Multiple sequence alignment - TraesCS4A01G111300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G111300 chr4A 100.000 3321 0 0 1 3321 136274700 136278020 0.000000e+00 6133.0
1 TraesCS4A01G111300 chr4A 85.821 134 18 1 3146 3278 37069081 37069214 1.240000e-29 141.0
2 TraesCS4A01G111300 chr4D 90.881 2588 114 40 742 3269 337044537 337042012 0.000000e+00 3360.0
3 TraesCS4A01G111300 chr4D 91.155 554 30 6 1 547 337045241 337044700 0.000000e+00 734.0
4 TraesCS4A01G111300 chr4D 83.708 178 20 6 103 280 337050808 337050640 3.430000e-35 159.0
5 TraesCS4A01G111300 chr4D 83.333 114 16 3 3131 3244 460648549 460648659 5.860000e-18 102.0
6 TraesCS4A01G111300 chr4D 88.333 60 2 3 654 708 337044591 337044532 2.140000e-07 67.6
7 TraesCS4A01G111300 chr4B 90.548 2317 108 30 694 2965 415765590 415763340 0.000000e+00 2963.0
8 TraesCS4A01G111300 chr4B 87.612 896 73 15 2089 2965 415713255 415712379 0.000000e+00 1005.0
9 TraesCS4A01G111300 chr4B 89.435 549 25 9 1 548 415767300 415766784 0.000000e+00 662.0
10 TraesCS4A01G111300 chr4B 88.235 306 28 6 2967 3269 415763287 415762987 3.150000e-95 359.0
11 TraesCS4A01G111300 chr4B 87.829 304 31 4 2968 3269 415712324 415712025 5.270000e-93 351.0
12 TraesCS4A01G111300 chr4B 78.873 284 37 8 43 323 416105838 416105575 1.580000e-38 171.0
13 TraesCS4A01G111300 chr4B 82.456 114 13 5 3147 3256 35207020 35207130 3.530000e-15 93.5
14 TraesCS4A01G111300 chr3B 91.985 262 12 3 1367 1628 26533794 26533542 3.150000e-95 359.0
15 TraesCS4A01G111300 chr3B 87.571 177 10 5 1345 1521 809102889 809102725 9.400000e-46 195.0
16 TraesCS4A01G111300 chr6B 91.603 262 13 3 1367 1628 1947104 1946852 1.470000e-93 353.0
17 TraesCS4A01G111300 chr2D 90.909 264 12 4 1258 1521 596991386 596991135 8.820000e-91 344.0
18 TraesCS4A01G111300 chr7B 90.385 260 13 2 1258 1517 411414024 411414271 6.870000e-87 331.0
19 TraesCS4A01G111300 chr2B 89.773 264 15 2 1258 1521 598556351 598556100 8.880000e-86 327.0
20 TraesCS4A01G111300 chr3A 89.394 264 16 2 1258 1521 736252289 736252038 4.130000e-84 322.0
21 TraesCS4A01G111300 chr7A 85.714 140 18 2 3130 3269 289159689 289159826 2.670000e-31 147.0
22 TraesCS4A01G111300 chr2A 82.394 142 22 3 3128 3269 564263300 564263162 1.620000e-23 121.0
23 TraesCS4A01G111300 chr1A 85.714 112 14 2 3144 3255 22663376 22663485 2.090000e-22 117.0
24 TraesCS4A01G111300 chr5B 83.740 123 19 1 3145 3267 543868221 543868100 7.530000e-22 115.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G111300 chr4A 136274700 136278020 3320 False 6133.0 6133 100.0000 1 3321 1 chr4A.!!$F2 3320
1 TraesCS4A01G111300 chr4D 337042012 337045241 3229 True 1387.2 3360 90.1230 1 3269 3 chr4D.!!$R2 3268
2 TraesCS4A01G111300 chr4B 415762987 415767300 4313 True 1328.0 2963 89.4060 1 3269 3 chr4B.!!$R3 3268
3 TraesCS4A01G111300 chr4B 415712025 415713255 1230 True 678.0 1005 87.7205 2089 3269 2 chr4B.!!$R2 1180

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
639 704 0.037046 GTTGGCAATGCAAGGGAAGG 60.037 55.0 7.79 0.0 0.0 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2607 3774 0.180406 AACAGCTGGAAACACGAGGT 59.82 50.0 19.93 0.0 35.58 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
157 164 2.430610 GCGTGGAGATGGAGAGGCT 61.431 63.158 0.00 0.00 0.00 4.58
181 188 4.774660 AGTTCATGAAGGAGATGCTCAT 57.225 40.909 8.80 0.00 31.08 2.90
201 208 4.347292 TCATGATGAAGATGAAGGAGGAGG 59.653 45.833 0.00 0.00 0.00 4.30
202 209 3.999603 TGATGAAGATGAAGGAGGAGGA 58.000 45.455 0.00 0.00 0.00 3.71
285 292 3.266636 CACGGCAACTAACATCATGGTA 58.733 45.455 0.00 0.00 0.00 3.25
286 293 3.687212 CACGGCAACTAACATCATGGTAA 59.313 43.478 0.00 0.00 0.00 2.85
287 294 4.335315 CACGGCAACTAACATCATGGTAAT 59.665 41.667 0.00 0.00 0.00 1.89
288 295 4.574828 ACGGCAACTAACATCATGGTAATC 59.425 41.667 0.00 0.00 0.00 1.75
289 296 4.024048 CGGCAACTAACATCATGGTAATCC 60.024 45.833 0.00 0.00 0.00 3.01
325 332 0.254178 CTGTCCCATTCCCAGTCCTG 59.746 60.000 0.00 0.00 0.00 3.86
343 351 3.067106 CCTGTCAGCGACAATACAGTTT 58.933 45.455 11.49 0.00 42.26 2.66
386 394 5.144359 GGTTTCTACTGTATTTTGTGTGCG 58.856 41.667 0.00 0.00 0.00 5.34
387 395 4.398549 TTCTACTGTATTTTGTGTGCGC 57.601 40.909 0.00 0.00 0.00 6.09
447 455 4.407296 AGGCTGAAAATCCAGTAGAGTAGG 59.593 45.833 0.00 0.00 36.57 3.18
448 456 4.406003 GGCTGAAAATCCAGTAGAGTAGGA 59.594 45.833 0.00 0.00 36.57 2.94
449 457 5.452636 GGCTGAAAATCCAGTAGAGTAGGAG 60.453 48.000 0.00 0.00 36.57 3.69
450 458 5.128008 GCTGAAAATCCAGTAGAGTAGGAGT 59.872 44.000 0.00 0.00 36.57 3.85
486 494 7.228507 TGTGCTTCACTGTATCTTGTTTTACAT 59.771 33.333 0.00 0.00 35.11 2.29
552 617 5.747197 CCATGTACCGTAGCTAGTAGTTTTG 59.253 44.000 0.00 0.00 0.00 2.44
562 627 8.182881 CGTAGCTAGTAGTTTTGAATCAGTAGT 58.817 37.037 0.00 0.00 0.00 2.73
565 630 8.688151 AGCTAGTAGTTTTGAATCAGTAGTAGG 58.312 37.037 0.00 0.00 0.00 3.18
566 631 8.684520 GCTAGTAGTTTTGAATCAGTAGTAGGA 58.315 37.037 0.00 0.00 0.00 2.94
606 671 4.269603 GTGTCTGGATCGAGTTGAATCATG 59.730 45.833 4.53 0.00 0.00 3.07
607 672 4.160252 TGTCTGGATCGAGTTGAATCATGA 59.840 41.667 0.00 0.00 0.00 3.07
608 673 5.111989 GTCTGGATCGAGTTGAATCATGAA 58.888 41.667 0.00 0.00 0.00 2.57
609 674 5.233902 GTCTGGATCGAGTTGAATCATGAAG 59.766 44.000 0.00 0.00 0.00 3.02
610 675 4.445453 TGGATCGAGTTGAATCATGAAGG 58.555 43.478 0.00 0.00 0.00 3.46
611 676 4.162131 TGGATCGAGTTGAATCATGAAGGA 59.838 41.667 0.00 0.00 0.00 3.36
612 677 5.118990 GGATCGAGTTGAATCATGAAGGAA 58.881 41.667 0.00 0.00 0.00 3.36
613 678 5.236047 GGATCGAGTTGAATCATGAAGGAAG 59.764 44.000 0.00 0.00 0.00 3.46
614 679 3.935203 TCGAGTTGAATCATGAAGGAAGC 59.065 43.478 0.00 0.00 0.00 3.86
615 680 3.937706 CGAGTTGAATCATGAAGGAAGCT 59.062 43.478 0.00 0.00 0.00 3.74
616 681 4.201792 CGAGTTGAATCATGAAGGAAGCTG 60.202 45.833 0.00 0.00 0.00 4.24
617 682 4.914983 AGTTGAATCATGAAGGAAGCTGA 58.085 39.130 0.00 0.00 0.00 4.26
618 683 4.942483 AGTTGAATCATGAAGGAAGCTGAG 59.058 41.667 0.00 0.00 0.00 3.35
619 684 4.831674 TGAATCATGAAGGAAGCTGAGA 57.168 40.909 0.00 0.00 0.00 3.27
620 685 4.767478 TGAATCATGAAGGAAGCTGAGAG 58.233 43.478 0.00 0.00 0.00 3.20
621 686 4.224594 TGAATCATGAAGGAAGCTGAGAGT 59.775 41.667 0.00 0.00 0.00 3.24
622 687 4.840716 ATCATGAAGGAAGCTGAGAGTT 57.159 40.909 0.00 0.00 0.00 3.01
623 688 3.935315 TCATGAAGGAAGCTGAGAGTTG 58.065 45.455 0.00 0.00 0.00 3.16
624 689 2.847327 TGAAGGAAGCTGAGAGTTGG 57.153 50.000 0.00 0.00 0.00 3.77
625 690 1.271054 TGAAGGAAGCTGAGAGTTGGC 60.271 52.381 0.00 0.00 0.00 4.52
626 691 0.767375 AAGGAAGCTGAGAGTTGGCA 59.233 50.000 0.00 0.00 0.00 4.92
627 692 0.767375 AGGAAGCTGAGAGTTGGCAA 59.233 50.000 0.00 0.00 0.00 4.52
628 693 1.353694 AGGAAGCTGAGAGTTGGCAAT 59.646 47.619 1.92 0.00 0.00 3.56
629 694 1.471684 GGAAGCTGAGAGTTGGCAATG 59.528 52.381 1.92 0.00 0.00 2.82
630 695 0.886563 AAGCTGAGAGTTGGCAATGC 59.113 50.000 1.92 0.00 0.00 3.56
631 696 0.251033 AGCTGAGAGTTGGCAATGCA 60.251 50.000 7.79 0.00 0.00 3.96
632 697 0.599558 GCTGAGAGTTGGCAATGCAA 59.400 50.000 7.79 0.00 0.00 4.08
633 698 1.402456 GCTGAGAGTTGGCAATGCAAG 60.402 52.381 7.79 0.00 0.00 4.01
634 699 1.201647 CTGAGAGTTGGCAATGCAAGG 59.798 52.381 7.79 0.00 0.00 3.61
635 700 0.529378 GAGAGTTGGCAATGCAAGGG 59.471 55.000 7.79 0.00 0.00 3.95
636 701 0.112995 AGAGTTGGCAATGCAAGGGA 59.887 50.000 7.79 0.00 0.00 4.20
637 702 0.968405 GAGTTGGCAATGCAAGGGAA 59.032 50.000 7.79 0.00 0.00 3.97
638 703 0.971386 AGTTGGCAATGCAAGGGAAG 59.029 50.000 7.79 0.00 0.00 3.46
639 704 0.037046 GTTGGCAATGCAAGGGAAGG 60.037 55.000 7.79 0.00 0.00 3.46
640 705 1.193462 TTGGCAATGCAAGGGAAGGG 61.193 55.000 7.79 0.00 0.00 3.95
641 706 1.305213 GGCAATGCAAGGGAAGGGA 60.305 57.895 7.79 0.00 0.00 4.20
642 707 0.904394 GGCAATGCAAGGGAAGGGAA 60.904 55.000 7.79 0.00 0.00 3.97
643 708 0.533951 GCAATGCAAGGGAAGGGAAG 59.466 55.000 0.00 0.00 0.00 3.46
644 709 1.188863 CAATGCAAGGGAAGGGAAGG 58.811 55.000 0.00 0.00 0.00 3.46
645 710 0.041684 AATGCAAGGGAAGGGAAGGG 59.958 55.000 0.00 0.00 0.00 3.95
646 711 0.850883 ATGCAAGGGAAGGGAAGGGA 60.851 55.000 0.00 0.00 0.00 4.20
647 712 1.071314 TGCAAGGGAAGGGAAGGGAA 61.071 55.000 0.00 0.00 0.00 3.97
648 713 0.323816 GCAAGGGAAGGGAAGGGAAG 60.324 60.000 0.00 0.00 0.00 3.46
649 714 0.332972 CAAGGGAAGGGAAGGGAAGG 59.667 60.000 0.00 0.00 0.00 3.46
650 715 0.851332 AAGGGAAGGGAAGGGAAGGG 60.851 60.000 0.00 0.00 0.00 3.95
651 716 1.230182 GGGAAGGGAAGGGAAGGGA 60.230 63.158 0.00 0.00 0.00 4.20
652 717 0.849540 GGGAAGGGAAGGGAAGGGAA 60.850 60.000 0.00 0.00 0.00 3.97
681 791 6.493802 GGATCCCCAAAATTCCTAATCCTAAC 59.506 42.308 0.00 0.00 0.00 2.34
731 1846 2.896801 GCACACACAAGAGGCACGG 61.897 63.158 0.00 0.00 0.00 4.94
732 1847 1.523711 CACACACAAGAGGCACGGT 60.524 57.895 0.00 0.00 0.00 4.83
733 1848 1.095228 CACACACAAGAGGCACGGTT 61.095 55.000 0.00 0.00 0.00 4.44
734 1849 1.095228 ACACACAAGAGGCACGGTTG 61.095 55.000 0.00 0.00 33.17 3.77
735 1850 1.525995 ACACAAGAGGCACGGTTGG 60.526 57.895 0.00 0.00 31.58 3.77
800 1915 4.838152 ACGCACCGCTATGGGCTG 62.838 66.667 1.65 0.00 44.64 4.85
935 2064 1.154205 CCGTCACTCGCATTGATCCC 61.154 60.000 0.00 0.00 38.35 3.85
1261 2390 0.179097 CTACCTCAAGAAGCGCCTCC 60.179 60.000 2.29 0.00 0.00 4.30
1401 2530 4.773117 GACCGCCAGGACGACGAC 62.773 72.222 0.00 0.00 41.02 4.34
1406 2535 3.054503 CCAGGACGACGACGAGGT 61.055 66.667 15.32 0.00 42.66 3.85
1408 2537 3.054503 AGGACGACGACGAGGTGG 61.055 66.667 15.32 0.00 42.66 4.61
1409 2538 3.052082 GGACGACGACGAGGTGGA 61.052 66.667 15.32 0.00 42.66 4.02
1410 2539 2.479650 GACGACGACGAGGTGGAG 59.520 66.667 15.32 0.00 42.66 3.86
1411 2540 2.031516 GACGACGACGAGGTGGAGA 61.032 63.158 15.32 0.00 42.66 3.71
1412 2541 2.238071 GACGACGACGAGGTGGAGAC 62.238 65.000 15.32 0.00 42.66 3.36
1413 2542 2.876219 GACGACGAGGTGGAGACC 59.124 66.667 0.00 0.00 43.52 3.85
1423 2552 3.144285 TGGAGACCGACCACAACC 58.856 61.111 0.00 0.00 32.03 3.77
1424 2553 2.048503 GGAGACCGACCACAACCG 60.049 66.667 0.00 0.00 0.00 4.44
1425 2554 2.737376 GAGACCGACCACAACCGC 60.737 66.667 0.00 0.00 0.00 5.68
1426 2555 3.222354 GAGACCGACCACAACCGCT 62.222 63.158 0.00 0.00 0.00 5.52
1617 2755 2.169789 CAAGCAGATGGAGGCGACG 61.170 63.158 0.00 0.00 34.54 5.12
1689 2842 2.501610 GTCGCCATCTCCACCTCC 59.498 66.667 0.00 0.00 0.00 4.30
1752 2905 1.511305 CGCCGATACACACACCTCT 59.489 57.895 0.00 0.00 0.00 3.69
1789 2942 4.874977 GCGGCCTAGTCGGTGAGC 62.875 72.222 0.00 0.00 34.25 4.26
1797 2950 2.098443 CCTAGTCGGTGAGCTTTCTCTC 59.902 54.545 0.00 0.00 40.03 3.20
1825 2978 0.917533 AGCCCATCTGCTCATTGTCT 59.082 50.000 0.00 0.00 36.75 3.41
1897 3050 4.982999 CAAATCTGCAATTCCTGAGACTG 58.017 43.478 0.00 0.00 0.00 3.51
1898 3051 4.564782 AATCTGCAATTCCTGAGACTGA 57.435 40.909 0.00 0.00 0.00 3.41
1899 3052 3.606595 TCTGCAATTCCTGAGACTGAG 57.393 47.619 0.00 0.00 0.00 3.35
1900 3053 3.168292 TCTGCAATTCCTGAGACTGAGA 58.832 45.455 0.00 0.00 0.00 3.27
1907 3060 1.193323 CCTGAGACTGAGAGCACCAT 58.807 55.000 0.00 0.00 0.00 3.55
1917 3070 4.346127 ACTGAGAGCACCATCTTATGCATA 59.654 41.667 1.16 1.16 44.59 3.14
1979 3132 7.977789 TCATTATTGCTAGAAAACAGTGTGA 57.022 32.000 0.00 0.00 0.00 3.58
1980 3133 8.565896 TCATTATTGCTAGAAAACAGTGTGAT 57.434 30.769 0.00 0.00 0.00 3.06
2004 3157 2.237392 AGCCTCAAATTAGCCTCGAGTT 59.763 45.455 12.31 1.59 0.00 3.01
2015 3168 7.897575 ATTAGCCTCGAGTTATTCATTCATC 57.102 36.000 12.31 0.00 0.00 2.92
2016 3169 5.282055 AGCCTCGAGTTATTCATTCATCA 57.718 39.130 12.31 0.00 0.00 3.07
2017 3170 5.862845 AGCCTCGAGTTATTCATTCATCAT 58.137 37.500 12.31 0.00 0.00 2.45
2163 3322 7.794041 AGATTTTAGAGAGATGAGCACTGAAT 58.206 34.615 0.00 0.00 0.00 2.57
2164 3323 8.922237 AGATTTTAGAGAGATGAGCACTGAATA 58.078 33.333 0.00 0.00 0.00 1.75
2165 3324 9.539825 GATTTTAGAGAGATGAGCACTGAATAA 57.460 33.333 0.00 0.00 0.00 1.40
2166 3325 8.939201 TTTTAGAGAGATGAGCACTGAATAAG 57.061 34.615 0.00 0.00 0.00 1.73
2188 3350 9.831737 ATAAGTACTGTTAACAAGTACTACGTG 57.168 33.333 30.06 13.57 45.30 4.49
2189 3351 7.264373 AGTACTGTTAACAAGTACTACGTGT 57.736 36.000 29.45 16.62 44.54 4.49
2190 3352 8.378172 AGTACTGTTAACAAGTACTACGTGTA 57.622 34.615 29.45 15.88 44.54 2.90
2191 3353 8.499162 AGTACTGTTAACAAGTACTACGTGTAG 58.501 37.037 29.45 12.07 44.54 2.74
2193 3355 8.378172 ACTGTTAACAAGTACTACGTGTAGTA 57.622 34.615 14.30 14.30 43.98 1.82
2194 3356 9.003658 ACTGTTAACAAGTACTACGTGTAGTAT 57.996 33.333 19.61 8.69 46.57 2.12
2212 3374 9.811995 GTGTAGTATTAACCTGTTCATCATGTA 57.188 33.333 0.00 0.00 0.00 2.29
2253 3415 6.976925 GCTTTGAACAATTAGGAATCATCTGG 59.023 38.462 0.00 0.00 0.00 3.86
2265 3427 4.384537 GGAATCATCTGGTCAGGATTCACA 60.385 45.833 20.70 0.00 44.57 3.58
2310 3473 3.351740 TGTGCTTTTTGACAGAGGAACA 58.648 40.909 0.00 0.00 0.00 3.18
2415 3578 1.280710 ACGTGATGATGCCCTTACCAA 59.719 47.619 0.00 0.00 0.00 3.67
2482 3645 5.609423 AGGATAGCACATGATGAGACTTTC 58.391 41.667 0.00 0.00 0.00 2.62
2607 3774 6.091577 CACACGGTAATTTACTGCTGTAATCA 59.908 38.462 15.83 3.99 38.31 2.57
2611 3778 6.018994 CGGTAATTTACTGCTGTAATCACCTC 60.019 42.308 23.72 12.84 38.31 3.85
2667 3842 7.795482 TCGGTAAATATGATGTTTTGGGTAG 57.205 36.000 0.00 0.00 0.00 3.18
2668 3843 6.768861 TCGGTAAATATGATGTTTTGGGTAGG 59.231 38.462 0.00 0.00 0.00 3.18
2669 3844 6.768861 CGGTAAATATGATGTTTTGGGTAGGA 59.231 38.462 0.00 0.00 0.00 2.94
2696 3871 0.034670 ATGAGTTCCAGAAGGCTGCC 60.035 55.000 11.65 11.65 40.91 4.85
2697 3872 1.743252 GAGTTCCAGAAGGCTGCCG 60.743 63.158 13.96 0.00 40.91 5.69
2699 3874 2.032528 TTCCAGAAGGCTGCCGTG 59.967 61.111 12.97 11.56 40.91 4.94
2854 4029 3.751175 TCTCTTAACCTGGAAAATGCACG 59.249 43.478 0.00 0.00 0.00 5.34
2918 4101 0.877743 GTTTCAGAAGCTCTGGCACC 59.122 55.000 11.63 0.00 44.39 5.01
2929 4112 2.362077 GCTCTGGCACCTTTTCTTTTGA 59.638 45.455 0.00 0.00 38.54 2.69
2930 4113 3.006217 GCTCTGGCACCTTTTCTTTTGAT 59.994 43.478 0.00 0.00 38.54 2.57
2944 4127 5.505181 TCTTTTGATGGGTAGAAGCTCTT 57.495 39.130 0.00 0.00 0.00 2.85
2959 4142 2.880890 AGCTCTTGCACTTTGTTACTGG 59.119 45.455 0.00 0.00 42.74 4.00
2965 4148 1.618343 GCACTTTGTTACTGGGCCATT 59.382 47.619 6.72 3.41 0.00 3.16
3020 4257 6.948309 GGTGGGTGCTTTTGATATATATTCCT 59.052 38.462 0.00 0.00 0.00 3.36
3090 4327 4.360951 ACTTCCAAGTTTCGGGTAATCA 57.639 40.909 0.00 0.00 35.21 2.57
3094 4331 4.013728 TCCAAGTTTCGGGTAATCATTGG 58.986 43.478 0.00 0.00 37.80 3.16
3096 4333 3.080300 AGTTTCGGGTAATCATTGGCA 57.920 42.857 0.00 0.00 0.00 4.92
3112 4349 9.610705 AATCATTGGCAGATGTTAGCTATATAG 57.389 33.333 5.30 5.30 0.00 1.31
3113 4350 8.138928 TCATTGGCAGATGTTAGCTATATAGT 57.861 34.615 11.38 1.56 0.00 2.12
3114 4351 9.255029 TCATTGGCAGATGTTAGCTATATAGTA 57.745 33.333 11.38 0.67 0.00 1.82
3234 4481 2.764572 CCAAATCCGTAGACCACCTAGT 59.235 50.000 0.00 0.00 0.00 2.57
3251 4498 3.181499 CCTAGTGACGACTACGAGCATTT 60.181 47.826 0.00 0.00 42.66 2.32
3259 4506 3.486108 CGACTACGAGCATTTAAGCGAAT 59.514 43.478 0.00 0.00 42.66 3.34
3283 4530 2.862436 CGCAGCGCATCAGAACAA 59.138 55.556 11.47 0.00 0.00 2.83
3284 4531 1.510623 CGCAGCGCATCAGAACAAC 60.511 57.895 11.47 0.00 0.00 3.32
3285 4532 1.575922 GCAGCGCATCAGAACAACA 59.424 52.632 11.47 0.00 0.00 3.33
3286 4533 0.040157 GCAGCGCATCAGAACAACAA 60.040 50.000 11.47 0.00 0.00 2.83
3287 4534 1.678360 CAGCGCATCAGAACAACAAC 58.322 50.000 11.47 0.00 0.00 3.32
3288 4535 1.002576 CAGCGCATCAGAACAACAACA 60.003 47.619 11.47 0.00 0.00 3.33
3289 4536 1.265095 AGCGCATCAGAACAACAACAG 59.735 47.619 11.47 0.00 0.00 3.16
3290 4537 1.678360 CGCATCAGAACAACAACAGC 58.322 50.000 0.00 0.00 0.00 4.40
3291 4538 1.664016 CGCATCAGAACAACAACAGCC 60.664 52.381 0.00 0.00 0.00 4.85
3292 4539 1.664016 GCATCAGAACAACAACAGCCG 60.664 52.381 0.00 0.00 0.00 5.52
3293 4540 1.603802 CATCAGAACAACAACAGCCGT 59.396 47.619 0.00 0.00 0.00 5.68
3294 4541 1.295792 TCAGAACAACAACAGCCGTC 58.704 50.000 0.00 0.00 0.00 4.79
3295 4542 1.013596 CAGAACAACAACAGCCGTCA 58.986 50.000 0.00 0.00 0.00 4.35
3296 4543 1.400142 CAGAACAACAACAGCCGTCAA 59.600 47.619 0.00 0.00 0.00 3.18
3297 4544 2.033299 CAGAACAACAACAGCCGTCAAT 59.967 45.455 0.00 0.00 0.00 2.57
3298 4545 3.249799 CAGAACAACAACAGCCGTCAATA 59.750 43.478 0.00 0.00 0.00 1.90
3299 4546 3.880490 AGAACAACAACAGCCGTCAATAA 59.120 39.130 0.00 0.00 0.00 1.40
3300 4547 4.336993 AGAACAACAACAGCCGTCAATAAA 59.663 37.500 0.00 0.00 0.00 1.40
3301 4548 4.223320 ACAACAACAGCCGTCAATAAAG 57.777 40.909 0.00 0.00 0.00 1.85
3302 4549 3.880490 ACAACAACAGCCGTCAATAAAGA 59.120 39.130 0.00 0.00 0.00 2.52
3303 4550 4.024048 ACAACAACAGCCGTCAATAAAGAG 60.024 41.667 0.00 0.00 0.00 2.85
3304 4551 3.740115 ACAACAGCCGTCAATAAAGAGT 58.260 40.909 0.00 0.00 0.00 3.24
3305 4552 4.890088 ACAACAGCCGTCAATAAAGAGTA 58.110 39.130 0.00 0.00 0.00 2.59
3306 4553 4.929808 ACAACAGCCGTCAATAAAGAGTAG 59.070 41.667 0.00 0.00 0.00 2.57
3307 4554 3.522553 ACAGCCGTCAATAAAGAGTAGC 58.477 45.455 0.00 0.00 0.00 3.58
3308 4555 3.056107 ACAGCCGTCAATAAAGAGTAGCA 60.056 43.478 0.00 0.00 0.00 3.49
3309 4556 4.122776 CAGCCGTCAATAAAGAGTAGCAT 58.877 43.478 0.00 0.00 0.00 3.79
3310 4557 5.163447 ACAGCCGTCAATAAAGAGTAGCATA 60.163 40.000 0.00 0.00 0.00 3.14
3311 4558 5.403766 CAGCCGTCAATAAAGAGTAGCATAG 59.596 44.000 0.00 0.00 0.00 2.23
3312 4559 5.302059 AGCCGTCAATAAAGAGTAGCATAGA 59.698 40.000 0.00 0.00 0.00 1.98
3313 4560 6.015010 AGCCGTCAATAAAGAGTAGCATAGAT 60.015 38.462 0.00 0.00 0.00 1.98
3314 4561 6.647067 GCCGTCAATAAAGAGTAGCATAGATT 59.353 38.462 0.00 0.00 0.00 2.40
3315 4562 7.359598 GCCGTCAATAAAGAGTAGCATAGATTG 60.360 40.741 0.00 0.00 0.00 2.67
3316 4563 7.867909 CCGTCAATAAAGAGTAGCATAGATTGA 59.132 37.037 0.00 0.00 31.47 2.57
3317 4564 9.249457 CGTCAATAAAGAGTAGCATAGATTGAA 57.751 33.333 0.00 0.00 34.75 2.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 1.324005 CGACCACCTCCTCCTCCTTC 61.324 65.000 0.00 0.00 0.00 3.46
85 92 2.049156 CCAGCTTCGTCACGCTCA 60.049 61.111 0.00 0.00 33.45 4.26
86 93 2.049063 ACCAGCTTCGTCACGCTC 60.049 61.111 0.00 0.00 33.45 5.03
87 94 2.356313 CACCAGCTTCGTCACGCT 60.356 61.111 0.00 0.00 36.83 5.07
88 95 3.414700 CCACCAGCTTCGTCACGC 61.415 66.667 0.00 0.00 0.00 5.34
89 96 3.414700 GCCACCAGCTTCGTCACG 61.415 66.667 0.00 0.00 38.99 4.35
90 97 3.414700 CGCCACCAGCTTCGTCAC 61.415 66.667 0.00 0.00 40.39 3.67
157 164 4.019950 TGAGCATCTCCTTCATGAACTTGA 60.020 41.667 3.38 3.21 34.92 3.02
181 188 3.966006 CTCCTCCTCCTTCATCTTCATCA 59.034 47.826 0.00 0.00 0.00 3.07
236 243 0.539051 CCTCATTCTCCGCCTTCACT 59.461 55.000 0.00 0.00 0.00 3.41
285 292 8.743714 GGACAGAGATCATTTAGTTTTTGGATT 58.256 33.333 0.00 0.00 0.00 3.01
286 293 7.340487 GGGACAGAGATCATTTAGTTTTTGGAT 59.660 37.037 0.00 0.00 0.00 3.41
287 294 6.659242 GGGACAGAGATCATTTAGTTTTTGGA 59.341 38.462 0.00 0.00 0.00 3.53
288 295 6.434028 TGGGACAGAGATCATTTAGTTTTTGG 59.566 38.462 0.00 0.00 0.00 3.28
289 296 7.452880 TGGGACAGAGATCATTTAGTTTTTG 57.547 36.000 0.00 0.00 0.00 2.44
308 315 0.253327 GACAGGACTGGGAATGGGAC 59.747 60.000 4.14 0.00 34.19 4.46
343 351 7.497909 AGAAACCAGACGTAAGATGAAGAAAAA 59.502 33.333 0.00 0.00 43.62 1.94
352 360 5.979288 ACAGTAGAAACCAGACGTAAGAT 57.021 39.130 0.00 0.00 43.62 2.40
361 369 6.142817 GCACACAAAATACAGTAGAAACCAG 58.857 40.000 0.00 0.00 0.00 4.00
386 394 1.380380 CCAAATCCCCTGTCCCTGC 60.380 63.158 0.00 0.00 0.00 4.85
387 395 0.034089 GACCAAATCCCCTGTCCCTG 60.034 60.000 0.00 0.00 0.00 4.45
422 430 6.098409 CCTACTCTACTGGATTTTCAGCCTAA 59.902 42.308 0.00 0.00 38.26 2.69
447 455 5.175856 CAGTGAAGCACAAACACTACTACTC 59.824 44.000 0.00 0.00 41.93 2.59
448 456 5.050490 CAGTGAAGCACAAACACTACTACT 58.950 41.667 0.00 0.00 41.93 2.57
449 457 4.809426 ACAGTGAAGCACAAACACTACTAC 59.191 41.667 0.00 0.00 41.93 2.73
450 458 5.018539 ACAGTGAAGCACAAACACTACTA 57.981 39.130 0.00 0.00 41.93 1.82
486 494 7.717875 ACCACAAATGCAGTAAGTAAAACTAGA 59.282 33.333 0.00 0.00 0.00 2.43
496 504 5.334879 GGAGTACAACCACAAATGCAGTAAG 60.335 44.000 0.00 0.00 0.00 2.34
589 654 4.697514 TCCTTCATGATTCAACTCGATCC 58.302 43.478 0.00 0.00 0.00 3.36
606 671 1.271054 TGCCAACTCTCAGCTTCCTTC 60.271 52.381 0.00 0.00 0.00 3.46
607 672 0.767375 TGCCAACTCTCAGCTTCCTT 59.233 50.000 0.00 0.00 0.00 3.36
608 673 0.767375 TTGCCAACTCTCAGCTTCCT 59.233 50.000 0.00 0.00 0.00 3.36
609 674 1.471684 CATTGCCAACTCTCAGCTTCC 59.528 52.381 0.00 0.00 0.00 3.46
610 675 1.135460 GCATTGCCAACTCTCAGCTTC 60.135 52.381 0.00 0.00 0.00 3.86
611 676 0.886563 GCATTGCCAACTCTCAGCTT 59.113 50.000 0.00 0.00 0.00 3.74
612 677 0.251033 TGCATTGCCAACTCTCAGCT 60.251 50.000 6.12 0.00 0.00 4.24
613 678 0.599558 TTGCATTGCCAACTCTCAGC 59.400 50.000 6.12 0.00 0.00 4.26
614 679 1.201647 CCTTGCATTGCCAACTCTCAG 59.798 52.381 6.12 0.00 0.00 3.35
615 680 1.250328 CCTTGCATTGCCAACTCTCA 58.750 50.000 6.12 0.00 0.00 3.27
616 681 0.529378 CCCTTGCATTGCCAACTCTC 59.471 55.000 6.12 0.00 0.00 3.20
617 682 0.112995 TCCCTTGCATTGCCAACTCT 59.887 50.000 6.12 0.00 0.00 3.24
618 683 0.968405 TTCCCTTGCATTGCCAACTC 59.032 50.000 6.12 0.00 0.00 3.01
619 684 0.971386 CTTCCCTTGCATTGCCAACT 59.029 50.000 6.12 0.00 0.00 3.16
620 685 0.037046 CCTTCCCTTGCATTGCCAAC 60.037 55.000 6.12 0.00 0.00 3.77
621 686 1.193462 CCCTTCCCTTGCATTGCCAA 61.193 55.000 6.12 0.08 0.00 4.52
622 687 1.610086 CCCTTCCCTTGCATTGCCA 60.610 57.895 6.12 0.00 0.00 4.92
623 688 0.904394 TTCCCTTCCCTTGCATTGCC 60.904 55.000 6.12 0.00 0.00 4.52
624 689 0.533951 CTTCCCTTCCCTTGCATTGC 59.466 55.000 0.46 0.46 0.00 3.56
625 690 1.188863 CCTTCCCTTCCCTTGCATTG 58.811 55.000 0.00 0.00 0.00 2.82
626 691 0.041684 CCCTTCCCTTCCCTTGCATT 59.958 55.000 0.00 0.00 0.00 3.56
627 692 0.850883 TCCCTTCCCTTCCCTTGCAT 60.851 55.000 0.00 0.00 0.00 3.96
628 693 1.071314 TTCCCTTCCCTTCCCTTGCA 61.071 55.000 0.00 0.00 0.00 4.08
629 694 0.323816 CTTCCCTTCCCTTCCCTTGC 60.324 60.000 0.00 0.00 0.00 4.01
630 695 0.332972 CCTTCCCTTCCCTTCCCTTG 59.667 60.000 0.00 0.00 0.00 3.61
631 696 0.851332 CCCTTCCCTTCCCTTCCCTT 60.851 60.000 0.00 0.00 0.00 3.95
632 697 1.230314 CCCTTCCCTTCCCTTCCCT 60.230 63.158 0.00 0.00 0.00 4.20
633 698 0.849540 TTCCCTTCCCTTCCCTTCCC 60.850 60.000 0.00 0.00 0.00 3.97
634 699 0.626382 CTTCCCTTCCCTTCCCTTCC 59.374 60.000 0.00 0.00 0.00 3.46
635 700 1.670059 TCTTCCCTTCCCTTCCCTTC 58.330 55.000 0.00 0.00 0.00 3.46
636 701 1.925959 CATCTTCCCTTCCCTTCCCTT 59.074 52.381 0.00 0.00 0.00 3.95
637 702 1.601248 CATCTTCCCTTCCCTTCCCT 58.399 55.000 0.00 0.00 0.00 4.20
638 703 0.553333 CCATCTTCCCTTCCCTTCCC 59.447 60.000 0.00 0.00 0.00 3.97
639 704 1.596496 TCCATCTTCCCTTCCCTTCC 58.404 55.000 0.00 0.00 0.00 3.46
640 705 2.107378 GGATCCATCTTCCCTTCCCTTC 59.893 54.545 6.95 0.00 0.00 3.46
641 706 2.139382 GGATCCATCTTCCCTTCCCTT 58.861 52.381 6.95 0.00 0.00 3.95
642 707 1.826447 GGATCCATCTTCCCTTCCCT 58.174 55.000 6.95 0.00 0.00 4.20
649 714 3.643320 GGAATTTTGGGGATCCATCTTCC 59.357 47.826 15.23 12.06 43.63 3.46
650 715 4.550669 AGGAATTTTGGGGATCCATCTTC 58.449 43.478 15.23 7.06 43.63 2.87
651 716 4.632105 AGGAATTTTGGGGATCCATCTT 57.368 40.909 15.23 0.00 43.63 2.40
652 717 5.749422 TTAGGAATTTTGGGGATCCATCT 57.251 39.130 15.23 0.00 43.63 2.90
681 791 2.276732 TCAAACAAAGCCTCTCCTGG 57.723 50.000 0.00 0.00 0.00 4.45
691 1795 3.122297 TGCGCCTTGATTTCAAACAAAG 58.878 40.909 4.18 0.00 35.15 2.77
692 1796 3.122297 CTGCGCCTTGATTTCAAACAAA 58.878 40.909 4.18 0.00 35.15 2.83
723 1838 2.983592 CCAACCCAACCGTGCCTC 60.984 66.667 0.00 0.00 0.00 4.70
731 1846 1.037493 GAGGTTTGGTCCAACCCAAC 58.963 55.000 19.59 9.73 44.03 3.77
732 1847 0.105913 GGAGGTTTGGTCCAACCCAA 60.106 55.000 19.59 0.00 42.69 4.12
733 1848 1.539665 GGAGGTTTGGTCCAACCCA 59.460 57.895 19.59 0.00 37.50 4.51
734 1849 1.228769 GGGAGGTTTGGTCCAACCC 60.229 63.158 10.20 10.20 37.50 4.11
735 1850 1.228769 GGGGAGGTTTGGTCCAACC 60.229 63.158 2.98 9.26 39.22 3.77
759 1874 2.364317 CTCGCAGGGAAGGGGAGA 60.364 66.667 0.00 0.00 45.23 3.71
793 1908 3.849951 CCGTCCTACGCAGCCCAT 61.850 66.667 0.00 0.00 40.91 4.00
800 1915 1.770085 CGACTCCTACCGTCCTACGC 61.770 65.000 0.00 0.00 40.91 4.42
921 2050 0.467384 CCTGAGGGATCAATGCGAGT 59.533 55.000 0.00 0.00 33.58 4.18
935 2064 2.183811 CTGCCGTCTGAGCCTGAG 59.816 66.667 0.00 0.00 0.00 3.35
987 2116 3.567797 GACATCGGCGCTGGCTTC 61.568 66.667 17.88 6.26 39.81 3.86
1401 2530 2.675423 TGGTCGGTCTCCACCTCG 60.675 66.667 8.16 0.00 41.17 4.63
1406 2535 2.863346 CGGTTGTGGTCGGTCTCCA 61.863 63.158 0.00 0.00 0.00 3.86
1408 2537 2.737376 GCGGTTGTGGTCGGTCTC 60.737 66.667 0.00 0.00 0.00 3.36
1409 2538 3.222354 GAGCGGTTGTGGTCGGTCT 62.222 63.158 7.52 0.00 46.30 3.85
1410 2539 2.737376 GAGCGGTTGTGGTCGGTC 60.737 66.667 0.00 0.00 44.46 4.79
1411 2540 3.222354 GAGAGCGGTTGTGGTCGGT 62.222 63.158 0.00 0.00 41.16 4.69
1412 2541 2.432628 GAGAGCGGTTGTGGTCGG 60.433 66.667 0.00 0.00 41.16 4.79
1413 2542 2.432628 GGAGAGCGGTTGTGGTCG 60.433 66.667 0.00 0.00 41.16 4.79
1414 2543 2.047179 GGGAGAGCGGTTGTGGTC 60.047 66.667 0.00 0.00 36.63 4.02
1415 2544 3.637273 GGGGAGAGCGGTTGTGGT 61.637 66.667 0.00 0.00 0.00 4.16
1416 2545 3.322466 AGGGGAGAGCGGTTGTGG 61.322 66.667 0.00 0.00 0.00 4.17
1417 2546 1.541310 TACAGGGGAGAGCGGTTGTG 61.541 60.000 0.00 0.00 0.00 3.33
1418 2547 1.229082 TACAGGGGAGAGCGGTTGT 60.229 57.895 0.00 0.00 0.00 3.32
1419 2548 1.218316 GTACAGGGGAGAGCGGTTG 59.782 63.158 0.00 0.00 0.00 3.77
1420 2549 1.988406 GGTACAGGGGAGAGCGGTT 60.988 63.158 0.00 0.00 0.00 4.44
1421 2550 2.363925 GGTACAGGGGAGAGCGGT 60.364 66.667 0.00 0.00 0.00 5.68
1422 2551 3.528370 CGGTACAGGGGAGAGCGG 61.528 72.222 0.00 0.00 0.00 5.52
1423 2552 4.208686 GCGGTACAGGGGAGAGCG 62.209 72.222 0.00 0.00 37.16 5.03
1424 2553 4.208686 CGCGGTACAGGGGAGAGC 62.209 72.222 0.00 0.00 0.00 4.09
1425 2554 2.439701 TCGCGGTACAGGGGAGAG 60.440 66.667 6.13 0.00 0.00 3.20
1426 2555 2.753043 GTCGCGGTACAGGGGAGA 60.753 66.667 6.13 0.00 0.00 3.71
1637 2790 0.732196 CATGCGCTCGATCTCTAGGC 60.732 60.000 9.73 0.00 0.00 3.93
1689 2842 1.355971 CTGGGGTTTGTGTATCGTCG 58.644 55.000 0.00 0.00 0.00 5.12
1789 2942 1.074752 GCTCAGGCAACGAGAGAAAG 58.925 55.000 0.00 0.00 43.54 2.62
1797 2950 2.110967 CAGATGGGCTCAGGCAACG 61.111 63.158 0.00 0.00 46.39 4.10
1825 2978 6.096141 ACGCCAATCAACAATCATTAACCATA 59.904 34.615 0.00 0.00 0.00 2.74
1895 3048 3.189618 TGCATAAGATGGTGCTCTCAG 57.810 47.619 0.00 0.00 41.78 3.35
1896 3049 3.851458 ATGCATAAGATGGTGCTCTCA 57.149 42.857 0.00 0.00 41.78 3.27
1897 3050 5.936372 TGATTATGCATAAGATGGTGCTCTC 59.064 40.000 22.76 12.38 41.78 3.20
1898 3051 5.872963 TGATTATGCATAAGATGGTGCTCT 58.127 37.500 22.76 3.67 41.78 4.09
1899 3052 6.373495 TCATGATTATGCATAAGATGGTGCTC 59.627 38.462 26.18 17.39 41.78 4.26
1900 3053 6.243148 TCATGATTATGCATAAGATGGTGCT 58.757 36.000 26.18 11.24 41.78 4.40
1907 3060 7.881232 TCTCATTGCTCATGATTATGCATAAGA 59.119 33.333 22.76 13.89 41.35 2.10
2015 3168 8.663025 AGCATCGCATCTTAACATTATCTTATG 58.337 33.333 0.00 0.00 0.00 1.90
2016 3169 8.783833 AGCATCGCATCTTAACATTATCTTAT 57.216 30.769 0.00 0.00 0.00 1.73
2017 3170 9.875691 ATAGCATCGCATCTTAACATTATCTTA 57.124 29.630 0.00 0.00 0.00 2.10
2163 3322 8.836413 ACACGTAGTACTTGTTAACAGTACTTA 58.164 33.333 32.24 22.88 44.13 2.24
2164 3323 7.707104 ACACGTAGTACTTGTTAACAGTACTT 58.293 34.615 32.24 22.09 44.13 2.24
2165 3324 7.264373 ACACGTAGTACTTGTTAACAGTACT 57.736 36.000 31.09 31.09 46.89 2.73
2166 3325 8.283291 ACTACACGTAGTACTTGTTAACAGTAC 58.717 37.037 25.17 25.17 43.98 2.73
2182 3344 8.186163 TGATGAACAGGTTAATACTACACGTAG 58.814 37.037 2.63 2.63 39.04 3.51
2183 3345 8.054152 TGATGAACAGGTTAATACTACACGTA 57.946 34.615 0.00 0.00 0.00 3.57
2185 3347 7.491372 ACATGATGAACAGGTTAATACTACACG 59.509 37.037 0.00 0.00 40.75 4.49
2186 3348 8.718102 ACATGATGAACAGGTTAATACTACAC 57.282 34.615 0.00 0.00 40.75 2.90
2191 3353 9.811995 TGTACTACATGATGAACAGGTTAATAC 57.188 33.333 0.00 0.00 40.75 1.89
2212 3374 8.109705 TGTTCAAAGCAACATAATCATGTACT 57.890 30.769 0.00 0.00 44.83 2.73
2213 3375 8.741101 TTGTTCAAAGCAACATAATCATGTAC 57.259 30.769 0.00 0.00 44.83 2.90
2214 3376 9.926158 AATTGTTCAAAGCAACATAATCATGTA 57.074 25.926 0.00 0.00 44.83 2.29
2253 3415 4.241681 GTCAGAGAAGTGTGAATCCTGAC 58.758 47.826 0.00 0.00 41.12 3.51
2310 3473 2.501723 CCATGCCCAGTCTACTGTACTT 59.498 50.000 9.17 0.00 42.27 2.24
2415 3578 6.717997 CCTGTAACCTAAACCCATGTAACTTT 59.282 38.462 0.00 0.00 0.00 2.66
2482 3645 4.701956 ACCCGCAATCATTGAACTAAAG 57.298 40.909 0.00 0.00 0.00 1.85
2607 3774 0.180406 AACAGCTGGAAACACGAGGT 59.820 50.000 19.93 0.00 35.58 3.85
2611 3778 1.569493 CCGAACAGCTGGAAACACG 59.431 57.895 19.93 12.91 35.60 4.49
2667 3842 7.038658 AGCCTTCTGGAACTCATATAAGTATCC 60.039 40.741 2.03 2.03 34.57 2.59
2668 3843 7.816995 CAGCCTTCTGGAACTCATATAAGTATC 59.183 40.741 0.00 0.00 36.68 2.24
2669 3844 7.675062 CAGCCTTCTGGAACTCATATAAGTAT 58.325 38.462 0.00 0.00 36.68 2.12
2675 3850 2.158696 GGCAGCCTTCTGGAACTCATAT 60.159 50.000 3.29 0.00 40.65 1.78
2691 3866 0.097674 CATAACAGAAGCACGGCAGC 59.902 55.000 0.00 0.00 0.00 5.25
2696 3871 2.973224 GCAAACACATAACAGAAGCACG 59.027 45.455 0.00 0.00 0.00 5.34
2697 3872 4.228912 AGCAAACACATAACAGAAGCAC 57.771 40.909 0.00 0.00 0.00 4.40
2699 3874 3.426525 GCAAGCAAACACATAACAGAAGC 59.573 43.478 0.00 0.00 0.00 3.86
2854 4029 2.256461 CGTTTCCAGCTTGCTGCC 59.744 61.111 16.37 3.99 44.23 4.85
2918 4101 6.432472 AGAGCTTCTACCCATCAAAAGAAAAG 59.568 38.462 0.00 0.00 0.00 2.27
2929 4112 1.912043 AGTGCAAGAGCTTCTACCCAT 59.088 47.619 0.00 0.00 42.74 4.00
2930 4113 1.352083 AGTGCAAGAGCTTCTACCCA 58.648 50.000 0.00 0.00 42.74 4.51
2944 4127 0.106469 TGGCCCAGTAACAAAGTGCA 60.106 50.000 0.00 0.00 0.00 4.57
2959 4142 6.072008 AGGCATAAAAACAATTTCAAATGGCC 60.072 34.615 0.00 0.00 38.26 5.36
3073 4310 3.428862 GCCAATGATTACCCGAAACTTGG 60.429 47.826 0.00 0.00 35.97 3.61
3077 4314 3.013921 TCTGCCAATGATTACCCGAAAC 58.986 45.455 0.00 0.00 0.00 2.78
3090 4327 9.035890 TGTACTATATAGCTAACATCTGCCAAT 57.964 33.333 9.78 0.00 0.00 3.16
3152 4399 8.183104 ACCATGATTGAAGATAAGTAGATCGA 57.817 34.615 0.00 0.00 0.00 3.59
3208 4455 2.936498 GTGGTCTACGGATTTGGATGTG 59.064 50.000 0.00 0.00 0.00 3.21
3234 4481 3.176708 GCTTAAATGCTCGTAGTCGTCA 58.823 45.455 0.00 0.00 38.33 4.35
3251 4498 3.700961 GCGCCTTCGATTCGCTTA 58.299 55.556 15.89 0.00 44.79 3.09
3269 4516 1.265095 CTGTTGTTGTTCTGATGCGCT 59.735 47.619 9.73 0.00 0.00 5.92
3270 4517 1.678360 CTGTTGTTGTTCTGATGCGC 58.322 50.000 0.00 0.00 0.00 6.09
3271 4518 1.664016 GGCTGTTGTTGTTCTGATGCG 60.664 52.381 0.00 0.00 0.00 4.73
3272 4519 1.664016 CGGCTGTTGTTGTTCTGATGC 60.664 52.381 0.00 0.00 0.00 3.91
3273 4520 1.603802 ACGGCTGTTGTTGTTCTGATG 59.396 47.619 0.00 0.00 0.00 3.07
3274 4521 1.873591 GACGGCTGTTGTTGTTCTGAT 59.126 47.619 0.00 0.00 0.00 2.90
3275 4522 1.295792 GACGGCTGTTGTTGTTCTGA 58.704 50.000 0.00 0.00 0.00 3.27
3276 4523 1.013596 TGACGGCTGTTGTTGTTCTG 58.986 50.000 0.00 0.00 0.00 3.02
3277 4524 1.745232 TTGACGGCTGTTGTTGTTCT 58.255 45.000 0.00 0.00 0.00 3.01
3278 4525 2.774439 ATTGACGGCTGTTGTTGTTC 57.226 45.000 0.00 0.00 0.00 3.18
3279 4526 4.336993 TCTTTATTGACGGCTGTTGTTGTT 59.663 37.500 0.00 0.00 0.00 2.83
3280 4527 3.880490 TCTTTATTGACGGCTGTTGTTGT 59.120 39.130 0.00 0.00 0.00 3.32
3281 4528 4.024048 ACTCTTTATTGACGGCTGTTGTTG 60.024 41.667 0.00 0.00 0.00 3.33
3282 4529 4.134563 ACTCTTTATTGACGGCTGTTGTT 58.865 39.130 0.00 0.00 0.00 2.83
3283 4530 3.740115 ACTCTTTATTGACGGCTGTTGT 58.260 40.909 0.00 0.00 0.00 3.32
3284 4531 4.201724 GCTACTCTTTATTGACGGCTGTTG 60.202 45.833 0.00 0.00 0.00 3.33
3285 4532 3.933332 GCTACTCTTTATTGACGGCTGTT 59.067 43.478 0.00 0.00 0.00 3.16
3286 4533 3.056107 TGCTACTCTTTATTGACGGCTGT 60.056 43.478 0.00 0.00 0.00 4.40
3287 4534 3.521560 TGCTACTCTTTATTGACGGCTG 58.478 45.455 0.00 0.00 0.00 4.85
3288 4535 3.887621 TGCTACTCTTTATTGACGGCT 57.112 42.857 0.00 0.00 0.00 5.52
3289 4536 5.529791 TCTATGCTACTCTTTATTGACGGC 58.470 41.667 0.00 0.00 0.00 5.68
3290 4537 7.867909 TCAATCTATGCTACTCTTTATTGACGG 59.132 37.037 0.00 0.00 29.67 4.79
3291 4538 8.803201 TCAATCTATGCTACTCTTTATTGACG 57.197 34.615 0.00 0.00 29.67 4.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.