 47.619 8.93 0.00 44.39 4.69 R
2817 3373 1.424403 TGGTGACGTACTTGCGATTG 58.576 50.000 0.00 0.00 35.59 2.67 R
2824 3380 4.520179 AGGTTTTCTTTGGTGACGTACTT 58.480 39.130 0.00 0.00 0.00 2.24 R
3870 4653 1.271379 TGCCTTGCAAGAAATCTGCTG 59.729 47.619 28.05 8.52 34.76 4.41 R
4139 4922 4.374399 AGAAGGCACAAAATTCTGCAAAG 58.626 39.130 0.00 0.00 34.90 2.77 R
4215 4998 6.762702 AGACTAGCTTTACCTCTACAGAAC 57.237 41.667 0.00 0.00 0.00 3.01 R
4245 5028 5.407387 TGCATAAAACTAAGACCAACGACTC 59.593 40.000 0.00 0.00 0.00 3.36 R
4348 5131 1.068194 ACGAAGCTGAGAGACCGAAAG 60.068 52.381 0.00 0.00 0.00 2.62 R
4446 5316 2.350057 TGGTATCTCGACTCTGGGAG 57.650 55.000 0.00 0.00 35.52 4.30 R
6493 7547 2.623535 TCACAACTGTTGTTACACGCT 58.376 42.857 22.66 0.00 43.23 5.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 4.388499 GCGGTGCCCCTCGAAAGA 62.388 66.667 0.00 0.00 39.12 2.52
85 86 9.695526 CATTCTTTGATTTGTTCAGACCAATAA 57.304 29.630 0.00 0.00 35.27 1.40
103 104 5.822519 CCAATAAGAACAGCATTAGCACCTA 59.177 40.000 0.00 0.00 45.49 3.08
130 131 3.365472 ACTCTTTTTGGGTCTTGCTTGT 58.635 40.909 0.00 0.00 0.00 3.16
133 134 3.766591 TCTTTTTGGGTCTTGCTTGTCAA 59.233 39.130 0.00 0.00 0.00 3.18
228 229 6.285990 GTTATCGTTAGCATCCCTTTTCCTA 58.714 40.000 0.00 0.00 0.00 2.94
307 308 3.509575 GGCTGATTGAACCACATTACCAA 59.490 43.478 0.00 0.00 0.00 3.67
390 391 1.228894 TCCACTCCAGGAAGCTCGT 60.229 57.895 0.00 0.00 33.93 4.18
431 432 3.127533 GGCAGCATGGACACCGTC 61.128 66.667 0.00 0.00 35.86 4.79
537 538 3.056536 GCCTTTTTCCCTTCCTCACAATC 60.057 47.826 0.00 0.00 0.00 2.67
538 539 3.191371 CCTTTTTCCCTTCCTCACAATCG 59.809 47.826 0.00 0.00 0.00 3.34
539 540 2.489938 TTTCCCTTCCTCACAATCGG 57.510 50.000 0.00 0.00 0.00 4.18
540 541 0.035439 TTCCCTTCCTCACAATCGGC 60.035 55.000 0.00 0.00 0.00 5.54
541 542 0.909610 TCCCTTCCTCACAATCGGCT 60.910 55.000 0.00 0.00 0.00 5.52
542 543 0.830648 CCCTTCCTCACAATCGGCTA 59.169 55.000 0.00 0.00 0.00 3.93
543 544 1.202580 CCCTTCCTCACAATCGGCTAG 60.203 57.143 0.00 0.00 0.00 3.42
544 545 1.576356 CTTCCTCACAATCGGCTAGC 58.424 55.000 6.04 6.04 0.00 3.42
545 546 1.137872 CTTCCTCACAATCGGCTAGCT 59.862 52.381 15.72 0.00 0.00 3.32
546 547 0.461548 TCCTCACAATCGGCTAGCTG 59.538 55.000 17.99 17.99 0.00 4.24
547 548 0.461548 CCTCACAATCGGCTAGCTGA 59.538 55.000 27.89 27.89 35.60 4.26
548 549 1.537776 CCTCACAATCGGCTAGCTGAG 60.538 57.143 29.04 22.98 34.49 3.35
549 550 1.135915 CTCACAATCGGCTAGCTGAGT 59.864 52.381 29.04 24.99 34.49 3.41
550 551 1.550524 TCACAATCGGCTAGCTGAGTT 59.449 47.619 29.04 19.88 34.49 3.01
551 552 1.929836 CACAATCGGCTAGCTGAGTTC 59.070 52.381 29.04 4.39 34.49 3.01
552 553 1.827969 ACAATCGGCTAGCTGAGTTCT 59.172 47.619 29.04 11.72 34.49 3.01
553 554 3.024547 ACAATCGGCTAGCTGAGTTCTA 58.975 45.455 29.04 7.59 34.49 2.10
554 555 3.067461 ACAATCGGCTAGCTGAGTTCTAG 59.933 47.826 29.04 17.70 37.25 2.43
555 556 2.711978 TCGGCTAGCTGAGTTCTAGA 57.288 50.000 22.56 0.00 36.50 2.43
556 557 2.290464 TCGGCTAGCTGAGTTCTAGAC 58.710 52.381 22.56 0.00 38.50 2.59
557 558 2.766970 GGCTAGCTGAGTTCTAGACG 57.233 55.000 15.72 0.00 36.50 4.18
558 559 1.268845 GGCTAGCTGAGTTCTAGACGC 60.269 57.143 15.72 0.00 36.50 5.19
559 560 1.673920 GCTAGCTGAGTTCTAGACGCT 59.326 52.381 7.70 0.00 36.50 5.07
560 561 2.286772 GCTAGCTGAGTTCTAGACGCTC 60.287 54.545 7.70 13.75 36.50 5.03
561 562 1.099689 AGCTGAGTTCTAGACGCTCC 58.900 55.000 16.52 6.43 0.00 4.70
562 563 0.101579 GCTGAGTTCTAGACGCTCCC 59.898 60.000 16.52 7.73 0.00 4.30
602 603 6.022163 AGCCACTGAAATTTCTCTTGATTG 57.978 37.500 18.64 3.34 0.00 2.67
626 627 2.955660 ACCGTGACACACCAATCAAAAT 59.044 40.909 6.37 0.00 0.00 1.82
628 629 3.225548 CGTGACACACCAATCAAAATCG 58.774 45.455 6.37 0.00 0.00 3.34
654 657 1.943293 GGCACGTTCGGTTGCTTAA 59.057 52.632 7.49 0.00 0.00 1.85
697 936 5.105187 TGTCTAATTGATCAGACCTGACAGG 60.105 44.000 20.45 20.45 43.11 4.00
737 976 3.423154 GGCACGGGAAGAACAGCG 61.423 66.667 0.00 0.00 0.00 5.18
747 986 3.730761 GAACAGCGGCTGCACCAG 61.731 66.667 28.80 8.98 46.23 4.00
847 1094 2.608261 CCAAGAGAGAGACACACGGAAC 60.608 54.545 0.00 0.00 0.00 3.62
945 1192 4.329545 GTGGAGCACCCGAGGCAA 62.330 66.667 0.00 0.00 37.93 4.52
1201 1448 2.693591 CTCAGCGAGGATGGGTAACTTA 59.306 50.000 0.00 0.00 0.00 2.24
1220 1467 1.206578 CTAACCAACCAACTGCGCG 59.793 57.895 0.00 0.00 0.00 6.86
1241 1488 2.670251 CCCGTTGGCACCGCTTAA 60.670 61.111 0.00 0.00 0.00 1.85
1242 1489 2.043980 CCCGTTGGCACCGCTTAAT 61.044 57.895 0.00 0.00 0.00 1.40
1243 1490 1.427819 CCGTTGGCACCGCTTAATC 59.572 57.895 0.00 0.00 0.00 1.75
1301 1550 2.037251 GGATATGCTAGTTTGGGAGCGA 59.963 50.000 0.00 0.00 41.83 4.93
1303 1552 0.905357 ATGCTAGTTTGGGAGCGAGT 59.095 50.000 0.00 0.00 41.83 4.18
1340 1589 3.138304 TGAGATCAAACCAACCTGAACG 58.862 45.455 0.00 0.00 0.00 3.95
1469 1978 2.802247 CGCTGACTCAATTGTGAAGTGA 59.198 45.455 14.16 0.01 33.99 3.41
1497 2006 4.868067 TCGTCTCTTGAAAAGTGGAGTAC 58.132 43.478 0.00 0.00 46.34 2.73
1498 2007 4.583489 TCGTCTCTTGAAAAGTGGAGTACT 59.417 41.667 0.00 0.00 46.34 2.73
1499 2008 4.681942 CGTCTCTTGAAAAGTGGAGTACTG 59.318 45.833 0.00 0.00 46.34 2.74
1500 2009 5.602628 GTCTCTTGAAAAGTGGAGTACTGT 58.397 41.667 0.00 0.00 46.34 3.55
1501 2010 6.514541 CGTCTCTTGAAAAGTGGAGTACTGTA 60.515 42.308 0.00 0.00 46.34 2.74
1502 2011 6.864165 GTCTCTTGAAAAGTGGAGTACTGTAG 59.136 42.308 0.00 0.00 46.34 2.74
1503 2012 6.550108 TCTCTTGAAAAGTGGAGTACTGTAGT 59.450 38.462 0.00 0.00 46.34 2.73
1504 2013 7.722728 TCTCTTGAAAAGTGGAGTACTGTAGTA 59.277 37.037 0.00 0.00 46.34 1.82
1514 2023 3.274095 GTACTGTAGTACTCCCTCCGT 57.726 52.381 13.51 0.00 45.47 4.69
1515 2024 2.416680 ACTGTAGTACTCCCTCCGTC 57.583 55.000 0.00 0.00 0.00 4.79
1516 2025 1.064832 ACTGTAGTACTCCCTCCGTCC 60.065 57.143 0.00 0.00 0.00 4.79
1517 2026 0.107508 TGTAGTACTCCCTCCGTCCG 60.108 60.000 0.00 0.00 0.00 4.79
1518 2027 0.817229 GTAGTACTCCCTCCGTCCGG 60.817 65.000 0.00 0.00 0.00 5.14
1519 2028 0.982852 TAGTACTCCCTCCGTCCGGA 60.983 60.000 0.00 0.00 42.90 5.14
1520 2029 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1521 2030 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1522 2031 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1523 2032 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1524 2033 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1525 2034 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1526 2035 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1527 2036 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1528 2037 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1529 2038 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1530 2039 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1531 2040 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1532 2041 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1533 2042 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1534 2043 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1535 2044 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1536 2045 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1537 2046 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1538 2047 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1539 2048 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
1540 2049 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
1541 2050 7.273381 CCGGAAATACTTGTCATCAAAATGAAC 59.727 37.037 0.00 0.00 43.42 3.18
1542 2051 7.807433 CGGAAATACTTGTCATCAAAATGAACA 59.193 33.333 0.00 0.00 43.42 3.18
1543 2052 9.474920 GGAAATACTTGTCATCAAAATGAACAA 57.525 29.630 0.00 0.00 43.42 2.83
1548 2057 8.638685 ACTTGTCATCAAAATGAACAAAAGAG 57.361 30.769 0.00 0.00 43.42 2.85
1549 2058 7.707893 ACTTGTCATCAAAATGAACAAAAGAGG 59.292 33.333 0.00 0.00 43.42 3.69
1550 2059 7.345422 TGTCATCAAAATGAACAAAAGAGGA 57.655 32.000 0.00 0.00 43.42 3.71
1551 2060 7.954835 TGTCATCAAAATGAACAAAAGAGGAT 58.045 30.769 0.00 0.00 43.42 3.24
1552 2061 7.868922 TGTCATCAAAATGAACAAAAGAGGATG 59.131 33.333 0.00 0.00 43.42 3.51
1553 2062 7.869429 GTCATCAAAATGAACAAAAGAGGATGT 59.131 33.333 0.00 0.00 43.42 3.06
1554 2063 9.076781 TCATCAAAATGAACAAAAGAGGATGTA 57.923 29.630 0.00 0.00 38.97 2.29
1555 2064 9.865321 CATCAAAATGAACAAAAGAGGATGTAT 57.135 29.630 0.00 0.00 34.61 2.29
1556 2065 9.865321 ATCAAAATGAACAAAAGAGGATGTATG 57.135 29.630 0.00 0.00 0.00 2.39
1557 2066 8.859090 TCAAAATGAACAAAAGAGGATGTATGT 58.141 29.630 0.00 0.00 0.00 2.29
1560 2069 9.739276 AAATGAACAAAAGAGGATGTATGTAGA 57.261 29.630 0.00 0.00 0.00 2.59
1561 2070 9.911788 AATGAACAAAAGAGGATGTATGTAGAT 57.088 29.630 0.00 0.00 0.00 1.98
1562 2071 8.722480 TGAACAAAAGAGGATGTATGTAGATG 57.278 34.615 0.00 0.00 0.00 2.90
1563 2072 8.321353 TGAACAAAAGAGGATGTATGTAGATGT 58.679 33.333 0.00 0.00 0.00 3.06
1564 2073 9.817809 GAACAAAAGAGGATGTATGTAGATGTA 57.182 33.333 0.00 0.00 0.00 2.29
1617 2126 8.741101 TTCATTTTGATGACAAGTATTTTCGG 57.259 30.769 0.00 0.00 37.32 4.30
1618 2127 8.105097 TCATTTTGATGACAAGTATTTTCGGA 57.895 30.769 0.00 0.00 37.32 4.55
1619 2128 8.020819 TCATTTTGATGACAAGTATTTTCGGAC 58.979 33.333 0.00 0.00 37.32 4.79
1620 2129 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
1621 2130 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
1622 2131 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
1623 2132 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
1624 2133 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1625 2134 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1660 2169 1.168714 CTAGTTGCCACTTTCCCTGC 58.831 55.000 0.00 0.00 34.06 4.85
1693 2202 4.461431 GGATCGGGGTTCAGTTATTTTGTT 59.539 41.667 0.00 0.00 0.00 2.83
1737 2246 5.196341 TCACATGATGGACCGATTAGTAC 57.804 43.478 0.00 0.00 0.00 2.73
1738 2247 3.981416 CACATGATGGACCGATTAGTACG 59.019 47.826 0.00 0.00 0.00 3.67
1739 2248 3.635373 ACATGATGGACCGATTAGTACGT 59.365 43.478 0.00 0.00 0.00 3.57
1740 2249 4.823442 ACATGATGGACCGATTAGTACGTA 59.177 41.667 0.00 0.00 0.00 3.57
1741 2250 4.818534 TGATGGACCGATTAGTACGTAC 57.181 45.455 18.10 18.10 0.00 3.67
1742 2251 4.454678 TGATGGACCGATTAGTACGTACT 58.545 43.478 29.62 29.62 40.24 2.73
1743 2252 4.512944 TGATGGACCGATTAGTACGTACTC 59.487 45.833 30.53 16.28 37.73 2.59
1744 2253 3.206150 TGGACCGATTAGTACGTACTCC 58.794 50.000 30.53 22.65 37.73 3.85
1745 2254 3.118261 TGGACCGATTAGTACGTACTCCT 60.118 47.826 30.53 18.96 37.73 3.69
1746 2255 4.100963 TGGACCGATTAGTACGTACTCCTA 59.899 45.833 30.53 17.60 37.73 2.94
1747 2256 5.221722 TGGACCGATTAGTACGTACTCCTAT 60.222 44.000 30.53 21.09 37.73 2.57
1748 2257 6.014584 TGGACCGATTAGTACGTACTCCTATA 60.015 42.308 30.53 11.23 37.73 1.31
1749 2258 7.044798 GGACCGATTAGTACGTACTCCTATAT 58.955 42.308 30.53 16.62 37.73 0.86
1750 2259 8.198109 GGACCGATTAGTACGTACTCCTATATA 58.802 40.741 30.53 9.71 37.73 0.86
1751 2260 8.934507 ACCGATTAGTACGTACTCCTATATAC 57.065 38.462 30.53 13.38 37.73 1.47
1752 2261 8.754080 ACCGATTAGTACGTACTCCTATATACT 58.246 37.037 30.53 8.49 37.73 2.12
1753 2262 9.243637 CCGATTAGTACGTACTCCTATATACTC 57.756 40.741 30.53 13.98 37.73 2.59
1754 2263 9.243637 CGATTAGTACGTACTCCTATATACTCC 57.756 40.741 30.53 9.51 37.73 3.85
1755 2264 9.541143 GATTAGTACGTACTCCTATATACTCCC 57.459 40.741 30.53 6.82 37.73 4.30
1756 2265 8.671987 TTAGTACGTACTCCTATATACTCCCT 57.328 38.462 30.53 4.94 37.73 4.20
1757 2266 7.181569 AGTACGTACTCCTATATACTCCCTC 57.818 44.000 22.45 0.00 0.00 4.30
1758 2267 6.959366 AGTACGTACTCCTATATACTCCCTCT 59.041 42.308 22.45 0.00 0.00 3.69
1759 2268 6.052405 ACGTACTCCTATATACTCCCTCTG 57.948 45.833 0.00 0.00 0.00 3.35
1760 2269 5.547276 ACGTACTCCTATATACTCCCTCTGT 59.453 44.000 0.00 0.00 0.00 3.41
1761 2270 6.044171 ACGTACTCCTATATACTCCCTCTGTT 59.956 42.308 0.00 0.00 0.00 3.16
1762 2271 6.594937 CGTACTCCTATATACTCCCTCTGTTC 59.405 46.154 0.00 0.00 0.00 3.18
1763 2272 5.894653 ACTCCTATATACTCCCTCTGTTCC 58.105 45.833 0.00 0.00 0.00 3.62
1764 2273 4.919793 TCCTATATACTCCCTCTGTTCCG 58.080 47.826 0.00 0.00 0.00 4.30
1765 2274 4.600547 TCCTATATACTCCCTCTGTTCCGA 59.399 45.833 0.00 0.00 0.00 4.55
1766 2275 5.074102 TCCTATATACTCCCTCTGTTCCGAA 59.926 44.000 0.00 0.00 0.00 4.30
1767 2276 5.952947 CCTATATACTCCCTCTGTTCCGAAT 59.047 44.000 0.00 0.00 0.00 3.34
1768 2277 6.437793 CCTATATACTCCCTCTGTTCCGAATT 59.562 42.308 0.00 0.00 0.00 2.17
1769 2278 7.614583 CCTATATACTCCCTCTGTTCCGAATTA 59.385 40.741 0.00 0.00 0.00 1.40
1770 2279 3.889520 ACTCCCTCTGTTCCGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1771 2280 3.442076 ACTCCCTCTGTTCCGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1772 2281 3.838903 ACTCCCTCTGTTCCGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1773 2282 4.184629 CTCCCTCTGTTCCGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1774 2283 3.581332 TCCCTCTGTTCCGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1775 2284 3.933332 CCCTCTGTTCCGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1776 2285 4.322801 CCCTCTGTTCCGAATTACTTGTCT 60.323 45.833 0.00 0.00 0.00 3.41
1777 2286 5.238583 CCTCTGTTCCGAATTACTTGTCTT 58.761 41.667 0.00 0.00 0.00 3.01
1778 2287 5.120830 CCTCTGTTCCGAATTACTTGTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
1779 2288 5.849510 TCTGTTCCGAATTACTTGTCTTGA 58.150 37.500 0.00 0.00 0.00 3.02
1780 2289 6.285224 TCTGTTCCGAATTACTTGTCTTGAA 58.715 36.000 0.00 0.00 0.00 2.69
1781 2290 6.934645 TCTGTTCCGAATTACTTGTCTTGAAT 59.065 34.615 0.00 0.00 0.00 2.57
1782 2291 7.444183 TCTGTTCCGAATTACTTGTCTTGAATT 59.556 33.333 0.00 0.00 0.00 2.17
1783 2292 7.936584 TGTTCCGAATTACTTGTCTTGAATTT 58.063 30.769 0.00 0.00 0.00 1.82
1784 2293 7.860373 TGTTCCGAATTACTTGTCTTGAATTTG 59.140 33.333 0.00 0.00 0.00 2.32
1785 2294 7.504924 TCCGAATTACTTGTCTTGAATTTGT 57.495 32.000 0.00 0.00 0.00 2.83
1786 2295 7.581476 TCCGAATTACTTGTCTTGAATTTGTC 58.419 34.615 0.00 0.00 0.00 3.18
1787 2296 7.444183 TCCGAATTACTTGTCTTGAATTTGTCT 59.556 33.333 0.00 0.00 0.00 3.41
1788 2297 8.717821 CCGAATTACTTGTCTTGAATTTGTCTA 58.282 33.333 0.00 0.00 0.00 2.59
1789 2298 9.746711 CGAATTACTTGTCTTGAATTTGTCTAG 57.253 33.333 0.00 0.00 0.00 2.43
1794 2303 8.467402 ACTTGTCTTGAATTTGTCTAGATACG 57.533 34.615 0.00 0.00 39.77 3.06
1795 2304 7.545965 ACTTGTCTTGAATTTGTCTAGATACGG 59.454 37.037 0.00 0.00 39.77 4.02
1796 2305 7.165460 TGTCTTGAATTTGTCTAGATACGGA 57.835 36.000 0.00 0.00 39.77 4.69
1797 2306 7.782049 TGTCTTGAATTTGTCTAGATACGGAT 58.218 34.615 0.00 0.00 39.77 4.18
1798 2307 7.706607 TGTCTTGAATTTGTCTAGATACGGATG 59.293 37.037 0.00 0.00 39.77 3.51
1799 2308 7.707035 GTCTTGAATTTGTCTAGATACGGATGT 59.293 37.037 0.00 0.00 39.77 3.06
1800 2309 8.909923 TCTTGAATTTGTCTAGATACGGATGTA 58.090 33.333 0.00 0.00 33.79 2.29
1801 2310 9.698309 CTTGAATTTGTCTAGATACGGATGTAT 57.302 33.333 0.00 0.00 43.97 2.29
1830 2339 9.833917 AAACTTATTTTAGTGCTAGATACCTCC 57.166 33.333 0.00 0.00 0.00 4.30
1831 2340 7.659186 ACTTATTTTAGTGCTAGATACCTCCG 58.341 38.462 0.00 0.00 0.00 4.63
1832 2341 7.287235 ACTTATTTTAGTGCTAGATACCTCCGT 59.713 37.037 0.00 0.00 0.00 4.69
1833 2342 8.696043 TTATTTTAGTGCTAGATACCTCCGTA 57.304 34.615 0.00 0.00 0.00 4.02
1834 2343 7.778185 ATTTTAGTGCTAGATACCTCCGTAT 57.222 36.000 0.00 0.00 37.92 3.06
1835 2344 6.570672 TTTAGTGCTAGATACCTCCGTATG 57.429 41.667 0.00 0.00 35.23 2.39
1836 2345 4.101645 AGTGCTAGATACCTCCGTATGT 57.898 45.455 0.00 0.00 35.23 2.29
1837 2346 5.238624 AGTGCTAGATACCTCCGTATGTA 57.761 43.478 0.00 0.00 35.23 2.29
1838 2347 5.247084 AGTGCTAGATACCTCCGTATGTAG 58.753 45.833 9.10 9.10 45.33 2.74
1839 2348 5.012871 AGTGCTAGATACCTCCGTATGTAGA 59.987 44.000 15.04 2.50 45.36 2.59
1840 2349 5.122082 GTGCTAGATACCTCCGTATGTAGAC 59.878 48.000 15.04 8.95 45.36 2.59
1841 2350 5.221783 TGCTAGATACCTCCGTATGTAGACA 60.222 44.000 15.04 10.68 45.36 3.41
1842 2351 5.704515 GCTAGATACCTCCGTATGTAGACAA 59.295 44.000 15.04 0.00 45.36 3.18
1843 2352 6.206243 GCTAGATACCTCCGTATGTAGACAAA 59.794 42.308 15.04 0.00 45.36 2.83
1844 2353 7.094291 GCTAGATACCTCCGTATGTAGACAAAT 60.094 40.741 15.04 0.00 45.36 2.32
1845 2354 7.216973 AGATACCTCCGTATGTAGACAAATC 57.783 40.000 0.00 0.00 35.23 2.17
1846 2355 7.005296 AGATACCTCCGTATGTAGACAAATCT 58.995 38.462 0.00 0.00 35.23 2.40
1847 2356 8.162085 AGATACCTCCGTATGTAGACAAATCTA 58.838 37.037 0.00 0.00 35.23 1.98
1848 2357 8.701908 ATACCTCCGTATGTAGACAAATCTAA 57.298 34.615 0.00 0.00 39.20 2.10
1849 2358 7.040473 ACCTCCGTATGTAGACAAATCTAAG 57.960 40.000 0.00 0.00 39.20 2.18
1850 2359 6.832384 ACCTCCGTATGTAGACAAATCTAAGA 59.168 38.462 0.00 0.00 39.20 2.10
1851 2360 7.140048 CCTCCGTATGTAGACAAATCTAAGAC 58.860 42.308 0.00 0.00 39.20 3.01
1852 2361 7.201794 CCTCCGTATGTAGACAAATCTAAGACA 60.202 40.741 0.00 0.00 39.20 3.41
1853 2362 8.058667 TCCGTATGTAGACAAATCTAAGACAA 57.941 34.615 0.00 0.00 39.20 3.18
1854 2363 8.188799 TCCGTATGTAGACAAATCTAAGACAAG 58.811 37.037 0.00 0.00 39.20 3.16
1855 2364 7.974501 CCGTATGTAGACAAATCTAAGACAAGT 59.025 37.037 0.00 0.00 39.20 3.16
1856 2365 9.999009 CGTATGTAGACAAATCTAAGACAAGTA 57.001 33.333 0.00 0.00 39.20 2.24
1862 2371 8.480643 AGACAAATCTAAGACAAGTAATTCGG 57.519 34.615 0.00 0.00 31.46 4.30
1863 2372 8.311836 AGACAAATCTAAGACAAGTAATTCGGA 58.688 33.333 0.00 0.00 31.46 4.55
1864 2373 8.842358 ACAAATCTAAGACAAGTAATTCGGAA 57.158 30.769 0.00 0.00 0.00 4.30
1865 2374 8.718734 ACAAATCTAAGACAAGTAATTCGGAAC 58.281 33.333 0.00 0.00 0.00 3.62
1906 2418 2.643551 CATGTAACCTGCCTTGGTAGG 58.356 52.381 19.93 19.93 45.02 3.18
1907 2419 0.988832 TGTAACCTGCCTTGGTAGGG 59.011 55.000 24.06 9.44 42.25 3.53
1909 2421 0.119561 TAACCTGCCTTGGTAGGGGA 59.880 55.000 24.06 11.18 42.25 4.81
1910 2422 1.208165 AACCTGCCTTGGTAGGGGAG 61.208 60.000 24.06 1.58 42.25 4.30
1911 2423 2.592308 CTGCCTTGGTAGGGGAGC 59.408 66.667 0.00 0.00 42.25 4.70
1912 2424 2.204074 TGCCTTGGTAGGGGAGCA 60.204 61.111 0.00 0.00 42.25 4.26
1913 2425 1.850289 TGCCTTGGTAGGGGAGCAA 60.850 57.895 0.00 0.00 43.21 3.91
1918 2430 1.668826 TTGGTAGGGGAGCAAGATGT 58.331 50.000 0.00 0.00 40.60 3.06
1919 2431 1.204146 TGGTAGGGGAGCAAGATGTC 58.796 55.000 0.00 0.00 30.90 3.06
1920 2432 1.273838 TGGTAGGGGAGCAAGATGTCT 60.274 52.381 0.00 0.00 30.90 3.41
1921 2433 1.414550 GGTAGGGGAGCAAGATGTCTC 59.585 57.143 0.00 0.00 0.00 3.36
1922 2434 2.111384 GTAGGGGAGCAAGATGTCTCA 58.889 52.381 0.00 0.00 0.00 3.27
1923 2435 1.202330 AGGGGAGCAAGATGTCTCAG 58.798 55.000 0.00 0.00 0.00 3.35
1924 2436 0.179936 GGGGAGCAAGATGTCTCAGG 59.820 60.000 0.00 0.00 0.00 3.86
1925 2437 0.463474 GGGAGCAAGATGTCTCAGGC 60.463 60.000 0.00 0.00 0.00 4.85
1926 2438 0.540923 GGAGCAAGATGTCTCAGGCT 59.459 55.000 4.22 4.22 36.23 4.58
1927 2439 1.473080 GGAGCAAGATGTCTCAGGCTC 60.473 57.143 16.51 16.51 43.52 4.70
1928 2440 1.481772 GAGCAAGATGTCTCAGGCTCT 59.518 52.381 17.09 0.00 42.19 4.09
1929 2441 1.481772 AGCAAGATGTCTCAGGCTCTC 59.518 52.381 0.00 0.00 30.09 3.20
1962 2487 1.891150 CATTGGTGCTCTTCTTGGCTT 59.109 47.619 0.00 0.00 0.00 4.35
2011 2538 4.572795 TGAATATTCTTTACGCGATTGGCA 59.427 37.500 15.93 0.00 43.84 4.92
2101 2629 4.336993 CGCTATCTAAGTTCCACTCTGTCT 59.663 45.833 0.00 0.00 0.00 3.41
2335 2863 8.248945 TGCGTATAATATAGCCTAGAGGTTTTC 58.751 37.037 0.00 0.00 37.57 2.29
2336 2864 8.248945 GCGTATAATATAGCCTAGAGGTTTTCA 58.751 37.037 0.00 0.00 37.57 2.69
2345 2873 4.192317 CCTAGAGGTTTTCATGTACTGCC 58.808 47.826 0.00 0.00 0.00 4.85
2542 3088 6.998074 TGTTCTTTCATCTGGTCTTATGTTGT 59.002 34.615 0.00 0.00 0.00 3.32
2545 3091 6.998074 TCTTTCATCTGGTCTTATGTTGTGTT 59.002 34.615 0.00 0.00 0.00 3.32
2557 3103 0.872388 GTTGTGTTTACCTCAGCGGG 59.128 55.000 0.00 0.00 36.97 6.13
2560 3106 1.012486 GTGTTTACCTCAGCGGGTCG 61.012 60.000 2.53 0.00 40.48 4.79
2582 3128 4.621747 CGGCCTTTCTTGAGTATCTCACTT 60.622 45.833 0.00 0.00 40.46 3.16
2583 3129 5.394224 CGGCCTTTCTTGAGTATCTCACTTA 60.394 44.000 0.00 0.00 40.46 2.24
2624 3179 9.663365 AAGAAATACTTCCTTAGAGTATAGCCT 57.337 33.333 0.00 0.00 38.91 4.58
2639 3194 0.984230 AGCCTCCGTTTCCATTCTCA 59.016 50.000 0.00 0.00 0.00 3.27
2817 3373 5.221382 TGGTAGGAGTAGCGATAATGGTTTC 60.221 44.000 0.00 0.00 0.00 2.78
2927 3483 9.927668 AGAGACAACCAAAAACCATTATATTTG 57.072 29.630 0.00 0.00 33.62 2.32
2943 3499 8.790718 CATTATATTTGTATCAAGCAGAAGCCT 58.209 33.333 0.00 0.00 43.56 4.58
2998 3554 5.279006 GGATTTGTCTATACCTGCATCTCGA 60.279 44.000 0.00 0.00 0.00 4.04
3004 3560 3.657015 ATACCTGCATCTCGATGACAG 57.343 47.619 10.91 14.72 41.20 3.51
3156 3712 4.458989 TGATTGGATATATTTTCGCCAGCC 59.541 41.667 0.00 0.00 0.00 4.85
3236 3792 7.399523 GTCAATTAAGTACTTTCCAGTATGCG 58.600 38.462 14.49 0.00 37.83 4.73
3284 3840 6.707440 TTAAAACTCCTTCAGTTGCAATCA 57.293 33.333 0.59 0.00 45.32 2.57
3285 3841 5.796424 AAAACTCCTTCAGTTGCAATCAT 57.204 34.783 0.59 0.00 45.32 2.45
3286 3842 5.796424 AAACTCCTTCAGTTGCAATCATT 57.204 34.783 0.59 0.00 45.32 2.57
3556 4112 3.513515 AGTTGTTTGTTTTTGCTGAGGGA 59.486 39.130 0.00 0.00 0.00 4.20
3568 4124 2.224843 TGCTGAGGGAAAAGCAGATGAA 60.225 45.455 0.00 0.00 44.26 2.57
3702 4442 9.084164 GTTAAACTTTCTTTTGTTCTTTCCTCC 57.916 33.333 0.00 0.00 0.00 4.30
3766 4507 2.866762 CTCTTTTGCAGCTACCGGATAC 59.133 50.000 9.46 0.00 0.00 2.24
3770 4511 2.526304 TGCAGCTACCGGATACATTC 57.474 50.000 9.46 0.00 0.00 2.67
3826 4567 5.276489 CGCTATTTTTCCGTCGCAATACTTA 60.276 40.000 0.00 0.00 0.00 2.24
3837 4578 6.697455 CCGTCGCAATACTTATGATATAGCAT 59.303 38.462 8.77 8.77 0.00 3.79
4139 4922 7.410485 GTCTGGCTTGACTAATATTTAACTGC 58.590 38.462 0.00 0.00 34.39 4.40
4168 4951 2.746279 TTTTGTGCCTTCTTGGAGGA 57.254 45.000 0.00 0.00 39.25 3.71
4215 4998 9.186323 CTATAGATATTATTTCCTCGGCATTCG 57.814 37.037 0.00 0.00 40.90 3.34
4245 5028 3.929610 GAGGTAAAGCTAGTCTTGCACAG 59.070 47.826 8.99 0.00 34.67 3.66
4249 5032 3.311486 AAGCTAGTCTTGCACAGAGTC 57.689 47.619 8.99 0.00 36.49 3.36
4268 5051 5.638234 AGAGTCGTTGGTCTTAGTTTTATGC 59.362 40.000 0.00 0.00 0.00 3.14
4348 5131 4.353383 ACTCTGAACCTTTTGAGGGTAC 57.647 45.455 0.00 0.00 35.83 3.34
4366 5149 2.734276 ACTTTCGGTCTCTCAGCTTC 57.266 50.000 0.00 0.00 0.00 3.86
4373 5156 1.000163 GGTCTCTCAGCTTCGTTGACA 60.000 52.381 0.00 0.00 0.00 3.58
4397 5180 5.104982 AGGTTCAGCAAATTTTCTGTCCAAA 60.105 36.000 23.37 9.92 32.55 3.28
4423 5293 3.931768 AGCTCTGCTTGTCTTGGAG 57.068 52.632 0.00 0.00 33.89 3.86
4446 5316 4.830826 AAGAAAATTGAGTCGGAACCAC 57.169 40.909 0.00 0.00 0.00 4.16
4754 5715 6.896613 CGAAGAAACATATTCACAGAATCACG 59.103 38.462 0.00 0.00 0.00 4.35
4811 5772 2.851263 TACAGGGACGATGCAACTTT 57.149 45.000 0.00 0.00 0.00 2.66
4936 5900 9.458374 CTTACAAGTGTAATTTCGAATGGTTTT 57.542 29.630 0.00 0.00 39.49 2.43
4937 5901 9.804758 TTACAAGTGTAATTTCGAATGGTTTTT 57.195 25.926 0.00 0.00 35.75 1.94
5193 6174 6.509199 GCGATGATATGTGAACTGTTTCTCTG 60.509 42.308 0.00 0.00 32.36 3.35
5270 6251 9.218440 CCATTTTAATGCTCTTAAACCACATTT 57.782 29.630 4.83 0.00 35.08 2.32
5330 6311 4.286549 TGGAATTTTGGATCAGTTTGCCAT 59.713 37.500 0.00 0.00 0.00 4.40
5331 6312 4.632688 GGAATTTTGGATCAGTTTGCCATG 59.367 41.667 0.00 0.00 0.00 3.66
5425 6406 5.582550 TGATCTGTACTGCTGTTTATCTCG 58.417 41.667 0.09 0.00 0.00 4.04
5450 6431 8.116753 CGAGACAAACCAGAATTAATGATACAC 58.883 37.037 0.00 0.00 0.00 2.90
5545 6526 2.877168 ACTCCGTATCTGACATACGTCC 59.123 50.000 11.95 0.00 44.00 4.79
5594 6575 3.131396 GTCATTCCCAGTATAAGCCACG 58.869 50.000 0.00 0.00 0.00 4.94
5713 6698 8.877864 TTTTTAATGGTCACTGTGATAGGATT 57.122 30.769 14.37 11.44 0.00 3.01
5796 6784 2.096218 GTCCAGAGCATGTTTGTTCGTC 60.096 50.000 0.00 0.00 38.06 4.20
5837 6825 4.412199 AGTCAGAGCAGAGATACTAGAGGT 59.588 45.833 0.00 0.00 0.00 3.85
5875 6863 9.403583 TGTAAACCACTGAGAAGTAGAAAAATT 57.596 29.630 0.00 0.00 0.00 1.82
5904 6892 5.111989 CCAGTATTGACAGTCATACAGTGG 58.888 45.833 3.45 10.78 0.00 4.00
5990 7031 9.631257 ACCATCAATGAATCATGTATCTTTGTA 57.369 29.630 18.82 11.78 34.27 2.41
5995 7036 9.229784 CAATGAATCATGTATCTTTGTACTTGC 57.770 33.333 0.00 0.00 32.66 4.01
6026 7067 4.342378 TGGTGGAGTATCTGAATGAGCTAC 59.658 45.833 0.00 0.00 33.73 3.58
6044 7087 4.767928 AGCTACTAATGGAGATAAGACCCG 59.232 45.833 0.00 0.00 0.00 5.28
6062 7105 3.394606 ACCCGGTGATCATAATTAAGCCT 59.605 43.478 0.00 0.00 0.00 4.58
6087 7130 1.405661 GGTCCTTACACTACCTGCAGC 60.406 57.143 8.66 0.00 0.00 5.25
6106 7149 2.037772 AGCGCTCTCTTTTTCTCTTCCA 59.962 45.455 2.64 0.00 0.00 3.53
6221 7264 7.773489 TTGGTTCAATTCCAAGTGATTATGA 57.227 32.000 0.00 0.00 39.62 2.15
6222 7265 7.156876 TGGTTCAATTCCAAGTGATTATGAC 57.843 36.000 0.00 0.00 32.61 3.06
6223 7266 6.152661 TGGTTCAATTCCAAGTGATTATGACC 59.847 38.462 2.12 2.12 32.61 4.02
6224 7267 6.152661 GGTTCAATTCCAAGTGATTATGACCA 59.847 38.462 3.72 0.00 32.27 4.02
6225 7268 7.147846 GGTTCAATTCCAAGTGATTATGACCAT 60.148 37.037 3.72 0.00 32.27 3.55
6226 7269 8.902806 GTTCAATTCCAAGTGATTATGACCATA 58.097 33.333 0.00 0.00 32.61 2.74
6227 7270 9.473007 TTCAATTCCAAGTGATTATGACCATAA 57.527 29.630 5.08 5.08 37.64 1.90
6288 7342 6.782082 AGCCCTTGAATTTAGGATTCTTTC 57.218 37.500 8.68 0.00 34.56 2.62
6493 7547 2.101750 TGAAACTGTGTGAAGTCGGCTA 59.898 45.455 0.00 0.00 0.00 3.93
6537 7591 3.071457 TGATGTTGTCTGATCACACAGGT 59.929 43.478 3.94 0.00 38.31 4.00
6577 7631 5.899299 TCCTATGATCTGCATCATACGATG 58.101 41.667 6.01 0.00 46.33 3.84
6702 7885 6.662414 AATGTGGTGTGACGTTATTATGAG 57.338 37.500 0.00 0.00 0.00 2.90
6740 7923 9.605951 ATTATCATAGGGAAGCATGGTAATTTT 57.394 29.630 0.00 0.00 35.77 1.82
6741 7924 6.713762 TCATAGGGAAGCATGGTAATTTTG 57.286 37.500 0.00 0.00 0.00 2.44
6756 7942 2.837532 TTTTGCTTCCTTGCCATTCC 57.162 45.000 0.00 0.00 0.00 3.01
6757 7943 1.714541 TTTGCTTCCTTGCCATTCCA 58.285 45.000 0.00 0.00 0.00 3.53
6759 7945 1.477553 TGCTTCCTTGCCATTCCATC 58.522 50.000 0.00 0.00 0.00 3.51
6762 7948 2.029623 CTTCCTTGCCATTCCATCAGG 58.970 52.381 0.00 0.00 0.00 3.86
6786 7972 4.232221 CAGAAAGTGGTGCAGCTATTTTG 58.768 43.478 18.08 10.45 0.00 2.44
6787 7973 3.891366 AGAAAGTGGTGCAGCTATTTTGT 59.109 39.130 18.08 10.16 0.00 2.83
6788 7974 4.342092 AGAAAGTGGTGCAGCTATTTTGTT 59.658 37.500 18.08 1.71 0.00 2.83
6789 7975 4.670896 AAGTGGTGCAGCTATTTTGTTT 57.329 36.364 18.08 0.00 0.00 2.83
6790 7976 4.670896 AGTGGTGCAGCTATTTTGTTTT 57.329 36.364 18.08 0.00 0.00 2.43
6791 7977 4.620982 AGTGGTGCAGCTATTTTGTTTTC 58.379 39.130 18.08 0.00 0.00 2.29
6792 7978 4.099266 AGTGGTGCAGCTATTTTGTTTTCA 59.901 37.500 18.08 0.00 0.00 2.69
6802 7988 1.327303 TTTGTTTTCATGAGCCGGCT 58.673 45.000 33.48 33.48 0.00 5.52
6820 8006 4.199310 CGGCTCAAGAGGGAATCATTTTA 58.801 43.478 0.00 0.00 0.00 1.52
6826 8012 3.903467 AGAGGGAATCATTTTACTGGCC 58.097 45.455 0.00 0.00 0.00 5.36
6833 8019 3.907894 TCATTTTACTGGCCGTGTTTC 57.092 42.857 6.52 0.00 0.00 2.78
6834 8020 3.215151 TCATTTTACTGGCCGTGTTTCA 58.785 40.909 6.52 0.00 0.00 2.69
6835 8021 3.252215 TCATTTTACTGGCCGTGTTTCAG 59.748 43.478 6.52 0.00 34.91 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 1.257750 TGTGTCTACATCAGCGGGCT 61.258 55.000 0.00 0.00 0.00 5.19
48 49 8.394971 ACAAATCAAAGAATGTGTCTACATCA 57.605 30.769 0.00 0.00 46.54 3.07
85 86 5.365021 AGAATAGGTGCTAATGCTGTTCT 57.635 39.130 0.00 0.00 40.48 3.01
103 104 6.071320 AGCAAGACCCAAAAAGAGTTAGAAT 58.929 36.000 0.00 0.00 0.00 2.40
130 131 0.033601 ATACCGCCAAGCCCATTTGA 60.034 50.000 0.00 0.00 0.00 2.69
133 134 0.751643 GTCATACCGCCAAGCCCATT 60.752 55.000 0.00 0.00 0.00 3.16
390 391 7.392393 GCCTCTAAACTGGTGTTTAAGGATTTA 59.608 37.037 20.55 0.00 44.84 1.40
537 538 1.003331 CGTCTAGAACTCAGCTAGCCG 60.003 57.143 12.13 0.00 36.22 5.52
538 539 1.268845 GCGTCTAGAACTCAGCTAGCC 60.269 57.143 12.13 0.00 36.22 3.93
539 540 1.673920 AGCGTCTAGAACTCAGCTAGC 59.326 52.381 6.62 6.62 36.22 3.42
540 541 2.289547 GGAGCGTCTAGAACTCAGCTAG 59.710 54.545 20.18 0.00 37.32 3.42
541 542 2.290464 GGAGCGTCTAGAACTCAGCTA 58.710 52.381 20.18 0.00 34.85 3.32
542 543 1.099689 GGAGCGTCTAGAACTCAGCT 58.900 55.000 20.18 14.08 37.69 4.24
543 544 0.101579 GGGAGCGTCTAGAACTCAGC 59.898 60.000 20.18 10.44 31.88 4.26
544 545 1.757682 AGGGAGCGTCTAGAACTCAG 58.242 55.000 20.18 2.38 31.88 3.35
545 546 1.819288 CAAGGGAGCGTCTAGAACTCA 59.181 52.381 20.18 0.00 31.88 3.41
546 547 1.819903 ACAAGGGAGCGTCTAGAACTC 59.180 52.381 13.36 13.36 0.00 3.01
547 548 1.926108 ACAAGGGAGCGTCTAGAACT 58.074 50.000 0.00 0.00 0.00 3.01
548 549 2.231721 AGAACAAGGGAGCGTCTAGAAC 59.768 50.000 0.00 0.00 0.00 3.01
549 550 2.526432 AGAACAAGGGAGCGTCTAGAA 58.474 47.619 0.00 0.00 0.00 2.10
550 551 2.217510 AGAACAAGGGAGCGTCTAGA 57.782 50.000 0.00 0.00 0.00 2.43
551 552 4.657436 ATTAGAACAAGGGAGCGTCTAG 57.343 45.455 0.00 0.00 0.00 2.43
552 553 5.046878 TGAAATTAGAACAAGGGAGCGTCTA 60.047 40.000 0.00 0.00 0.00 2.59
553 554 3.983044 AATTAGAACAAGGGAGCGTCT 57.017 42.857 0.00 0.00 0.00 4.18
554 555 4.000988 TGAAATTAGAACAAGGGAGCGTC 58.999 43.478 0.00 0.00 0.00 5.19
555 556 4.015872 TGAAATTAGAACAAGGGAGCGT 57.984 40.909 0.00 0.00 0.00 5.07
556 557 4.635765 TCATGAAATTAGAACAAGGGAGCG 59.364 41.667 0.00 0.00 0.00 5.03
557 558 5.449725 GCTCATGAAATTAGAACAAGGGAGC 60.450 44.000 0.00 0.00 0.00 4.70
558 559 5.067023 GGCTCATGAAATTAGAACAAGGGAG 59.933 44.000 0.00 0.00 0.00 4.30
559 560 4.949856 GGCTCATGAAATTAGAACAAGGGA 59.050 41.667 0.00 0.00 0.00 4.20
560 561 4.706476 TGGCTCATGAAATTAGAACAAGGG 59.294 41.667 0.00 0.00 0.00 3.95
561 562 5.416952 AGTGGCTCATGAAATTAGAACAAGG 59.583 40.000 0.00 0.00 0.00 3.61
562 563 6.149973 TCAGTGGCTCATGAAATTAGAACAAG 59.850 38.462 0.00 0.00 0.00 3.16
590 591 3.003275 GTCACGGTTGCAATCAAGAGAAA 59.997 43.478 10.93 0.00 31.93 2.52
591 592 2.548057 GTCACGGTTGCAATCAAGAGAA 59.452 45.455 10.93 0.00 31.93 2.87
592 593 2.143122 GTCACGGTTGCAATCAAGAGA 58.857 47.619 10.93 0.00 31.93 3.10
593 594 1.872952 TGTCACGGTTGCAATCAAGAG 59.127 47.619 10.93 0.00 31.93 2.85
602 603 0.040425 GATTGGTGTGTCACGGTTGC 60.040 55.000 0.00 0.00 34.83 4.17
626 627 1.081641 GAACGTGCCGAGTTCTCGA 60.082 57.895 21.39 2.01 43.24 4.04
628 629 2.087009 CCGAACGTGCCGAGTTCTC 61.087 63.158 11.52 0.00 44.08 2.87
637 638 1.391787 GTTTAAGCAACCGAACGTGC 58.608 50.000 0.00 0.00 0.00 5.34
654 657 1.374252 GTGACATGCTCCGTCGGTT 60.374 57.895 11.88 0.00 36.11 4.44
661 664 4.507710 TCAATTAGACAGTGACATGCTCC 58.492 43.478 0.00 0.00 0.00 4.70
737 976 4.767255 CTCGGGTCTGGTGCAGCC 62.767 72.222 14.36 5.89 37.90 4.85
863 1110 1.352156 GCTTTGGTCGGCTGACGTAG 61.352 60.000 19.26 15.71 46.49 3.51
864 1111 1.373748 GCTTTGGTCGGCTGACGTA 60.374 57.895 19.26 8.31 46.49 3.57
1201 1448 1.503818 CGCGCAGTTGGTTGGTTAGT 61.504 55.000 8.75 0.00 0.00 2.24
1241 1488 3.864789 AGGAGTGGCCAATTTATCGAT 57.135 42.857 7.24 2.16 40.02 3.59
1242 1489 3.541632 GAAGGAGTGGCCAATTTATCGA 58.458 45.455 7.24 0.00 40.02 3.59
1243 1490 2.287915 CGAAGGAGTGGCCAATTTATCG 59.712 50.000 7.24 13.89 40.02 2.92
1340 1589 2.156504 CGCACGCATCTCCTATCAATTC 59.843 50.000 0.00 0.00 0.00 2.17
1449 1700 4.453478 TCATCACTTCACAATTGAGTCAGC 59.547 41.667 13.59 0.00 31.71 4.26
1469 1978 5.997746 TCCACTTTTCAAGAGACGAAATCAT 59.002 36.000 0.00 0.00 32.66 2.45
1497 2006 1.677942 GGACGGAGGGAGTACTACAG 58.322 60.000 7.57 0.00 0.00 2.74
1498 2007 0.107508 CGGACGGAGGGAGTACTACA 60.108 60.000 7.57 0.00 0.00 2.74
1499 2008 0.817229 CCGGACGGAGGGAGTACTAC 60.817 65.000 4.40 0.00 37.50 2.73
1500 2009 0.982852 TCCGGACGGAGGGAGTACTA 60.983 60.000 9.76 0.00 39.76 1.82
1501 2010 1.856539 TTCCGGACGGAGGGAGTACT 61.857 60.000 13.64 0.00 46.06 2.73
1502 2011 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1503 2012 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1504 2013 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1506 2015 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1508 2017 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1509 2018 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1510 2019 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1511 2020 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1512 2021 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1513 2022 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1514 2023 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
1515 2024 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
1516 2025 7.807433 TGTTCATTTTGATGACAAGTATTTCCG 59.193 33.333 0.00 0.00 37.32 4.30
1517 2026 9.474920 TTGTTCATTTTGATGACAAGTATTTCC 57.525 29.630 0.00 0.00 37.32 3.13
1522 2031 9.734620 CTCTTTTGTTCATTTTGATGACAAGTA 57.265 29.630 0.00 0.00 37.32 2.24
1523 2032 7.707893 CCTCTTTTGTTCATTTTGATGACAAGT 59.292 33.333 0.00 0.00 37.32 3.16
1524 2033 7.922278 TCCTCTTTTGTTCATTTTGATGACAAG 59.078 33.333 0.00 0.00 37.32 3.16
1525 2034 7.780064 TCCTCTTTTGTTCATTTTGATGACAA 58.220 30.769 0.00 0.00 0.00 3.18
1526 2035 7.345422 TCCTCTTTTGTTCATTTTGATGACA 57.655 32.000 0.00 0.00 0.00 3.58
1527 2036 7.869429 ACATCCTCTTTTGTTCATTTTGATGAC 59.131 33.333 0.00 0.00 32.39 3.06
1528 2037 7.954835 ACATCCTCTTTTGTTCATTTTGATGA 58.045 30.769 0.00 0.00 32.39 2.92
1529 2038 9.865321 ATACATCCTCTTTTGTTCATTTTGATG 57.135 29.630 0.00 0.00 33.80 3.07
1530 2039 9.865321 CATACATCCTCTTTTGTTCATTTTGAT 57.135 29.630 0.00 0.00 0.00 2.57
1531 2040 8.859090 ACATACATCCTCTTTTGTTCATTTTGA 58.141 29.630 0.00 0.00 0.00 2.69
1534 2043 9.739276 TCTACATACATCCTCTTTTGTTCATTT 57.261 29.630 0.00 0.00 0.00 2.32
1535 2044 9.911788 ATCTACATACATCCTCTTTTGTTCATT 57.088 29.630 0.00 0.00 0.00 2.57
1536 2045 9.334947 CATCTACATACATCCTCTTTTGTTCAT 57.665 33.333 0.00 0.00 0.00 2.57
1537 2046 8.321353 ACATCTACATACATCCTCTTTTGTTCA 58.679 33.333 0.00 0.00 0.00 3.18
1538 2047 8.723942 ACATCTACATACATCCTCTTTTGTTC 57.276 34.615 0.00 0.00 0.00 3.18
1591 2100 9.357652 CCGAAAATACTTGTCATCAAAATGAAT 57.642 29.630 0.00 0.00 43.42 2.57
1592 2101 8.572185 TCCGAAAATACTTGTCATCAAAATGAA 58.428 29.630 0.00 0.00 43.42 2.57
1593 2102 8.020819 GTCCGAAAATACTTGTCATCAAAATGA 58.979 33.333 0.00 0.00 39.63 2.57
1594 2103 7.007367 CGTCCGAAAATACTTGTCATCAAAATG 59.993 37.037 0.00 0.00 32.87 2.32
1595 2104 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
1596 2105 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
1597 2106 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
1598 2107 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
1599 2108 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
1600 2109 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
1601 2110 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
1602 2111 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
1603 2112 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1604 2113 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1605 2114 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1606 2115 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1607 2116 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1608 2117 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1609 2118 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1610 2119 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
1611 2120 1.856629 ATACTCCCTCCGTCCGAAAA 58.143 50.000 0.00 0.00 0.00 2.29
1612 2121 1.856629 AATACTCCCTCCGTCCGAAA 58.143 50.000 0.00 0.00 0.00 3.46
1613 2122 2.092212 AGTAATACTCCCTCCGTCCGAA 60.092 50.000 0.00 0.00 0.00 4.30
1614 2123 1.492176 AGTAATACTCCCTCCGTCCGA 59.508 52.381 0.00 0.00 0.00 4.55
1615 2124 1.978454 AGTAATACTCCCTCCGTCCG 58.022 55.000 0.00 0.00 0.00 4.79
1616 2125 3.819902 CTGTAGTAATACTCCCTCCGTCC 59.180 52.174 0.00 0.00 0.00 4.79
1617 2126 4.275443 CACTGTAGTAATACTCCCTCCGTC 59.725 50.000 0.00 0.00 0.00 4.79
1618 2127 4.205587 CACTGTAGTAATACTCCCTCCGT 58.794 47.826 0.00 0.00 0.00 4.69
1619 2128 3.004524 GCACTGTAGTAATACTCCCTCCG 59.995 52.174 0.00 0.00 0.00 4.63
1620 2129 4.216708 AGCACTGTAGTAATACTCCCTCC 58.783 47.826 0.00 0.00 0.00 4.30
1621 2130 6.063404 ACTAGCACTGTAGTAATACTCCCTC 58.937 44.000 0.00 0.00 31.14 4.30
1622 2131 6.015991 ACTAGCACTGTAGTAATACTCCCT 57.984 41.667 0.00 0.00 31.14 4.20
1623 2132 6.505272 CAACTAGCACTGTAGTAATACTCCC 58.495 44.000 0.00 0.00 32.69 4.30
1624 2133 5.978322 GCAACTAGCACTGTAGTAATACTCC 59.022 44.000 0.00 0.00 44.79 3.85
1667 2176 1.332144 TAACTGAACCCCGATCCCCG 61.332 60.000 0.00 0.00 38.18 5.73
1693 2202 2.463441 CCAAGAGGTCCCCAGAACA 58.537 57.895 0.00 0.00 29.15 3.18
1737 2246 6.052405 ACAGAGGGAGTATATAGGAGTACG 57.948 45.833 0.00 0.00 0.00 3.67
1738 2247 6.885918 GGAACAGAGGGAGTATATAGGAGTAC 59.114 46.154 0.00 0.00 0.00 2.73
1739 2248 6.296317 CGGAACAGAGGGAGTATATAGGAGTA 60.296 46.154 0.00 0.00 0.00 2.59
1740 2249 5.515184 CGGAACAGAGGGAGTATATAGGAGT 60.515 48.000 0.00 0.00 0.00 3.85
1741 2250 4.944930 CGGAACAGAGGGAGTATATAGGAG 59.055 50.000 0.00 0.00 0.00 3.69
1742 2251 4.600547 TCGGAACAGAGGGAGTATATAGGA 59.399 45.833 0.00 0.00 0.00 2.94
1743 2252 4.919793 TCGGAACAGAGGGAGTATATAGG 58.080 47.826 0.00 0.00 0.00 2.57
1744 2253 7.469537 AATTCGGAACAGAGGGAGTATATAG 57.530 40.000 0.00 0.00 0.00 1.31
1745 2254 8.168725 AGTAATTCGGAACAGAGGGAGTATATA 58.831 37.037 0.00 0.00 0.00 0.86
1746 2255 7.011382 AGTAATTCGGAACAGAGGGAGTATAT 58.989 38.462 0.00 0.00 0.00 0.86
1747 2256 6.371278 AGTAATTCGGAACAGAGGGAGTATA 58.629 40.000 0.00 0.00 0.00 1.47
1748 2257 5.209659 AGTAATTCGGAACAGAGGGAGTAT 58.790 41.667 0.00 0.00 0.00 2.12
1749 2258 4.607239 AGTAATTCGGAACAGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
1750 2259 3.442076 AGTAATTCGGAACAGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
1751 2260 4.184629 CAAGTAATTCGGAACAGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
1752 2261 3.581332 ACAAGTAATTCGGAACAGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1753 2262 3.933332 GACAAGTAATTCGGAACAGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1754 2263 4.822026 AGACAAGTAATTCGGAACAGAGG 58.178 43.478 0.00 0.00 0.00 3.69
1755 2264 5.926542 TCAAGACAAGTAATTCGGAACAGAG 59.073 40.000 0.00 0.00 0.00 3.35
1756 2265 5.849510 TCAAGACAAGTAATTCGGAACAGA 58.150 37.500 0.00 0.00 0.00 3.41
1757 2266 6.539649 TTCAAGACAAGTAATTCGGAACAG 57.460 37.500 0.00 0.00 0.00 3.16
1758 2267 7.504924 AATTCAAGACAAGTAATTCGGAACA 57.495 32.000 0.00 0.00 0.00 3.18
1759 2268 7.860872 ACAAATTCAAGACAAGTAATTCGGAAC 59.139 33.333 0.00 0.00 0.00 3.62
1760 2269 7.936584 ACAAATTCAAGACAAGTAATTCGGAA 58.063 30.769 0.00 0.00 0.00 4.30
1761 2270 7.444183 AGACAAATTCAAGACAAGTAATTCGGA 59.556 33.333 0.00 0.00 0.00 4.55
1762 2271 7.584987 AGACAAATTCAAGACAAGTAATTCGG 58.415 34.615 0.00 0.00 0.00 4.30
1763 2272 9.746711 CTAGACAAATTCAAGACAAGTAATTCG 57.253 33.333 0.00 0.00 0.00 3.34
1768 2277 9.569167 CGTATCTAGACAAATTCAAGACAAGTA 57.431 33.333 0.00 0.00 0.00 2.24
1769 2278 7.545965 CCGTATCTAGACAAATTCAAGACAAGT 59.454 37.037 0.00 0.00 0.00 3.16
1770 2279 7.759886 TCCGTATCTAGACAAATTCAAGACAAG 59.240 37.037 0.00 0.00 0.00 3.16
1771 2280 7.608153 TCCGTATCTAGACAAATTCAAGACAA 58.392 34.615 0.00 0.00 0.00 3.18
1772 2281 7.165460 TCCGTATCTAGACAAATTCAAGACA 57.835 36.000 0.00 0.00 0.00 3.41
1773 2282 7.707035 ACATCCGTATCTAGACAAATTCAAGAC 59.293 37.037 0.00 0.00 0.00 3.01
1774 2283 7.782049 ACATCCGTATCTAGACAAATTCAAGA 58.218 34.615 0.00 0.00 0.00 3.02
1775 2284 9.698309 ATACATCCGTATCTAGACAAATTCAAG 57.302 33.333 0.00 0.00 32.66 3.02
1804 2313 9.833917 GGAGGTATCTAGCACTAAAATAAGTTT 57.166 33.333 0.00 0.00 0.00 2.66
1805 2314 8.142551 CGGAGGTATCTAGCACTAAAATAAGTT 58.857 37.037 0.00 0.00 0.00 2.66
1806 2315 7.287235 ACGGAGGTATCTAGCACTAAAATAAGT 59.713 37.037 0.00 0.00 0.00 2.24
1807 2316 7.659186 ACGGAGGTATCTAGCACTAAAATAAG 58.341 38.462 0.00 0.00 0.00 1.73
1808 2317 7.592885 ACGGAGGTATCTAGCACTAAAATAA 57.407 36.000 0.00 0.00 0.00 1.40
1809 2318 8.737175 CATACGGAGGTATCTAGCACTAAAATA 58.263 37.037 0.00 0.00 37.24 1.40
1810 2319 7.232941 ACATACGGAGGTATCTAGCACTAAAAT 59.767 37.037 0.00 0.00 37.24 1.82
1811 2320 6.548622 ACATACGGAGGTATCTAGCACTAAAA 59.451 38.462 0.00 0.00 37.24 1.52
1812 2321 6.066690 ACATACGGAGGTATCTAGCACTAAA 58.933 40.000 0.00 0.00 37.24 1.85
1813 2322 5.628130 ACATACGGAGGTATCTAGCACTAA 58.372 41.667 0.00 0.00 37.24 2.24
1814 2323 5.238624 ACATACGGAGGTATCTAGCACTA 57.761 43.478 0.00 0.00 37.24 2.74
1815 2324 4.101645 ACATACGGAGGTATCTAGCACT 57.898 45.455 0.00 0.00 37.24 4.40
1816 2325 5.122082 GTCTACATACGGAGGTATCTAGCAC 59.878 48.000 0.00 0.00 37.24 4.40
1817 2326 5.221783 TGTCTACATACGGAGGTATCTAGCA 60.222 44.000 0.00 0.00 37.24 3.49
1818 2327 5.243981 TGTCTACATACGGAGGTATCTAGC 58.756 45.833 0.00 0.00 37.24 3.42
1819 2328 7.741027 TTTGTCTACATACGGAGGTATCTAG 57.259 40.000 0.00 0.00 37.24 2.43
1820 2329 8.162085 AGATTTGTCTACATACGGAGGTATCTA 58.838 37.037 0.00 0.00 37.24 1.98
1821 2330 7.005296 AGATTTGTCTACATACGGAGGTATCT 58.995 38.462 0.00 0.00 37.24 1.98
1822 2331 7.216973 AGATTTGTCTACATACGGAGGTATC 57.783 40.000 0.00 0.00 37.24 2.24
1823 2332 8.701908 TTAGATTTGTCTACATACGGAGGTAT 57.298 34.615 0.00 0.00 39.96 2.73
1824 2333 7.994911 TCTTAGATTTGTCTACATACGGAGGTA 59.005 37.037 0.00 0.00 0.00 3.08
1825 2334 6.832384 TCTTAGATTTGTCTACATACGGAGGT 59.168 38.462 0.00 0.00 0.00 3.85
1826 2335 7.140048 GTCTTAGATTTGTCTACATACGGAGG 58.860 42.308 0.00 0.00 0.00 4.30
1827 2336 7.704271 TGTCTTAGATTTGTCTACATACGGAG 58.296 38.462 0.00 0.00 0.00 4.63
1828 2337 7.634671 TGTCTTAGATTTGTCTACATACGGA 57.365 36.000 0.00 0.00 0.00 4.69
1829 2338 7.974501 ACTTGTCTTAGATTTGTCTACATACGG 59.025 37.037 0.00 0.00 0.00 4.02
1830 2339 8.912787 ACTTGTCTTAGATTTGTCTACATACG 57.087 34.615 0.00 0.00 0.00 3.06
1836 2345 9.582431 CCGAATTACTTGTCTTAGATTTGTCTA 57.418 33.333 0.00 0.00 0.00 2.59
1837 2346 8.311836 TCCGAATTACTTGTCTTAGATTTGTCT 58.688 33.333 0.00 0.00 0.00 3.41
1838 2347 8.475331 TCCGAATTACTTGTCTTAGATTTGTC 57.525 34.615 0.00 0.00 0.00 3.18
1839 2348 8.718734 GTTCCGAATTACTTGTCTTAGATTTGT 58.281 33.333 0.00 0.00 0.00 2.83
1840 2349 7.898309 CGTTCCGAATTACTTGTCTTAGATTTG 59.102 37.037 0.00 0.00 0.00 2.32
1841 2350 7.064253 CCGTTCCGAATTACTTGTCTTAGATTT 59.936 37.037 0.00 0.00 0.00 2.17
1842 2351 6.534079 CCGTTCCGAATTACTTGTCTTAGATT 59.466 38.462 0.00 0.00 0.00 2.40
1843 2352 6.040878 CCGTTCCGAATTACTTGTCTTAGAT 58.959 40.000 0.00 0.00 0.00 1.98
1844 2353 5.183713 TCCGTTCCGAATTACTTGTCTTAGA 59.816 40.000 0.00 0.00 0.00 2.10
1845 2354 5.404946 TCCGTTCCGAATTACTTGTCTTAG 58.595 41.667 0.00 0.00 0.00 2.18
1846 2355 5.389859 TCCGTTCCGAATTACTTGTCTTA 57.610 39.130 0.00 0.00 0.00 2.10
1847 2356 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
1848 2357 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
1849 2358 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1850 2359 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
1851 2360 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
1852 2361 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
1853 2362 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
1854 2363 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
1855 2364 4.019174 ACTACTTCCTCCGTTCCGAATTA 58.981 43.478 0.00 0.00 0.00 1.40
1856 2365 2.830321 ACTACTTCCTCCGTTCCGAATT 59.170 45.455 0.00 0.00 0.00 2.17
1857 2366 2.454538 ACTACTTCCTCCGTTCCGAAT 58.545 47.619 0.00 0.00 0.00 3.34
1858 2367 1.915141 ACTACTTCCTCCGTTCCGAA 58.085 50.000 0.00 0.00 0.00 4.30
1859 2368 2.787473 TACTACTTCCTCCGTTCCGA 57.213 50.000 0.00 0.00 0.00 4.55
1860 2369 2.751806 ACTTACTACTTCCTCCGTTCCG 59.248 50.000 0.00 0.00 0.00 4.30
1861 2370 4.946772 AGTACTTACTACTTCCTCCGTTCC 59.053 45.833 0.00 0.00 30.80 3.62
1862 2371 5.065859 GGAGTACTTACTACTTCCTCCGTTC 59.934 48.000 0.00 0.00 35.66 3.95
1863 2372 4.946772 GGAGTACTTACTACTTCCTCCGTT 59.053 45.833 0.00 0.00 35.66 4.44
1864 2373 4.018960 TGGAGTACTTACTACTTCCTCCGT 60.019 45.833 0.00 0.00 39.87 4.69
1865 2374 4.521146 TGGAGTACTTACTACTTCCTCCG 58.479 47.826 0.00 0.00 39.87 4.63
1866 2375 5.892686 ACATGGAGTACTTACTACTTCCTCC 59.107 44.000 0.00 0.00 38.02 4.30
1867 2376 8.404765 GTTACATGGAGTACTTACTACTTCCTC 58.595 40.741 0.00 0.00 38.02 3.71
1868 2377 7.341512 GGTTACATGGAGTACTTACTACTTCCT 59.658 40.741 0.00 0.00 38.02 3.36
1869 2378 7.341512 AGGTTACATGGAGTACTTACTACTTCC 59.658 40.741 0.00 0.00 38.02 3.46
1870 2379 8.189460 CAGGTTACATGGAGTACTTACTACTTC 58.811 40.741 0.00 0.00 38.02 3.01
1871 2380 7.363617 GCAGGTTACATGGAGTACTTACTACTT 60.364 40.741 0.00 0.00 38.02 2.24
1872 2381 6.096564 GCAGGTTACATGGAGTACTTACTACT 59.903 42.308 0.00 0.00 38.02 2.57
1873 2382 6.271566 GCAGGTTACATGGAGTACTTACTAC 58.728 44.000 0.00 0.00 36.50 2.73
1874 2383 5.361857 GGCAGGTTACATGGAGTACTTACTA 59.638 44.000 0.00 0.00 36.50 1.82
1875 2384 4.161754 GGCAGGTTACATGGAGTACTTACT 59.838 45.833 0.00 0.00 39.71 2.24
1876 2385 4.161754 AGGCAGGTTACATGGAGTACTTAC 59.838 45.833 0.00 0.00 30.91 2.34
1906 2418 0.463474 GCCTGAGACATCTTGCTCCC 60.463 60.000 0.00 0.00 0.00 4.30
1907 2419 0.540923 AGCCTGAGACATCTTGCTCC 59.459 55.000 0.00 0.00 30.35 4.70
1909 2421 1.481772 GAGAGCCTGAGACATCTTGCT 59.518 52.381 2.34 2.34 36.23 3.91
1910 2422 1.206610 TGAGAGCCTGAGACATCTTGC 59.793 52.381 0.00 0.00 0.00 4.01
1911 2423 2.739287 GCTGAGAGCCTGAGACATCTTG 60.739 54.545 0.00 0.00 34.48 3.02
1912 2424 1.481772 GCTGAGAGCCTGAGACATCTT 59.518 52.381 0.00 0.00 34.48 2.40
1913 2425 1.113788 GCTGAGAGCCTGAGACATCT 58.886 55.000 0.00 0.00 34.48 2.90
1914 2426 0.822811 TGCTGAGAGCCTGAGACATC 59.177 55.000 0.00 0.00 41.51 3.06
1915 2427 1.207570 CTTGCTGAGAGCCTGAGACAT 59.792 52.381 0.00 0.00 41.51 3.06
1916 2428 0.607112 CTTGCTGAGAGCCTGAGACA 59.393 55.000 0.00 0.00 41.51 3.41
1917 2429 0.607620 ACTTGCTGAGAGCCTGAGAC 59.392 55.000 0.00 0.00 41.51 3.36
1918 2430 1.001746 CAACTTGCTGAGAGCCTGAGA 59.998 52.381 0.00 0.00 41.51 3.27
1919 2431 1.270732 ACAACTTGCTGAGAGCCTGAG 60.271 52.381 0.00 0.00 41.51 3.35
1920 2432 0.761187 ACAACTTGCTGAGAGCCTGA 59.239 50.000 0.00 0.00 41.51 3.86
1921 2433 1.266175 CAACAACTTGCTGAGAGCCTG 59.734 52.381 0.00 0.00 41.51 4.85
1922 2434 1.602311 CAACAACTTGCTGAGAGCCT 58.398 50.000 0.00 0.00 41.51 4.58
1962 2487 7.815840 TCATGGTTTCAACATTCAAGAAGTA 57.184 32.000 0.00 0.00 0.00 2.24
2001 2526 0.454957 CAAGTCCTTTGCCAATCGCG 60.455 55.000 0.00 0.00 42.08 5.87
2011 2538 3.244770 TGCTCCGAAATACCAAGTCCTTT 60.245 43.478 0.00 0.00 0.00 3.11
2062 2590 1.060713 AGCGATCAGAAAACGTGACG 58.939 50.000 2.24 2.24 0.00 4.35
2101 2629 4.758688 ACACAAGATGCTCATCGTTATGA 58.241 39.130 11.20 0.00 42.48 2.15
2243 2771 3.799366 TGTGGTTGTAGTGGTTGTAGTG 58.201 45.455 0.00 0.00 0.00 2.74
2245 2773 4.448210 AGTTGTGGTTGTAGTGGTTGTAG 58.552 43.478 0.00 0.00 0.00 2.74
2246 2774 4.490899 AGTTGTGGTTGTAGTGGTTGTA 57.509 40.909 0.00 0.00 0.00 2.41
2247 2775 3.359695 AGTTGTGGTTGTAGTGGTTGT 57.640 42.857 0.00 0.00 0.00 3.32
2248 2776 3.813166 CCTAGTTGTGGTTGTAGTGGTTG 59.187 47.826 0.00 0.00 0.00 3.77
2249 2777 3.457012 ACCTAGTTGTGGTTGTAGTGGTT 59.543 43.478 0.00 0.00 33.34 3.67
2250 2778 3.043418 ACCTAGTTGTGGTTGTAGTGGT 58.957 45.455 0.00 0.00 33.34 4.16
2251 2779 3.181458 ACACCTAGTTGTGGTTGTAGTGG 60.181 47.826 0.00 0.00 40.62 4.00
2322 2850 3.623510 GCAGTACATGAAAACCTCTAGGC 59.376 47.826 0.00 0.00 39.32 3.93
2335 2863 3.507233 ACAAAATGGTGAGGCAGTACATG 59.493 43.478 0.00 0.00 0.00 3.21
2336 2864 3.766545 ACAAAATGGTGAGGCAGTACAT 58.233 40.909 0.00 0.00 0.00 2.29
2340 2868 4.588528 ACAATAACAAAATGGTGAGGCAGT 59.411 37.500 0.00 0.00 0.00 4.40
2345 2873 6.564499 GCTGCAAACAATAACAAAATGGTGAG 60.564 38.462 0.00 0.00 0.00 3.51
2542 3088 1.290955 CGACCCGCTGAGGTAAACA 59.709 57.895 0.00 0.00 41.42 2.83
2545 3091 3.766691 GCCGACCCGCTGAGGTAA 61.767 66.667 0.00 0.00 41.42 2.85
2557 3103 3.119101 TGAGATACTCAAGAAAGGCCGAC 60.119 47.826 0.00 0.00 37.57 4.79
2560 3106 4.479786 AGTGAGATACTCAAGAAAGGCC 57.520 45.455 0.00 0.00 42.46 5.19
2604 3159 5.072872 ACGGAGGCTATACTCTAAGGAAGTA 59.927 44.000 0.00 0.00 37.63 2.24
2612 3167 4.174704 TGGAAACGGAGGCTATACTCTA 57.825 45.455 0.00 0.00 37.63 2.43
2624 3179 1.004161 TGCCATGAGAATGGAAACGGA 59.996 47.619 8.93 0.00 44.39 4.69
2639 3194 4.336433 GCACTAGTACATGTGATTTGCCAT 59.664 41.667 18.35 0.00 36.38 4.40
2817 3373 1.424403 TGGTGACGTACTTGCGATTG 58.576 50.000 0.00 0.00 35.59 2.67
2824 3380 4.520179 AGGTTTTCTTTGGTGACGTACTT 58.480 39.130 0.00 0.00 0.00 2.24
2998 3554 5.695851 ACGAAGCAAAAGAAATCTGTCAT 57.304 34.783 0.00 0.00 0.00 3.06
3004 3560 5.656537 CGGAAAAACGAAGCAAAAGAAATC 58.343 37.500 0.00 0.00 35.47 2.17
3101 3657 7.507616 ACAAACCTACCTCCAATGTTATTTGAA 59.492 33.333 0.00 0.00 0.00 2.69
3236 3792 7.631717 AGGAAGCTTATTATCACCAGAAAAC 57.368 36.000 0.00 0.00 0.00 2.43
3273 3829 9.722056 GGAACTACTTAATAATGATTGCAACTG 57.278 33.333 0.00 0.00 0.00 3.16
3284 3840 7.184022 AGTGGGAAGTGGGAACTACTTAATAAT 59.816 37.037 0.00 0.00 38.42 1.28
3285 3841 6.502863 AGTGGGAAGTGGGAACTACTTAATAA 59.497 38.462 0.00 0.00 38.42 1.40
3286 3842 6.027482 AGTGGGAAGTGGGAACTACTTAATA 58.973 40.000 0.00 0.00 38.42 0.98
3358 3914 7.396540 AATACCAGTAGCCAGAAAGAAAATG 57.603 36.000 0.00 0.00 0.00 2.32
3556 4112 5.324409 TGTGGATTACCTTCATCTGCTTTT 58.676 37.500 0.00 0.00 37.04 2.27
3568 4124 3.139397 TGACACCCTTTTGTGGATTACCT 59.861 43.478 0.00 0.00 40.62 3.08
3702 4442 5.914635 ACAAAATAAGAATGCAACAGTGACG 59.085 36.000 0.00 0.00 0.00 4.35
3766 4507 3.828451 ACAACTTCCAGATTGGGTGAATG 59.172 43.478 0.00 0.00 38.32 2.67
3770 4511 2.862541 TCACAACTTCCAGATTGGGTG 58.137 47.619 0.00 0.00 38.32 4.61
3870 4653 1.271379 TGCCTTGCAAGAAATCTGCTG 59.729 47.619 28.05 8.52 34.76 4.41
4139 4922 4.374399 AGAAGGCACAAAATTCTGCAAAG 58.626 39.130 0.00 0.00 34.90 2.77
4215 4998 6.762702 AGACTAGCTTTACCTCTACAGAAC 57.237 41.667 0.00 0.00 0.00 3.01
4245 5028 5.407387 TGCATAAAACTAAGACCAACGACTC 59.593 40.000 0.00 0.00 0.00 3.36
4249 5032 8.958175 TTTATTGCATAAAACTAAGACCAACG 57.042 30.769 0.00 0.00 32.18 4.10
4268 5051 6.864685 GCATGACATGGATGTGGTATTTATTG 59.135 38.462 17.03 0.00 41.95 1.90
4348 5131 1.068194 ACGAAGCTGAGAGACCGAAAG 60.068 52.381 0.00 0.00 0.00 2.62
4366 5149 3.354089 AATTTGCTGAACCTGTCAACG 57.646 42.857 0.00 0.00 35.22 4.10
4373 5156 3.960102 TGGACAGAAAATTTGCTGAACCT 59.040 39.130 29.41 9.73 36.07 3.50
4397 5180 3.484407 AGACAAGCAGAGCTTCACAAAT 58.516 40.909 0.50 0.00 46.77 2.32
4423 5293 5.008712 AGTGGTTCCGACTCAATTTTCTTTC 59.991 40.000 0.00 0.00 0.00 2.62
4446 5316 2.350057 TGGTATCTCGACTCTGGGAG 57.650 55.000 0.00 0.00 35.52 4.30
4610 5480 9.899661 ACCATATTTTCAGTACTGCAAAGTATA 57.100 29.630 22.10 12.58 30.04 1.47
4729 5690 6.896613 CGTGATTCTGTGAATATGTTTCTTCG 59.103 38.462 0.00 0.00 0.00 3.79
4754 5715 7.294473 GTTTCTTGACAGTGATAGAAAGAAGC 58.706 38.462 14.70 11.15 37.31 3.86
4811 5772 7.490840 CATCATAACTTGAAATGCCCATTACA 58.509 34.615 0.00 0.00 38.03 2.41
4961 5925 6.546403 TGTATTACTCCTAACAGCAGGACTAG 59.454 42.308 0.00 0.00 39.89 2.57
5074 6038 8.502387 GGATTTGATGCAGTCTCTTTATACATC 58.498 37.037 0.00 0.00 34.45 3.06
5163 6144 4.201851 ACAGTTCACATATCATCGCAAAGC 60.202 41.667 0.00 0.00 0.00 3.51
5270 6251 7.201920 GGCCTAGAATACATCAAGTAAGACAGA 60.202 40.741 0.00 0.00 36.05 3.41
5385 6366 5.589855 ACAGATCAAAAGAATCACACACACA 59.410 36.000 0.00 0.00 0.00 3.72
5386 6367 6.064846 ACAGATCAAAAGAATCACACACAC 57.935 37.500 0.00 0.00 0.00 3.82
5387 6368 6.992123 AGTACAGATCAAAAGAATCACACACA 59.008 34.615 0.00 0.00 0.00 3.72
5388 6369 7.293745 CAGTACAGATCAAAAGAATCACACAC 58.706 38.462 0.00 0.00 0.00 3.82
5425 6406 8.946085 TGTGTATCATTAATTCTGGTTTGTCTC 58.054 33.333 0.00 0.00 0.00 3.36
5450 6431 6.881065 TCCTCACCTTGAAATGATCTAAACTG 59.119 38.462 0.00 0.00 0.00 3.16
5594 6575 4.559862 TCCCCTTTCAGAGAACAAGATC 57.440 45.455 0.00 0.00 0.00 2.75
5722 6710 4.281941 GCTATCATCCTATCACAGTGACCA 59.718 45.833 5.05 0.00 0.00 4.02
5757 6745 6.745116 TCTGGACAGATAACATACCATAACG 58.255 40.000 0.00 0.00 31.41 3.18
5758 6746 6.647067 GCTCTGGACAGATAACATACCATAAC 59.353 42.308 2.00 0.00 36.76 1.89
5796 6784 6.051717 TCTGACTTCTTGAGTTTCTTCTTGG 58.948 40.000 0.00 0.00 39.19 3.61
5808 6796 5.260424 AGTATCTCTGCTCTGACTTCTTGA 58.740 41.667 0.00 0.00 0.00 3.02
5837 6825 3.649023 AGTGGTTTACAGTGGTGTATGGA 59.351 43.478 0.00 0.00 38.98 3.41
5904 6892 2.624838 CCCCAATCCACATATGCTTGTC 59.375 50.000 1.58 0.00 0.00 3.18
5990 7031 4.844349 ACTCCACCACTAATATGCAAGT 57.156 40.909 0.00 0.00 0.00 3.16
5995 7036 8.588472 TCATTCAGATACTCCACCACTAATATG 58.412 37.037 0.00 0.00 0.00 1.78
6026 7067 3.895656 TCACCGGGTCTTATCTCCATTAG 59.104 47.826 6.32 0.00 0.00 1.73
6044 7087 7.908453 ACCTACTAGGCTTAATTATGATCACC 58.092 38.462 0.00 0.00 39.63 4.02
6062 7105 4.018141 TGCAGGTAGTGTAAGGACCTACTA 60.018 45.833 0.00 0.00 41.80 1.82
6087 7130 5.619625 AAATGGAAGAGAAAAAGAGAGCG 57.380 39.130 0.00 0.00 0.00 5.03
6196 7239 8.253113 GTCATAATCACTTGGAATTGAACCAAT 58.747 33.333 0.00 0.00 44.74 3.16
6207 7250 9.725019 GTCATATTATGGTCATAATCACTTGGA 57.275 33.333 16.63 6.95 41.60 3.53
6217 7260 8.924303 GGCCAGTATAGTCATATTATGGTCATA 58.076 37.037 0.00 0.00 33.62 2.15
6218 7261 7.625280 AGGCCAGTATAGTCATATTATGGTCAT 59.375 37.037 5.01 0.00 34.86 3.06
6219 7262 6.959954 AGGCCAGTATAGTCATATTATGGTCA 59.040 38.462 5.01 0.00 34.86 4.02
6220 7263 7.425224 AGGCCAGTATAGTCATATTATGGTC 57.575 40.000 5.01 0.00 33.61 4.02
6221 7264 7.092846 GGAAGGCCAGTATAGTCATATTATGGT 60.093 40.741 5.01 0.00 32.33 3.55
6222 7265 7.126421 AGGAAGGCCAGTATAGTCATATTATGG 59.874 40.741 5.01 0.00 36.29 2.74
6223 7266 8.083828 AGGAAGGCCAGTATAGTCATATTATG 57.916 38.462 5.01 0.00 36.29 1.90
6224 7267 8.125733 AGAGGAAGGCCAGTATAGTCATATTAT 58.874 37.037 5.01 0.00 36.29 1.28
6225 7268 7.479579 AGAGGAAGGCCAGTATAGTCATATTA 58.520 38.462 5.01 0.00 36.29 0.98
6226 7269 6.326970 AGAGGAAGGCCAGTATAGTCATATT 58.673 40.000 5.01 0.00 36.29 1.28
6227 7270 5.909760 AGAGGAAGGCCAGTATAGTCATAT 58.090 41.667 5.01 0.00 36.29 1.78
6265 7319 6.497640 AGAAAGAATCCTAAATTCAAGGGCT 58.502 36.000 6.90 1.35 34.66 5.19
6304 7358 5.859205 AGCAGGAAGAACAATTTGAAGTT 57.141 34.783 2.79 0.00 0.00 2.66
6305 7359 8.635765 TTATAGCAGGAAGAACAATTTGAAGT 57.364 30.769 2.79 0.00 0.00 3.01
6336 7390 2.682856 TCCCAATTACAGAATTCGCTGC 59.317 45.455 0.00 0.00 39.51 5.25
6341 7395 9.710900 AAATTTCAGTTCCCAATTACAGAATTC 57.289 29.630 0.00 0.00 32.73 2.17
6346 7400 6.991938 TCCAAATTTCAGTTCCCAATTACAG 58.008 36.000 0.00 0.00 0.00 2.74
6398 7452 5.368230 TGATCTGGGTATTACTTGCATGGTA 59.632 40.000 4.44 0.47 0.00 3.25
6493 7547 2.623535 TCACAACTGTTGTTACACGCT 58.376 42.857 22.66 0.00 43.23 5.07
6577 7631 3.816994 ACAAGTTCCTTTACACAGGACC 58.183 45.455 0.00 0.00 43.12 4.46
6585 7639 8.178313 GCATCAGAATTCTACAAGTTCCTTTAC 58.822 37.037 7.86 0.00 0.00 2.01
6685 7868 7.024340 TCCTCTACTCATAATAACGTCACAC 57.976 40.000 0.00 0.00 0.00 3.82
6699 7882 8.116669 CCCTATGATAATAGGTTCCTCTACTCA 58.883 40.741 14.27 0.00 41.61 3.41
6702 7885 8.896722 TTCCCTATGATAATAGGTTCCTCTAC 57.103 38.462 14.27 0.00 41.61 2.59
6740 7923 1.272592 TGATGGAATGGCAAGGAAGCA 60.273 47.619 0.00 0.00 35.83 3.91
6741 7924 1.407979 CTGATGGAATGGCAAGGAAGC 59.592 52.381 0.00 0.00 0.00 3.86
6756 7942 1.171308 CACCACTTTCTGGCCTGATG 58.829 55.000 13.72 11.65 45.32 3.07
6757 7943 0.610232 GCACCACTTTCTGGCCTGAT 60.610 55.000 13.72 0.00 45.32 2.90
6759 7945 1.521450 CTGCACCACTTTCTGGCCTG 61.521 60.000 3.32 2.92 45.32 4.85
6762 7948 0.606401 TAGCTGCACCACTTTCTGGC 60.606 55.000 1.02 0.00 45.32 4.85
6773 7959 5.164022 GCTCATGAAAACAAAATAGCTGCAC 60.164 40.000 1.02 0.00 0.00 4.57
6778 7964 3.859386 CCGGCTCATGAAAACAAAATAGC 59.141 43.478 0.00 0.00 0.00 2.97
6802 7988 4.949856 GCCAGTAAAATGATTCCCTCTTGA 59.050 41.667 0.00 0.00 0.00 3.02
6820 8006 1.598130 GCTCTGAAACACGGCCAGT 60.598 57.895 2.24 0.00 0.00 4.00
6826 8012 2.157421 GCTCCAGCTCTGAAACACG 58.843 57.895 0.00 0.00 38.21 4.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.