AutoCloner

Multiple sequence alignment - TraesCS4A01G110700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS4A01G110700	chr4A	100.000	3233	0	0	1	3233	135352644	135355876	0.000000e+00	5971
1	TraesCS4A01G110700	chr4D	92.973	1978	75	24	931	2889	337261828	337259896	0.000000e+00	2824
2	TraesCS4A01G110700	chr4D	92.661	109	5	3	2288	2396	480824293	480824188	1.550000e-33	154
3	TraesCS4A01G110700	chr4B	90.077	1814	98	35	1323	3088	416441539	416439760	0.000000e+00	2278
4	TraesCS4A01G110700	chr4B	90.909	275	18	6	931	1200	416441930	416441658	2.370000e-96	363
5	TraesCS4A01G110700	chr4B	95.690	116	4	1	3118	3233	416439759	416439645	5.510000e-43	185
6	TraesCS4A01G110700	chr4B	94.898	98	4	1	2289	2386	608669008	608668912	5.590000e-33	152
7	TraesCS4A01G110700	chr4B	91.346	104	9	0	1193	1296	416441638	416441535	3.360000e-30	143
8	TraesCS4A01G110700	chr5A	98.704	926	12	0	1	926	618276416	618275491	0.000000e+00	1644
9	TraesCS4A01G110700	chr3B	98.495	930	14	0	1	930	452748740	452747811	0.000000e+00	1640
10	TraesCS4A01G110700	chr6A	98.156	922	17	0	1	922	101910069	101910990	0.000000e+00	1609
11	TraesCS4A01G110700	chr6A	93.269	104	4	3	2285	2388	99206763	99206863	2.010000e-32	150
12	TraesCS4A01G110700	chr7B	98.154	921	16	1	1	921	718887949	718888868	0.000000e+00	1605
13	TraesCS4A01G110700	chr7B	97.935	920	19	0	1	920	750073105	750072186	0.000000e+00	1594
14	TraesCS4A01G110700	chr2B	97.852	931	17	3	1	931	531102407	531101480	0.000000e+00	1605
15	TraesCS4A01G110700	chr2B	96.992	931	25	3	1	931	520683807	520682880	0.000000e+00	1561
16	TraesCS4A01G110700	chr7A	98.046	921	18	0	1	921	37855308	37854388	0.000000e+00	1602
17	TraesCS4A01G110700	chr7A	91.935	124	8	2	968	1090	20999882	21000004	4.290000e-39	172
18	TraesCS4A01G110700	chr1B	98.046	921	17	1	1	921	648665932	648665013	0.000000e+00	1600
19	TraesCS4A01G110700	chr6D	94.231	104	2	4	2290	2393	82588540	82588639	4.320000e-34	156
20	TraesCS4A01G110700	chr6D	94.231	104	2	4	2290	2393	82589113	82589212	4.320000e-34	156
21	TraesCS4A01G110700	chr5D	94.898	98	5	0	2290	2387	302378386	302378483	1.550000e-33	154
22	TraesCS4A01G110700	chr3A	91.743	109	5	2	2286	2394	46602854	46602958	7.230000e-32	148

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS4A01G110700	chr4A	135352644	135355876	3232	False	5971.00	5971	100.0000	1	3233	1	chr4A.!!$F1	3232
1	TraesCS4A01G110700	chr4D	337259896	337261828	1932	True	2824.00	2824	92.9730	931	2889	1	chr4D.!!$R1	1958
2	TraesCS4A01G110700	chr4B	416439645	416441930	2285	True	742.25	2278	92.0055	931	3233	4	chr4B.!!$R2	2302
3	TraesCS4A01G110700	chr5A	618275491	618276416	925	True	1644.00	1644	98.7040	1	926	1	chr5A.!!$R1	925
4	TraesCS4A01G110700	chr3B	452747811	452748740	929	True	1640.00	1640	98.4950	1	930	1	chr3B.!!$R1	929
5	TraesCS4A01G110700	chr6A	101910069	101910990	921	False	1609.00	1609	98.1560	1	922	1	chr6A.!!$F2	921
6	TraesCS4A01G110700	chr7B	718887949	718888868	919	False	1605.00	1605	98.1540	1	921	1	chr7B.!!$F1	920
7	TraesCS4A01G110700	chr7B	750072186	750073105	919	True	1594.00	1594	97.9350	1	920	1	chr7B.!!$R1	919
8	TraesCS4A01G110700	chr2B	531101480	531102407	927	True	1605.00	1605	97.8520	1	931	1	chr2B.!!$R2	930
9	TraesCS4A01G110700	chr2B	520682880	520683807	927	True	1561.00	1561	96.9920	1	931	1	chr2B.!!$R1	930
10	TraesCS4A01G110700	chr7A	37854388	37855308	920	True	1602.00	1602	98.0460	1	921	1	chr7A.!!$R1	920
11	TraesCS4A01G110700	chr1B	648665013	648665932	919	True	1600.00	1600	98.0460	1	921	1	chr1B.!!$R1	920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
872	874	1.074244	CCGGTTTTAGACTTTGGGGGA	59.926	52.381	0.0	0.0	0.0	4.81	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2739	2836	0.032267	GTCCTCCTTAATCTCCGCGG	59.968	60.0	22.12	22.12	0.0	6.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	2.455557	CCAATAGGTGTTGCATTCCCA	58.544	47.619	0.00	0.00	0.00	4.37
643	645	2.902423	AAGGTTGGGCGTGCTTGACA	62.902	55.000	0.00	0.00	0.00	3.58
830	832	3.010138	AGGGAGAATTGATCCGGTTTTGA	59.990	43.478	0.00	0.00	37.75	2.69
872	874	1.074244	CCGGTTTTAGACTTTGGGGGA	59.926	52.381	0.00	0.00	0.00	4.81
923	925	5.114780	GGGGAAAACGATACTTTCCTCTAC	58.885	45.833	12.70	0.00	46.10	2.59
964	966	2.675075	CCAACAAATCGGCCCGGT	60.675	61.111	1.90	0.00	0.00	5.28
976	978	2.113139	CCCGGTCCAACAAGCTGT	59.887	61.111	0.00	0.00	0.00	4.40
1037	1045	7.071698	TCACAAATTCTATCTCTTCTGGCCTAT	59.928	37.037	3.32	0.00	0.00	2.57
1061	1069	2.981560	AAAATGCAGTGGCCGAGCG	61.982	57.895	0.00	0.00	40.13	5.03
1133	1141	1.884067	GCCACTGCCAAAGTAAGCTCT	60.884	52.381	0.00	0.00	36.83	4.09
1315	1364	5.764686	TGAATGCTAACGCTATCATCCAATT	59.235	36.000	0.00	0.00	36.97	2.32
1325	1374	5.163784	CGCTATCATCCAATTTAGGCATGAG	60.164	44.000	0.00	0.00	0.00	2.90
1366	1416	6.458232	CAGCTAGTTGTTGGACTATCTAGT	57.542	41.667	0.00	0.00	39.71	2.57
1367	1417	6.868622	CAGCTAGTTGTTGGACTATCTAGTT	58.131	40.000	0.00	0.00	36.50	2.24
1368	1418	7.997482	CAGCTAGTTGTTGGACTATCTAGTTA	58.003	38.462	0.00	0.00	36.50	2.24
1369	1419	8.634444	CAGCTAGTTGTTGGACTATCTAGTTAT	58.366	37.037	0.00	0.00	36.50	1.89
1370	1420	8.852135	AGCTAGTTGTTGGACTATCTAGTTATC	58.148	37.037	0.00	0.00	36.50	1.75
1371	1421	8.852135	GCTAGTTGTTGGACTATCTAGTTATCT	58.148	37.037	0.00	0.00	36.50	1.98
1453	1503	1.351707	CGCAACCGGATGTGTATGC	59.648	57.895	16.49	9.47	0.00	3.14
1642	1692	1.374947	CGGAGGCACAGGAGGAAAA	59.625	57.895	0.00	0.00	0.00	2.29
1782	1832	3.296709	CTGGGCAAGTACGCGGAGT	62.297	63.158	12.47	0.00	0.00	3.85
1827	1877	2.266627	AAGAAGGGCTCGTCGTCGT	61.267	57.895	1.33	0.00	38.33	4.34
1828	1878	2.197643	AAGAAGGGCTCGTCGTCGTC	62.198	60.000	1.33	0.00	38.33	4.20
1829	1879	3.996744	GAAGGGCTCGTCGTCGTCG	62.997	68.421	5.50	5.50	38.33	5.12
2033	2083	2.504026	GACGTGCTCATCGTCGCA	60.504	61.111	0.00	0.00	45.64	5.10
2159	2227	7.345192	GTTCTGTAACAATAATGCCGTCTATG	58.655	38.462	0.00	0.00	35.56	2.23
2163	2231	7.446769	TGTAACAATAATGCCGTCTATGGTAT	58.553	34.615	0.00	0.00	35.68	2.73
2164	2232	6.801539	AACAATAATGCCGTCTATGGTATG	57.198	37.500	0.00	0.00	34.29	2.39
2193	2261	2.297033	GGCAGATTTTGAGCACAGGAAA	59.703	45.455	0.00	0.00	0.00	3.13
2194	2262	3.243839	GGCAGATTTTGAGCACAGGAAAA	60.244	43.478	0.00	0.00	0.00	2.29
2219	2288	6.542574	ACACCGTGATTGTACGAATTAAAA	57.457	33.333	5.28	0.00	46.46	1.52
2280	2353	5.517904	AGTGTTAAGTAACTCGTCTGTGTC	58.482	41.667	3.07	0.00	37.12	3.67
2375	2448	1.025113	CCAGCAGCCACATCTCACTG	61.025	60.000	0.00	0.00	0.00	3.66
2382	2462	3.067180	CAGCCACATCTCACTGTTTTTGT	59.933	43.478	0.00	0.00	0.00	2.83
2390	2470	9.520204	CACATCTCACTGTTTTTGTTTTTCTAT	57.480	29.630	0.00	0.00	0.00	1.98
2626	2719	2.278857	CGCTCCATCGACTTCCGG	60.279	66.667	0.00	0.00	39.14	5.14
2627	2720	2.771639	CGCTCCATCGACTTCCGGA	61.772	63.158	0.00	0.00	39.14	5.14
2644	2737	1.635817	GGAGCAGCCCCAGGTGATTA	61.636	60.000	0.00	0.00	40.90	1.75
2648	2741	1.410083	GCAGCCCCAGGTGATTATTGA	60.410	52.381	0.00	0.00	44.53	2.57
2651	2744	1.215423	GCCCCAGGTGATTATTGACCT	59.785	52.381	0.00	0.00	43.79	3.85
2652	2745	2.441750	GCCCCAGGTGATTATTGACCTA	59.558	50.000	0.00	0.00	40.85	3.08
2688	2781	3.164977	TCGAACCAGTGCCACCCA	61.165	61.111	0.00	0.00	0.00	4.51
2761	2858	1.033574	CGGAGATTAAGGAGGACGCT	58.966	55.000	0.00	0.00	0.00	5.07
2764	2861	2.032620	GAGATTAAGGAGGACGCTGGA	58.967	52.381	0.00	0.00	0.00	3.86
2786	2883	0.036732	GCAGGTGGTGGTGATTCTCA	59.963	55.000	0.00	0.00	0.00	3.27
2794	2891	0.982852	TGGTGATTCTCATCGGCCCT	60.983	55.000	0.00	0.00	27.66	5.19
2911	3008	1.846541	GCTCCATTCTCTCTACGTGC	58.153	55.000	0.00	0.00	0.00	5.34
2921	3018	4.424626	TCTCTCTACGTGCTAATTTGCTG	58.575	43.478	12.99	8.03	0.00	4.41
2922	3019	4.082190	TCTCTCTACGTGCTAATTTGCTGT	60.082	41.667	12.99	12.87	0.00	4.40
2925	3022	1.238439	ACGTGCTAATTTGCTGTGCT	58.762	45.000	12.99	0.00	0.00	4.40
2926	3023	1.069022	ACGTGCTAATTTGCTGTGCTG	60.069	47.619	12.99	0.12	0.00	4.41
2927	3024	1.343506	GTGCTAATTTGCTGTGCTGC	58.656	50.000	12.99	0.00	0.00	5.25
2947	3046	0.960364	TGCCATTGCTTTCCGTCTCC	60.960	55.000	0.00	0.00	38.71	3.71
2949	3048	1.425428	CATTGCTTTCCGTCTCCGC	59.575	57.895	0.00	0.00	0.00	5.54
2950	3049	1.745489	ATTGCTTTCCGTCTCCGCC	60.745	57.895	0.00	0.00	0.00	6.13
2951	3050	3.894547	TTGCTTTCCGTCTCCGCCC	62.895	63.158	0.00	0.00	0.00	6.13
2967	3066	1.328680	CGCCCTGAATTTGATGTCTCG	59.671	52.381	0.00	0.00	0.00	4.04
2985	3084	4.324936	GTCTCGAGACAAGCATTCTGTAAC	59.675	45.833	34.97	7.30	44.18	2.50
3009	3108	1.602311	AATGCGGGCTCATCTGATTC	58.398	50.000	0.00	0.00	0.00	2.52
3016	3115	2.485479	GGGCTCATCTGATTCGGCTTTA	60.485	50.000	8.67	0.00	0.00	1.85
3020	3119	5.393027	GGCTCATCTGATTCGGCTTTAAAAA	60.393	40.000	0.00	0.00	0.00	1.94
3024	3123	5.643379	TCTGATTCGGCTTTAAAAATGCT	57.357	34.783	0.00	0.00	0.00	3.79
3034	3133	9.862371	TCGGCTTTAAAAATGCTTATATTTTGA	57.138	25.926	0.00	0.00	39.48	2.69
3059	3158	9.507280	GAATAATTTGTTACTGGATCACATGTG	57.493	33.333	20.18	20.18	0.00	3.21
3088	3187	6.859112	ACTGTAGTTTCAGTCTCATGGTAT	57.141	37.500	0.00	0.00	44.07	2.73
3089	3188	7.246171	ACTGTAGTTTCAGTCTCATGGTATT	57.754	36.000	0.00	0.00	44.07	1.89
3090	3189	8.362464	ACTGTAGTTTCAGTCTCATGGTATTA	57.638	34.615	0.00	0.00	44.07	0.98
3091	3190	8.812972	ACTGTAGTTTCAGTCTCATGGTATTAA	58.187	33.333	0.00	0.00	44.07	1.40
3092	3191	9.823647	CTGTAGTTTCAGTCTCATGGTATTAAT	57.176	33.333	0.00	0.00	0.00	1.40
3109	3208	9.810545	TGGTATTAATAATTTTACTTGCCTTGC	57.189	29.630	0.00	0.00	0.00	4.01
3110	3209	9.810545	GGTATTAATAATTTTACTTGCCTTGCA	57.189	29.630	0.00	0.00	36.47	4.08
3129	3228	2.525055	CAAAAATGGCACCGGATAACG	58.475	47.619	9.46	0.00	43.80	3.18
3165	3264	7.461182	AAACACCGAAATCTTATTCCATGAA	57.539	32.000	0.00	0.00	0.00	2.57
3182	3281	4.036734	CCATGAATAAGTTGGGGTGATTCG	59.963	45.833	0.00	0.00	30.65	3.34
3229	3328	7.625395	GCTTGAATGTTAATAACCATGTCGTCA	60.625	37.037	0.18	0.00	0.00	4.35

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
25	26	6.479006	TGATGATTCAAGTGTGGAGAAGATT	58.521	36.000	0.00	0.00	0.00	2.40
54	55	3.706086	ACTGAGTGAGGGTTTGCAATTTT	59.294	39.130	0.00	0.00	0.00	1.82
648	650	4.641645	CAACCTCCCTGTGCCGCA	62.642	66.667	0.00	0.00	0.00	5.69
808	810	3.010138	TCAAAACCGGATCAATTCTCCCT	59.990	43.478	9.46	0.00	0.00	4.20
830	832	4.385754	GGATCAATCAGCCCCTAAACTCTT	60.386	45.833	0.00	0.00	0.00	2.85
872	874	4.220693	TCATGTCTGATGGACCGATTTT	57.779	40.909	0.00	0.00	43.89	1.82
891	893	2.961531	TCGTTTTCCCCCTCAAATCA	57.038	45.000	0.00	0.00	0.00	2.57
964	966	2.936919	ACATCAGACAGCTTGTTGGA	57.063	45.000	0.00	0.00	0.00	3.53
976	978	1.476891	GGGACGACTGCTTACATCAGA	59.523	52.381	0.00	0.00	35.61	3.27
1061	1069	2.016096	GCAGCCATCTTCTTCTCACCC	61.016	57.143	0.00	0.00	0.00	4.61
1133	1141	1.081174	AGAAGATGAAGAGGGGTGGGA	59.919	52.381	0.00	0.00	0.00	4.37
1227	1276	5.561993	GTGCACTAAACTCGTTACAACAAA	58.438	37.500	10.32	0.00	0.00	2.83
1315	1364	6.711277	ACTTGTCAAGATAACTCATGCCTAA	58.289	36.000	19.53	0.00	0.00	2.69
1325	1374	4.327680	AGCTGGGAACTTGTCAAGATAAC	58.672	43.478	19.53	7.25	0.00	1.89
1367	1417	9.844790	CAACAAATTTTGCTGTGATTCTAGATA	57.155	29.630	9.04	0.00	0.00	1.98
1368	1418	7.816031	CCAACAAATTTTGCTGTGATTCTAGAT	59.184	33.333	9.04	0.00	0.00	1.98
1369	1419	7.147312	CCAACAAATTTTGCTGTGATTCTAGA	58.853	34.615	9.04	0.00	0.00	2.43
1370	1420	6.128742	GCCAACAAATTTTGCTGTGATTCTAG	60.129	38.462	9.04	0.00	0.00	2.43
1371	1421	5.695816	GCCAACAAATTTTGCTGTGATTCTA	59.304	36.000	9.04	0.00	0.00	2.10
1372	1422	4.512571	GCCAACAAATTTTGCTGTGATTCT	59.487	37.500	9.04	0.00	0.00	2.40
1373	1423	4.608890	CGCCAACAAATTTTGCTGTGATTC	60.609	41.667	9.04	0.00	0.00	2.52
1387	1437	6.090628	GCAAATTATCTCATTTCGCCAACAAA	59.909	34.615	0.00	0.00	0.00	2.83
1453	1503	1.209019	AGATGCCTCCTAGCTGTTGTG	59.791	52.381	0.00	0.00	0.00	3.33
1636	1686	1.098050	GCTGATGGTCGCATTTTCCT	58.902	50.000	0.00	0.00	0.00	3.36
1637	1687	0.248215	CGCTGATGGTCGCATTTTCC	60.248	55.000	0.00	0.00	0.00	3.13
1638	1688	3.224955	CGCTGATGGTCGCATTTTC	57.775	52.632	0.00	0.00	0.00	2.29
1827	1877	3.744719	CTCCGGCTTGGACGACGA	61.745	66.667	0.00	0.00	43.74	4.20
1828	1878	3.569049	AACTCCGGCTTGGACGACG	62.569	63.158	0.00	0.00	43.74	5.12
1829	1879	1.737008	GAACTCCGGCTTGGACGAC	60.737	63.158	0.00	0.00	43.74	4.34
1889	1939	4.715523	TTCCGCCCGCCCTTCTTG	62.716	66.667	0.00	0.00	0.00	3.02
2159	2227	5.766670	TCAAAATCTGCCTCATCATCATACC	59.233	40.000	0.00	0.00	0.00	2.73
2163	2231	3.630769	GCTCAAAATCTGCCTCATCATCA	59.369	43.478	0.00	0.00	0.00	3.07
2164	2232	3.630769	TGCTCAAAATCTGCCTCATCATC	59.369	43.478	0.00	0.00	0.00	2.92
2193	2261	7.830940	TTAATTCGTACAATCACGGTGTATT	57.169	32.000	8.17	4.27	42.19	1.89
2194	2262	7.830940	TTTAATTCGTACAATCACGGTGTAT	57.169	32.000	8.17	0.00	42.19	2.29
2253	2323	6.527023	CACAGACGAGTTACTTAACACTATGG	59.473	42.308	2.10	0.00	38.62	2.74
2271	2344	2.032894	GGTGTTCAACATGACACAGACG	60.033	50.000	15.04	0.00	33.31	4.18
2280	2353	2.101249	AGCCACTTTGGTGTTCAACATG	59.899	45.455	0.00	0.00	40.46	3.21
2570	2663	2.247437	GGGATCCATTCGCGCAGAC	61.247	63.158	15.23	0.00	0.00	3.51
2626	2719	0.475906	ATAATCACCTGGGGCTGCTC	59.524	55.000	0.00	0.00	0.00	4.26
2627	2720	0.929244	AATAATCACCTGGGGCTGCT	59.071	50.000	0.00	0.00	0.00	4.24
2644	2737	6.924060	CGATTAGACGAGGAAAATAGGTCAAT	59.076	38.462	0.00	0.00	35.09	2.57
2648	2741	4.648307	ACCGATTAGACGAGGAAAATAGGT	59.352	41.667	0.00	0.00	33.96	3.08
2651	2744	4.576053	TCGACCGATTAGACGAGGAAAATA	59.424	41.667	0.00	0.00	35.09	1.40
2652	2745	3.379372	TCGACCGATTAGACGAGGAAAAT	59.621	43.478	0.00	0.00	35.09	1.82
2688	2781	2.220479	GCTAGGGTTTTAGCGTCGAT	57.780	50.000	0.00	0.00	36.97	3.59
2739	2836	0.032267	GTCCTCCTTAATCTCCGCGG	59.968	60.000	22.12	22.12	0.00	6.46
2746	2843	2.981859	TTCCAGCGTCCTCCTTAATC	57.018	50.000	0.00	0.00	0.00	1.75
2748	2845	1.338769	GCTTTCCAGCGTCCTCCTTAA	60.339	52.381	0.00	0.00	35.91	1.85
2749	2846	0.249398	GCTTTCCAGCGTCCTCCTTA	59.751	55.000	0.00	0.00	35.91	2.69
2751	2848	2.665603	GCTTTCCAGCGTCCTCCT	59.334	61.111	0.00	0.00	35.91	3.69
2761	2858	1.152777	CACCACCACCTGCTTTCCA	60.153	57.895	0.00	0.00	0.00	3.53
2764	2861	1.145738	AGAATCACCACCACCTGCTTT	59.854	47.619	0.00	0.00	0.00	3.51
2911	3008	1.625616	GCAGCAGCACAGCAAATTAG	58.374	50.000	0.00	0.00	41.58	1.73
2921	3018	1.005394	AAAGCAATGGCAGCAGCAC	60.005	52.632	2.65	0.00	44.61	4.40
2922	3019	1.290955	GAAAGCAATGGCAGCAGCA	59.709	52.632	2.65	0.00	44.61	4.41
2925	3022	1.865788	GACGGAAAGCAATGGCAGCA	61.866	55.000	0.00	0.00	44.61	4.41
2926	3023	1.153958	GACGGAAAGCAATGGCAGC	60.154	57.895	0.00	0.00	44.61	5.25
2927	3024	0.449388	GAGACGGAAAGCAATGGCAG	59.551	55.000	0.00	0.00	44.61	4.85
2947	3046	1.328680	CGAGACATCAAATTCAGGGCG	59.671	52.381	0.00	0.00	0.00	6.13
2949	3048	3.868077	GTCTCGAGACATCAAATTCAGGG	59.132	47.826	34.97	0.00	44.18	4.45
2967	3066	2.094417	GGCGTTACAGAATGCTTGTCTC	59.906	50.000	2.21	0.00	45.41	3.36
3034	3133	9.023962	ACACATGTGATCCAGTAACAAATTATT	57.976	29.630	31.94	0.00	0.00	1.40
3104	3203	0.950071	CCGGTGCCATTTTTGCAAGG	60.950	55.000	0.00	0.00	41.06	3.61
3105	3204	0.033228	TCCGGTGCCATTTTTGCAAG	59.967	50.000	0.00	0.00	41.06	4.01
3106	3205	0.683973	ATCCGGTGCCATTTTTGCAA	59.316	45.000	0.00	0.00	41.06	4.08
3107	3206	1.550327	TATCCGGTGCCATTTTTGCA	58.450	45.000	0.00	0.00	36.12	4.08
3108	3207	2.267426	GTTATCCGGTGCCATTTTTGC	58.733	47.619	0.00	0.00	0.00	3.68
3109	3208	2.094957	ACGTTATCCGGTGCCATTTTTG	60.095	45.455	0.00	0.00	42.24	2.44
3110	3209	2.162809	GACGTTATCCGGTGCCATTTTT	59.837	45.455	0.00	0.00	42.24	1.94
3111	3210	1.741145	GACGTTATCCGGTGCCATTTT	59.259	47.619	0.00	0.00	42.24	1.82
3112	3211	1.065709	AGACGTTATCCGGTGCCATTT	60.066	47.619	0.00	0.00	42.24	2.32
3113	3212	0.539986	AGACGTTATCCGGTGCCATT	59.460	50.000	0.00	0.00	42.24	3.16
3114	3213	0.104304	GAGACGTTATCCGGTGCCAT	59.896	55.000	0.00	0.00	42.24	4.40
3115	3214	1.252215	TGAGACGTTATCCGGTGCCA	61.252	55.000	0.00	0.00	42.24	4.92
3116	3215	0.108520	TTGAGACGTTATCCGGTGCC	60.109	55.000	0.00	0.00	42.24	5.01
3129	3228	7.415229	AGATTTCGGTGTTTTAACTTTGAGAC	58.585	34.615	0.00	0.00	0.00	3.36
3165	3264	1.409661	GCCCGAATCACCCCAACTTAT	60.410	52.381	0.00	0.00	0.00	1.73
3175	3274	0.527565	AATTGCACTGCCCGAATCAC	59.472	50.000	0.00	0.00	0.00	3.06
3182	3281	3.066380	CCAAGTAAAAATTGCACTGCCC	58.934	45.455	0.00	0.00	0.00	5.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.