Multiple sequence alignment - TraesCS4A01G113300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G113300 chr4A 100.000 5816 0 0 1 5816 137532664 137538479 0.000000e+00 10741.0
1 TraesCS4A01G113300 chr4A 93.563 870 46 4 3438 4297 683771548 683770679 0.000000e+00 1288.0
2 TraesCS4A01G113300 chr4A 97.794 272 5 1 1899 2169 233990931 233991202 8.820000e-128 468.0
3 TraesCS4A01G113300 chr4A 98.479 263 4 0 1907 2169 140976711 140976973 1.140000e-126 464.0
4 TraesCS4A01G113300 chr4A 97.744 266 6 0 1904 2169 589491201 589490936 5.310000e-125 459.0
5 TraesCS4A01G113300 chr4A 85.294 238 24 9 2799 3030 240374526 240374758 9.740000e-58 235.0
6 TraesCS4A01G113300 chr4B 90.942 1932 110 29 3 1910 413493045 413491155 0.000000e+00 2538.0
7 TraesCS4A01G113300 chr4B 95.007 721 31 3 4335 5053 413489864 413489147 0.000000e+00 1127.0
8 TraesCS4A01G113300 chr4B 96.960 625 18 1 2167 2791 413491157 413490534 0.000000e+00 1048.0
9 TraesCS4A01G113300 chr4B 92.117 647 28 13 2791 3433 413490503 413489876 0.000000e+00 891.0
10 TraesCS4A01G113300 chr4B 89.330 403 23 14 5385 5771 413472482 413472084 6.770000e-134 488.0
11 TraesCS4A01G113300 chr4B 90.614 277 26 0 1908 2184 4166095 4166371 9.210000e-98 368.0
12 TraesCS4A01G113300 chr4B 91.444 187 13 2 5201 5386 413488984 413488800 2.690000e-63 254.0
13 TraesCS4A01G113300 chr4B 83.898 236 28 10 2799 3030 258784953 258785182 3.530000e-52 217.0
14 TraesCS4A01G113300 chr4B 100.000 52 0 0 5052 5103 413489083 413489032 4.800000e-16 97.1
15 TraesCS4A01G113300 chr4D 91.189 1203 51 22 734 1910 335341529 335340356 0.000000e+00 1583.0
16 TraesCS4A01G113300 chr4D 89.974 768 47 6 3 741 335342253 335341487 0.000000e+00 965.0
17 TraesCS4A01G113300 chr4D 92.722 632 29 6 2167 2791 335340358 335339737 0.000000e+00 896.0
18 TraesCS4A01G113300 chr4D 93.096 449 19 7 4596 5044 335338675 335338239 0.000000e+00 647.0
19 TraesCS4A01G113300 chr4D 88.497 539 29 17 5308 5816 335338241 335337706 6.400000e-174 621.0
20 TraesCS4A01G113300 chr4D 88.430 363 33 3 2790 3150 335339708 335339353 4.160000e-116 429.0
21 TraesCS4A01G113300 chr4D 91.554 296 24 1 4298 4593 335338999 335338705 1.950000e-109 407.0
22 TraesCS4A01G113300 chr4D 85.390 308 29 9 3134 3433 335339298 335338999 7.320000e-79 305.0
23 TraesCS4A01G113300 chr4D 88.235 204 18 6 2799 2999 206051020 206050820 7.530000e-59 239.0
24 TraesCS4A01G113300 chr2D 95.156 867 40 2 3433 4297 299899315 299898449 0.000000e+00 1367.0
25 TraesCS4A01G113300 chr2D 91.820 489 38 2 1003 1490 37533505 37533992 0.000000e+00 680.0
26 TraesCS4A01G113300 chr2D 79.598 348 57 7 2232 2576 37536177 37536513 2.710000e-58 237.0
27 TraesCS4A01G113300 chr2D 73.260 273 54 18 1905 2168 84746493 84746755 1.340000e-11 82.4
28 TraesCS4A01G113300 chr1D 93.678 870 47 6 3434 4297 422325740 422324873 0.000000e+00 1295.0
29 TraesCS4A01G113300 chr1D 90.654 535 31 3 3427 3960 374637560 374638076 0.000000e+00 693.0
30 TraesCS4A01G113300 chr1D 94.585 277 13 2 3960 4235 374638420 374638695 1.500000e-115 427.0
31 TraesCS4A01G113300 chr3A 92.930 877 49 9 3431 4297 395743637 395744510 0.000000e+00 1264.0
32 TraesCS4A01G113300 chr3A 88.060 67 5 3 5275 5339 82345028 82344963 6.250000e-10 76.8
33 TraesCS4A01G113300 chr3A 90.196 51 4 1 5300 5350 82237842 82237793 1.350000e-06 65.8
34 TraesCS4A01G113300 chr5D 91.771 875 52 11 3430 4297 475521694 475520833 0.000000e+00 1199.0
35 TraesCS4A01G113300 chr5D 93.169 366 24 1 3634 3998 420900876 420900511 2.390000e-148 536.0
36 TraesCS4A01G113300 chr5D 92.308 299 17 4 3995 4289 420885069 420884773 2.510000e-113 420.0
37 TraesCS4A01G113300 chr5D 92.925 212 13 1 3431 3642 420901276 420901067 2.040000e-79 307.0
38 TraesCS4A01G113300 chr5B 94.981 518 23 3 3782 4297 534857723 534858239 0.000000e+00 809.0
39 TraesCS4A01G113300 chr5B 95.543 359 13 3 3431 3788 534838645 534839001 6.540000e-159 571.0
40 TraesCS4A01G113300 chr5B 89.247 279 28 2 1908 2186 227644197 227643921 1.200000e-91 348.0
41 TraesCS4A01G113300 chr2B 92.229 489 36 2 1003 1490 65313860 65314347 0.000000e+00 691.0
42 TraesCS4A01G113300 chr2B 92.884 267 13 3 3607 3872 305833769 305833508 3.290000e-102 383.0
43 TraesCS4A01G113300 chr2B 90.614 277 22 4 1908 2182 496074046 496074320 1.190000e-96 364.0
44 TraesCS4A01G113300 chr2B 79.781 366 59 10 2223 2585 65316014 65316367 9.670000e-63 252.0
45 TraesCS4A01G113300 chr2B 82.143 84 15 0 2086 2169 525221649 525221732 8.080000e-09 73.1
46 TraesCS4A01G113300 chr3B 90.112 536 35 6 3750 4282 28259108 28259628 0.000000e+00 680.0
47 TraesCS4A01G113300 chr1B 93.412 425 21 4 3454 3877 377071191 377071609 1.780000e-174 623.0
48 TraesCS4A01G113300 chr2A 91.457 398 32 2 1094 1490 42398352 42398748 3.960000e-151 545.0
49 TraesCS4A01G113300 chr2A 98.855 262 3 0 1908 2169 109653991 109654252 8.820000e-128 468.0
50 TraesCS4A01G113300 chr2A 79.050 358 61 7 2232 2586 42400979 42401325 3.500000e-57 233.0
51 TraesCS4A01G113300 chr6D 82.459 610 57 17 13 609 63767900 63768472 6.770000e-134 488.0
52 TraesCS4A01G113300 chr6D 96.491 57 2 0 5299 5355 471323683 471323739 1.730000e-15 95.3
53 TraesCS4A01G113300 chr6A 82.266 609 53 20 13 609 81120760 81121325 5.270000e-130 475.0
54 TraesCS4A01G113300 chr1A 98.855 262 3 0 1908 2169 354686250 354686511 8.820000e-128 468.0
55 TraesCS4A01G113300 chr1A 98.467 261 4 0 1908 2168 366897188 366897448 1.480000e-125 460.0
56 TraesCS4A01G113300 chr1A 97.761 268 5 1 1902 2168 441956069 441955802 1.480000e-125 460.0
57 TraesCS4A01G113300 chr1A 76.285 253 43 15 2800 3042 56612668 56612913 1.020000e-22 119.0
58 TraesCS4A01G113300 chr7B 97.744 266 6 0 1903 2168 612606312 612606577 5.310000e-125 459.0
59 TraesCS4A01G113300 chr7B 84.866 337 42 8 3961 4297 651186706 651186379 1.210000e-86 331.0
60 TraesCS4A01G113300 chr7A 97.398 269 5 2 1901 2169 688618348 688618082 1.910000e-124 457.0
61 TraesCS4A01G113300 chr7A 90.370 270 25 1 1906 2175 193563495 193563763 2.580000e-93 353.0
62 TraesCS4A01G113300 chr7A 82.301 113 15 4 2075 2184 292994047 292994157 6.210000e-15 93.5
63 TraesCS4A01G113300 chr6B 85.901 383 24 12 13 380 137458696 137459063 1.180000e-101 381.0
64 TraesCS4A01G113300 chr6B 82.773 238 32 9 2794 3025 536797346 536797580 2.750000e-48 204.0
65 TraesCS4A01G113300 chr6B 81.028 253 44 3 2793 3042 628514108 628513857 1.280000e-46 198.0
66 TraesCS4A01G113300 chr7D 79.710 207 34 7 2825 3027 206607790 206607588 6.080000e-30 143.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G113300 chr4A 137532664 137538479 5815 False 10741.000000 10741 100.000000 1 5816 1 chr4A.!!$F1 5815
1 TraesCS4A01G113300 chr4A 683770679 683771548 869 True 1288.000000 1288 93.563000 3438 4297 1 chr4A.!!$R2 859
2 TraesCS4A01G113300 chr4B 413488800 413493045 4245 True 992.516667 2538 94.411667 3 5386 6 chr4B.!!$R2 5383
3 TraesCS4A01G113300 chr4D 335337706 335342253 4547 True 731.625000 1583 90.106500 3 5816 8 chr4D.!!$R2 5813
4 TraesCS4A01G113300 chr2D 299898449 299899315 866 True 1367.000000 1367 95.156000 3433 4297 1 chr2D.!!$R1 864
5 TraesCS4A01G113300 chr2D 37533505 37536513 3008 False 458.500000 680 85.709000 1003 2576 2 chr2D.!!$F2 1573
6 TraesCS4A01G113300 chr1D 422324873 422325740 867 True 1295.000000 1295 93.678000 3434 4297 1 chr1D.!!$R1 863
7 TraesCS4A01G113300 chr1D 374637560 374638695 1135 False 560.000000 693 92.619500 3427 4235 2 chr1D.!!$F1 808
8 TraesCS4A01G113300 chr3A 395743637 395744510 873 False 1264.000000 1264 92.930000 3431 4297 1 chr3A.!!$F1 866
9 TraesCS4A01G113300 chr5D 475520833 475521694 861 True 1199.000000 1199 91.771000 3430 4297 1 chr5D.!!$R2 867
10 TraesCS4A01G113300 chr5D 420900511 420901276 765 True 421.500000 536 93.047000 3431 3998 2 chr5D.!!$R3 567
11 TraesCS4A01G113300 chr5B 534857723 534858239 516 False 809.000000 809 94.981000 3782 4297 1 chr5B.!!$F2 515
12 TraesCS4A01G113300 chr2B 65313860 65316367 2507 False 471.500000 691 86.005000 1003 2585 2 chr2B.!!$F3 1582
13 TraesCS4A01G113300 chr3B 28259108 28259628 520 False 680.000000 680 90.112000 3750 4282 1 chr3B.!!$F1 532
14 TraesCS4A01G113300 chr2A 42398352 42401325 2973 False 389.000000 545 85.253500 1094 2586 2 chr2A.!!$F2 1492
15 TraesCS4A01G113300 chr6D 63767900 63768472 572 False 488.000000 488 82.459000 13 609 1 chr6D.!!$F1 596
16 TraesCS4A01G113300 chr6A 81120760 81121325 565 False 475.000000 475 82.266000 13 609 1 chr6A.!!$F1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
765 809 0.370273 CGCAGGCGTATTGTCAAGAC 59.630 55.0 5.34 0.0 34.35 3.01 F
1934 3648 0.320946 CCGGTCCTTTTTACTCCGCA 60.321 55.0 0.00 0.0 39.87 5.69 F
2727 4978 0.523072 ACTGCGCCTTTAGCACATTG 59.477 50.0 4.18 0.0 44.04 2.82 F
3221 5580 0.331616 GGGGTTGGTTGGCTAGTCAT 59.668 55.0 0.00 0.0 0.00 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2150 3864 0.616964 GGTACTCCCTCCGGTCCTTT 60.617 60.0 0.00 0.00 0.00 3.11 R
3200 5556 0.111639 GACTAGCCAACCAACCCCAA 59.888 55.0 0.00 0.00 0.00 4.12 R
3670 6251 0.391597 TGGCCCGTATGTTAGCTAGC 59.608 55.0 6.62 6.62 0.00 3.42 R
5193 8279 0.179171 CATCAGAAGCAAAGCGGCTG 60.179 55.0 1.81 0.00 45.07 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 6.092807 CAGGTGAAGAACTAACCATCTAAAGC 59.907 42.308 8.58 0.00 36.37 3.51
58 59 3.306225 GCATGAACAACCACATCCATGTT 60.306 43.478 0.00 0.00 39.39 2.71
134 135 4.201822 GGAGACATGTTAACTCGGCATTTC 60.202 45.833 7.22 0.00 0.00 2.17
166 170 1.635844 TTACAGAGTTGTATGCGCCG 58.364 50.000 4.18 0.00 39.43 6.46
171 175 2.098298 GTTGTATGCGCCGCAGTG 59.902 61.111 19.64 0.00 43.65 3.66
184 188 0.810648 CGCAGTGGCACAAATATGGT 59.189 50.000 21.41 0.00 44.16 3.55
192 196 4.021544 GTGGCACAAATATGGTTTTCTCCA 60.022 41.667 13.86 0.00 44.16 3.86
227 254 7.934855 AACTGAATAGCATCAAGAGATTTGT 57.065 32.000 0.00 0.00 30.20 2.83
231 258 8.114331 TGAATAGCATCAAGAGATTTGTGTTT 57.886 30.769 0.00 0.00 30.20 2.83
247 279 3.055021 TGTGTTTGAGGTGGTGAGTAACA 60.055 43.478 0.00 0.00 0.00 2.41
411 452 4.207281 CGATGGCTCCGGCGAAGA 62.207 66.667 9.30 0.00 39.81 2.87
478 519 3.785859 CTAGCTGCGGGCCTTGGA 61.786 66.667 0.84 0.00 43.05 3.53
481 522 4.056125 GCTGCGGGCCTTGGAAAC 62.056 66.667 0.84 0.00 34.27 2.78
500 541 2.242043 ACCACTGGAAAGGCAATGAAG 58.758 47.619 0.71 0.00 0.00 3.02
593 637 1.372501 TCCTCCCCTCCAAGAAAAGG 58.627 55.000 0.00 0.00 0.00 3.11
649 693 4.680237 TGGTGCGTGCCTCTTCCG 62.680 66.667 0.00 0.00 0.00 4.30
696 740 2.186384 GCGCACCATCTCTGCTCT 59.814 61.111 0.30 0.00 32.03 4.09
715 759 3.475774 CGCTACCCGAACACGCAC 61.476 66.667 0.00 0.00 40.02 5.34
716 760 2.356553 GCTACCCGAACACGCACA 60.357 61.111 0.00 0.00 0.00 4.57
738 782 5.570589 ACACGTATTTTCAAGAGTACGCTAC 59.429 40.000 0.00 0.00 42.51 3.58
741 785 4.820894 ATTTTCAAGAGTACGCTACCCT 57.179 40.909 0.00 0.00 0.00 4.34
744 788 2.928334 TCAAGAGTACGCTACCCTAGG 58.072 52.381 0.06 0.06 0.00 3.02
765 809 0.370273 CGCAGGCGTATTGTCAAGAC 59.630 55.000 5.34 0.00 34.35 3.01
783 827 1.318158 ACTACGCTACCCGGTTCCAG 61.318 60.000 0.00 0.00 42.52 3.86
831 901 2.660572 CGGGAGAGATATCGGATCCAT 58.339 52.381 13.41 7.21 0.00 3.41
832 902 2.621055 CGGGAGAGATATCGGATCCATC 59.379 54.545 13.41 7.50 0.00 3.51
833 903 2.621055 GGGAGAGATATCGGATCCATCG 59.379 54.545 13.41 0.00 0.00 3.84
834 904 2.621055 GGAGAGATATCGGATCCATCGG 59.379 54.545 13.41 0.00 0.00 4.18
835 905 3.546724 GAGAGATATCGGATCCATCGGA 58.453 50.000 13.41 0.43 39.87 4.55
836 906 3.948473 GAGAGATATCGGATCCATCGGAA 59.052 47.826 13.41 0.00 39.18 4.30
871 941 3.071602 ACTTGATATCCGATCCACCAAGG 59.928 47.826 0.00 0.00 35.25 3.61
1125 1203 2.316792 CTCCTCGAGTACAACAACGTG 58.683 52.381 12.31 0.00 0.00 4.49
1541 1619 8.264347 GGTTACCCACCAATTATCATGATTTTT 58.736 33.333 14.65 5.30 46.42 1.94
1542 1620 9.313118 GTTACCCACCAATTATCATGATTTTTC 57.687 33.333 14.65 0.00 0.00 2.29
1547 1671 9.101655 CCACCAATTATCATGATTTTTCCTTTC 57.898 33.333 14.65 0.00 0.00 2.62
1574 1701 5.657470 TTCTGATTTATGCACTACGATGC 57.343 39.130 0.00 0.00 46.32 3.91
1576 1703 3.138304 TGATTTATGCACTACGATGCCC 58.862 45.455 8.24 0.00 45.50 5.36
1581 1708 1.878522 GCACTACGATGCCCTGACG 60.879 63.158 0.00 0.00 39.86 4.35
1612 1756 3.799963 TGCATTCACTAATAACTACGCCG 59.200 43.478 0.00 0.00 0.00 6.46
1648 2093 2.615912 TGTCATGTGAATTTGTGCGTGA 59.384 40.909 0.00 0.00 0.00 4.35
1649 2094 3.252944 TGTCATGTGAATTTGTGCGTGAT 59.747 39.130 0.00 0.00 30.86 3.06
1650 2095 3.605056 GTCATGTGAATTTGTGCGTGATG 59.395 43.478 0.00 0.00 30.86 3.07
1651 2096 3.252944 TCATGTGAATTTGTGCGTGATGT 59.747 39.130 0.00 0.00 0.00 3.06
1653 2098 2.615912 TGTGAATTTGTGCGTGATGTCA 59.384 40.909 0.00 0.00 0.00 3.58
1656 2101 1.896220 ATTTGTGCGTGATGTCAGGT 58.104 45.000 4.83 0.00 34.50 4.00
1658 2103 2.535012 TTGTGCGTGATGTCAGGTAA 57.465 45.000 4.83 0.00 34.50 2.85
1659 2104 2.535012 TGTGCGTGATGTCAGGTAAA 57.465 45.000 4.83 0.00 34.50 2.01
1661 2106 3.407698 TGTGCGTGATGTCAGGTAAAAT 58.592 40.909 4.83 0.00 34.50 1.82
1663 2108 3.188460 GTGCGTGATGTCAGGTAAAATGT 59.812 43.478 4.83 0.00 34.50 2.71
1664 2109 3.188254 TGCGTGATGTCAGGTAAAATGTG 59.812 43.478 4.83 0.00 34.50 3.21
1665 2110 3.747193 CGTGATGTCAGGTAAAATGTGC 58.253 45.455 0.00 0.00 0.00 4.57
1666 2111 3.436704 CGTGATGTCAGGTAAAATGTGCT 59.563 43.478 0.00 0.00 0.00 4.40
1667 2112 4.669965 CGTGATGTCAGGTAAAATGTGCTG 60.670 45.833 0.00 0.00 0.00 4.41
1668 2113 4.455533 GTGATGTCAGGTAAAATGTGCTGA 59.544 41.667 0.00 0.00 0.00 4.26
1669 2114 5.048782 GTGATGTCAGGTAAAATGTGCTGAA 60.049 40.000 0.00 0.00 0.00 3.02
1670 2115 5.181811 TGATGTCAGGTAAAATGTGCTGAAG 59.818 40.000 0.00 0.00 0.00 3.02
1671 2116 4.460263 TGTCAGGTAAAATGTGCTGAAGT 58.540 39.130 0.00 0.00 0.00 3.01
1672 2117 4.887071 TGTCAGGTAAAATGTGCTGAAGTT 59.113 37.500 0.00 0.00 0.00 2.66
1673 2118 5.359576 TGTCAGGTAAAATGTGCTGAAGTTT 59.640 36.000 0.00 0.00 0.00 2.66
1674 2119 6.544197 TGTCAGGTAAAATGTGCTGAAGTTTA 59.456 34.615 0.00 0.00 0.00 2.01
1675 2120 7.230510 TGTCAGGTAAAATGTGCTGAAGTTTAT 59.769 33.333 0.00 0.00 0.00 1.40
1676 2121 7.538678 GTCAGGTAAAATGTGCTGAAGTTTATG 59.461 37.037 0.00 0.00 0.00 1.90
1677 2122 6.808212 CAGGTAAAATGTGCTGAAGTTTATGG 59.192 38.462 0.00 0.00 0.00 2.74
1678 2123 6.719370 AGGTAAAATGTGCTGAAGTTTATGGA 59.281 34.615 0.00 0.00 0.00 3.41
1679 2124 7.397192 AGGTAAAATGTGCTGAAGTTTATGGAT 59.603 33.333 0.00 0.00 0.00 3.41
1680 2125 8.682710 GGTAAAATGTGCTGAAGTTTATGGATA 58.317 33.333 0.00 0.00 0.00 2.59
1682 2127 8.986477 AAAATGTGCTGAAGTTTATGGATAAC 57.014 30.769 0.00 0.00 0.00 1.89
1683 2128 7.701539 AATGTGCTGAAGTTTATGGATAACA 57.298 32.000 0.00 0.00 0.00 2.41
1684 2129 7.886629 ATGTGCTGAAGTTTATGGATAACAT 57.113 32.000 0.00 0.00 43.68 2.71
1691 2136 8.196802 TGAAGTTTATGGATAACATGTTCTCG 57.803 34.615 15.85 0.00 40.82 4.04
1850 2369 7.446625 AGTCTAGTTCTAAGGTCTAACGAACAA 59.553 37.037 0.00 0.00 37.14 2.83
1918 3632 4.344102 TGTTCTGATATTTACTCCCTCCGG 59.656 45.833 0.00 0.00 0.00 5.14
1922 3636 3.116862 TGATATTTACTCCCTCCGGTCCT 60.117 47.826 0.00 0.00 0.00 3.85
1924 3638 2.034436 TTTACTCCCTCCGGTCCTTT 57.966 50.000 0.00 0.00 0.00 3.11
1930 3644 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
1931 3645 1.065636 CCCTCCGGTCCTTTTTACTCC 60.066 57.143 0.00 0.00 0.00 3.85
1932 3646 1.405121 CCTCCGGTCCTTTTTACTCCG 60.405 57.143 0.00 0.00 40.72 4.63
1934 3648 0.320946 CCGGTCCTTTTTACTCCGCA 60.321 55.000 0.00 0.00 39.87 5.69
1936 3650 1.874739 CGGTCCTTTTTACTCCGCACA 60.875 52.381 0.00 0.00 35.01 4.57
1937 3651 2.433436 GGTCCTTTTTACTCCGCACAT 58.567 47.619 0.00 0.00 0.00 3.21
1938 3652 2.817844 GGTCCTTTTTACTCCGCACATT 59.182 45.455 0.00 0.00 0.00 2.71
1942 3656 3.689649 CCTTTTTACTCCGCACATTAGCT 59.310 43.478 0.00 0.00 0.00 3.32
1943 3657 4.156008 CCTTTTTACTCCGCACATTAGCTT 59.844 41.667 0.00 0.00 0.00 3.74
1944 3658 5.335661 CCTTTTTACTCCGCACATTAGCTTT 60.336 40.000 0.00 0.00 0.00 3.51
1945 3659 4.678509 TTTACTCCGCACATTAGCTTTG 57.321 40.909 0.00 0.00 0.00 2.77
1946 3660 2.185004 ACTCCGCACATTAGCTTTGT 57.815 45.000 0.00 0.00 0.00 2.83
1947 3661 2.076863 ACTCCGCACATTAGCTTTGTC 58.923 47.619 0.00 0.00 0.00 3.18
1948 3662 2.289694 ACTCCGCACATTAGCTTTGTCT 60.290 45.455 0.00 0.00 0.00 3.41
1949 3663 2.076100 TCCGCACATTAGCTTTGTCTG 58.924 47.619 0.00 0.00 0.00 3.51
1950 3664 2.076100 CCGCACATTAGCTTTGTCTGA 58.924 47.619 0.00 0.00 0.00 3.27
1951 3665 2.483877 CCGCACATTAGCTTTGTCTGAA 59.516 45.455 0.00 0.00 0.00 3.02
1952 3666 3.425359 CCGCACATTAGCTTTGTCTGAAG 60.425 47.826 0.00 0.00 0.00 3.02
1953 3667 3.187227 CGCACATTAGCTTTGTCTGAAGT 59.813 43.478 0.00 0.00 0.00 3.01
1954 3668 4.667668 CGCACATTAGCTTTGTCTGAAGTC 60.668 45.833 0.00 0.00 0.00 3.01
1955 3669 4.378874 GCACATTAGCTTTGTCTGAAGTCC 60.379 45.833 0.00 0.00 0.00 3.85
1956 3670 4.756642 CACATTAGCTTTGTCTGAAGTCCA 59.243 41.667 0.00 0.00 0.00 4.02
1957 3671 5.239306 CACATTAGCTTTGTCTGAAGTCCAA 59.761 40.000 0.00 0.00 0.00 3.53
1958 3672 5.471456 ACATTAGCTTTGTCTGAAGTCCAAG 59.529 40.000 0.00 0.00 0.00 3.61
1962 3676 4.096984 AGCTTTGTCTGAAGTCCAAGTTTG 59.903 41.667 0.00 0.00 0.00 2.93
1963 3677 4.354587 CTTTGTCTGAAGTCCAAGTTTGC 58.645 43.478 0.00 0.00 0.00 3.68
1964 3678 3.281727 TGTCTGAAGTCCAAGTTTGCT 57.718 42.857 0.00 0.00 0.00 3.91
1965 3679 4.415881 TGTCTGAAGTCCAAGTTTGCTA 57.584 40.909 0.00 0.00 0.00 3.49
1966 3680 4.776349 TGTCTGAAGTCCAAGTTTGCTAA 58.224 39.130 0.00 0.00 0.00 3.09
1967 3681 4.816385 TGTCTGAAGTCCAAGTTTGCTAAG 59.184 41.667 0.00 0.00 0.00 2.18
1969 3683 5.297029 GTCTGAAGTCCAAGTTTGCTAAGTT 59.703 40.000 0.00 0.00 0.00 2.66
1970 3684 5.885912 TCTGAAGTCCAAGTTTGCTAAGTTT 59.114 36.000 0.00 0.00 0.00 2.66
1971 3685 5.890334 TGAAGTCCAAGTTTGCTAAGTTTG 58.110 37.500 0.00 0.00 0.00 2.93
1972 3686 5.650266 TGAAGTCCAAGTTTGCTAAGTTTGA 59.350 36.000 0.00 0.00 0.00 2.69
1973 3687 5.500645 AGTCCAAGTTTGCTAAGTTTGAC 57.499 39.130 18.57 18.57 38.60 3.18
1976 3690 4.707448 TCCAAGTTTGCTAAGTTTGACCAA 59.293 37.500 0.00 0.00 0.00 3.67
1977 3691 5.186021 TCCAAGTTTGCTAAGTTTGACCAAA 59.814 36.000 0.00 0.00 0.00 3.28
1979 3693 6.538381 CCAAGTTTGCTAAGTTTGACCAAATT 59.462 34.615 0.00 0.00 32.36 1.82
1981 3695 9.092876 CAAGTTTGCTAAGTTTGACCAAATTTA 57.907 29.630 9.17 9.17 33.31 1.40
2062 3776 9.875691 TCCGAGATGGATCTAATAATAAATGTG 57.124 33.333 0.00 0.00 43.74 3.21
2063 3777 9.658799 CCGAGATGGATCTAATAATAAATGTGT 57.341 33.333 0.00 0.00 42.00 3.72
2119 3833 5.972107 CTTGGTCAAAGTTGGATGAGATT 57.028 39.130 0.00 0.00 0.00 2.40
2120 3834 5.706916 CTTGGTCAAAGTTGGATGAGATTG 58.293 41.667 0.00 0.00 0.00 2.67
2121 3835 4.984295 TGGTCAAAGTTGGATGAGATTGA 58.016 39.130 0.00 0.00 0.00 2.57
2122 3836 4.761739 TGGTCAAAGTTGGATGAGATTGAC 59.238 41.667 7.68 7.68 43.51 3.18
2123 3837 5.006386 GGTCAAAGTTGGATGAGATTGACT 58.994 41.667 13.97 0.00 43.66 3.41
2124 3838 5.474876 GGTCAAAGTTGGATGAGATTGACTT 59.525 40.000 13.97 0.00 43.66 3.01
2125 3839 6.348868 GGTCAAAGTTGGATGAGATTGACTTC 60.349 42.308 13.97 0.00 43.66 3.01
2126 3840 6.205464 GTCAAAGTTGGATGAGATTGACTTCA 59.795 38.462 8.70 0.00 41.92 3.02
2127 3841 6.429078 TCAAAGTTGGATGAGATTGACTTCAG 59.571 38.462 0.00 0.00 0.00 3.02
2128 3842 5.752036 AGTTGGATGAGATTGACTTCAGA 57.248 39.130 0.00 0.00 0.00 3.27
2129 3843 5.486526 AGTTGGATGAGATTGACTTCAGAC 58.513 41.667 0.00 0.00 0.00 3.51
2130 3844 5.012458 AGTTGGATGAGATTGACTTCAGACA 59.988 40.000 0.00 0.00 0.00 3.41
2131 3845 5.488262 TGGATGAGATTGACTTCAGACAA 57.512 39.130 0.00 0.00 34.59 3.18
2132 3846 5.868454 TGGATGAGATTGACTTCAGACAAA 58.132 37.500 0.00 0.00 33.89 2.83
2133 3847 5.702670 TGGATGAGATTGACTTCAGACAAAC 59.297 40.000 0.00 0.00 33.89 2.93
2134 3848 5.123027 GGATGAGATTGACTTCAGACAAACC 59.877 44.000 0.00 0.00 33.89 3.27
2135 3849 5.296151 TGAGATTGACTTCAGACAAACCT 57.704 39.130 0.00 0.00 33.89 3.50
2136 3850 6.419484 TGAGATTGACTTCAGACAAACCTA 57.581 37.500 0.00 0.00 33.89 3.08
2137 3851 6.826668 TGAGATTGACTTCAGACAAACCTAA 58.173 36.000 0.00 0.00 33.89 2.69
2138 3852 7.453393 TGAGATTGACTTCAGACAAACCTAAT 58.547 34.615 0.00 0.00 33.89 1.73
2139 3853 8.593679 TGAGATTGACTTCAGACAAACCTAATA 58.406 33.333 0.00 0.00 33.89 0.98
2140 3854 9.606631 GAGATTGACTTCAGACAAACCTAATAT 57.393 33.333 0.00 0.00 33.89 1.28
2141 3855 9.388506 AGATTGACTTCAGACAAACCTAATATG 57.611 33.333 0.00 0.00 33.89 1.78
2142 3856 6.985188 TGACTTCAGACAAACCTAATATGC 57.015 37.500 0.00 0.00 0.00 3.14
2143 3857 6.472016 TGACTTCAGACAAACCTAATATGCA 58.528 36.000 0.00 0.00 0.00 3.96
2144 3858 6.595326 TGACTTCAGACAAACCTAATATGCAG 59.405 38.462 0.00 0.00 0.00 4.41
2150 3864 8.318412 TCAGACAAACCTAATATGCAGAGTAAA 58.682 33.333 0.00 0.00 0.00 2.01
2152 3866 9.515226 AGACAAACCTAATATGCAGAGTAAAAA 57.485 29.630 0.00 0.00 0.00 1.94
2156 3870 8.507524 AACCTAATATGCAGAGTAAAAAGGAC 57.492 34.615 2.56 0.00 0.00 3.85
2184 4152 6.994221 AGGGAGTACCATCGACATAATTAAG 58.006 40.000 0.00 0.00 43.89 1.85
2444 4695 4.984161 CACTTTGGGTTGCTTATTCAGTTG 59.016 41.667 0.00 0.00 0.00 3.16
2648 4899 9.593134 GTATCCTGCTCGATTGATTAGATTATT 57.407 33.333 0.00 0.00 0.00 1.40
2715 4966 1.777101 TTTAACAATTGCACTGCGCC 58.223 45.000 4.18 0.00 41.33 6.53
2727 4978 0.523072 ACTGCGCCTTTAGCACATTG 59.477 50.000 4.18 0.00 44.04 2.82
3031 5316 7.781693 AGATTAATGCACCTGATATTTTGGACT 59.218 33.333 0.00 0.00 0.00 3.85
3038 5323 3.435601 CCTGATATTTTGGACTGGAGGGG 60.436 52.174 0.00 0.00 0.00 4.79
3094 5379 5.962031 TCCTAACTATCAGGAAGGCTGTTAA 59.038 40.000 0.00 0.00 39.28 2.01
3121 5406 2.158623 TCACCTTGCTTCCAATGTGTCT 60.159 45.455 10.22 0.00 43.62 3.41
3167 5523 7.652909 ACAATGTTTGATAGTTTGTTGTCCATG 59.347 33.333 0.00 0.00 0.00 3.66
3200 5556 7.392673 AGTTTGCTGTTTCTCATTGTCATCTAT 59.607 33.333 0.00 0.00 0.00 1.98
3209 5568 4.535781 TCATTGTCATCTATTGGGGTTGG 58.464 43.478 0.00 0.00 0.00 3.77
3221 5580 0.331616 GGGGTTGGTTGGCTAGTCAT 59.668 55.000 0.00 0.00 0.00 3.06
3264 5628 7.465353 TTGCCATGTCAAATTTCATTCTCTA 57.535 32.000 0.00 0.00 0.00 2.43
3265 5629 7.465353 TGCCATGTCAAATTTCATTCTCTAA 57.535 32.000 0.00 0.00 0.00 2.10
3272 5636 9.065798 TGTCAAATTTCATTCTCTAATGTGACA 57.934 29.630 13.30 13.30 43.97 3.58
3283 5647 7.129457 TCTCTAATGTGACAAAGGATGCTAT 57.871 36.000 0.00 0.00 0.00 2.97
3312 5676 8.864069 TTTTGGTGTGTTCTTAATAACATGTG 57.136 30.769 9.35 0.00 41.18 3.21
3333 5697 9.586435 CATGTGTGTAGAATGATCTAAGTTACA 57.414 33.333 0.00 0.00 39.81 2.41
3389 5753 5.690857 GTCCTTAGTCTGTCTTGTTGTACAC 59.309 44.000 0.00 0.00 0.00 2.90
3526 5891 9.162764 GTACAAGATACCACAGTTTTGACATAT 57.837 33.333 0.00 0.00 0.00 1.78
3665 6246 1.442526 GGCCGGAGCTGATCAACATG 61.443 60.000 5.05 0.00 39.73 3.21
3666 6247 2.020131 CCGGAGCTGATCAACATGC 58.980 57.895 0.00 0.00 0.00 4.06
3667 6248 0.463295 CCGGAGCTGATCAACATGCT 60.463 55.000 6.88 6.88 36.35 3.79
3668 6249 0.935898 CGGAGCTGATCAACATGCTC 59.064 55.000 20.81 20.81 42.84 4.26
3669 6250 1.741394 CGGAGCTGATCAACATGCTCA 60.741 52.381 26.68 0.00 44.02 4.26
3670 6251 1.941294 GGAGCTGATCAACATGCTCAG 59.059 52.381 26.68 6.80 44.02 3.35
3748 6344 1.229529 GTCCCCCTCACTCCTTCCA 60.230 63.158 0.00 0.00 0.00 3.53
3753 6349 2.125350 CTCACTCCTTCCAGCCGC 60.125 66.667 0.00 0.00 0.00 6.53
3754 6350 2.604686 TCACTCCTTCCAGCCGCT 60.605 61.111 0.00 0.00 0.00 5.52
3755 6351 1.304962 TCACTCCTTCCAGCCGCTA 60.305 57.895 0.00 0.00 0.00 4.26
3800 6397 2.764128 CTCGCCTCTAGCCCCCAA 60.764 66.667 0.00 0.00 38.78 4.12
3893 6491 7.040494 TGTCTGAATGAAAAACAGCAAAATCA 58.960 30.769 0.00 0.00 0.00 2.57
3982 6925 1.075601 TCTCTTTGCTTCCCCATGGT 58.924 50.000 11.73 0.00 0.00 3.55
4080 7042 2.246719 GCAGAGTGCGGAAGGATAAT 57.753 50.000 0.00 0.00 31.71 1.28
4086 7048 0.464036 TGCGGAAGGATAATGACGCT 59.536 50.000 8.32 0.00 46.31 5.07
4309 7276 7.338196 TGCTATCAAACGGGATGAATTTTTAGA 59.662 33.333 0.00 0.00 0.00 2.10
4310 7277 7.644157 GCTATCAAACGGGATGAATTTTTAGAC 59.356 37.037 0.00 0.00 0.00 2.59
4311 7278 7.703058 ATCAAACGGGATGAATTTTTAGACT 57.297 32.000 0.00 0.00 0.00 3.24
4312 7279 7.141100 TCAAACGGGATGAATTTTTAGACTC 57.859 36.000 0.00 0.00 0.00 3.36
4313 7280 6.150474 TCAAACGGGATGAATTTTTAGACTCC 59.850 38.462 0.00 0.00 0.00 3.85
4314 7281 5.174037 ACGGGATGAATTTTTAGACTCCA 57.826 39.130 0.00 0.00 0.00 3.86
4315 7282 5.755849 ACGGGATGAATTTTTAGACTCCAT 58.244 37.500 0.00 0.00 0.00 3.41
4316 7283 5.823045 ACGGGATGAATTTTTAGACTCCATC 59.177 40.000 0.00 0.00 0.00 3.51
4317 7284 6.058183 CGGGATGAATTTTTAGACTCCATCT 58.942 40.000 0.00 0.00 41.95 2.90
4318 7285 7.147549 ACGGGATGAATTTTTAGACTCCATCTA 60.148 37.037 0.00 0.00 39.04 1.98
4319 7286 7.880195 CGGGATGAATTTTTAGACTCCATCTAT 59.120 37.037 0.00 0.00 39.75 1.98
4320 7287 9.225436 GGGATGAATTTTTAGACTCCATCTATC 57.775 37.037 0.00 0.00 39.75 2.08
4332 7299 7.678837 AGACTCCATCTATCTGAATTCATTCC 58.321 38.462 8.96 0.00 35.15 3.01
4333 7300 7.291885 AGACTCCATCTATCTGAATTCATTCCA 59.708 37.037 8.96 0.00 35.15 3.53
4353 7345 9.184523 CATTCCAACCTCAGTATTATGGTTTAA 57.815 33.333 0.00 0.00 40.39 1.52
4459 7451 4.006780 TCTCACTGATGCAGTTAAAGCA 57.993 40.909 6.34 6.34 42.59 3.91
4530 7522 4.040461 AGCACCTAGAGCTGTAAGTTTTCA 59.960 41.667 8.60 0.00 41.61 2.69
4554 7546 9.249457 TCAGCATTGTCTAATAATTCTTCTACG 57.751 33.333 0.00 0.00 0.00 3.51
4556 7548 9.035607 AGCATTGTCTAATAATTCTTCTACGTG 57.964 33.333 0.00 0.00 0.00 4.49
4559 7551 8.922058 TTGTCTAATAATTCTTCTACGTGTCC 57.078 34.615 0.00 0.00 0.00 4.02
4642 7660 5.627499 TCATGGTTCATGAAGCTTTGTAC 57.373 39.130 31.37 9.86 46.17 2.90
4722 7740 3.245586 TGGATACCCTGGTTGAGCAAAAT 60.246 43.478 0.00 0.00 0.00 1.82
4785 7803 1.902508 ACAGGAATGGGCGATATCGAT 59.097 47.619 28.63 10.52 43.02 3.59
4871 7889 4.822685 ATAGCATCAGCCAAGATCCTAG 57.177 45.455 0.00 0.00 43.56 3.02
4874 7892 3.261390 AGCATCAGCCAAGATCCTAGATC 59.739 47.826 0.00 0.00 43.56 2.75
4918 7936 6.472016 TGAATTTGCTGGTAGTGTCATCTTA 58.528 36.000 0.00 0.00 0.00 2.10
4958 7976 3.758554 GCTGGGCTTTACTTTGATTGAGA 59.241 43.478 0.00 0.00 0.00 3.27
5029 8049 7.386299 TGTTGTTAAACAAGTGTTTTTGATGCT 59.614 29.630 14.20 0.00 45.07 3.79
5030 8050 7.897575 TGTTAAACAAGTGTTTTTGATGCTT 57.102 28.000 14.20 0.00 45.07 3.91
5103 8188 4.290155 CTGGTTGTTCTTTGTACACATGC 58.710 43.478 0.00 0.00 0.00 4.06
5104 8189 3.242903 TGGTTGTTCTTTGTACACATGCG 60.243 43.478 0.00 0.00 0.00 4.73
5106 8191 4.496673 GGTTGTTCTTTGTACACATGCGAA 60.497 41.667 0.00 0.00 0.00 4.70
5107 8192 4.884458 TGTTCTTTGTACACATGCGAAA 57.116 36.364 0.00 0.00 0.00 3.46
5108 8193 5.431420 TGTTCTTTGTACACATGCGAAAT 57.569 34.783 0.00 0.00 0.00 2.17
5109 8194 5.211454 TGTTCTTTGTACACATGCGAAATG 58.789 37.500 0.00 0.00 0.00 2.32
5110 8195 5.212194 GTTCTTTGTACACATGCGAAATGT 58.788 37.500 0.00 0.00 0.00 2.71
5111 8196 5.431420 TCTTTGTACACATGCGAAATGTT 57.569 34.783 0.00 0.00 0.00 2.71
5112 8197 6.546972 TCTTTGTACACATGCGAAATGTTA 57.453 33.333 0.00 0.00 0.00 2.41
5114 8199 5.933187 TTGTACACATGCGAAATGTTACT 57.067 34.783 0.00 0.00 0.00 2.24
5116 8201 4.390603 TGTACACATGCGAAATGTTACTCC 59.609 41.667 0.00 0.00 0.00 3.85
5117 8202 2.415168 ACACATGCGAAATGTTACTCCG 59.585 45.455 1.74 0.00 0.00 4.63
5118 8203 1.396996 ACATGCGAAATGTTACTCCGC 59.603 47.619 0.00 0.00 45.28 5.54
5119 8204 1.014352 ATGCGAAATGTTACTCCGCC 58.986 50.000 0.00 0.00 44.55 6.13
5123 8209 1.828979 GAAATGTTACTCCGCCCCAA 58.171 50.000 0.00 0.00 0.00 4.12
5125 8211 2.052782 AATGTTACTCCGCCCCAATC 57.947 50.000 0.00 0.00 0.00 2.67
5143 8229 5.179182 CCCAATCCTTTGTGTTTGTTATTGC 59.821 40.000 0.00 0.00 0.00 3.56
5144 8230 5.990996 CCAATCCTTTGTGTTTGTTATTGCT 59.009 36.000 0.00 0.00 0.00 3.91
5145 8231 6.073657 CCAATCCTTTGTGTTTGTTATTGCTG 60.074 38.462 0.00 0.00 0.00 4.41
5146 8232 4.942852 TCCTTTGTGTTTGTTATTGCTGG 58.057 39.130 0.00 0.00 0.00 4.85
5148 8234 5.105146 TCCTTTGTGTTTGTTATTGCTGGTT 60.105 36.000 0.00 0.00 0.00 3.67
5149 8235 6.096987 TCCTTTGTGTTTGTTATTGCTGGTTA 59.903 34.615 0.00 0.00 0.00 2.85
5150 8236 6.928492 CCTTTGTGTTTGTTATTGCTGGTTAT 59.072 34.615 0.00 0.00 0.00 1.89
5151 8237 7.440856 CCTTTGTGTTTGTTATTGCTGGTTATT 59.559 33.333 0.00 0.00 0.00 1.40
5152 8238 9.469807 CTTTGTGTTTGTTATTGCTGGTTATTA 57.530 29.630 0.00 0.00 0.00 0.98
5153 8239 9.988815 TTTGTGTTTGTTATTGCTGGTTATTAT 57.011 25.926 0.00 0.00 0.00 1.28
5154 8240 9.988815 TTGTGTTTGTTATTGCTGGTTATTATT 57.011 25.926 0.00 0.00 0.00 1.40
5155 8241 9.988815 TGTGTTTGTTATTGCTGGTTATTATTT 57.011 25.926 0.00 0.00 0.00 1.40
5178 8264 8.924511 TTTTCACTATGATTTTCACCTCTCTT 57.075 30.769 0.00 0.00 0.00 2.85
5179 8265 8.553459 TTTCACTATGATTTTCACCTCTCTTC 57.447 34.615 0.00 0.00 0.00 2.87
5180 8266 6.644347 TCACTATGATTTTCACCTCTCTTCC 58.356 40.000 0.00 0.00 0.00 3.46
5181 8267 5.521735 CACTATGATTTTCACCTCTCTTCCG 59.478 44.000 0.00 0.00 0.00 4.30
5182 8268 4.559862 ATGATTTTCACCTCTCTTCCGT 57.440 40.909 0.00 0.00 0.00 4.69
5183 8269 4.351874 TGATTTTCACCTCTCTTCCGTT 57.648 40.909 0.00 0.00 0.00 4.44
5184 8270 4.714632 TGATTTTCACCTCTCTTCCGTTT 58.285 39.130 0.00 0.00 0.00 3.60
5185 8271 5.130350 TGATTTTCACCTCTCTTCCGTTTT 58.870 37.500 0.00 0.00 0.00 2.43
5186 8272 5.592688 TGATTTTCACCTCTCTTCCGTTTTT 59.407 36.000 0.00 0.00 0.00 1.94
5240 8326 2.048023 AGCAATGATGGTGCGGTGG 61.048 57.895 0.00 0.00 46.86 4.61
5241 8327 2.342650 GCAATGATGGTGCGGTGGT 61.343 57.895 0.00 0.00 31.20 4.16
5256 8342 1.043673 GTGGTGCCTCTCCCTCGTAT 61.044 60.000 0.00 0.00 0.00 3.06
5261 8347 2.103263 GTGCCTCTCCCTCGTATTCATT 59.897 50.000 0.00 0.00 0.00 2.57
5265 8351 3.895656 CCTCTCCCTCGTATTCATTACCA 59.104 47.826 0.00 0.00 0.00 3.25
5269 8355 4.448210 TCCCTCGTATTCATTACCAAAGC 58.552 43.478 0.00 0.00 0.00 3.51
5284 8370 3.074412 CCAAAGCGTTCTGTAACATCCT 58.926 45.455 0.00 0.00 35.16 3.24
5287 8373 1.623811 AGCGTTCTGTAACATCCTGGT 59.376 47.619 0.00 0.00 35.16 4.00
5297 8383 6.099269 TCTGTAACATCCTGGTAGTAATTCCC 59.901 42.308 0.00 0.00 0.00 3.97
5417 8511 6.442513 GGTGAATAACCCTTCTCTTCAATG 57.557 41.667 0.00 0.00 44.02 2.82
5418 8512 5.358160 GGTGAATAACCCTTCTCTTCAATGG 59.642 44.000 0.00 0.00 44.02 3.16
5457 8551 3.555586 CCTCCAAGCCCACATTCTTTTTG 60.556 47.826 0.00 0.00 0.00 2.44
5458 8552 3.037549 TCCAAGCCCACATTCTTTTTGT 58.962 40.909 0.00 0.00 0.00 2.83
5459 8553 3.132925 CCAAGCCCACATTCTTTTTGTG 58.867 45.455 0.00 0.00 43.25 3.33
5495 8590 7.992608 AGCTACCAAAATTGTTTCCTGATTTTT 59.007 29.630 0.00 0.00 32.35 1.94
5505 8600 4.519540 TTCCTGATTTTTAGCACAAGCC 57.480 40.909 0.00 0.00 43.56 4.35
5518 8613 3.963374 AGCACAAGCCTAGATATCACTCA 59.037 43.478 5.32 0.00 43.56 3.41
5535 8630 3.736252 CACTCAGTAGTTCAAACTCACCG 59.264 47.826 0.00 0.00 40.37 4.94
5558 8670 8.340443 ACCGAAATGAGTAAGTTAAACAAAGTC 58.660 33.333 0.00 0.00 0.00 3.01
5583 8695 9.123902 TCCCAATAGATTGAATATCTTGTTGTG 57.876 33.333 3.76 0.00 40.14 3.33
5587 8699 5.513233 AGATTGAATATCTTGTTGTGGCCT 58.487 37.500 3.32 0.00 0.00 5.19
5625 8737 9.244799 AGAAAGGCTACGTTTAAAATTTCTTTG 57.755 29.630 0.00 0.00 33.24 2.77
5626 8738 9.240159 GAAAGGCTACGTTTAAAATTTCTTTGA 57.760 29.630 0.00 0.00 0.00 2.69
5627 8739 9.758651 AAAGGCTACGTTTAAAATTTCTTTGAT 57.241 25.926 0.00 0.00 0.00 2.57
5629 8741 9.406828 AGGCTACGTTTAAAATTTCTTTGATTC 57.593 29.630 0.00 0.00 0.00 2.52
5630 8742 8.363029 GGCTACGTTTAAAATTTCTTTGATTCG 58.637 33.333 0.00 0.00 0.00 3.34
5631 8743 8.898792 GCTACGTTTAAAATTTCTTTGATTCGT 58.101 29.630 0.00 0.00 0.00 3.85
5656 8769 2.345641 CGTTTGAGGCTGACACGATTAG 59.654 50.000 6.83 0.00 32.51 1.73
5667 8780 3.057526 TGACACGATTAGATATGAGGGCG 60.058 47.826 0.00 0.00 0.00 6.13
5757 8870 0.537188 AGTTCATCTAGCCCACCACG 59.463 55.000 0.00 0.00 0.00 4.94
5758 8871 0.462047 GTTCATCTAGCCCACCACGG 60.462 60.000 0.00 0.00 0.00 4.94
5783 8898 5.189934 GCATCTACCCCCTGCTATAAATAGT 59.810 44.000 0.00 0.00 33.15 2.12
5786 8901 6.571624 TCTACCCCCTGCTATAAATAGTCAT 58.428 40.000 0.00 0.00 32.96 3.06
5792 8907 5.104735 CCCTGCTATAAATAGTCATCCCTCC 60.105 48.000 0.00 0.00 32.96 4.30
5804 8919 4.540099 AGTCATCCCTCCCTGTCAATTTTA 59.460 41.667 0.00 0.00 0.00 1.52
5806 8921 4.788075 TCATCCCTCCCTGTCAATTTTAGA 59.212 41.667 0.00 0.00 0.00 2.10
5807 8922 4.569719 TCCCTCCCTGTCAATTTTAGAC 57.430 45.455 0.00 0.00 36.55 2.59
5810 8925 4.459337 CCCTCCCTGTCAATTTTAGACAAC 59.541 45.833 0.00 0.00 44.60 3.32
5811 8926 4.459337 CCTCCCTGTCAATTTTAGACAACC 59.541 45.833 0.00 0.00 44.60 3.77
5812 8927 5.316987 CTCCCTGTCAATTTTAGACAACCT 58.683 41.667 0.00 0.00 44.60 3.50
5813 8928 6.442541 TCCCTGTCAATTTTAGACAACCTA 57.557 37.500 0.00 0.00 44.60 3.08
5814 8929 6.472887 TCCCTGTCAATTTTAGACAACCTAG 58.527 40.000 0.00 0.00 44.60 3.02
5815 8930 5.648092 CCCTGTCAATTTTAGACAACCTAGG 59.352 44.000 7.41 7.41 44.60 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.172505 TCTTCACCTGTTTGCCTGAAGA 59.827 45.455 5.11 5.11 44.00 2.87
1 2 2.575532 TCTTCACCTGTTTGCCTGAAG 58.424 47.619 0.00 0.00 40.62 3.02
7 8 3.630312 TGGTTAGTTCTTCACCTGTTTGC 59.370 43.478 0.00 0.00 0.00 3.68
37 38 4.524316 AACATGGATGTGGTTGTTCATG 57.476 40.909 0.00 0.00 41.61 3.07
58 59 4.041567 AGTTTCTGGATGGTGTGACATGTA 59.958 41.667 0.00 0.00 0.00 2.29
119 120 3.764885 ATGCTGAAATGCCGAGTTAAC 57.235 42.857 0.00 0.00 0.00 2.01
166 170 3.317603 AAACCATATTTGTGCCACTGC 57.682 42.857 0.00 0.00 38.26 4.40
171 175 4.799564 TGGAGAAAACCATATTTGTGCC 57.200 40.909 0.00 0.00 34.77 5.01
173 177 9.573133 GAGTATTTGGAGAAAACCATATTTGTG 57.427 33.333 0.00 0.00 39.82 3.33
184 188 9.793259 ATTCAGTTACTGAGTATTTGGAGAAAA 57.207 29.630 14.99 0.00 41.75 2.29
192 196 9.890629 TTGATGCTATTCAGTTACTGAGTATTT 57.109 29.630 16.04 6.19 41.75 1.40
227 254 3.916359 TGTTACTCACCACCTCAAACA 57.084 42.857 0.00 0.00 0.00 2.83
231 258 3.262405 GGGTAATGTTACTCACCACCTCA 59.738 47.826 3.22 0.00 34.26 3.86
247 279 0.908910 TCAGCGGTGTCATGGGTAAT 59.091 50.000 15.22 0.00 0.00 1.89
411 452 3.030291 GGGAGATCAGACTGTGAGATGT 58.970 50.000 1.59 0.00 39.07 3.06
474 515 1.342474 TGCCTTTCCAGTGGTTTCCAA 60.342 47.619 9.54 0.00 34.18 3.53
478 519 2.676748 TCATTGCCTTTCCAGTGGTTT 58.323 42.857 9.54 0.00 0.00 3.27
481 522 1.547372 CCTTCATTGCCTTTCCAGTGG 59.453 52.381 1.40 1.40 0.00 4.00
500 541 0.464554 CGGCTTCTTCTCCAATCCCC 60.465 60.000 0.00 0.00 0.00 4.81
593 637 4.851179 CTTCCCTTACCGCCGCCC 62.851 72.222 0.00 0.00 0.00 6.13
649 693 3.400054 CCGGGGAGTGGGAAGACC 61.400 72.222 0.00 0.00 40.81 3.85
696 740 4.424566 GCGTGTTCGGGTAGCGGA 62.425 66.667 0.00 0.00 37.56 5.54
715 759 5.004156 GGTAGCGTACTCTTGAAAATACGTG 59.996 44.000 0.00 0.00 41.83 4.49
716 760 5.098211 GGTAGCGTACTCTTGAAAATACGT 58.902 41.667 0.00 0.00 41.83 3.57
723 767 3.054139 TCCTAGGGTAGCGTACTCTTGAA 60.054 47.826 9.46 0.00 40.67 2.69
724 768 2.507058 TCCTAGGGTAGCGTACTCTTGA 59.493 50.000 9.46 0.14 40.67 3.02
727 771 1.202627 CGTCCTAGGGTAGCGTACTCT 60.203 57.143 9.46 3.58 43.28 3.24
758 802 0.100146 CCGGGTAGCGTAGTCTTGAC 59.900 60.000 0.00 0.00 0.00 3.18
765 809 1.318158 ACTGGAACCGGGTAGCGTAG 61.318 60.000 6.32 0.00 0.00 3.51
783 827 3.411351 CACGCGCCACACAGGTAC 61.411 66.667 5.73 0.00 40.61 3.34
810 854 1.341089 TGGATCCGATATCTCTCCCGG 60.341 57.143 7.39 0.00 43.02 5.73
811 855 2.130272 TGGATCCGATATCTCTCCCG 57.870 55.000 7.39 0.00 0.00 5.14
831 901 1.826487 TGAGCCGATCCGATTCCGA 60.826 57.895 0.00 0.00 38.22 4.55
832 902 1.661821 GTGAGCCGATCCGATTCCG 60.662 63.158 0.00 0.00 0.00 4.30
833 903 0.105039 AAGTGAGCCGATCCGATTCC 59.895 55.000 0.00 0.00 0.00 3.01
834 904 1.202417 TCAAGTGAGCCGATCCGATTC 60.202 52.381 0.00 0.00 0.00 2.52
835 905 0.824109 TCAAGTGAGCCGATCCGATT 59.176 50.000 0.00 0.00 0.00 3.34
836 906 1.043816 ATCAAGTGAGCCGATCCGAT 58.956 50.000 0.00 0.00 0.00 4.18
871 941 3.077359 AGAATGCTGCTTGTTGTACTCC 58.923 45.455 0.00 0.00 0.00 3.85
988 1066 0.173481 TTCGGCATCTTCTCCGTCTG 59.827 55.000 0.47 0.00 45.44 3.51
991 1069 1.218316 GGTTCGGCATCTTCTCCGT 59.782 57.895 0.47 0.00 45.44 4.69
1541 1619 7.552687 AGTGCATAAATCAGAATTACGAAAGGA 59.447 33.333 0.00 0.00 0.00 3.36
1542 1620 7.697691 AGTGCATAAATCAGAATTACGAAAGG 58.302 34.615 0.00 0.00 0.00 3.11
1547 1671 7.389603 TCGTAGTGCATAAATCAGAATTACG 57.610 36.000 0.00 0.00 0.00 3.18
1574 1701 4.096231 TGAATGCATTTAATCACGTCAGGG 59.904 41.667 14.33 0.00 0.00 4.45
1576 1703 5.872635 AGTGAATGCATTTAATCACGTCAG 58.127 37.500 14.33 0.00 45.21 3.51
1612 1756 6.845302 TCACATGACAAGATCATTTAAGCAC 58.155 36.000 0.00 0.00 46.54 4.40
1648 2093 5.072741 ACTTCAGCACATTTTACCTGACAT 58.927 37.500 0.00 0.00 34.36 3.06
1649 2094 4.460263 ACTTCAGCACATTTTACCTGACA 58.540 39.130 0.00 0.00 34.36 3.58
1650 2095 5.438761 AACTTCAGCACATTTTACCTGAC 57.561 39.130 0.00 0.00 34.36 3.51
1651 2096 7.309133 CCATAAACTTCAGCACATTTTACCTGA 60.309 37.037 0.00 0.00 32.90 3.86
1653 2098 6.719370 TCCATAAACTTCAGCACATTTTACCT 59.281 34.615 0.00 0.00 0.00 3.08
1658 2103 8.121305 TGTTATCCATAAACTTCAGCACATTT 57.879 30.769 0.00 0.00 0.00 2.32
1659 2104 7.701539 TGTTATCCATAAACTTCAGCACATT 57.298 32.000 0.00 0.00 0.00 2.71
1661 2106 6.658816 ACATGTTATCCATAAACTTCAGCACA 59.341 34.615 0.00 0.00 30.71 4.57
1663 2108 7.611467 AGAACATGTTATCCATAAACTTCAGCA 59.389 33.333 11.95 0.00 30.71 4.41
1664 2109 7.989826 AGAACATGTTATCCATAAACTTCAGC 58.010 34.615 11.95 0.00 30.71 4.26
1665 2110 8.331022 CGAGAACATGTTATCCATAAACTTCAG 58.669 37.037 23.70 5.10 30.71 3.02
1666 2111 7.822334 ACGAGAACATGTTATCCATAAACTTCA 59.178 33.333 23.70 0.00 30.71 3.02
1667 2112 8.197988 ACGAGAACATGTTATCCATAAACTTC 57.802 34.615 23.70 2.77 30.71 3.01
1668 2113 8.561738 AACGAGAACATGTTATCCATAAACTT 57.438 30.769 23.70 4.99 30.71 2.66
1669 2114 8.041323 AGAACGAGAACATGTTATCCATAAACT 58.959 33.333 23.70 13.20 30.71 2.66
1670 2115 8.116753 CAGAACGAGAACATGTTATCCATAAAC 58.883 37.037 23.70 11.57 30.71 2.01
1671 2116 7.822334 ACAGAACGAGAACATGTTATCCATAAA 59.178 33.333 23.70 0.00 30.71 1.40
1672 2117 7.327975 ACAGAACGAGAACATGTTATCCATAA 58.672 34.615 23.70 0.00 30.71 1.90
1673 2118 6.873997 ACAGAACGAGAACATGTTATCCATA 58.126 36.000 23.70 0.00 30.71 2.74
1674 2119 5.734720 ACAGAACGAGAACATGTTATCCAT 58.265 37.500 23.70 14.53 0.00 3.41
1675 2120 5.147330 ACAGAACGAGAACATGTTATCCA 57.853 39.130 23.70 0.00 0.00 3.41
1676 2121 5.637810 TCAACAGAACGAGAACATGTTATCC 59.362 40.000 23.70 12.38 33.04 2.59
1677 2122 6.706055 TCAACAGAACGAGAACATGTTATC 57.294 37.500 20.77 20.77 33.04 1.75
1678 2123 7.361201 CCATTCAACAGAACGAGAACATGTTAT 60.361 37.037 11.95 8.58 33.04 1.89
1679 2124 6.073276 CCATTCAACAGAACGAGAACATGTTA 60.073 38.462 11.95 0.00 33.04 2.41
1680 2125 5.277974 CCATTCAACAGAACGAGAACATGTT 60.278 40.000 11.78 11.78 34.56 2.71
1681 2126 4.214119 CCATTCAACAGAACGAGAACATGT 59.786 41.667 0.00 0.00 0.00 3.21
1682 2127 4.378770 CCCATTCAACAGAACGAGAACATG 60.379 45.833 0.00 0.00 0.00 3.21
1683 2128 3.753272 CCCATTCAACAGAACGAGAACAT 59.247 43.478 0.00 0.00 0.00 2.71
1684 2129 3.138304 CCCATTCAACAGAACGAGAACA 58.862 45.455 0.00 0.00 0.00 3.18
1691 2136 1.327303 TGGTGCCCATTCAACAGAAC 58.673 50.000 0.00 0.00 0.00 3.01
1918 3632 4.436986 GCTAATGTGCGGAGTAAAAAGGAC 60.437 45.833 0.00 0.00 0.00 3.85
1922 3636 5.009210 ACAAAGCTAATGTGCGGAGTAAAAA 59.991 36.000 4.40 0.00 38.13 1.94
1924 3638 4.069304 ACAAAGCTAATGTGCGGAGTAAA 58.931 39.130 4.40 0.00 38.13 2.01
1930 3644 2.076100 TCAGACAAAGCTAATGTGCGG 58.924 47.619 9.61 3.78 38.13 5.69
1931 3645 3.187227 ACTTCAGACAAAGCTAATGTGCG 59.813 43.478 9.61 1.67 38.13 5.34
1932 3646 4.378874 GGACTTCAGACAAAGCTAATGTGC 60.379 45.833 9.61 2.86 0.00 4.57
1934 3648 4.973168 TGGACTTCAGACAAAGCTAATGT 58.027 39.130 4.85 4.85 0.00 2.71
1936 3650 5.625150 ACTTGGACTTCAGACAAAGCTAAT 58.375 37.500 0.00 0.00 0.00 1.73
1937 3651 5.036117 ACTTGGACTTCAGACAAAGCTAA 57.964 39.130 0.00 0.00 0.00 3.09
1938 3652 4.689612 ACTTGGACTTCAGACAAAGCTA 57.310 40.909 0.00 0.00 0.00 3.32
1942 3656 4.016444 AGCAAACTTGGACTTCAGACAAA 58.984 39.130 0.00 0.00 0.00 2.83
1943 3657 3.620488 AGCAAACTTGGACTTCAGACAA 58.380 40.909 0.00 0.00 0.00 3.18
1944 3658 3.281727 AGCAAACTTGGACTTCAGACA 57.718 42.857 0.00 0.00 0.00 3.41
1945 3659 4.816925 ACTTAGCAAACTTGGACTTCAGAC 59.183 41.667 0.00 0.00 0.00 3.51
1946 3660 5.036117 ACTTAGCAAACTTGGACTTCAGA 57.964 39.130 0.00 0.00 0.00 3.27
1947 3661 5.757850 AACTTAGCAAACTTGGACTTCAG 57.242 39.130 0.00 0.00 0.00 3.02
1948 3662 5.650266 TCAAACTTAGCAAACTTGGACTTCA 59.350 36.000 0.00 0.00 0.00 3.02
1949 3663 5.971792 GTCAAACTTAGCAAACTTGGACTTC 59.028 40.000 0.00 0.00 0.00 3.01
1950 3664 5.163550 GGTCAAACTTAGCAAACTTGGACTT 60.164 40.000 0.00 0.00 0.00 3.01
1951 3665 4.338400 GGTCAAACTTAGCAAACTTGGACT 59.662 41.667 0.00 0.00 0.00 3.85
1952 3666 4.097286 TGGTCAAACTTAGCAAACTTGGAC 59.903 41.667 0.00 0.00 0.00 4.02
1953 3667 4.274147 TGGTCAAACTTAGCAAACTTGGA 58.726 39.130 0.00 0.00 0.00 3.53
1954 3668 4.647424 TGGTCAAACTTAGCAAACTTGG 57.353 40.909 0.00 0.00 0.00 3.61
1955 3669 7.538303 AATTTGGTCAAACTTAGCAAACTTG 57.462 32.000 2.91 0.00 44.37 3.16
1956 3670 9.830975 ATAAATTTGGTCAAACTTAGCAAACTT 57.169 25.926 0.00 1.95 44.37 2.66
2037 3751 9.658799 ACACATTTATTATTAGATCCATCTCGG 57.341 33.333 0.00 0.00 38.32 4.63
2097 3811 5.474532 TCAATCTCATCCAACTTTGACCAAG 59.525 40.000 0.00 0.00 38.64 3.61
2098 3812 5.241506 GTCAATCTCATCCAACTTTGACCAA 59.758 40.000 0.00 0.00 37.86 3.67
2099 3813 4.761739 GTCAATCTCATCCAACTTTGACCA 59.238 41.667 0.00 0.00 37.86 4.02
2100 3814 5.006386 AGTCAATCTCATCCAACTTTGACC 58.994 41.667 9.31 0.00 42.29 4.02
2101 3815 6.205464 TGAAGTCAATCTCATCCAACTTTGAC 59.795 38.462 5.67 5.67 41.88 3.18
2102 3816 6.298361 TGAAGTCAATCTCATCCAACTTTGA 58.702 36.000 0.00 0.00 0.00 2.69
2103 3817 6.429078 TCTGAAGTCAATCTCATCCAACTTTG 59.571 38.462 0.00 0.00 0.00 2.77
2104 3818 6.429385 GTCTGAAGTCAATCTCATCCAACTTT 59.571 38.462 0.00 0.00 0.00 2.66
2105 3819 5.936956 GTCTGAAGTCAATCTCATCCAACTT 59.063 40.000 0.00 0.00 0.00 2.66
2106 3820 5.012458 TGTCTGAAGTCAATCTCATCCAACT 59.988 40.000 0.00 0.00 0.00 3.16
2107 3821 5.240891 TGTCTGAAGTCAATCTCATCCAAC 58.759 41.667 0.00 0.00 0.00 3.77
2108 3822 5.488262 TGTCTGAAGTCAATCTCATCCAA 57.512 39.130 0.00 0.00 0.00 3.53
2109 3823 5.488262 TTGTCTGAAGTCAATCTCATCCA 57.512 39.130 0.00 0.00 0.00 3.41
2110 3824 5.123027 GGTTTGTCTGAAGTCAATCTCATCC 59.877 44.000 0.00 0.00 0.00 3.51
2111 3825 5.936956 AGGTTTGTCTGAAGTCAATCTCATC 59.063 40.000 0.00 0.00 0.00 2.92
2112 3826 5.874093 AGGTTTGTCTGAAGTCAATCTCAT 58.126 37.500 0.00 0.00 0.00 2.90
2113 3827 5.296151 AGGTTTGTCTGAAGTCAATCTCA 57.704 39.130 0.00 0.00 0.00 3.27
2114 3828 7.913674 ATTAGGTTTGTCTGAAGTCAATCTC 57.086 36.000 0.00 0.00 0.00 2.75
2115 3829 9.388506 CATATTAGGTTTGTCTGAAGTCAATCT 57.611 33.333 0.00 0.00 0.00 2.40
2116 3830 8.125448 GCATATTAGGTTTGTCTGAAGTCAATC 58.875 37.037 0.00 0.00 0.00 2.67
2117 3831 7.611467 TGCATATTAGGTTTGTCTGAAGTCAAT 59.389 33.333 0.00 0.00 0.00 2.57
2118 3832 6.939730 TGCATATTAGGTTTGTCTGAAGTCAA 59.060 34.615 0.00 0.00 0.00 3.18
2119 3833 6.472016 TGCATATTAGGTTTGTCTGAAGTCA 58.528 36.000 0.00 0.00 0.00 3.41
2120 3834 6.818644 TCTGCATATTAGGTTTGTCTGAAGTC 59.181 38.462 0.00 0.00 0.00 3.01
2121 3835 6.711277 TCTGCATATTAGGTTTGTCTGAAGT 58.289 36.000 0.00 0.00 0.00 3.01
2122 3836 6.820656 ACTCTGCATATTAGGTTTGTCTGAAG 59.179 38.462 0.00 0.00 0.00 3.02
2123 3837 6.711277 ACTCTGCATATTAGGTTTGTCTGAA 58.289 36.000 0.00 0.00 0.00 3.02
2124 3838 6.299805 ACTCTGCATATTAGGTTTGTCTGA 57.700 37.500 0.00 0.00 0.00 3.27
2125 3839 8.492673 TTTACTCTGCATATTAGGTTTGTCTG 57.507 34.615 0.00 0.00 0.00 3.51
2126 3840 9.515226 TTTTTACTCTGCATATTAGGTTTGTCT 57.485 29.630 0.00 0.00 0.00 3.41
2127 3841 9.774742 CTTTTTACTCTGCATATTAGGTTTGTC 57.225 33.333 0.00 0.00 0.00 3.18
2128 3842 8.739972 CCTTTTTACTCTGCATATTAGGTTTGT 58.260 33.333 0.00 0.00 0.00 2.83
2129 3843 8.956426 TCCTTTTTACTCTGCATATTAGGTTTG 58.044 33.333 0.00 0.00 0.00 2.93
2130 3844 8.957466 GTCCTTTTTACTCTGCATATTAGGTTT 58.043 33.333 0.00 0.00 0.00 3.27
2131 3845 7.556635 GGTCCTTTTTACTCTGCATATTAGGTT 59.443 37.037 0.00 0.00 0.00 3.50
2132 3846 7.054751 GGTCCTTTTTACTCTGCATATTAGGT 58.945 38.462 0.00 0.00 0.00 3.08
2133 3847 6.202954 CGGTCCTTTTTACTCTGCATATTAGG 59.797 42.308 0.00 0.00 0.00 2.69
2134 3848 6.202954 CCGGTCCTTTTTACTCTGCATATTAG 59.797 42.308 0.00 0.00 0.00 1.73
2135 3849 6.053005 CCGGTCCTTTTTACTCTGCATATTA 58.947 40.000 0.00 0.00 0.00 0.98
2136 3850 4.881850 CCGGTCCTTTTTACTCTGCATATT 59.118 41.667 0.00 0.00 0.00 1.28
2137 3851 4.163458 TCCGGTCCTTTTTACTCTGCATAT 59.837 41.667 0.00 0.00 0.00 1.78
2138 3852 3.516300 TCCGGTCCTTTTTACTCTGCATA 59.484 43.478 0.00 0.00 0.00 3.14
2139 3853 2.304761 TCCGGTCCTTTTTACTCTGCAT 59.695 45.455 0.00 0.00 0.00 3.96
2140 3854 1.695242 TCCGGTCCTTTTTACTCTGCA 59.305 47.619 0.00 0.00 0.00 4.41
2141 3855 2.347731 CTCCGGTCCTTTTTACTCTGC 58.652 52.381 0.00 0.00 0.00 4.26
2142 3856 2.354805 CCCTCCGGTCCTTTTTACTCTG 60.355 54.545 0.00 0.00 0.00 3.35
2143 3857 1.907255 CCCTCCGGTCCTTTTTACTCT 59.093 52.381 0.00 0.00 0.00 3.24
2144 3858 1.904537 TCCCTCCGGTCCTTTTTACTC 59.095 52.381 0.00 0.00 0.00 2.59
2150 3864 0.616964 GGTACTCCCTCCGGTCCTTT 60.617 60.000 0.00 0.00 0.00 3.11
2152 3866 1.591280 ATGGTACTCCCTCCGGTCCT 61.591 60.000 0.00 0.00 0.00 3.85
2156 3870 1.152819 TCGATGGTACTCCCTCCGG 60.153 63.158 0.00 0.00 32.25 5.14
2184 4152 8.419076 TTCATTTTCTGGCAAAAACTCTAAAC 57.581 30.769 8.88 0.00 31.35 2.01
2444 4695 7.254218 GGCTTGCTGCAATATCAAATTTAGAAC 60.254 37.037 16.38 0.00 45.15 3.01
2457 4708 1.064537 TCCTCATGGCTTGCTGCAATA 60.065 47.619 16.38 6.08 45.15 1.90
3031 5316 1.497286 GCCAATAATGTACCCCCTCCA 59.503 52.381 0.00 0.00 0.00 3.86
3038 5323 2.092103 TCCACCCAGCCAATAATGTACC 60.092 50.000 0.00 0.00 0.00 3.34
3094 5379 0.183492 TGGAAGCAAGGTGAGCACTT 59.817 50.000 0.16 0.00 0.00 3.16
3121 5406 2.036958 ATGCGGTGCAATAGCTGTTA 57.963 45.000 0.00 0.00 43.62 2.41
3167 5523 6.734104 ATGAGAAACAGCAAACTACAGATC 57.266 37.500 0.00 0.00 0.00 2.75
3200 5556 0.111639 GACTAGCCAACCAACCCCAA 59.888 55.000 0.00 0.00 0.00 4.12
3209 5568 2.501723 TCCTTCTGGATGACTAGCCAAC 59.498 50.000 0.00 0.00 42.83 3.77
3221 5580 5.957168 TGGCAATTATCAATTTCCTTCTGGA 59.043 36.000 2.75 0.00 41.36 3.86
3246 5610 9.065798 TGTCACATTAGAGAATGAAATTTGACA 57.934 29.630 12.99 12.99 44.02 3.58
3290 5654 6.544197 ACACACATGTTATTAAGAACACACCA 59.456 34.615 17.33 0.00 41.93 4.17
3292 5656 8.984764 TCTACACACATGTTATTAAGAACACAC 58.015 33.333 17.33 0.00 41.93 3.82
3293 5657 9.549078 TTCTACACACATGTTATTAAGAACACA 57.451 29.630 17.33 0.00 41.93 3.72
3333 5697 5.648092 GCAAATAACCACTGTCACCTAATCT 59.352 40.000 0.00 0.00 0.00 2.40
3342 5706 5.156355 CAGTTCATGCAAATAACCACTGTC 58.844 41.667 0.00 0.00 0.00 3.51
3389 5753 3.994392 ACTTACTGTACCATTTGAGTGCG 59.006 43.478 0.00 0.00 0.00 5.34
3666 6247 2.608261 GCCCGTATGTTAGCTAGCTGAG 60.608 54.545 27.68 6.61 0.00 3.35
3667 6248 1.340248 GCCCGTATGTTAGCTAGCTGA 59.660 52.381 27.68 17.10 0.00 4.26
3668 6249 1.605712 GGCCCGTATGTTAGCTAGCTG 60.606 57.143 27.68 8.25 0.00 4.24
3669 6250 0.680061 GGCCCGTATGTTAGCTAGCT 59.320 55.000 23.12 23.12 0.00 3.32
3670 6251 0.391597 TGGCCCGTATGTTAGCTAGC 59.608 55.000 6.62 6.62 0.00 3.42
3671 6252 2.353803 GGATGGCCCGTATGTTAGCTAG 60.354 54.545 0.00 0.00 0.00 3.42
3672 6253 1.621814 GGATGGCCCGTATGTTAGCTA 59.378 52.381 0.00 0.00 0.00 3.32
3673 6254 0.396811 GGATGGCCCGTATGTTAGCT 59.603 55.000 0.00 0.00 0.00 3.32
3674 6255 0.605589 GGGATGGCCCGTATGTTAGC 60.606 60.000 0.00 0.00 46.48 3.09
3675 6256 3.625745 GGGATGGCCCGTATGTTAG 57.374 57.895 0.00 0.00 46.48 2.34
3698 6279 0.836400 TGTTTCTTCCTCCGGGCTCT 60.836 55.000 0.00 0.00 0.00 4.09
3722 6304 2.683768 GAGTGAGGGGGACATATGAGT 58.316 52.381 10.38 0.00 0.00 3.41
3753 6349 1.520342 GTGGCTCAGCTCGGCTTAG 60.520 63.158 0.00 3.55 36.40 2.18
3754 6350 2.579201 GTGGCTCAGCTCGGCTTA 59.421 61.111 0.00 0.00 36.40 3.09
3755 6351 4.400961 GGTGGCTCAGCTCGGCTT 62.401 66.667 0.00 0.00 36.40 4.35
3800 6397 1.002773 CCTGGTACTTTTAGCACGGGT 59.997 52.381 0.00 0.00 32.24 5.28
3906 6504 7.592533 CCCGCATGATTTGTCTAAAATCTAATG 59.407 37.037 0.00 8.66 37.50 1.90
3916 6514 1.280710 ACACCCCGCATGATTTGTCTA 59.719 47.619 0.00 0.00 0.00 2.59
3982 6925 2.116383 GAGAAATCTCCCTCGGCGA 58.884 57.895 10.14 10.14 37.02 5.54
4080 7042 2.352421 CGAAAAGAAGGGACTAGCGTCA 60.352 50.000 0.00 0.00 42.05 4.35
4086 7048 2.904434 AGAAGGCGAAAAGAAGGGACTA 59.096 45.455 0.00 0.00 38.49 2.59
4199 7164 2.221169 TGAGCTGTTTGATTGACGCTT 58.779 42.857 0.00 0.00 30.91 4.68
4309 7276 7.384524 TGGAATGAATTCAGATAGATGGAGT 57.615 36.000 14.54 0.00 38.53 3.85
4310 7277 7.174599 GGTTGGAATGAATTCAGATAGATGGAG 59.825 40.741 14.54 0.00 38.53 3.86
4311 7278 7.000472 GGTTGGAATGAATTCAGATAGATGGA 59.000 38.462 14.54 0.00 38.53 3.41
4312 7279 7.002879 AGGTTGGAATGAATTCAGATAGATGG 58.997 38.462 14.54 0.00 38.53 3.51
4313 7280 7.718314 TGAGGTTGGAATGAATTCAGATAGATG 59.282 37.037 14.54 0.00 38.53 2.90
4314 7281 7.809238 TGAGGTTGGAATGAATTCAGATAGAT 58.191 34.615 14.54 0.00 38.53 1.98
4315 7282 7.092712 ACTGAGGTTGGAATGAATTCAGATAGA 60.093 37.037 14.54 0.00 38.53 1.98
4316 7283 7.052873 ACTGAGGTTGGAATGAATTCAGATAG 58.947 38.462 14.54 3.43 38.53 2.08
4317 7284 6.962182 ACTGAGGTTGGAATGAATTCAGATA 58.038 36.000 14.54 0.00 38.53 1.98
4318 7285 5.824421 ACTGAGGTTGGAATGAATTCAGAT 58.176 37.500 14.54 5.26 38.53 2.90
4319 7286 5.246981 ACTGAGGTTGGAATGAATTCAGA 57.753 39.130 14.54 0.00 38.53 3.27
4320 7287 7.636150 AATACTGAGGTTGGAATGAATTCAG 57.364 36.000 14.54 0.00 38.53 3.02
4321 7288 9.123902 CATAATACTGAGGTTGGAATGAATTCA 57.876 33.333 11.26 11.26 38.53 2.57
4322 7289 8.571336 CCATAATACTGAGGTTGGAATGAATTC 58.429 37.037 0.00 0.00 36.08 2.17
4323 7290 8.061304 ACCATAATACTGAGGTTGGAATGAATT 58.939 33.333 0.00 0.00 0.00 2.17
4324 7291 7.586349 ACCATAATACTGAGGTTGGAATGAAT 58.414 34.615 0.00 0.00 0.00 2.57
4325 7292 6.969043 ACCATAATACTGAGGTTGGAATGAA 58.031 36.000 0.00 0.00 0.00 2.57
4326 7293 6.575244 ACCATAATACTGAGGTTGGAATGA 57.425 37.500 0.00 0.00 0.00 2.57
4327 7294 7.645058 AAACCATAATACTGAGGTTGGAATG 57.355 36.000 0.00 0.00 43.17 2.67
4328 7295 9.408648 CTTAAACCATAATACTGAGGTTGGAAT 57.591 33.333 0.00 0.00 43.17 3.01
4329 7296 7.832187 CCTTAAACCATAATACTGAGGTTGGAA 59.168 37.037 0.00 0.00 43.17 3.53
4330 7297 7.037153 ACCTTAAACCATAATACTGAGGTTGGA 60.037 37.037 0.00 0.00 43.17 3.53
4331 7298 7.116736 ACCTTAAACCATAATACTGAGGTTGG 58.883 38.462 0.00 0.00 43.17 3.77
4332 7299 8.575649 AACCTTAAACCATAATACTGAGGTTG 57.424 34.615 3.38 0.00 43.17 3.77
4333 7300 9.596308 AAAACCTTAAACCATAATACTGAGGTT 57.404 29.630 0.00 0.00 45.73 3.50
4353 7345 5.067805 GTGGAGAGTTGAAACATCAAAACCT 59.932 40.000 0.00 0.00 0.00 3.50
4459 7451 4.038282 TGTTTTTCAATCTCTGCTGTGCAT 59.962 37.500 0.00 0.00 38.13 3.96
4530 7522 9.035607 CACGTAGAAGAATTATTAGACAATGCT 57.964 33.333 0.00 0.00 0.00 3.79
4533 7525 9.530633 GGACACGTAGAAGAATTATTAGACAAT 57.469 33.333 0.00 0.00 0.00 2.71
4535 7527 8.289939 AGGACACGTAGAAGAATTATTAGACA 57.710 34.615 0.00 0.00 0.00 3.41
4642 7660 7.867403 ACTCACCTGTTTACAAAATGCAAATAG 59.133 33.333 0.00 0.00 0.00 1.73
4722 7740 2.894257 ATCACCAGCAACCTCCGCA 61.894 57.895 0.00 0.00 0.00 5.69
4785 7803 1.071542 TGGACGCCAGAATTTGTGAGA 59.928 47.619 0.00 0.00 0.00 3.27
4900 7918 4.711846 ACATCTAAGATGACACTACCAGCA 59.288 41.667 0.00 0.00 0.00 4.41
4918 7936 0.745845 GCACTGGCCGATGAACATCT 60.746 55.000 10.16 0.00 35.72 2.90
4976 7994 9.883142 AAACTATATTTCACTCCAAAGAGAGAG 57.117 33.333 0.00 0.00 43.39 3.20
5029 8049 4.870123 ACATTTTGCATGCCAAGACTAA 57.130 36.364 16.68 0.00 34.34 2.24
5030 8050 4.870123 AACATTTTGCATGCCAAGACTA 57.130 36.364 16.68 0.00 34.34 2.59
5103 8188 0.391927 TGGGGCGGAGTAACATTTCG 60.392 55.000 0.00 0.00 0.00 3.46
5104 8189 1.828979 TTGGGGCGGAGTAACATTTC 58.171 50.000 0.00 0.00 0.00 2.17
5106 8191 1.409661 GGATTGGGGCGGAGTAACATT 60.410 52.381 0.00 0.00 0.00 2.71
5107 8192 0.182775 GGATTGGGGCGGAGTAACAT 59.817 55.000 0.00 0.00 0.00 2.71
5108 8193 0.912487 AGGATTGGGGCGGAGTAACA 60.912 55.000 0.00 0.00 0.00 2.41
5109 8194 0.255033 AAGGATTGGGGCGGAGTAAC 59.745 55.000 0.00 0.00 0.00 2.50
5110 8195 0.996583 AAAGGATTGGGGCGGAGTAA 59.003 50.000 0.00 0.00 0.00 2.24
5111 8196 0.254747 CAAAGGATTGGGGCGGAGTA 59.745 55.000 0.00 0.00 32.69 2.59
5112 8197 1.000896 CAAAGGATTGGGGCGGAGT 60.001 57.895 0.00 0.00 32.69 3.85
5114 8199 1.304052 CACAAAGGATTGGGGCGGA 60.304 57.895 0.00 0.00 41.01 5.54
5116 8201 0.678950 AAACACAAAGGATTGGGGCG 59.321 50.000 0.00 0.00 44.59 6.13
5117 8202 1.416030 ACAAACACAAAGGATTGGGGC 59.584 47.619 0.00 0.00 44.59 5.80
5118 8203 3.836365 AACAAACACAAAGGATTGGGG 57.164 42.857 0.00 0.00 44.59 4.96
5119 8204 5.179182 GCAATAACAAACACAAAGGATTGGG 59.821 40.000 0.00 0.00 45.82 4.12
5123 8209 5.070313 ACCAGCAATAACAAACACAAAGGAT 59.930 36.000 0.00 0.00 0.00 3.24
5125 8211 4.692228 ACCAGCAATAACAAACACAAAGG 58.308 39.130 0.00 0.00 0.00 3.11
5152 8238 9.525826 AAGAGAGGTGAAAATCATAGTGAAAAT 57.474 29.630 0.00 0.00 0.00 1.82
5153 8239 8.924511 AAGAGAGGTGAAAATCATAGTGAAAA 57.075 30.769 0.00 0.00 0.00 2.29
5154 8240 7.607991 GGAAGAGAGGTGAAAATCATAGTGAAA 59.392 37.037 0.00 0.00 0.00 2.69
5155 8241 7.106239 GGAAGAGAGGTGAAAATCATAGTGAA 58.894 38.462 0.00 0.00 0.00 3.18
5156 8242 6.628175 CGGAAGAGAGGTGAAAATCATAGTGA 60.628 42.308 0.00 0.00 0.00 3.41
5157 8243 5.521735 CGGAAGAGAGGTGAAAATCATAGTG 59.478 44.000 0.00 0.00 0.00 2.74
5158 8244 5.187967 ACGGAAGAGAGGTGAAAATCATAGT 59.812 40.000 0.00 0.00 0.00 2.12
5159 8245 5.665459 ACGGAAGAGAGGTGAAAATCATAG 58.335 41.667 0.00 0.00 0.00 2.23
5160 8246 5.677319 ACGGAAGAGAGGTGAAAATCATA 57.323 39.130 0.00 0.00 0.00 2.15
5161 8247 4.559862 ACGGAAGAGAGGTGAAAATCAT 57.440 40.909 0.00 0.00 0.00 2.45
5162 8248 4.351874 AACGGAAGAGAGGTGAAAATCA 57.648 40.909 0.00 0.00 0.00 2.57
5163 8249 5.690997 AAAACGGAAGAGAGGTGAAAATC 57.309 39.130 0.00 0.00 0.00 2.17
5191 8277 3.368571 AGAAGCAAAGCGGCTGGC 61.369 61.111 16.48 16.48 45.07 4.85
5192 8278 1.310933 ATCAGAAGCAAAGCGGCTGG 61.311 55.000 1.81 0.00 45.07 4.85
5193 8279 0.179171 CATCAGAAGCAAAGCGGCTG 60.179 55.000 1.81 0.00 45.07 4.85
5195 8281 1.138247 CCATCAGAAGCAAAGCGGC 59.862 57.895 0.00 0.00 0.00 6.53
5196 8282 1.660560 CCCCATCAGAAGCAAAGCGG 61.661 60.000 0.00 0.00 0.00 5.52
5197 8283 0.677731 TCCCCATCAGAAGCAAAGCG 60.678 55.000 0.00 0.00 0.00 4.68
5198 8284 1.680207 GATCCCCATCAGAAGCAAAGC 59.320 52.381 0.00 0.00 0.00 3.51
5199 8285 1.945394 CGATCCCCATCAGAAGCAAAG 59.055 52.381 0.00 0.00 0.00 2.77
5240 8326 1.112113 TGAATACGAGGGAGAGGCAC 58.888 55.000 0.00 0.00 0.00 5.01
5241 8327 2.088104 ATGAATACGAGGGAGAGGCA 57.912 50.000 0.00 0.00 0.00 4.75
5256 8342 5.527951 TGTTACAGAACGCTTTGGTAATGAA 59.472 36.000 0.00 0.00 38.51 2.57
5261 8347 3.998341 GGATGTTACAGAACGCTTTGGTA 59.002 43.478 0.00 0.00 38.51 3.25
5265 8351 3.074412 CCAGGATGTTACAGAACGCTTT 58.926 45.455 0.00 0.00 38.51 3.51
5269 8355 4.451629 ACTACCAGGATGTTACAGAACG 57.548 45.455 0.00 0.00 38.51 3.95
5284 8370 9.969001 GGCAAAATATATAGGGAATTACTACCA 57.031 33.333 0.00 0.00 0.00 3.25
5303 8389 9.835389 ATGCACAAACAATATAATAGGCAAAAT 57.165 25.926 0.00 0.00 0.00 1.82
5417 8511 0.603975 GGTGAGTCTTGGTGCAGACC 60.604 60.000 0.52 0.00 43.89 3.85
5418 8512 0.394565 AGGTGAGTCTTGGTGCAGAC 59.605 55.000 0.00 0.00 43.26 3.51
5432 8526 0.038166 GAATGTGGGCTTGGAGGTGA 59.962 55.000 0.00 0.00 0.00 4.02
5457 8551 4.864704 TTTGGTAGCTCCCAAATTTCAC 57.135 40.909 18.75 0.00 46.80 3.18
5495 8590 5.140454 TGAGTGATATCTAGGCTTGTGCTA 58.860 41.667 3.98 0.00 39.59 3.49
5505 8600 9.944663 GAGTTTGAACTACTGAGTGATATCTAG 57.055 37.037 3.98 0.00 39.88 2.43
5518 8613 5.607477 TCATTTCGGTGAGTTTGAACTACT 58.393 37.500 0.00 0.00 39.88 2.57
5535 8630 8.626526 TGGGACTTTGTTTAACTTACTCATTTC 58.373 33.333 0.00 0.00 0.00 2.17
5558 8670 8.355169 CCACAACAAGATATTCAATCTATTGGG 58.645 37.037 3.00 9.98 38.30 4.12
5578 8690 9.353999 CTTTCTATAAAATAACAAGGCCACAAC 57.646 33.333 5.01 0.00 0.00 3.32
5622 8734 3.430895 GCCTCAAACGACTACGAATCAAA 59.569 43.478 0.00 0.00 42.66 2.69
5625 8737 2.599082 CAGCCTCAAACGACTACGAATC 59.401 50.000 0.00 0.00 42.66 2.52
5626 8738 2.230508 TCAGCCTCAAACGACTACGAAT 59.769 45.455 0.00 0.00 42.66 3.34
5627 8739 1.610038 TCAGCCTCAAACGACTACGAA 59.390 47.619 0.00 0.00 42.66 3.85
5629 8741 1.335597 TGTCAGCCTCAAACGACTACG 60.336 52.381 0.00 0.00 45.75 3.51
5630 8742 2.059541 GTGTCAGCCTCAAACGACTAC 58.940 52.381 0.00 0.00 0.00 2.73
5631 8743 1.335597 CGTGTCAGCCTCAAACGACTA 60.336 52.381 0.00 0.00 36.38 2.59
5656 8769 2.517650 GGCTATAGCGCCCTCATATC 57.482 55.000 18.30 0.00 44.41 1.63
5667 8780 8.319143 TGTTTTATTCTTTATCCGGCTATAGC 57.681 34.615 16.78 16.78 41.14 2.97
5717 8830 0.980423 CTTATGGGAGAGGGCTAGCC 59.020 60.000 26.55 26.55 0.00 3.93
5758 8871 1.952621 TATAGCAGGGGGTAGATGCC 58.047 55.000 0.00 0.00 40.89 4.40
5759 8872 4.576330 ATTTATAGCAGGGGGTAGATGC 57.424 45.455 0.00 0.00 40.29 3.91
5765 8878 4.536489 GGATGACTATTTATAGCAGGGGGT 59.464 45.833 0.00 0.00 33.68 4.95
5769 8884 5.104735 GGGAGGGATGACTATTTATAGCAGG 60.105 48.000 0.00 0.00 33.68 4.85
5783 8898 4.788075 TCTAAAATTGACAGGGAGGGATGA 59.212 41.667 0.00 0.00 0.00 2.92
5786 8901 3.913799 TGTCTAAAATTGACAGGGAGGGA 59.086 43.478 0.00 0.00 39.23 4.20
5792 8907 6.743575 CCTAGGTTGTCTAAAATTGACAGG 57.256 41.667 0.00 0.00 43.98 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.