Multiple sequence alignment - TraesCS4A01G112500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G112500 chr4A 100.000 3278 0 0 1 3278 137163430 137166707 0.000000e+00 6054.0
1 TraesCS4A01G112500 chr4A 81.712 257 38 8 358 607 11698608 11698862 4.290000e-49 206.0
2 TraesCS4A01G112500 chr4D 92.003 2701 124 23 635 3278 335899355 335896690 0.000000e+00 3707.0
3 TraesCS4A01G112500 chr4B 95.796 1903 55 13 590 2472 413876362 413874465 0.000000e+00 3048.0
4 TraesCS4A01G112500 chr4B 95.184 353 15 2 1 352 661204548 661204899 1.030000e-154 556.0
5 TraesCS4A01G112500 chr4B 83.669 496 28 14 2498 2957 413874405 413873927 5.060000e-113 418.0
6 TraesCS4A01G112500 chr4B 84.615 208 26 5 364 566 462560927 462561133 5.550000e-48 202.0
7 TraesCS4A01G112500 chr4B 83.333 222 29 7 354 568 586244104 586244324 7.170000e-47 198.0
8 TraesCS4A01G112500 chr5A 96.307 352 13 0 1 352 555177274 555176923 2.190000e-161 579.0
9 TraesCS4A01G112500 chr7A 96.023 352 14 0 1 352 533059439 533059088 1.020000e-159 573.0
10 TraesCS4A01G112500 chr7A 80.077 261 43 8 363 616 543430834 543430576 5.590000e-43 185.0
11 TraesCS4A01G112500 chr5B 95.467 353 14 2 1 352 337155999 337155648 2.210000e-156 562.0
12 TraesCS4A01G112500 chr7B 95.184 353 15 2 1 352 744908022 744907671 1.030000e-154 556.0
13 TraesCS4A01G112500 chr7B 78.082 146 26 6 1407 1549 92063163 92063021 1.620000e-13 87.9
14 TraesCS4A01G112500 chr6B 95.184 353 15 2 1 352 527577466 527577817 1.030000e-154 556.0
15 TraesCS4A01G112500 chr5D 95.170 352 17 0 1 352 352447259 352447610 1.030000e-154 556.0
16 TraesCS4A01G112500 chr2B 95.184 353 15 2 1 352 359625826 359625475 1.030000e-154 556.0
17 TraesCS4A01G112500 chr2B 83.886 211 28 5 363 568 389457188 389456979 2.580000e-46 196.0
18 TraesCS4A01G112500 chr1B 95.211 355 12 4 1 352 667101851 667101499 1.030000e-154 556.0
19 TraesCS4A01G112500 chr1B 80.080 251 40 9 363 606 532152208 532151961 9.350000e-41 178.0
20 TraesCS4A01G112500 chr3B 83.491 212 29 5 360 566 788206900 788207110 3.340000e-45 193.0
21 TraesCS4A01G112500 chr1A 83.178 214 30 5 360 568 537536480 537536692 1.200000e-44 191.0
22 TraesCS4A01G112500 chr2A 79.842 253 38 11 363 607 448295556 448295309 4.350000e-39 172.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G112500 chr4A 137163430 137166707 3277 False 6054 6054 100.0000 1 3278 1 chr4A.!!$F2 3277
1 TraesCS4A01G112500 chr4D 335896690 335899355 2665 True 3707 3707 92.0030 635 3278 1 chr4D.!!$R1 2643
2 TraesCS4A01G112500 chr4B 413873927 413876362 2435 True 1733 3048 89.7325 590 2957 2 chr4B.!!$R1 2367

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
20 21 0.035739 GAACAACCTCCACCGGCTTA 59.964 55.0 0.00 0.0 0.00 3.09 F
55 56 0.035881 GGCATAGCAGCAGAGGCATA 59.964 55.0 6.34 0.0 44.61 3.14 F
62 63 0.179062 CAGCAGAGGCATACCAGACC 60.179 60.0 0.00 0.0 44.61 3.85 F
396 397 0.179250 CTATGAACGCACACGCACAC 60.179 55.0 0.00 0.0 45.53 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1696 1710 1.517257 CATCCGAGTGCGTCTGACC 60.517 63.158 1.55 0.00 35.23 4.02 R
1710 1724 1.825474 TCGTCCTTCTCCTTGACATCC 59.175 52.381 0.00 0.00 0.00 3.51 R
1791 1805 4.329545 TCGGGGTTGGAGCTGCAC 62.330 66.667 7.72 3.17 0.00 4.57 R
2285 2299 0.179097 AAAGAGCTCGGCGATCTTCC 60.179 55.000 21.88 8.47 46.98 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.671963 GGAACAACCTCCACCGGC 60.672 66.667 0.00 0.00 35.36 6.13
18 19 2.430367 GAACAACCTCCACCGGCT 59.570 61.111 0.00 0.00 0.00 5.52
19 20 1.228154 GAACAACCTCCACCGGCTT 60.228 57.895 0.00 0.00 0.00 4.35
20 21 0.035739 GAACAACCTCCACCGGCTTA 59.964 55.000 0.00 0.00 0.00 3.09
21 22 0.036306 AACAACCTCCACCGGCTTAG 59.964 55.000 0.00 0.00 0.00 2.18
22 23 1.078426 CAACCTCCACCGGCTTAGG 60.078 63.158 13.55 13.55 35.14 2.69
29 30 3.306379 ACCGGCTTAGGTGGTAGC 58.694 61.111 0.00 0.00 44.07 3.58
30 31 1.611261 ACCGGCTTAGGTGGTAGCA 60.611 57.895 0.00 0.00 44.07 3.49
31 32 1.144057 CCGGCTTAGGTGGTAGCAG 59.856 63.158 0.00 0.00 39.15 4.24
32 33 1.327690 CCGGCTTAGGTGGTAGCAGA 61.328 60.000 0.00 0.00 39.15 4.26
33 34 0.179108 CGGCTTAGGTGGTAGCAGAC 60.179 60.000 0.00 0.00 39.15 3.51
43 44 3.297391 GTAGCAGACCAGGCATAGC 57.703 57.895 0.00 0.00 0.00 2.97
44 45 0.465705 GTAGCAGACCAGGCATAGCA 59.534 55.000 0.00 0.00 0.00 3.49
45 46 0.755079 TAGCAGACCAGGCATAGCAG 59.245 55.000 0.00 0.00 0.00 4.24
46 47 2.185494 GCAGACCAGGCATAGCAGC 61.185 63.158 0.00 0.00 0.00 5.25
47 48 1.222661 CAGACCAGGCATAGCAGCA 59.777 57.895 0.00 0.00 35.83 4.41
48 49 0.814410 CAGACCAGGCATAGCAGCAG 60.814 60.000 0.00 0.00 35.83 4.24
49 50 0.979709 AGACCAGGCATAGCAGCAGA 60.980 55.000 0.00 0.00 35.83 4.26
50 51 0.532417 GACCAGGCATAGCAGCAGAG 60.532 60.000 0.00 0.00 35.83 3.35
51 52 1.227883 CCAGGCATAGCAGCAGAGG 60.228 63.158 0.00 0.00 35.83 3.69
52 53 1.892862 CAGGCATAGCAGCAGAGGC 60.893 63.158 0.00 0.00 41.61 4.70
53 54 2.191375 GGCATAGCAGCAGAGGCA 59.809 61.111 6.34 0.00 44.61 4.75
54 55 1.228184 GGCATAGCAGCAGAGGCAT 60.228 57.895 6.34 0.00 44.61 4.40
55 56 0.035881 GGCATAGCAGCAGAGGCATA 59.964 55.000 6.34 0.00 44.61 3.14
56 57 1.155042 GCATAGCAGCAGAGGCATAC 58.845 55.000 0.00 0.00 44.61 2.39
57 58 1.805869 CATAGCAGCAGAGGCATACC 58.194 55.000 0.00 0.00 44.61 2.73
58 59 1.071228 CATAGCAGCAGAGGCATACCA 59.929 52.381 0.00 0.00 44.61 3.25
59 60 0.755079 TAGCAGCAGAGGCATACCAG 59.245 55.000 0.00 0.00 44.61 4.00
60 61 0.979709 AGCAGCAGAGGCATACCAGA 60.980 55.000 0.00 0.00 44.61 3.86
61 62 0.813210 GCAGCAGAGGCATACCAGAC 60.813 60.000 0.00 0.00 44.61 3.51
62 63 0.179062 CAGCAGAGGCATACCAGACC 60.179 60.000 0.00 0.00 44.61 3.85
63 64 1.147153 GCAGAGGCATACCAGACCC 59.853 63.158 0.00 0.00 40.72 4.46
64 65 1.832912 CAGAGGCATACCAGACCCC 59.167 63.158 0.00 0.00 39.06 4.95
65 66 1.384643 AGAGGCATACCAGACCCCC 60.385 63.158 0.00 0.00 39.06 5.40
66 67 1.384643 GAGGCATACCAGACCCCCT 60.385 63.158 0.00 0.00 39.06 4.79
67 68 1.694169 AGGCATACCAGACCCCCTG 60.694 63.158 0.00 0.00 42.55 4.45
68 69 2.001269 GGCATACCAGACCCCCTGT 61.001 63.158 0.00 0.00 41.33 4.00
69 70 1.527370 GCATACCAGACCCCCTGTC 59.473 63.158 0.00 0.00 44.82 3.51
70 71 1.984288 GCATACCAGACCCCCTGTCC 61.984 65.000 0.00 0.00 45.68 4.02
71 72 1.382695 ATACCAGACCCCCTGTCCG 60.383 63.158 0.00 0.00 45.68 4.79
72 73 2.891307 ATACCAGACCCCCTGTCCGG 62.891 65.000 0.00 0.00 45.60 5.14
101 102 3.765491 ATGGGCCCATGAAGCTCT 58.235 55.556 37.06 11.01 35.03 4.09
102 103 1.229359 ATGGGCCCATGAAGCTCTG 59.771 57.895 37.06 0.00 35.03 3.35
103 104 2.832201 GGGCCCATGAAGCTCTGC 60.832 66.667 19.95 0.00 0.00 4.26
104 105 2.832201 GGCCCATGAAGCTCTGCC 60.832 66.667 0.00 0.00 0.00 4.85
105 106 3.207669 GCCCATGAAGCTCTGCCG 61.208 66.667 0.00 0.00 0.00 5.69
106 107 3.207669 CCCATGAAGCTCTGCCGC 61.208 66.667 0.00 0.00 0.00 6.53
107 108 3.207669 CCATGAAGCTCTGCCGCC 61.208 66.667 0.00 0.00 0.00 6.13
108 109 3.570638 CATGAAGCTCTGCCGCCG 61.571 66.667 0.00 0.00 0.00 6.46
109 110 4.087892 ATGAAGCTCTGCCGCCGT 62.088 61.111 0.00 0.00 0.00 5.68
155 156 4.180946 CGTCCCTGTCGCGAGGAG 62.181 72.222 10.24 8.77 34.69 3.69
156 157 4.500116 GTCCCTGTCGCGAGGAGC 62.500 72.222 10.24 4.48 43.95 4.70
157 158 4.742649 TCCCTGTCGCGAGGAGCT 62.743 66.667 10.24 0.00 45.59 4.09
158 159 4.200283 CCCTGTCGCGAGGAGCTC 62.200 72.222 10.24 4.71 45.59 4.09
159 160 3.443925 CCTGTCGCGAGGAGCTCA 61.444 66.667 17.19 0.95 45.59 4.26
160 161 2.202544 CTGTCGCGAGGAGCTCAC 60.203 66.667 17.19 8.05 45.59 3.51
161 162 3.691744 CTGTCGCGAGGAGCTCACC 62.692 68.421 17.19 5.26 45.59 4.02
162 163 4.838486 GTCGCGAGGAGCTCACCG 62.838 72.222 17.19 18.13 45.59 4.94
165 166 3.760035 GCGAGGAGCTCACCGGAA 61.760 66.667 22.54 0.00 44.04 4.30
166 167 2.182030 CGAGGAGCTCACCGGAAC 59.818 66.667 17.19 0.00 34.73 3.62
167 168 2.579738 GAGGAGCTCACCGGAACC 59.420 66.667 17.19 1.66 34.73 3.62
168 169 2.203788 AGGAGCTCACCGGAACCA 60.204 61.111 17.19 0.00 34.73 3.67
169 170 2.047179 GGAGCTCACCGGAACCAC 60.047 66.667 17.19 0.00 0.00 4.16
170 171 2.047179 GAGCTCACCGGAACCACC 60.047 66.667 9.46 0.00 0.00 4.61
180 181 2.625375 GGAACCACCGGAGAACAAC 58.375 57.895 9.46 0.00 0.00 3.32
181 182 0.887836 GGAACCACCGGAGAACAACC 60.888 60.000 9.46 0.00 0.00 3.77
182 183 0.887836 GAACCACCGGAGAACAACCC 60.888 60.000 9.46 0.00 0.00 4.11
183 184 1.637724 AACCACCGGAGAACAACCCA 61.638 55.000 9.46 0.00 0.00 4.51
184 185 1.599797 CCACCGGAGAACAACCCAC 60.600 63.158 9.46 0.00 0.00 4.61
185 186 1.450211 CACCGGAGAACAACCCACT 59.550 57.895 9.46 0.00 0.00 4.00
186 187 0.884704 CACCGGAGAACAACCCACTG 60.885 60.000 9.46 0.00 0.00 3.66
187 188 1.966451 CCGGAGAACAACCCACTGC 60.966 63.158 0.00 0.00 0.00 4.40
188 189 2.317609 CGGAGAACAACCCACTGCG 61.318 63.158 0.00 0.00 38.81 5.18
189 190 1.966451 GGAGAACAACCCACTGCGG 60.966 63.158 0.00 0.00 0.00 5.69
190 191 2.594592 AGAACAACCCACTGCGGC 60.595 61.111 0.00 0.00 0.00 6.53
191 192 3.670377 GAACAACCCACTGCGGCC 61.670 66.667 0.00 0.00 0.00 6.13
192 193 4.514585 AACAACCCACTGCGGCCA 62.515 61.111 2.24 0.00 0.00 5.36
219 220 3.480133 CCCACCCCGACCCAGATC 61.480 72.222 0.00 0.00 0.00 2.75
220 221 3.849951 CCACCCCGACCCAGATCG 61.850 72.222 0.00 0.00 41.89 3.69
243 244 2.659800 CGTAGGGCCTAGATCTGGG 58.340 63.158 20.42 20.42 0.00 4.45
249 250 3.155750 CCTAGATCTGGGCCAGCC 58.844 66.667 29.02 21.18 0.00 4.85
250 251 2.739784 CTAGATCTGGGCCAGCCG 59.260 66.667 29.02 6.82 36.85 5.52
251 252 2.844362 TAGATCTGGGCCAGCCGG 60.844 66.667 29.02 6.39 36.85 6.13
359 360 4.201679 CGCCGGCCGACTCACATA 62.202 66.667 30.73 0.00 40.02 2.29
360 361 2.585247 GCCGGCCGACTCACATAC 60.585 66.667 30.73 0.00 0.00 2.39
361 362 3.077519 GCCGGCCGACTCACATACT 62.078 63.158 30.73 0.00 0.00 2.12
362 363 1.065928 CCGGCCGACTCACATACTC 59.934 63.158 30.73 0.00 0.00 2.59
363 364 1.298413 CGGCCGACTCACATACTCG 60.298 63.158 24.07 0.00 0.00 4.18
364 365 1.589196 GGCCGACTCACATACTCGC 60.589 63.158 0.00 0.00 0.00 5.03
365 366 1.138883 GCCGACTCACATACTCGCA 59.861 57.895 0.00 0.00 0.00 5.10
366 367 0.249073 GCCGACTCACATACTCGCAT 60.249 55.000 0.00 0.00 0.00 4.73
367 368 1.001706 GCCGACTCACATACTCGCATA 60.002 52.381 0.00 0.00 0.00 3.14
368 369 2.651701 CCGACTCACATACTCGCATAC 58.348 52.381 0.00 0.00 0.00 2.39
369 370 2.032924 CCGACTCACATACTCGCATACA 59.967 50.000 0.00 0.00 0.00 2.29
370 371 3.036633 CGACTCACATACTCGCATACAC 58.963 50.000 0.00 0.00 0.00 2.90
371 372 3.242772 CGACTCACATACTCGCATACACT 60.243 47.826 0.00 0.00 0.00 3.55
372 373 4.025145 CGACTCACATACTCGCATACACTA 60.025 45.833 0.00 0.00 0.00 2.74
373 374 5.503520 CGACTCACATACTCGCATACACTAA 60.504 44.000 0.00 0.00 0.00 2.24
374 375 5.579718 ACTCACATACTCGCATACACTAAC 58.420 41.667 0.00 0.00 0.00 2.34
375 376 4.928601 TCACATACTCGCATACACTAACC 58.071 43.478 0.00 0.00 0.00 2.85
376 377 4.049186 CACATACTCGCATACACTAACCC 58.951 47.826 0.00 0.00 0.00 4.11
377 378 3.069158 ACATACTCGCATACACTAACCCC 59.931 47.826 0.00 0.00 0.00 4.95
378 379 1.861982 ACTCGCATACACTAACCCCT 58.138 50.000 0.00 0.00 0.00 4.79
379 380 3.022557 ACTCGCATACACTAACCCCTA 57.977 47.619 0.00 0.00 0.00 3.53
380 381 3.573695 ACTCGCATACACTAACCCCTAT 58.426 45.455 0.00 0.00 0.00 2.57
381 382 3.321111 ACTCGCATACACTAACCCCTATG 59.679 47.826 0.00 0.00 0.00 2.23
382 383 3.568443 TCGCATACACTAACCCCTATGA 58.432 45.455 0.00 0.00 0.00 2.15
383 384 3.962063 TCGCATACACTAACCCCTATGAA 59.038 43.478 0.00 0.00 0.00 2.57
384 385 4.056050 CGCATACACTAACCCCTATGAAC 58.944 47.826 0.00 0.00 0.00 3.18
385 386 4.056050 GCATACACTAACCCCTATGAACG 58.944 47.826 0.00 0.00 0.00 3.95
386 387 2.685850 ACACTAACCCCTATGAACGC 57.314 50.000 0.00 0.00 0.00 4.84
387 388 1.903860 ACACTAACCCCTATGAACGCA 59.096 47.619 0.00 0.00 0.00 5.24
388 389 2.277084 CACTAACCCCTATGAACGCAC 58.723 52.381 0.00 0.00 0.00 5.34
389 390 1.903860 ACTAACCCCTATGAACGCACA 59.096 47.619 0.00 0.00 0.00 4.57
390 391 2.277084 CTAACCCCTATGAACGCACAC 58.723 52.381 0.00 0.00 0.00 3.82
392 393 2.461110 CCCCTATGAACGCACACGC 61.461 63.158 0.00 0.00 45.53 5.34
393 394 1.739929 CCCTATGAACGCACACGCA 60.740 57.895 0.00 0.00 45.53 5.24
394 395 1.419922 CCTATGAACGCACACGCAC 59.580 57.895 0.00 0.00 45.53 5.34
395 396 1.288419 CCTATGAACGCACACGCACA 61.288 55.000 0.00 0.00 45.53 4.57
396 397 0.179250 CTATGAACGCACACGCACAC 60.179 55.000 0.00 0.00 45.53 3.82
397 398 1.561717 TATGAACGCACACGCACACC 61.562 55.000 0.00 0.00 45.53 4.16
398 399 4.307908 GAACGCACACGCACACCC 62.308 66.667 0.00 0.00 45.53 4.61
399 400 4.849310 AACGCACACGCACACCCT 62.849 61.111 0.00 0.00 45.53 4.34
400 401 3.448533 AACGCACACGCACACCCTA 62.449 57.895 0.00 0.00 45.53 3.53
401 402 3.411351 CGCACACGCACACCCTAC 61.411 66.667 0.00 0.00 38.40 3.18
402 403 3.047877 GCACACGCACACCCTACC 61.048 66.667 0.00 0.00 38.36 3.18
403 404 2.358247 CACACGCACACCCTACCC 60.358 66.667 0.00 0.00 0.00 3.69
404 405 3.633116 ACACGCACACCCTACCCC 61.633 66.667 0.00 0.00 0.00 4.95
405 406 3.319198 CACGCACACCCTACCCCT 61.319 66.667 0.00 0.00 0.00 4.79
406 407 1.985662 CACGCACACCCTACCCCTA 60.986 63.158 0.00 0.00 0.00 3.53
407 408 1.002533 ACGCACACCCTACCCCTAT 59.997 57.895 0.00 0.00 0.00 2.57
408 409 1.335132 ACGCACACCCTACCCCTATG 61.335 60.000 0.00 0.00 0.00 2.23
409 410 1.046472 CGCACACCCTACCCCTATGA 61.046 60.000 0.00 0.00 0.00 2.15
410 411 0.759346 GCACACCCTACCCCTATGAG 59.241 60.000 0.00 0.00 0.00 2.90
411 412 0.759346 CACACCCTACCCCTATGAGC 59.241 60.000 0.00 0.00 0.00 4.26
412 413 0.341961 ACACCCTACCCCTATGAGCA 59.658 55.000 0.00 0.00 0.00 4.26
413 414 1.061346 ACACCCTACCCCTATGAGCAT 60.061 52.381 0.00 0.00 0.00 3.79
414 415 1.625818 CACCCTACCCCTATGAGCATC 59.374 57.143 0.00 0.00 0.00 3.91
415 416 1.509961 ACCCTACCCCTATGAGCATCT 59.490 52.381 0.00 0.00 34.92 2.90
416 417 2.089925 ACCCTACCCCTATGAGCATCTT 60.090 50.000 0.00 0.00 34.92 2.40
417 418 2.569404 CCCTACCCCTATGAGCATCTTC 59.431 54.545 0.00 0.00 34.92 2.87
418 419 2.232452 CCTACCCCTATGAGCATCTTCG 59.768 54.545 0.00 0.00 34.92 3.79
419 420 2.088104 ACCCCTATGAGCATCTTCGA 57.912 50.000 0.00 0.00 34.92 3.71
420 421 1.967066 ACCCCTATGAGCATCTTCGAG 59.033 52.381 0.00 0.00 34.92 4.04
421 422 2.242926 CCCCTATGAGCATCTTCGAGA 58.757 52.381 0.00 0.00 34.92 4.04
422 423 2.230992 CCCCTATGAGCATCTTCGAGAG 59.769 54.545 0.00 0.00 34.92 3.20
423 424 3.153130 CCCTATGAGCATCTTCGAGAGA 58.847 50.000 0.79 0.79 39.13 3.10
424 425 3.057596 CCCTATGAGCATCTTCGAGAGAC 60.058 52.174 0.35 0.00 41.84 3.36
425 426 3.820467 CCTATGAGCATCTTCGAGAGACT 59.180 47.826 0.35 0.00 41.84 3.24
426 427 5.000591 CCTATGAGCATCTTCGAGAGACTA 58.999 45.833 0.35 0.00 41.84 2.59
427 428 5.471797 CCTATGAGCATCTTCGAGAGACTAA 59.528 44.000 0.35 0.00 41.84 2.24
428 429 4.891627 TGAGCATCTTCGAGAGACTAAG 57.108 45.455 0.35 0.00 41.84 2.18
429 430 4.265893 TGAGCATCTTCGAGAGACTAAGT 58.734 43.478 0.35 0.00 41.84 2.24
430 431 4.334203 TGAGCATCTTCGAGAGACTAAGTC 59.666 45.833 0.35 0.00 41.84 3.01
431 432 3.311322 AGCATCTTCGAGAGACTAAGTCG 59.689 47.826 0.35 0.00 41.84 4.18
432 433 3.310227 GCATCTTCGAGAGACTAAGTCGA 59.690 47.826 1.01 1.01 41.84 4.20
433 434 4.784079 GCATCTTCGAGAGACTAAGTCGAC 60.784 50.000 7.70 7.70 42.16 4.20
434 435 3.922910 TCTTCGAGAGACTAAGTCGACA 58.077 45.455 19.50 0.00 42.16 4.35
435 436 4.505808 TCTTCGAGAGACTAAGTCGACAT 58.494 43.478 19.50 8.71 42.16 3.06
436 437 5.658468 TCTTCGAGAGACTAAGTCGACATA 58.342 41.667 19.50 9.54 42.16 2.29
437 438 5.519566 TCTTCGAGAGACTAAGTCGACATAC 59.480 44.000 19.50 4.36 42.16 2.39
438 439 5.008619 TCGAGAGACTAAGTCGACATACT 57.991 43.478 19.50 9.18 37.79 2.12
439 440 5.417811 TCGAGAGACTAAGTCGACATACTT 58.582 41.667 19.50 5.64 37.79 2.24
440 441 5.873712 TCGAGAGACTAAGTCGACATACTTT 59.126 40.000 19.50 5.23 37.79 2.66
441 442 7.038048 TCGAGAGACTAAGTCGACATACTTTA 58.962 38.462 19.50 6.19 37.79 1.85
442 443 7.547019 TCGAGAGACTAAGTCGACATACTTTAA 59.453 37.037 19.50 0.00 37.79 1.52
443 444 7.847078 CGAGAGACTAAGTCGACATACTTTAAG 59.153 40.741 19.50 1.21 40.20 1.85
444 445 8.789825 AGAGACTAAGTCGACATACTTTAAGA 57.210 34.615 19.50 0.00 40.20 2.10
445 446 9.398538 AGAGACTAAGTCGACATACTTTAAGAT 57.601 33.333 19.50 0.00 40.20 2.40
452 453 9.630098 AAGTCGACATACTTTAAGATTTACGAA 57.370 29.630 19.50 0.00 36.26 3.85
453 454 9.286946 AGTCGACATACTTTAAGATTTACGAAG 57.713 33.333 19.50 0.00 0.00 3.79
455 456 9.282247 TCGACATACTTTAAGATTTACGAAGTC 57.718 33.333 0.00 0.00 43.93 3.01
456 457 9.069078 CGACATACTTTAAGATTTACGAAGTCA 57.931 33.333 0.00 0.00 43.93 3.41
465 466 7.916128 AAGATTTACGAAGTCATCATAGACG 57.084 36.000 0.00 0.00 43.93 4.18
466 467 5.915758 AGATTTACGAAGTCATCATAGACGC 59.084 40.000 0.00 0.00 43.93 5.19
467 468 2.493713 ACGAAGTCATCATAGACGCC 57.506 50.000 0.00 0.00 43.24 5.68
468 469 2.025155 ACGAAGTCATCATAGACGCCT 58.975 47.619 0.00 0.00 43.24 5.52
469 470 2.033550 ACGAAGTCATCATAGACGCCTC 59.966 50.000 0.00 0.00 43.24 4.70
470 471 2.033424 CGAAGTCATCATAGACGCCTCA 59.967 50.000 0.00 0.00 43.24 3.86
471 472 3.304996 CGAAGTCATCATAGACGCCTCAT 60.305 47.826 0.00 0.00 43.24 2.90
472 473 4.083271 CGAAGTCATCATAGACGCCTCATA 60.083 45.833 0.00 0.00 43.24 2.15
473 474 5.384063 AAGTCATCATAGACGCCTCATAG 57.616 43.478 0.00 0.00 43.24 2.23
474 475 4.402829 AGTCATCATAGACGCCTCATAGT 58.597 43.478 0.00 0.00 43.24 2.12
475 476 4.457603 AGTCATCATAGACGCCTCATAGTC 59.542 45.833 0.00 0.00 43.24 2.59
480 481 2.616634 AGACGCCTCATAGTCTACGA 57.383 50.000 0.00 0.00 44.93 3.43
481 482 2.485903 AGACGCCTCATAGTCTACGAG 58.514 52.381 0.00 0.00 44.93 4.18
482 483 2.102757 AGACGCCTCATAGTCTACGAGA 59.897 50.000 4.50 0.00 44.93 4.04
483 484 2.871022 GACGCCTCATAGTCTACGAGAA 59.129 50.000 4.50 0.00 34.74 2.87
484 485 3.478509 ACGCCTCATAGTCTACGAGAAT 58.521 45.455 4.50 0.00 0.00 2.40
485 486 3.251245 ACGCCTCATAGTCTACGAGAATG 59.749 47.826 4.50 0.00 0.00 2.67
486 487 3.251245 CGCCTCATAGTCTACGAGAATGT 59.749 47.826 4.50 0.00 0.00 2.71
487 488 4.261238 CGCCTCATAGTCTACGAGAATGTT 60.261 45.833 4.50 0.00 0.00 2.71
488 489 5.593010 GCCTCATAGTCTACGAGAATGTTT 58.407 41.667 4.50 0.00 0.00 2.83
489 490 6.043411 GCCTCATAGTCTACGAGAATGTTTT 58.957 40.000 4.50 0.00 0.00 2.43
490 491 6.535508 GCCTCATAGTCTACGAGAATGTTTTT 59.464 38.462 4.50 0.00 0.00 1.94
505 506 1.357334 TTTTTCCCACTGAACGCGC 59.643 52.632 5.73 0.00 31.05 6.86
506 507 2.381665 TTTTTCCCACTGAACGCGCG 62.382 55.000 30.96 30.96 31.05 6.86
507 508 4.595538 TTCCCACTGAACGCGCGT 62.596 61.111 32.73 32.73 0.00 6.01
520 521 2.024305 CGCGTCGCCGAAGATACT 59.976 61.111 12.44 0.00 35.63 2.12
521 522 2.286559 CGCGTCGCCGAAGATACTG 61.287 63.158 12.44 0.00 35.63 2.74
522 523 1.063649 GCGTCGCCGAAGATACTGA 59.936 57.895 5.75 0.00 35.63 3.41
523 524 0.524816 GCGTCGCCGAAGATACTGAA 60.525 55.000 5.75 0.00 35.63 3.02
524 525 1.904144 CGTCGCCGAAGATACTGAAA 58.096 50.000 0.00 0.00 35.63 2.69
525 526 2.460918 CGTCGCCGAAGATACTGAAAT 58.539 47.619 0.00 0.00 35.63 2.17
526 527 3.624900 CGTCGCCGAAGATACTGAAATA 58.375 45.455 0.00 0.00 35.63 1.40
527 528 4.039703 CGTCGCCGAAGATACTGAAATAA 58.960 43.478 0.00 0.00 35.63 1.40
528 529 4.501559 CGTCGCCGAAGATACTGAAATAAA 59.498 41.667 0.00 0.00 35.63 1.40
529 530 5.175126 CGTCGCCGAAGATACTGAAATAAAT 59.825 40.000 0.00 0.00 35.63 1.40
530 531 6.582264 GTCGCCGAAGATACTGAAATAAATC 58.418 40.000 0.00 0.00 0.00 2.17
531 532 6.200286 GTCGCCGAAGATACTGAAATAAATCA 59.800 38.462 0.00 0.00 0.00 2.57
532 533 6.759356 TCGCCGAAGATACTGAAATAAATCAA 59.241 34.615 0.00 0.00 0.00 2.57
533 534 7.042725 TCGCCGAAGATACTGAAATAAATCAAG 60.043 37.037 0.00 0.00 0.00 3.02
534 535 7.042725 CGCCGAAGATACTGAAATAAATCAAGA 60.043 37.037 0.00 0.00 0.00 3.02
535 536 8.612619 GCCGAAGATACTGAAATAAATCAAGAA 58.387 33.333 0.00 0.00 0.00 2.52
561 562 7.656707 AAAATACAAGCACCATGATTTGAAC 57.343 32.000 0.00 0.00 0.00 3.18
562 563 3.665745 ACAAGCACCATGATTTGAACC 57.334 42.857 0.00 0.00 0.00 3.62
563 564 2.299867 ACAAGCACCATGATTTGAACCC 59.700 45.455 0.00 0.00 0.00 4.11
564 565 2.564062 CAAGCACCATGATTTGAACCCT 59.436 45.455 0.00 0.00 0.00 4.34
565 566 2.173519 AGCACCATGATTTGAACCCTG 58.826 47.619 0.00 0.00 0.00 4.45
566 567 2.170166 GCACCATGATTTGAACCCTGA 58.830 47.619 0.00 0.00 0.00 3.86
567 568 2.762327 GCACCATGATTTGAACCCTGAT 59.238 45.455 0.00 0.00 0.00 2.90
568 569 3.953612 GCACCATGATTTGAACCCTGATA 59.046 43.478 0.00 0.00 0.00 2.15
569 570 4.402155 GCACCATGATTTGAACCCTGATAA 59.598 41.667 0.00 0.00 0.00 1.75
570 571 5.105392 GCACCATGATTTGAACCCTGATAAA 60.105 40.000 0.00 0.00 0.00 1.40
571 572 6.407299 GCACCATGATTTGAACCCTGATAAAT 60.407 38.462 0.00 0.00 0.00 1.40
572 573 7.558604 CACCATGATTTGAACCCTGATAAATT 58.441 34.615 0.00 0.00 0.00 1.82
573 574 8.694540 CACCATGATTTGAACCCTGATAAATTA 58.305 33.333 0.00 0.00 0.00 1.40
574 575 8.917088 ACCATGATTTGAACCCTGATAAATTAG 58.083 33.333 0.00 0.00 0.00 1.73
575 576 9.135189 CCATGATTTGAACCCTGATAAATTAGA 57.865 33.333 0.00 0.00 0.00 2.10
580 581 9.927081 ATTTGAACCCTGATAAATTAGAGATGT 57.073 29.630 0.00 0.00 0.00 3.06
581 582 8.964476 TTGAACCCTGATAAATTAGAGATGTC 57.036 34.615 0.00 0.00 0.00 3.06
582 583 8.089625 TGAACCCTGATAAATTAGAGATGTCA 57.910 34.615 0.00 0.00 0.00 3.58
583 584 8.717717 TGAACCCTGATAAATTAGAGATGTCAT 58.282 33.333 0.00 0.00 0.00 3.06
584 585 9.213799 GAACCCTGATAAATTAGAGATGTCATC 57.786 37.037 4.52 4.52 0.00 2.92
585 586 8.503428 ACCCTGATAAATTAGAGATGTCATCT 57.497 34.615 15.40 15.40 43.70 2.90
586 587 8.943085 ACCCTGATAAATTAGAGATGTCATCTT 58.057 33.333 16.50 9.19 40.38 2.40
587 588 9.790344 CCCTGATAAATTAGAGATGTCATCTTT 57.210 33.333 16.50 13.32 40.38 2.52
596 597 5.655488 AGAGATGTCATCTTTGTCCTAACG 58.345 41.667 16.50 0.00 40.38 3.18
598 599 6.097554 AGAGATGTCATCTTTGTCCTAACGAT 59.902 38.462 16.50 0.00 40.38 3.73
607 608 1.067425 TGTCCTAACGATCCAACCACG 60.067 52.381 0.00 0.00 0.00 4.94
612 613 3.181473 CCTAACGATCCAACCACGGATTA 60.181 47.826 0.00 0.00 46.13 1.75
617 618 3.677700 CGATCCAACCACGGATTAGTTCA 60.678 47.826 0.00 0.00 46.13 3.18
618 619 3.048337 TCCAACCACGGATTAGTTCAC 57.952 47.619 0.00 0.00 0.00 3.18
620 621 2.409975 CAACCACGGATTAGTTCACGT 58.590 47.619 0.00 0.00 40.60 4.49
654 655 3.040147 TGGATGTGTTCTCTTCGTTCC 57.960 47.619 0.00 0.00 0.00 3.62
694 695 0.475906 CCTCCCCACATCAAGGATCC 59.524 60.000 2.48 2.48 0.00 3.36
757 760 3.745458 CGTTTTTGCTGTGCCCAATTAAT 59.255 39.130 0.00 0.00 0.00 1.40
1017 1031 0.249447 CCATGCATGCTGCCATCAAG 60.249 55.000 21.69 0.00 44.23 3.02
1235 1249 2.188161 GGTTGTTGTTCCGCCCGAA 61.188 57.895 0.00 0.00 0.00 4.30
1512 1526 1.959899 GCATCGACACGTGGCTTCTG 61.960 60.000 21.24 14.46 0.00 3.02
1696 1710 2.670414 GAGCAAGACGAAGGATGTGAAG 59.330 50.000 0.00 0.00 0.00 3.02
1710 1724 1.004277 GTGAAGGTCAGACGCACTCG 61.004 60.000 10.81 0.00 42.43 4.18
1941 1955 3.616379 CGATGGACAAGAAAGAGAGCTTC 59.384 47.826 0.00 0.00 31.82 3.86
2273 2287 2.592308 GTGGATCAGAGGCCACCC 59.408 66.667 5.01 0.00 46.91 4.61
2274 2288 2.692368 TGGATCAGAGGCCACCCC 60.692 66.667 5.01 0.00 0.00 4.95
2277 2291 1.690633 GATCAGAGGCCACCCCTGA 60.691 63.158 5.01 12.37 46.60 3.86
2278 2292 1.692042 ATCAGAGGCCACCCCTGAG 60.692 63.158 17.76 0.00 46.60 3.35
2279 2293 2.186873 ATCAGAGGCCACCCCTGAGA 62.187 60.000 17.76 1.53 46.60 3.27
2285 2299 1.301293 GCCACCCCTGAGAAGAAGG 59.699 63.158 0.00 0.00 34.31 3.46
2295 2309 1.482593 TGAGAAGAAGGGAAGATCGCC 59.517 52.381 0.00 0.00 0.00 5.54
2299 2313 1.592939 GAAGGGAAGATCGCCGAGC 60.593 63.158 0.00 0.00 0.00 5.03
2361 2379 1.398595 CGCTGGTTTGCTCTTTTTCG 58.601 50.000 0.00 0.00 0.00 3.46
2386 2404 2.283617 CGATCCGTGAGATTTGAAGCAG 59.716 50.000 0.00 0.00 34.42 4.24
2391 2409 3.250762 CCGTGAGATTTGAAGCAGTTTGA 59.749 43.478 0.00 0.00 0.00 2.69
2394 2413 5.561532 CGTGAGATTTGAAGCAGTTTGATGT 60.562 40.000 0.00 0.00 0.00 3.06
2405 2424 3.799574 GCAGTTTGATGTGTGGAATGCAA 60.800 43.478 0.00 0.00 0.00 4.08
2430 2449 5.220796 GGTTAATGATTTTACCGCTCAGGAC 60.221 44.000 0.00 0.00 45.00 3.85
2445 2464 4.873259 GCTCAGGACTTTTTAGATGTCTCC 59.127 45.833 0.00 0.00 33.96 3.71
2504 2564 4.191544 CGAGGTTTTCTCTGAATATGCCA 58.808 43.478 0.00 0.00 40.30 4.92
2568 2641 2.747396 ACAACATGCGGCAATTTCAT 57.253 40.000 6.82 0.00 0.00 2.57
2588 2671 9.683069 ATTTCATAATTCATTTCGTATTCAGCC 57.317 29.630 0.00 0.00 0.00 4.85
2620 2708 1.142465 CATTCATGGCTGGGCTCTACT 59.858 52.381 0.00 0.00 0.00 2.57
2621 2709 2.174685 TTCATGGCTGGGCTCTACTA 57.825 50.000 0.00 0.00 0.00 1.82
2622 2710 1.414158 TCATGGCTGGGCTCTACTAC 58.586 55.000 0.00 0.00 0.00 2.73
2670 2758 4.911033 GCCGGATTTTGAAAAGCAAATTTG 59.089 37.500 14.03 14.03 45.30 2.32
2674 2762 7.044183 CCGGATTTTGAAAAGCAAATTTGTTTG 60.044 33.333 19.28 4.68 45.30 2.93
2713 2807 0.035152 CCATCCCACTTGTGCTGCTA 60.035 55.000 0.00 0.00 0.00 3.49
2715 2809 0.987294 ATCCCACTTGTGCTGCTAGT 59.013 50.000 0.00 0.00 33.58 2.57
2716 2810 1.639722 TCCCACTTGTGCTGCTAGTA 58.360 50.000 0.00 0.00 32.15 1.82
2717 2811 1.550524 TCCCACTTGTGCTGCTAGTAG 59.449 52.381 3.05 3.05 32.15 2.57
2748 2842 3.200483 TCTCCTGCATCACATTGAATCG 58.800 45.455 0.00 0.00 0.00 3.34
2751 2845 2.286008 CCTGCATCACATTGAATCGTCG 60.286 50.000 0.00 0.00 0.00 5.12
2900 3007 8.465273 AGTAAATATCTGTATTTTTGGGGAGC 57.535 34.615 0.00 0.00 40.21 4.70
2917 3024 0.536260 AGCTCTCATTCAGCGCTTCT 59.464 50.000 7.50 0.00 40.50 2.85
2994 3101 5.043248 CAGTTTTTCAGCCGATTTTTCTGT 58.957 37.500 0.00 0.00 0.00 3.41
3010 3117 8.962884 ATTTTTCTGTATTTTCAGCTGGTTTT 57.037 26.923 15.13 0.00 35.63 2.43
3111 3218 9.826574 GAATTTTTAAACAACTCCCCTAGTTTT 57.173 29.630 0.00 0.00 46.61 2.43
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.671963 GCCGGTGGAGGTTGTTCC 60.672 66.667 1.90 0.00 37.77 3.62
1 2 0.035739 TAAGCCGGTGGAGGTTGTTC 59.964 55.000 1.90 0.00 0.00 3.18
2 3 0.036306 CTAAGCCGGTGGAGGTTGTT 59.964 55.000 1.90 0.00 0.00 2.83
3 4 1.677552 CTAAGCCGGTGGAGGTTGT 59.322 57.895 1.90 0.00 0.00 3.32
4 5 1.078426 CCTAAGCCGGTGGAGGTTG 60.078 63.158 1.90 0.00 0.00 3.77
5 6 1.538135 ACCTAAGCCGGTGGAGGTT 60.538 57.895 15.20 0.00 39.32 3.50
6 7 2.122056 ACCTAAGCCGGTGGAGGT 59.878 61.111 15.20 15.20 37.48 3.85
12 13 1.611261 TGCTACCACCTAAGCCGGT 60.611 57.895 1.90 0.00 37.97 5.28
13 14 1.144057 CTGCTACCACCTAAGCCGG 59.856 63.158 0.00 0.00 37.97 6.13
14 15 0.179108 GTCTGCTACCACCTAAGCCG 60.179 60.000 0.00 0.00 37.97 5.52
15 16 3.762674 GTCTGCTACCACCTAAGCC 57.237 57.895 0.00 0.00 37.97 4.35
25 26 0.465705 TGCTATGCCTGGTCTGCTAC 59.534 55.000 0.00 0.00 0.00 3.58
26 27 0.755079 CTGCTATGCCTGGTCTGCTA 59.245 55.000 0.00 0.00 0.00 3.49
27 28 1.525923 CTGCTATGCCTGGTCTGCT 59.474 57.895 0.00 0.00 0.00 4.24
28 29 2.185494 GCTGCTATGCCTGGTCTGC 61.185 63.158 0.00 0.00 0.00 4.26
29 30 0.814410 CTGCTGCTATGCCTGGTCTG 60.814 60.000 0.00 0.00 0.00 3.51
30 31 0.979709 TCTGCTGCTATGCCTGGTCT 60.980 55.000 0.00 0.00 0.00 3.85
31 32 0.532417 CTCTGCTGCTATGCCTGGTC 60.532 60.000 0.00 0.00 0.00 4.02
32 33 1.525923 CTCTGCTGCTATGCCTGGT 59.474 57.895 0.00 0.00 0.00 4.00
33 34 1.227883 CCTCTGCTGCTATGCCTGG 60.228 63.158 0.00 0.00 0.00 4.45
34 35 1.892862 GCCTCTGCTGCTATGCCTG 60.893 63.158 0.00 0.00 33.53 4.85
35 36 1.706995 ATGCCTCTGCTGCTATGCCT 61.707 55.000 0.00 0.00 38.71 4.75
36 37 0.035881 TATGCCTCTGCTGCTATGCC 59.964 55.000 0.00 0.00 38.71 4.40
37 38 1.155042 GTATGCCTCTGCTGCTATGC 58.845 55.000 0.00 0.00 38.71 3.14
38 39 1.071228 TGGTATGCCTCTGCTGCTATG 59.929 52.381 0.16 0.00 38.71 2.23
39 40 1.347050 CTGGTATGCCTCTGCTGCTAT 59.653 52.381 0.16 0.00 38.71 2.97
40 41 0.755079 CTGGTATGCCTCTGCTGCTA 59.245 55.000 0.16 0.00 38.71 3.49
41 42 0.979709 TCTGGTATGCCTCTGCTGCT 60.980 55.000 0.16 0.00 38.71 4.24
42 43 0.813210 GTCTGGTATGCCTCTGCTGC 60.813 60.000 0.16 0.00 38.71 5.25
43 44 0.179062 GGTCTGGTATGCCTCTGCTG 60.179 60.000 0.16 0.00 38.71 4.41
44 45 1.341156 GGGTCTGGTATGCCTCTGCT 61.341 60.000 0.16 0.00 38.71 4.24
45 46 1.147153 GGGTCTGGTATGCCTCTGC 59.853 63.158 0.16 0.00 35.27 4.26
46 47 1.700042 GGGGGTCTGGTATGCCTCTG 61.700 65.000 0.16 0.00 35.27 3.35
47 48 1.384643 GGGGGTCTGGTATGCCTCT 60.385 63.158 0.16 0.00 35.27 3.69
48 49 1.384643 AGGGGGTCTGGTATGCCTC 60.385 63.158 0.16 0.00 35.27 4.70
49 50 1.694169 CAGGGGGTCTGGTATGCCT 60.694 63.158 0.16 0.00 39.76 4.75
50 51 2.919043 CAGGGGGTCTGGTATGCC 59.081 66.667 0.00 0.00 39.76 4.40
84 85 1.229359 CAGAGCTTCATGGGCCCAT 59.771 57.895 32.75 32.75 37.08 4.00
85 86 2.679092 CAGAGCTTCATGGGCCCA 59.321 61.111 30.92 30.92 0.00 5.36
86 87 2.832201 GCAGAGCTTCATGGGCCC 60.832 66.667 17.59 17.59 0.00 5.80
87 88 2.832201 GGCAGAGCTTCATGGGCC 60.832 66.667 0.00 0.00 0.00 5.80
88 89 3.207669 CGGCAGAGCTTCATGGGC 61.208 66.667 0.00 0.00 0.00 5.36
89 90 3.207669 GCGGCAGAGCTTCATGGG 61.208 66.667 0.00 0.00 0.00 4.00
90 91 3.207669 GGCGGCAGAGCTTCATGG 61.208 66.667 3.07 0.00 37.29 3.66
91 92 3.570638 CGGCGGCAGAGCTTCATG 61.571 66.667 10.53 0.00 37.29 3.07
92 93 4.087892 ACGGCGGCAGAGCTTCAT 62.088 61.111 13.24 0.00 37.29 2.57
138 139 4.180946 CTCCTCGCGACAGGGACG 62.181 72.222 3.71 1.48 35.38 4.79
139 140 4.500116 GCTCCTCGCGACAGGGAC 62.500 72.222 3.71 2.36 35.38 4.46
140 141 4.742649 AGCTCCTCGCGACAGGGA 62.743 66.667 14.16 14.16 45.59 4.20
141 142 4.200283 GAGCTCCTCGCGACAGGG 62.200 72.222 3.71 5.43 45.59 4.45
142 143 3.443925 TGAGCTCCTCGCGACAGG 61.444 66.667 12.15 6.34 45.59 4.00
143 144 2.202544 GTGAGCTCCTCGCGACAG 60.203 66.667 12.15 5.18 45.59 3.51
144 145 3.749064 GGTGAGCTCCTCGCGACA 61.749 66.667 12.15 0.00 45.59 4.35
145 146 4.838486 CGGTGAGCTCCTCGCGAC 62.838 72.222 12.15 0.67 45.59 5.19
148 149 3.760035 TTCCGGTGAGCTCCTCGC 61.760 66.667 12.15 0.00 39.93 5.03
149 150 2.182030 GTTCCGGTGAGCTCCTCG 59.818 66.667 12.15 14.45 32.35 4.63
150 151 2.283529 TGGTTCCGGTGAGCTCCTC 61.284 63.158 12.15 4.30 0.00 3.71
151 152 2.203788 TGGTTCCGGTGAGCTCCT 60.204 61.111 12.15 0.00 0.00 3.69
152 153 2.047179 GTGGTTCCGGTGAGCTCC 60.047 66.667 12.15 2.19 0.00 4.70
153 154 2.047179 GGTGGTTCCGGTGAGCTC 60.047 66.667 6.82 6.82 0.00 4.09
162 163 0.887836 GGTTGTTCTCCGGTGGTTCC 60.888 60.000 0.00 0.00 0.00 3.62
163 164 0.887836 GGGTTGTTCTCCGGTGGTTC 60.888 60.000 0.00 0.00 0.00 3.62
164 165 1.149854 GGGTTGTTCTCCGGTGGTT 59.850 57.895 0.00 0.00 0.00 3.67
165 166 2.073716 TGGGTTGTTCTCCGGTGGT 61.074 57.895 0.00 0.00 0.00 4.16
166 167 1.599797 GTGGGTTGTTCTCCGGTGG 60.600 63.158 0.00 0.00 0.00 4.61
167 168 0.884704 CAGTGGGTTGTTCTCCGGTG 60.885 60.000 0.00 0.00 0.00 4.94
168 169 1.450211 CAGTGGGTTGTTCTCCGGT 59.550 57.895 0.00 0.00 0.00 5.28
169 170 1.966451 GCAGTGGGTTGTTCTCCGG 60.966 63.158 0.00 0.00 0.00 5.14
170 171 2.317609 CGCAGTGGGTTGTTCTCCG 61.318 63.158 0.00 0.00 0.00 4.63
171 172 1.966451 CCGCAGTGGGTTGTTCTCC 60.966 63.158 6.43 0.00 0.00 3.71
172 173 2.617274 GCCGCAGTGGGTTGTTCTC 61.617 63.158 6.43 0.00 38.63 2.87
173 174 2.594592 GCCGCAGTGGGTTGTTCT 60.595 61.111 6.43 0.00 38.63 3.01
174 175 3.670377 GGCCGCAGTGGGTTGTTC 61.670 66.667 6.43 0.00 38.63 3.18
175 176 4.514585 TGGCCGCAGTGGGTTGTT 62.515 61.111 6.43 0.00 38.63 2.83
202 203 3.480133 GATCTGGGTCGGGGTGGG 61.480 72.222 0.00 0.00 0.00 4.61
203 204 3.849951 CGATCTGGGTCGGGGTGG 61.850 72.222 0.00 0.00 37.94 4.61
224 225 0.900647 CCCAGATCTAGGCCCTACGG 60.901 65.000 0.00 0.00 0.00 4.02
225 226 1.536943 GCCCAGATCTAGGCCCTACG 61.537 65.000 20.41 0.82 43.76 3.51
226 227 2.367529 GCCCAGATCTAGGCCCTAC 58.632 63.158 20.41 0.00 43.76 3.18
227 228 4.977810 GCCCAGATCTAGGCCCTA 57.022 61.111 20.41 0.00 43.76 3.53
232 233 2.876945 CGGCTGGCCCAGATCTAGG 61.877 68.421 16.85 2.31 32.44 3.02
233 234 2.739784 CGGCTGGCCCAGATCTAG 59.260 66.667 16.85 0.00 32.44 2.43
234 235 2.844362 CCGGCTGGCCCAGATCTA 60.844 66.667 16.85 0.00 32.44 1.98
342 343 4.201679 TATGTGAGTCGGCCGGCG 62.202 66.667 26.29 16.23 0.00 6.46
343 344 2.585247 GTATGTGAGTCGGCCGGC 60.585 66.667 25.39 25.39 0.00 6.13
344 345 1.065928 GAGTATGTGAGTCGGCCGG 59.934 63.158 27.83 6.80 0.00 6.13
345 346 1.298413 CGAGTATGTGAGTCGGCCG 60.298 63.158 22.12 22.12 45.61 6.13
346 347 4.711980 CGAGTATGTGAGTCGGCC 57.288 61.111 0.00 0.00 45.61 6.13
350 351 4.294416 AGTGTATGCGAGTATGTGAGTC 57.706 45.455 0.00 0.00 0.00 3.36
351 352 5.450137 GGTTAGTGTATGCGAGTATGTGAGT 60.450 44.000 0.00 0.00 0.00 3.41
352 353 4.976731 GGTTAGTGTATGCGAGTATGTGAG 59.023 45.833 0.00 0.00 0.00 3.51
353 354 4.202080 GGGTTAGTGTATGCGAGTATGTGA 60.202 45.833 0.00 0.00 0.00 3.58
354 355 4.049186 GGGTTAGTGTATGCGAGTATGTG 58.951 47.826 0.00 0.00 0.00 3.21
355 356 3.069158 GGGGTTAGTGTATGCGAGTATGT 59.931 47.826 0.00 0.00 0.00 2.29
356 357 3.321111 AGGGGTTAGTGTATGCGAGTATG 59.679 47.826 0.00 0.00 0.00 2.39
357 358 3.573695 AGGGGTTAGTGTATGCGAGTAT 58.426 45.455 0.00 0.00 0.00 2.12
358 359 3.022557 AGGGGTTAGTGTATGCGAGTA 57.977 47.619 0.00 0.00 0.00 2.59
359 360 1.861982 AGGGGTTAGTGTATGCGAGT 58.138 50.000 0.00 0.00 0.00 4.18
360 361 3.572682 TCATAGGGGTTAGTGTATGCGAG 59.427 47.826 0.00 0.00 0.00 5.03
361 362 3.568443 TCATAGGGGTTAGTGTATGCGA 58.432 45.455 0.00 0.00 0.00 5.10
362 363 4.056050 GTTCATAGGGGTTAGTGTATGCG 58.944 47.826 0.00 0.00 0.00 4.73
363 364 4.056050 CGTTCATAGGGGTTAGTGTATGC 58.944 47.826 0.00 0.00 0.00 3.14
364 365 4.056050 GCGTTCATAGGGGTTAGTGTATG 58.944 47.826 0.00 0.00 0.00 2.39
365 366 3.707611 TGCGTTCATAGGGGTTAGTGTAT 59.292 43.478 0.00 0.00 0.00 2.29
366 367 3.098377 TGCGTTCATAGGGGTTAGTGTA 58.902 45.455 0.00 0.00 0.00 2.90
367 368 1.903860 TGCGTTCATAGGGGTTAGTGT 59.096 47.619 0.00 0.00 0.00 3.55
368 369 2.277084 GTGCGTTCATAGGGGTTAGTG 58.723 52.381 0.00 0.00 0.00 2.74
369 370 1.903860 TGTGCGTTCATAGGGGTTAGT 59.096 47.619 0.00 0.00 0.00 2.24
370 371 2.277084 GTGTGCGTTCATAGGGGTTAG 58.723 52.381 0.00 0.00 0.00 2.34
371 372 1.404449 CGTGTGCGTTCATAGGGGTTA 60.404 52.381 0.00 0.00 0.00 2.85
372 373 0.672401 CGTGTGCGTTCATAGGGGTT 60.672 55.000 0.00 0.00 0.00 4.11
373 374 1.079405 CGTGTGCGTTCATAGGGGT 60.079 57.895 0.00 0.00 0.00 4.95
374 375 2.461110 GCGTGTGCGTTCATAGGGG 61.461 63.158 0.00 0.00 40.81 4.79
375 376 3.089784 GCGTGTGCGTTCATAGGG 58.910 61.111 0.00 0.00 40.81 3.53
385 386 3.047877 GGTAGGGTGTGCGTGTGC 61.048 66.667 0.00 0.00 43.20 4.57
386 387 2.358247 GGGTAGGGTGTGCGTGTG 60.358 66.667 0.00 0.00 0.00 3.82
387 388 2.735151 TAGGGGTAGGGTGTGCGTGT 62.735 60.000 0.00 0.00 0.00 4.49
388 389 1.335132 ATAGGGGTAGGGTGTGCGTG 61.335 60.000 0.00 0.00 0.00 5.34
389 390 1.002533 ATAGGGGTAGGGTGTGCGT 59.997 57.895 0.00 0.00 0.00 5.24
390 391 1.046472 TCATAGGGGTAGGGTGTGCG 61.046 60.000 0.00 0.00 0.00 5.34
391 392 0.759346 CTCATAGGGGTAGGGTGTGC 59.241 60.000 0.00 0.00 0.00 4.57
392 393 0.759346 GCTCATAGGGGTAGGGTGTG 59.241 60.000 0.00 0.00 0.00 3.82
393 394 0.341961 TGCTCATAGGGGTAGGGTGT 59.658 55.000 0.00 0.00 0.00 4.16
394 395 1.625818 GATGCTCATAGGGGTAGGGTG 59.374 57.143 0.00 0.00 0.00 4.61
395 396 1.509961 AGATGCTCATAGGGGTAGGGT 59.490 52.381 0.00 0.00 0.00 4.34
396 397 2.334006 AGATGCTCATAGGGGTAGGG 57.666 55.000 0.00 0.00 0.00 3.53
397 398 2.232452 CGAAGATGCTCATAGGGGTAGG 59.768 54.545 0.00 0.00 0.00 3.18
398 399 3.157881 TCGAAGATGCTCATAGGGGTAG 58.842 50.000 0.00 0.00 0.00 3.18
399 400 3.157881 CTCGAAGATGCTCATAGGGGTA 58.842 50.000 0.00 0.00 33.89 3.69
400 401 1.967066 CTCGAAGATGCTCATAGGGGT 59.033 52.381 0.00 0.00 33.89 4.95
401 402 2.230992 CTCTCGAAGATGCTCATAGGGG 59.769 54.545 0.00 0.00 33.89 4.79
402 403 3.057596 GTCTCTCGAAGATGCTCATAGGG 60.058 52.174 0.00 0.00 36.11 3.53
403 404 3.820467 AGTCTCTCGAAGATGCTCATAGG 59.180 47.826 0.00 0.00 36.11 2.57
404 405 6.204688 ACTTAGTCTCTCGAAGATGCTCATAG 59.795 42.308 0.00 0.00 36.11 2.23
405 406 6.058833 ACTTAGTCTCTCGAAGATGCTCATA 58.941 40.000 0.00 0.00 36.11 2.15
406 407 4.887071 ACTTAGTCTCTCGAAGATGCTCAT 59.113 41.667 0.00 0.00 36.11 2.90
407 408 4.265893 ACTTAGTCTCTCGAAGATGCTCA 58.734 43.478 0.00 0.00 36.11 4.26
408 409 4.551990 CGACTTAGTCTCTCGAAGATGCTC 60.552 50.000 10.83 0.00 36.11 4.26
409 410 3.311322 CGACTTAGTCTCTCGAAGATGCT 59.689 47.826 10.83 0.00 36.11 3.79
410 411 3.310227 TCGACTTAGTCTCTCGAAGATGC 59.690 47.826 10.83 0.00 36.11 3.91
411 412 4.330347 TGTCGACTTAGTCTCTCGAAGATG 59.670 45.833 17.92 0.00 38.13 2.90
412 413 4.505808 TGTCGACTTAGTCTCTCGAAGAT 58.494 43.478 17.92 0.00 38.13 2.40
413 414 3.922910 TGTCGACTTAGTCTCTCGAAGA 58.077 45.455 17.92 0.00 38.13 2.87
414 415 4.868450 ATGTCGACTTAGTCTCTCGAAG 57.132 45.455 17.92 0.00 38.13 3.79
415 416 5.417811 AGTATGTCGACTTAGTCTCTCGAA 58.582 41.667 17.92 0.00 38.13 3.71
416 417 5.008619 AGTATGTCGACTTAGTCTCTCGA 57.991 43.478 17.92 0.21 34.14 4.04
417 418 5.721876 AAGTATGTCGACTTAGTCTCTCG 57.278 43.478 17.92 0.00 37.90 4.04
418 419 8.881743 TCTTAAAGTATGTCGACTTAGTCTCTC 58.118 37.037 17.92 2.11 38.75 3.20
419 420 8.789825 TCTTAAAGTATGTCGACTTAGTCTCT 57.210 34.615 17.92 5.42 38.75 3.10
426 427 9.630098 TTCGTAAATCTTAAAGTATGTCGACTT 57.370 29.630 17.92 13.30 41.50 3.01
427 428 9.286946 CTTCGTAAATCTTAAAGTATGTCGACT 57.713 33.333 17.92 4.95 0.00 4.18
428 429 9.070149 ACTTCGTAAATCTTAAAGTATGTCGAC 57.930 33.333 9.11 9.11 0.00 4.20
429 430 9.282247 GACTTCGTAAATCTTAAAGTATGTCGA 57.718 33.333 0.00 0.00 30.68 4.20
430 431 9.069078 TGACTTCGTAAATCTTAAAGTATGTCG 57.931 33.333 0.00 0.00 30.68 4.35
439 440 9.447040 CGTCTATGATGACTTCGTAAATCTTAA 57.553 33.333 0.00 0.00 35.00 1.85
440 441 7.590322 GCGTCTATGATGACTTCGTAAATCTTA 59.410 37.037 0.00 0.00 35.00 2.10
441 442 6.418226 GCGTCTATGATGACTTCGTAAATCTT 59.582 38.462 0.00 0.00 35.00 2.40
442 443 5.915758 GCGTCTATGATGACTTCGTAAATCT 59.084 40.000 0.00 0.00 35.00 2.40
443 444 5.117287 GGCGTCTATGATGACTTCGTAAATC 59.883 44.000 0.00 0.00 35.00 2.17
444 445 4.982916 GGCGTCTATGATGACTTCGTAAAT 59.017 41.667 0.00 0.00 35.00 1.40
445 446 4.097437 AGGCGTCTATGATGACTTCGTAAA 59.903 41.667 0.00 0.00 32.18 2.01
446 447 3.630769 AGGCGTCTATGATGACTTCGTAA 59.369 43.478 0.00 0.00 32.18 3.18
447 448 3.211865 AGGCGTCTATGATGACTTCGTA 58.788 45.455 0.00 0.00 32.18 3.43
448 449 2.025155 AGGCGTCTATGATGACTTCGT 58.975 47.619 0.00 0.00 32.18 3.85
449 450 2.033424 TGAGGCGTCTATGATGACTTCG 59.967 50.000 8.06 0.00 37.00 3.79
450 451 3.717400 TGAGGCGTCTATGATGACTTC 57.283 47.619 8.06 0.00 37.00 3.01
451 452 4.830046 ACTATGAGGCGTCTATGATGACTT 59.170 41.667 8.06 0.00 37.00 3.01
452 453 4.402829 ACTATGAGGCGTCTATGATGACT 58.597 43.478 8.06 0.00 40.00 3.41
453 454 4.457603 AGACTATGAGGCGTCTATGATGAC 59.542 45.833 8.06 0.00 38.63 3.06
454 455 4.657013 AGACTATGAGGCGTCTATGATGA 58.343 43.478 8.06 0.00 38.63 2.92
455 456 5.446607 CGTAGACTATGAGGCGTCTATGATG 60.447 48.000 8.06 0.00 45.78 3.07
456 457 4.632251 CGTAGACTATGAGGCGTCTATGAT 59.368 45.833 8.06 0.00 45.78 2.45
457 458 3.995048 CGTAGACTATGAGGCGTCTATGA 59.005 47.826 8.06 0.00 45.78 2.15
458 459 3.995048 TCGTAGACTATGAGGCGTCTATG 59.005 47.826 8.06 8.66 44.95 2.23
459 460 4.021280 TCTCGTAGACTATGAGGCGTCTAT 60.021 45.833 25.01 2.71 42.67 1.98
460 461 3.320256 TCTCGTAGACTATGAGGCGTCTA 59.680 47.826 25.01 7.82 41.19 2.59
461 462 2.102757 TCTCGTAGACTATGAGGCGTCT 59.897 50.000 25.01 0.00 41.19 4.18
462 463 2.481854 TCTCGTAGACTATGAGGCGTC 58.518 52.381 25.01 0.00 41.19 5.19
463 464 2.616634 TCTCGTAGACTATGAGGCGT 57.383 50.000 25.01 0.00 41.19 5.68
464 465 3.251245 ACATTCTCGTAGACTATGAGGCG 59.749 47.826 25.01 17.58 41.19 5.52
465 466 4.839668 ACATTCTCGTAGACTATGAGGC 57.160 45.455 25.01 0.00 41.19 4.70
487 488 1.357334 GCGCGTTCAGTGGGAAAAA 59.643 52.632 8.43 0.00 37.23 1.94
488 489 2.887889 CGCGCGTTCAGTGGGAAAA 61.888 57.895 24.19 0.00 44.87 2.29
489 490 3.342627 CGCGCGTTCAGTGGGAAA 61.343 61.111 24.19 0.00 44.87 3.13
490 491 4.595538 ACGCGCGTTCAGTGGGAA 62.596 61.111 32.73 0.00 44.87 3.97
506 507 5.961395 TTTATTTCAGTATCTTCGGCGAC 57.039 39.130 10.16 0.00 0.00 5.19
507 508 6.277605 TGATTTATTTCAGTATCTTCGGCGA 58.722 36.000 4.99 4.99 0.00 5.54
508 509 6.525121 TGATTTATTTCAGTATCTTCGGCG 57.475 37.500 0.00 0.00 0.00 6.46
509 510 8.142994 TCTTGATTTATTTCAGTATCTTCGGC 57.857 34.615 0.00 0.00 0.00 5.54
536 537 7.173047 GGTTCAAATCATGGTGCTTGTATTTTT 59.827 33.333 0.00 0.00 0.00 1.94
537 538 6.650390 GGTTCAAATCATGGTGCTTGTATTTT 59.350 34.615 0.00 0.00 0.00 1.82
538 539 6.165577 GGTTCAAATCATGGTGCTTGTATTT 58.834 36.000 0.00 0.00 0.00 1.40
539 540 5.337491 GGGTTCAAATCATGGTGCTTGTATT 60.337 40.000 0.00 0.00 0.00 1.89
540 541 4.160252 GGGTTCAAATCATGGTGCTTGTAT 59.840 41.667 0.00 0.00 0.00 2.29
541 542 3.509575 GGGTTCAAATCATGGTGCTTGTA 59.490 43.478 0.00 0.00 0.00 2.41
542 543 2.299867 GGGTTCAAATCATGGTGCTTGT 59.700 45.455 0.00 0.00 0.00 3.16
543 544 2.564062 AGGGTTCAAATCATGGTGCTTG 59.436 45.455 0.00 0.00 0.00 4.01
544 545 2.564062 CAGGGTTCAAATCATGGTGCTT 59.436 45.455 0.00 0.00 0.00 3.91
545 546 2.173519 CAGGGTTCAAATCATGGTGCT 58.826 47.619 0.00 0.00 0.00 4.40
546 547 2.170166 TCAGGGTTCAAATCATGGTGC 58.830 47.619 0.00 0.00 0.00 5.01
547 548 6.528537 TTTATCAGGGTTCAAATCATGGTG 57.471 37.500 0.00 0.00 0.00 4.17
548 549 7.738437 AATTTATCAGGGTTCAAATCATGGT 57.262 32.000 0.00 0.00 0.00 3.55
549 550 9.135189 TCTAATTTATCAGGGTTCAAATCATGG 57.865 33.333 0.00 0.00 0.00 3.66
554 555 9.927081 ACATCTCTAATTTATCAGGGTTCAAAT 57.073 29.630 0.00 0.00 0.00 2.32
555 556 9.396022 GACATCTCTAATTTATCAGGGTTCAAA 57.604 33.333 0.00 0.00 0.00 2.69
556 557 8.548025 TGACATCTCTAATTTATCAGGGTTCAA 58.452 33.333 0.00 0.00 0.00 2.69
557 558 8.089625 TGACATCTCTAATTTATCAGGGTTCA 57.910 34.615 0.00 0.00 0.00 3.18
558 559 9.213799 GATGACATCTCTAATTTATCAGGGTTC 57.786 37.037 8.25 0.00 0.00 3.62
559 560 8.943085 AGATGACATCTCTAATTTATCAGGGTT 58.057 33.333 12.37 0.00 33.42 4.11
560 561 8.503428 AGATGACATCTCTAATTTATCAGGGT 57.497 34.615 12.37 0.00 33.42 4.34
561 562 9.790344 AAAGATGACATCTCTAATTTATCAGGG 57.210 33.333 18.21 0.00 39.08 4.45
569 570 9.606631 GTTAGGACAAAGATGACATCTCTAATT 57.393 33.333 18.21 6.37 39.08 1.40
570 571 7.923344 CGTTAGGACAAAGATGACATCTCTAAT 59.077 37.037 18.21 4.97 39.08 1.73
571 572 7.122204 TCGTTAGGACAAAGATGACATCTCTAA 59.878 37.037 18.21 16.18 39.08 2.10
572 573 6.602009 TCGTTAGGACAAAGATGACATCTCTA 59.398 38.462 18.21 11.61 39.08 2.43
573 574 5.419155 TCGTTAGGACAAAGATGACATCTCT 59.581 40.000 18.21 12.54 39.08 3.10
574 575 5.651530 TCGTTAGGACAAAGATGACATCTC 58.348 41.667 18.21 6.18 39.08 2.75
575 576 5.661056 TCGTTAGGACAAAGATGACATCT 57.339 39.130 12.37 12.37 42.61 2.90
576 577 5.463724 GGATCGTTAGGACAAAGATGACATC 59.536 44.000 7.39 7.39 0.00 3.06
577 578 5.104941 TGGATCGTTAGGACAAAGATGACAT 60.105 40.000 0.00 0.00 0.00 3.06
578 579 4.221924 TGGATCGTTAGGACAAAGATGACA 59.778 41.667 0.00 0.00 0.00 3.58
579 580 4.755411 TGGATCGTTAGGACAAAGATGAC 58.245 43.478 0.00 0.00 0.00 3.06
580 581 5.175859 GTTGGATCGTTAGGACAAAGATGA 58.824 41.667 0.00 0.00 0.00 2.92
581 582 4.332819 GGTTGGATCGTTAGGACAAAGATG 59.667 45.833 0.00 0.00 0.00 2.90
582 583 4.019681 TGGTTGGATCGTTAGGACAAAGAT 60.020 41.667 0.00 0.00 0.00 2.40
583 584 3.325425 TGGTTGGATCGTTAGGACAAAGA 59.675 43.478 0.00 0.00 0.00 2.52
584 585 3.435671 GTGGTTGGATCGTTAGGACAAAG 59.564 47.826 0.00 0.00 0.00 2.77
585 586 3.404899 GTGGTTGGATCGTTAGGACAAA 58.595 45.455 0.00 0.00 0.00 2.83
586 587 2.610976 CGTGGTTGGATCGTTAGGACAA 60.611 50.000 0.00 0.00 0.00 3.18
587 588 1.067425 CGTGGTTGGATCGTTAGGACA 60.067 52.381 0.00 0.00 0.00 4.02
588 589 1.636988 CGTGGTTGGATCGTTAGGAC 58.363 55.000 0.00 0.00 0.00 3.85
598 599 2.610976 CGTGAACTAATCCGTGGTTGGA 60.611 50.000 0.00 0.00 43.58 3.53
617 618 1.075542 CCAACGCATCACATACACGT 58.924 50.000 0.00 0.00 38.88 4.49
618 619 1.355005 TCCAACGCATCACATACACG 58.645 50.000 0.00 0.00 0.00 4.49
620 621 2.677337 CACATCCAACGCATCACATACA 59.323 45.455 0.00 0.00 0.00 2.29
622 623 2.984562 ACACATCCAACGCATCACATA 58.015 42.857 0.00 0.00 0.00 2.29
694 695 4.473520 AGCGATTGGGGCAGGACG 62.474 66.667 0.00 0.00 0.00 4.79
757 760 2.977808 ACAGAGAAACAGAGGAGGGAA 58.022 47.619 0.00 0.00 0.00 3.97
1696 1710 1.517257 CATCCGAGTGCGTCTGACC 60.517 63.158 1.55 0.00 35.23 4.02
1710 1724 1.825474 TCGTCCTTCTCCTTGACATCC 59.175 52.381 0.00 0.00 0.00 3.51
1791 1805 4.329545 TCGGGGTTGGAGCTGCAC 62.330 66.667 7.72 3.17 0.00 4.57
2097 2111 4.736896 GTGACGGGGCTCACGACC 62.737 72.222 3.78 0.00 37.73 4.79
2165 2179 2.435938 CCACGTCCCAATCCACGG 60.436 66.667 0.00 0.00 40.43 4.94
2273 2287 2.482839 GCGATCTTCCCTTCTTCTCAGG 60.483 54.545 0.00 0.00 0.00 3.86
2274 2288 2.482839 GGCGATCTTCCCTTCTTCTCAG 60.483 54.545 0.00 0.00 0.00 3.35
2277 2291 0.461961 CGGCGATCTTCCCTTCTTCT 59.538 55.000 0.00 0.00 0.00 2.85
2278 2292 0.460311 TCGGCGATCTTCCCTTCTTC 59.540 55.000 4.99 0.00 0.00 2.87
2279 2293 0.461961 CTCGGCGATCTTCCCTTCTT 59.538 55.000 11.27 0.00 0.00 2.52
2285 2299 0.179097 AAAGAGCTCGGCGATCTTCC 60.179 55.000 21.88 8.47 46.98 3.46
2299 2313 1.077858 GGAGCAGGGGAGCAAAGAG 60.078 63.158 0.00 0.00 36.85 2.85
2361 2379 2.888594 TCAAATCTCACGGATCGAACC 58.111 47.619 0.70 0.70 32.76 3.62
2386 2404 3.243839 ACCTTGCATTCCACACATCAAAC 60.244 43.478 0.00 0.00 0.00 2.93
2391 2409 4.771577 TCATTAACCTTGCATTCCACACAT 59.228 37.500 0.00 0.00 0.00 3.21
2394 2413 5.999205 AATCATTAACCTTGCATTCCACA 57.001 34.783 0.00 0.00 0.00 4.17
2405 2424 4.881850 CCTGAGCGGTAAAATCATTAACCT 59.118 41.667 0.00 0.00 0.00 3.50
2568 2641 5.690865 AGGGGCTGAATACGAAATGAATTA 58.309 37.500 0.00 0.00 0.00 1.40
2588 2671 3.008266 AGCCATGAATGAAAAACCAAGGG 59.992 43.478 0.00 0.00 0.00 3.95
2620 2708 2.836360 GCGTCCGGATCCAGGGTA 60.836 66.667 7.81 0.00 0.00 3.69
2670 2758 4.499019 CCACCCCACGCATTATTATCAAAC 60.499 45.833 0.00 0.00 0.00 2.93
2674 2762 1.539827 GCCACCCCACGCATTATTATC 59.460 52.381 0.00 0.00 0.00 1.75
2728 2822 2.941064 ACGATTCAATGTGATGCAGGAG 59.059 45.455 0.00 0.00 0.00 3.69
2748 2842 2.668280 GGTTGAAGCAGGCGACGAC 61.668 63.158 0.00 0.00 0.00 4.34
2751 2845 1.901650 CTTCGGTTGAAGCAGGCGAC 61.902 60.000 0.00 0.00 44.70 5.19
2802 2896 4.028490 CCACCAGCCAACCGCCTA 62.028 66.667 0.00 0.00 38.78 3.93
2805 2899 4.643387 AGTCCACCAGCCAACCGC 62.643 66.667 0.00 0.00 37.98 5.68
2959 3066 3.125316 TGAAAAACTGGTCGTACGAAGG 58.875 45.455 21.39 14.74 0.00 3.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.