Multiple sequence alignment - TraesCS4A01G109800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G109800 chr4A 100.000 2192 0 0 1 2192 133451938 133449747 0.000000e+00 4048.0
1 TraesCS4A01G109800 chr4D 84.129 775 75 21 1451 2183 338835182 338835950 0.000000e+00 706.0
2 TraesCS4A01G109800 chr4B 82.670 779 80 28 1446 2180 417768499 417769266 6.600000e-180 640.0
3 TraesCS4A01G109800 chr5D 86.535 505 40 15 766 1243 503254248 503253745 4.140000e-147 531.0
4 TraesCS4A01G109800 chr5D 91.000 200 14 3 565 761 240133214 240133016 1.290000e-67 267.0
5 TraesCS4A01G109800 chr5D 89.950 199 17 3 565 761 449153643 449153840 1.000000e-63 254.0
6 TraesCS4A01G109800 chr2D 86.417 508 41 14 763 1243 591996175 591996681 4.140000e-147 531.0
7 TraesCS4A01G109800 chr5A 86.301 511 40 17 760 1243 482022546 482023053 1.490000e-146 529.0
8 TraesCS4A01G109800 chr3D 86.653 502 38 15 770 1243 158938447 158937947 1.490000e-146 529.0
9 TraesCS4A01G109800 chr3D 86.427 501 40 15 770 1243 589249674 589249175 6.930000e-145 523.0
10 TraesCS4A01G109800 chr3D 90.955 199 15 3 565 761 21899599 21899402 4.640000e-67 265.0
11 TraesCS4A01G109800 chr1D 86.627 501 37 16 770 1243 200552372 200551875 5.360000e-146 527.0
12 TraesCS4A01G109800 chr1D 91.457 199 14 3 565 761 483920897 483921094 9.970000e-69 270.0
13 TraesCS4A01G109800 chr1D 90.909 198 16 2 565 761 254491723 254491527 4.640000e-67 265.0
14 TraesCS4A01G109800 chr3B 86.310 504 43 15 763 1243 702968256 702968756 1.930000e-145 525.0
15 TraesCS4A01G109800 chrUn 87.366 467 36 13 797 1243 418305180 418304717 4.170000e-142 514.0
16 TraesCS4A01G109800 chrUn 88.915 424 31 9 835 1243 371791801 371791379 1.940000e-140 508.0
17 TraesCS4A01G109800 chrUn 91.000 200 14 3 565 761 412877344 412877146 1.290000e-67 267.0
18 TraesCS4A01G109800 chrUn 90.955 199 15 3 565 761 317471125 317471322 4.640000e-67 265.0
19 TraesCS4A01G109800 chrUn 91.534 189 14 2 574 761 444994283 444994096 2.160000e-65 259.0
20 TraesCS4A01G109800 chr6D 91.457 199 14 3 565 761 431404968 431404771 9.970000e-69 270.0
21 TraesCS4A01G109800 chr6D 95.833 48 1 1 1378 1424 14086446 14086399 2.330000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G109800 chr4A 133449747 133451938 2191 True 4048 4048 100.000 1 2192 1 chr4A.!!$R1 2191
1 TraesCS4A01G109800 chr4D 338835182 338835950 768 False 706 706 84.129 1451 2183 1 chr4D.!!$F1 732
2 TraesCS4A01G109800 chr4B 417768499 417769266 767 False 640 640 82.670 1446 2180 1 chr4B.!!$F1 734
3 TraesCS4A01G109800 chr5D 503253745 503254248 503 True 531 531 86.535 766 1243 1 chr5D.!!$R2 477
4 TraesCS4A01G109800 chr2D 591996175 591996681 506 False 531 531 86.417 763 1243 1 chr2D.!!$F1 480
5 TraesCS4A01G109800 chr5A 482022546 482023053 507 False 529 529 86.301 760 1243 1 chr5A.!!$F1 483
6 TraesCS4A01G109800 chr3D 158937947 158938447 500 True 529 529 86.653 770 1243 1 chr3D.!!$R2 473
7 TraesCS4A01G109800 chr3B 702968256 702968756 500 False 525 525 86.310 763 1243 1 chr3B.!!$F1 480

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
153 154 0.103937 TCGTGTCTCATGTGCACACA 59.896 50.0 24.37 12.64 46.44 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1378 1406 0.105504 AGGCTGGTTTTGGGAAGCTT 60.106 50.0 0.0 0.0 35.93 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.573337 ACTAGCTTCATTTCAGATTTGCC 57.427 39.130 0.00 0.00 0.00 4.52
24 25 5.012239 ACTAGCTTCATTTCAGATTTGCCA 58.988 37.500 0.00 0.00 0.00 4.92
25 26 4.877378 AGCTTCATTTCAGATTTGCCAA 57.123 36.364 0.00 0.00 0.00 4.52
26 27 5.217978 AGCTTCATTTCAGATTTGCCAAA 57.782 34.783 0.00 0.00 0.00 3.28
27 28 4.992951 AGCTTCATTTCAGATTTGCCAAAC 59.007 37.500 0.00 0.00 0.00 2.93
28 29 4.992951 GCTTCATTTCAGATTTGCCAAACT 59.007 37.500 0.00 0.00 0.00 2.66
29 30 6.015180 AGCTTCATTTCAGATTTGCCAAACTA 60.015 34.615 0.00 0.00 0.00 2.24
30 31 6.646240 GCTTCATTTCAGATTTGCCAAACTAA 59.354 34.615 0.00 0.00 0.00 2.24
31 32 7.171337 GCTTCATTTCAGATTTGCCAAACTAAA 59.829 33.333 0.00 0.00 0.00 1.85
32 33 9.211485 CTTCATTTCAGATTTGCCAAACTAAAT 57.789 29.630 0.00 0.00 0.00 1.40
34 35 9.638239 TCATTTCAGATTTGCCAAACTAAATAC 57.362 29.630 0.00 0.00 0.00 1.89
35 36 9.421806 CATTTCAGATTTGCCAAACTAAATACA 57.578 29.630 0.00 0.00 0.00 2.29
37 38 9.638239 TTTCAGATTTGCCAAACTAAATACATC 57.362 29.630 0.00 0.00 0.00 3.06
38 39 7.471721 TCAGATTTGCCAAACTAAATACATCG 58.528 34.615 0.00 0.00 0.00 3.84
39 40 7.335673 TCAGATTTGCCAAACTAAATACATCGA 59.664 33.333 0.00 0.00 0.00 3.59
40 41 7.967854 CAGATTTGCCAAACTAAATACATCGAA 59.032 33.333 0.00 0.00 0.00 3.71
41 42 8.519526 AGATTTGCCAAACTAAATACATCGAAA 58.480 29.630 0.00 0.00 0.00 3.46
42 43 9.134734 GATTTGCCAAACTAAATACATCGAAAA 57.865 29.630 0.00 0.00 0.00 2.29
43 44 7.861176 TTGCCAAACTAAATACATCGAAAAC 57.139 32.000 0.00 0.00 0.00 2.43
44 45 7.209471 TGCCAAACTAAATACATCGAAAACT 57.791 32.000 0.00 0.00 0.00 2.66
45 46 7.302524 TGCCAAACTAAATACATCGAAAACTC 58.697 34.615 0.00 0.00 0.00 3.01
46 47 6.464834 GCCAAACTAAATACATCGAAAACTCG 59.535 38.462 0.00 0.00 0.00 4.18
47 48 7.515643 CCAAACTAAATACATCGAAAACTCGT 58.484 34.615 0.00 0.00 0.00 4.18
48 49 7.686938 CCAAACTAAATACATCGAAAACTCGTC 59.313 37.037 0.00 0.00 0.00 4.20
49 50 7.878477 AACTAAATACATCGAAAACTCGTCA 57.122 32.000 0.00 0.00 0.00 4.35
50 51 7.507672 ACTAAATACATCGAAAACTCGTCAG 57.492 36.000 0.00 0.00 0.00 3.51
51 52 7.310664 ACTAAATACATCGAAAACTCGTCAGA 58.689 34.615 0.00 0.00 0.00 3.27
52 53 7.811236 ACTAAATACATCGAAAACTCGTCAGAA 59.189 33.333 0.00 0.00 0.00 3.02
53 54 7.596749 AAATACATCGAAAACTCGTCAGAAT 57.403 32.000 0.00 0.00 0.00 2.40
54 55 7.596749 AATACATCGAAAACTCGTCAGAATT 57.403 32.000 0.00 0.00 0.00 2.17
55 56 5.517037 ACATCGAAAACTCGTCAGAATTC 57.483 39.130 0.00 0.00 0.00 2.17
56 57 4.988540 ACATCGAAAACTCGTCAGAATTCA 59.011 37.500 8.44 0.00 0.00 2.57
57 58 5.119279 ACATCGAAAACTCGTCAGAATTCAG 59.881 40.000 8.44 0.00 0.00 3.02
58 59 4.866921 TCGAAAACTCGTCAGAATTCAGA 58.133 39.130 8.44 1.71 0.00 3.27
59 60 4.917998 TCGAAAACTCGTCAGAATTCAGAG 59.082 41.667 8.44 12.28 35.28 3.35
60 61 4.681942 CGAAAACTCGTCAGAATTCAGAGT 59.318 41.667 8.44 12.87 43.16 3.24
61 62 5.856986 CGAAAACTCGTCAGAATTCAGAGTA 59.143 40.000 19.06 4.78 40.80 2.59
62 63 6.032985 CGAAAACTCGTCAGAATTCAGAGTAG 59.967 42.308 19.06 13.56 40.80 2.57
63 64 4.364415 ACTCGTCAGAATTCAGAGTAGC 57.636 45.455 18.00 1.61 40.00 3.58
64 65 3.759086 ACTCGTCAGAATTCAGAGTAGCA 59.241 43.478 18.00 0.00 40.00 3.49
65 66 4.098055 TCGTCAGAATTCAGAGTAGCAC 57.902 45.455 8.44 0.00 0.00 4.40
66 67 3.759086 TCGTCAGAATTCAGAGTAGCACT 59.241 43.478 8.44 0.00 0.00 4.40
67 68 4.218635 TCGTCAGAATTCAGAGTAGCACTT 59.781 41.667 8.44 0.00 0.00 3.16
68 69 4.926238 CGTCAGAATTCAGAGTAGCACTTT 59.074 41.667 8.44 0.00 0.00 2.66
69 70 5.406780 CGTCAGAATTCAGAGTAGCACTTTT 59.593 40.000 8.44 0.00 0.00 2.27
70 71 6.073548 CGTCAGAATTCAGAGTAGCACTTTTT 60.074 38.462 8.44 0.00 0.00 1.94
96 97 9.585099 TTAGAATGAATTTGGAATCGAATTTGG 57.415 29.630 0.00 0.00 37.17 3.28
97 98 7.043565 AGAATGAATTTGGAATCGAATTTGGG 58.956 34.615 0.00 0.00 37.17 4.12
98 99 4.502962 TGAATTTGGAATCGAATTTGGGC 58.497 39.130 0.00 0.00 37.17 5.36
99 100 4.020751 TGAATTTGGAATCGAATTTGGGCA 60.021 37.500 0.00 0.00 37.17 5.36
100 101 4.758773 ATTTGGAATCGAATTTGGGCAT 57.241 36.364 0.00 0.00 0.00 4.40
101 102 3.523606 TTGGAATCGAATTTGGGCATG 57.476 42.857 0.00 0.00 0.00 4.06
102 103 1.136695 TGGAATCGAATTTGGGCATGC 59.863 47.619 9.90 9.90 0.00 4.06
103 104 1.136695 GGAATCGAATTTGGGCATGCA 59.863 47.619 21.36 0.00 0.00 3.96
104 105 2.418471 GGAATCGAATTTGGGCATGCAA 60.418 45.455 21.36 5.62 0.00 4.08
105 106 2.589798 ATCGAATTTGGGCATGCAAG 57.410 45.000 21.36 1.04 0.00 4.01
106 107 1.255882 TCGAATTTGGGCATGCAAGT 58.744 45.000 21.36 4.24 0.00 3.16
107 108 1.067706 TCGAATTTGGGCATGCAAGTG 60.068 47.619 21.36 0.40 0.00 3.16
108 109 1.081094 GAATTTGGGCATGCAAGTGC 58.919 50.000 21.36 3.60 44.31 4.40
114 115 2.185867 GCATGCAAGTGCCCCATG 59.814 61.111 14.21 0.00 41.18 3.66
115 116 2.652095 GCATGCAAGTGCCCCATGT 61.652 57.895 14.21 0.00 41.18 3.21
116 117 1.216977 CATGCAAGTGCCCCATGTG 59.783 57.895 0.00 0.00 41.18 3.21
117 118 1.228956 ATGCAAGTGCCCCATGTGT 60.229 52.632 0.00 0.00 41.18 3.72
118 119 1.537814 ATGCAAGTGCCCCATGTGTG 61.538 55.000 0.00 0.00 41.18 3.82
119 120 2.202395 GCAAGTGCCCCATGTGTGT 61.202 57.895 0.00 0.00 34.31 3.72
120 121 1.661480 CAAGTGCCCCATGTGTGTG 59.339 57.895 0.00 0.00 0.00 3.82
121 122 1.108727 CAAGTGCCCCATGTGTGTGT 61.109 55.000 0.00 0.00 0.00 3.72
122 123 1.108727 AAGTGCCCCATGTGTGTGTG 61.109 55.000 0.00 0.00 0.00 3.82
123 124 1.827789 GTGCCCCATGTGTGTGTGT 60.828 57.895 0.00 0.00 0.00 3.72
124 125 1.827354 TGCCCCATGTGTGTGTGTG 60.827 57.895 0.00 0.00 0.00 3.82
125 126 1.827789 GCCCCATGTGTGTGTGTGT 60.828 57.895 0.00 0.00 0.00 3.72
126 127 2.032170 CCCCATGTGTGTGTGTGTG 58.968 57.895 0.00 0.00 0.00 3.82
127 128 0.751277 CCCCATGTGTGTGTGTGTGT 60.751 55.000 0.00 0.00 0.00 3.72
128 129 1.102154 CCCATGTGTGTGTGTGTGTT 58.898 50.000 0.00 0.00 0.00 3.32
129 130 1.476085 CCCATGTGTGTGTGTGTGTTT 59.524 47.619 0.00 0.00 0.00 2.83
130 131 2.094286 CCCATGTGTGTGTGTGTGTTTT 60.094 45.455 0.00 0.00 0.00 2.43
131 132 3.129462 CCCATGTGTGTGTGTGTGTTTTA 59.871 43.478 0.00 0.00 0.00 1.52
132 133 4.380973 CCCATGTGTGTGTGTGTGTTTTAA 60.381 41.667 0.00 0.00 0.00 1.52
133 134 5.164233 CCATGTGTGTGTGTGTGTTTTAAA 58.836 37.500 0.00 0.00 0.00 1.52
134 135 5.809562 CCATGTGTGTGTGTGTGTTTTAAAT 59.190 36.000 0.00 0.00 0.00 1.40
135 136 6.019961 CCATGTGTGTGTGTGTGTTTTAAATC 60.020 38.462 0.00 0.00 0.00 2.17
136 137 5.089411 TGTGTGTGTGTGTGTTTTAAATCG 58.911 37.500 0.00 0.00 0.00 3.34
137 138 5.090083 GTGTGTGTGTGTGTTTTAAATCGT 58.910 37.500 0.00 0.00 0.00 3.73
138 139 5.003027 GTGTGTGTGTGTGTTTTAAATCGTG 59.997 40.000 0.00 0.00 0.00 4.35
139 140 5.090083 GTGTGTGTGTGTTTTAAATCGTGT 58.910 37.500 0.00 0.00 0.00 4.49
140 141 5.226360 GTGTGTGTGTGTTTTAAATCGTGTC 59.774 40.000 0.00 0.00 0.00 3.67
141 142 5.122554 TGTGTGTGTGTTTTAAATCGTGTCT 59.877 36.000 0.00 0.00 0.00 3.41
142 143 5.675444 GTGTGTGTGTTTTAAATCGTGTCTC 59.325 40.000 0.00 0.00 0.00 3.36
143 144 5.351740 TGTGTGTGTTTTAAATCGTGTCTCA 59.648 36.000 0.00 0.00 0.00 3.27
144 145 6.037720 TGTGTGTGTTTTAAATCGTGTCTCAT 59.962 34.615 0.00 0.00 0.00 2.90
145 146 6.356977 GTGTGTGTTTTAAATCGTGTCTCATG 59.643 38.462 0.00 0.00 0.00 3.07
146 147 6.037720 TGTGTGTTTTAAATCGTGTCTCATGT 59.962 34.615 0.00 0.00 0.00 3.21
147 148 6.356977 GTGTGTTTTAAATCGTGTCTCATGTG 59.643 38.462 0.00 0.00 0.00 3.21
148 149 5.339611 GTGTTTTAAATCGTGTCTCATGTGC 59.660 40.000 0.00 0.00 0.00 4.57
149 150 5.008118 TGTTTTAAATCGTGTCTCATGTGCA 59.992 36.000 0.00 0.00 0.00 4.57
150 151 4.661993 TTAAATCGTGTCTCATGTGCAC 57.338 40.909 10.75 10.75 0.00 4.57
151 152 2.168326 AATCGTGTCTCATGTGCACA 57.832 45.000 24.08 24.08 33.70 4.57
152 153 1.432514 ATCGTGTCTCATGTGCACAC 58.567 50.000 24.37 9.76 37.63 3.82
153 154 0.103937 TCGTGTCTCATGTGCACACA 59.896 50.000 24.37 12.64 46.44 3.72
154 155 0.936600 CGTGTCTCATGTGCACACAA 59.063 50.000 24.37 12.33 45.41 3.33
155 156 1.070376 CGTGTCTCATGTGCACACAAG 60.070 52.381 24.37 21.38 45.41 3.16
156 157 2.212652 GTGTCTCATGTGCACACAAGA 58.787 47.619 24.37 23.31 45.41 3.02
157 158 2.613595 GTGTCTCATGTGCACACAAGAA 59.386 45.455 26.21 17.01 45.41 2.52
158 159 2.874086 TGTCTCATGTGCACACAAGAAG 59.126 45.455 26.21 17.51 45.41 2.85
159 160 2.874701 GTCTCATGTGCACACAAGAAGT 59.125 45.455 26.21 7.68 45.41 3.01
160 161 4.058124 GTCTCATGTGCACACAAGAAGTA 58.942 43.478 26.21 9.12 45.41 2.24
161 162 4.058124 TCTCATGTGCACACAAGAAGTAC 58.942 43.478 24.37 0.00 45.41 2.73
162 163 4.060900 CTCATGTGCACACAAGAAGTACT 58.939 43.478 24.37 0.00 45.41 2.73
163 164 4.058124 TCATGTGCACACAAGAAGTACTC 58.942 43.478 24.37 0.00 45.41 2.59
164 165 2.833794 TGTGCACACAAGAAGTACTCC 58.166 47.619 17.42 0.00 38.56 3.85
165 166 2.434336 TGTGCACACAAGAAGTACTCCT 59.566 45.455 17.42 0.00 38.56 3.69
166 167 3.639561 TGTGCACACAAGAAGTACTCCTA 59.360 43.478 17.42 0.00 38.56 2.94
167 168 4.283467 TGTGCACACAAGAAGTACTCCTAT 59.717 41.667 17.42 0.00 38.56 2.57
168 169 5.221641 TGTGCACACAAGAAGTACTCCTATT 60.222 40.000 17.42 0.00 38.56 1.73
169 170 5.348997 GTGCACACAAGAAGTACTCCTATTC 59.651 44.000 13.17 0.00 0.00 1.75
170 171 4.563184 GCACACAAGAAGTACTCCTATTCG 59.437 45.833 0.00 0.00 0.00 3.34
171 172 5.103000 CACACAAGAAGTACTCCTATTCGG 58.897 45.833 0.00 0.00 0.00 4.30
172 173 4.113354 CACAAGAAGTACTCCTATTCGGC 58.887 47.826 0.00 0.00 0.00 5.54
173 174 3.767673 ACAAGAAGTACTCCTATTCGGCA 59.232 43.478 0.00 0.00 0.00 5.69
174 175 4.406003 ACAAGAAGTACTCCTATTCGGCAT 59.594 41.667 0.00 0.00 0.00 4.40
175 176 4.857509 AGAAGTACTCCTATTCGGCATC 57.142 45.455 0.00 0.00 0.00 3.91
176 177 4.475345 AGAAGTACTCCTATTCGGCATCT 58.525 43.478 0.00 0.00 0.00 2.90
177 178 4.896482 AGAAGTACTCCTATTCGGCATCTT 59.104 41.667 0.00 0.00 0.00 2.40
178 179 4.592485 AGTACTCCTATTCGGCATCTTG 57.408 45.455 0.00 0.00 0.00 3.02
179 180 3.961408 AGTACTCCTATTCGGCATCTTGT 59.039 43.478 0.00 0.00 0.00 3.16
180 181 3.185246 ACTCCTATTCGGCATCTTGTG 57.815 47.619 0.00 0.00 0.00 3.33
188 189 4.895854 GCATCTTGTGCGCCAATT 57.104 50.000 4.18 0.00 45.23 2.32
189 190 2.657336 GCATCTTGTGCGCCAATTC 58.343 52.632 4.18 0.00 45.23 2.17
190 191 0.171903 GCATCTTGTGCGCCAATTCT 59.828 50.000 4.18 0.00 45.23 2.40
191 192 1.401552 GCATCTTGTGCGCCAATTCTA 59.598 47.619 4.18 0.00 45.23 2.10
192 193 2.159393 GCATCTTGTGCGCCAATTCTAA 60.159 45.455 4.18 0.00 45.23 2.10
193 194 3.429085 CATCTTGTGCGCCAATTCTAAC 58.571 45.455 4.18 0.00 31.20 2.34
194 195 2.778299 TCTTGTGCGCCAATTCTAACT 58.222 42.857 4.18 0.00 31.20 2.24
195 196 3.932822 TCTTGTGCGCCAATTCTAACTA 58.067 40.909 4.18 0.00 31.20 2.24
196 197 3.682858 TCTTGTGCGCCAATTCTAACTAC 59.317 43.478 4.18 0.00 31.20 2.73
197 198 3.046968 TGTGCGCCAATTCTAACTACA 57.953 42.857 4.18 0.00 0.00 2.74
198 199 3.403968 TGTGCGCCAATTCTAACTACAA 58.596 40.909 4.18 0.00 0.00 2.41
199 200 3.187637 TGTGCGCCAATTCTAACTACAAC 59.812 43.478 4.18 0.00 0.00 3.32
200 201 2.413796 TGCGCCAATTCTAACTACAACG 59.586 45.455 4.18 0.00 0.00 4.10
201 202 2.786700 GCGCCAATTCTAACTACAACGC 60.787 50.000 0.00 0.00 35.57 4.84
202 203 2.222953 CGCCAATTCTAACTACAACGCC 60.223 50.000 0.00 0.00 0.00 5.68
203 204 2.745281 GCCAATTCTAACTACAACGCCA 59.255 45.455 0.00 0.00 0.00 5.69
204 205 3.181510 GCCAATTCTAACTACAACGCCAG 60.182 47.826 0.00 0.00 0.00 4.85
205 206 3.181510 CCAATTCTAACTACAACGCCAGC 60.182 47.826 0.00 0.00 0.00 4.85
206 207 1.705256 TTCTAACTACAACGCCAGCG 58.295 50.000 11.05 11.05 46.03 5.18
218 219 2.503920 CGCCAGCGTAACTATAAGGT 57.496 50.000 3.35 0.00 34.35 3.50
219 220 2.124903 CGCCAGCGTAACTATAAGGTG 58.875 52.381 3.35 0.00 38.30 4.00
222 223 2.480845 CAGCGTAACTATAAGGTGGGC 58.519 52.381 0.00 0.00 36.00 5.36
223 224 1.415289 AGCGTAACTATAAGGTGGGCC 59.585 52.381 0.00 0.00 0.00 5.80
224 225 1.139455 GCGTAACTATAAGGTGGGCCA 59.861 52.381 0.00 0.00 37.19 5.36
225 226 2.224450 GCGTAACTATAAGGTGGGCCAT 60.224 50.000 10.70 0.00 37.19 4.40
226 227 3.399330 CGTAACTATAAGGTGGGCCATG 58.601 50.000 10.70 0.00 37.19 3.66
227 228 3.070446 CGTAACTATAAGGTGGGCCATGA 59.930 47.826 10.70 0.00 37.19 3.07
228 229 3.577805 AACTATAAGGTGGGCCATGAC 57.422 47.619 10.70 3.23 37.19 3.06
229 230 1.774856 ACTATAAGGTGGGCCATGACC 59.225 52.381 10.70 6.51 37.19 4.02
237 238 4.512914 GGCCATGACCCTGCCCTC 62.513 72.222 0.00 0.00 39.30 4.30
238 239 4.512914 GCCATGACCCTGCCCTCC 62.513 72.222 0.00 0.00 0.00 4.30
239 240 3.813724 CCATGACCCTGCCCTCCC 61.814 72.222 0.00 0.00 0.00 4.30
240 241 3.016971 CATGACCCTGCCCTCCCA 61.017 66.667 0.00 0.00 0.00 4.37
241 242 3.017581 ATGACCCTGCCCTCCCAC 61.018 66.667 0.00 0.00 0.00 4.61
252 253 2.038329 CTCCCACCCAGGTCGGTA 59.962 66.667 0.08 0.00 33.67 4.02
253 254 2.038329 TCCCACCCAGGTCGGTAG 59.962 66.667 0.08 0.00 33.67 3.18
254 255 3.782443 CCCACCCAGGTCGGTAGC 61.782 72.222 0.00 0.00 33.67 3.58
255 256 4.143333 CCACCCAGGTCGGTAGCG 62.143 72.222 8.29 8.29 33.67 4.26
256 257 4.814294 CACCCAGGTCGGTAGCGC 62.814 72.222 9.99 0.00 33.67 5.92
258 259 2.831742 CCCAGGTCGGTAGCGCTA 60.832 66.667 14.45 14.45 0.00 4.26
259 260 2.722487 CCAGGTCGGTAGCGCTAG 59.278 66.667 19.48 7.43 0.00 3.42
260 261 2.119655 CCAGGTCGGTAGCGCTAGT 61.120 63.158 19.48 0.00 0.00 2.57
261 262 1.664321 CCAGGTCGGTAGCGCTAGTT 61.664 60.000 19.48 0.00 0.00 2.24
262 263 0.525668 CAGGTCGGTAGCGCTAGTTG 60.526 60.000 19.48 10.72 0.00 3.16
263 264 1.877165 GGTCGGTAGCGCTAGTTGC 60.877 63.158 19.48 5.73 38.57 4.17
264 265 1.877165 GTCGGTAGCGCTAGTTGCC 60.877 63.158 19.48 14.46 38.78 4.52
265 266 2.050350 TCGGTAGCGCTAGTTGCCT 61.050 57.895 19.48 0.00 38.78 4.75
266 267 1.589196 CGGTAGCGCTAGTTGCCTC 60.589 63.158 19.48 3.68 38.78 4.70
267 268 1.227292 GGTAGCGCTAGTTGCCTCC 60.227 63.158 19.48 9.91 38.78 4.30
268 269 1.227292 GTAGCGCTAGTTGCCTCCC 60.227 63.158 19.48 0.00 38.78 4.30
269 270 1.381327 TAGCGCTAGTTGCCTCCCT 60.381 57.895 14.45 0.00 38.78 4.20
270 271 1.392710 TAGCGCTAGTTGCCTCCCTC 61.393 60.000 14.45 0.00 38.78 4.30
271 272 2.726351 GCGCTAGTTGCCTCCCTCT 61.726 63.158 0.00 0.00 38.78 3.69
272 273 1.901085 CGCTAGTTGCCTCCCTCTT 59.099 57.895 0.00 0.00 38.78 2.85
273 274 1.112113 CGCTAGTTGCCTCCCTCTTA 58.888 55.000 0.00 0.00 38.78 2.10
274 275 1.689273 CGCTAGTTGCCTCCCTCTTAT 59.311 52.381 0.00 0.00 38.78 1.73
275 276 2.103263 CGCTAGTTGCCTCCCTCTTATT 59.897 50.000 0.00 0.00 38.78 1.40
276 277 3.432326 CGCTAGTTGCCTCCCTCTTATTT 60.432 47.826 0.00 0.00 38.78 1.40
277 278 4.527944 GCTAGTTGCCTCCCTCTTATTTT 58.472 43.478 0.00 0.00 35.15 1.82
278 279 4.950475 GCTAGTTGCCTCCCTCTTATTTTT 59.050 41.667 0.00 0.00 35.15 1.94
295 296 3.425122 TTTTTCGGTCCCTTCCCAC 57.575 52.632 0.00 0.00 0.00 4.61
296 297 0.551879 TTTTTCGGTCCCTTCCCACA 59.448 50.000 0.00 0.00 0.00 4.17
297 298 0.109723 TTTTCGGTCCCTTCCCACAG 59.890 55.000 0.00 0.00 0.00 3.66
298 299 1.057851 TTTCGGTCCCTTCCCACAGT 61.058 55.000 0.00 0.00 0.00 3.55
299 300 1.057851 TTCGGTCCCTTCCCACAGTT 61.058 55.000 0.00 0.00 0.00 3.16
300 301 1.057851 TCGGTCCCTTCCCACAGTTT 61.058 55.000 0.00 0.00 0.00 2.66
301 302 0.179001 CGGTCCCTTCCCACAGTTTT 60.179 55.000 0.00 0.00 0.00 2.43
302 303 1.752788 CGGTCCCTTCCCACAGTTTTT 60.753 52.381 0.00 0.00 0.00 1.94
303 304 2.487625 CGGTCCCTTCCCACAGTTTTTA 60.488 50.000 0.00 0.00 0.00 1.52
304 305 3.774734 GGTCCCTTCCCACAGTTTTTAT 58.225 45.455 0.00 0.00 0.00 1.40
305 306 3.509967 GGTCCCTTCCCACAGTTTTTATG 59.490 47.826 0.00 0.00 0.00 1.90
306 307 3.509967 GTCCCTTCCCACAGTTTTTATGG 59.490 47.826 0.00 0.00 0.00 2.74
307 308 3.141272 TCCCTTCCCACAGTTTTTATGGT 59.859 43.478 0.00 0.00 0.00 3.55
308 309 3.901222 CCCTTCCCACAGTTTTTATGGTT 59.099 43.478 0.00 0.00 0.00 3.67
309 310 4.262420 CCCTTCCCACAGTTTTTATGGTTG 60.262 45.833 0.00 0.00 0.00 3.77
310 311 4.343814 CCTTCCCACAGTTTTTATGGTTGT 59.656 41.667 0.00 0.00 0.00 3.32
311 312 4.927978 TCCCACAGTTTTTATGGTTGTG 57.072 40.909 0.00 0.00 38.99 3.33
312 313 4.282496 TCCCACAGTTTTTATGGTTGTGT 58.718 39.130 2.74 0.00 37.91 3.72
313 314 4.712337 TCCCACAGTTTTTATGGTTGTGTT 59.288 37.500 2.74 0.00 37.91 3.32
314 315 5.892119 TCCCACAGTTTTTATGGTTGTGTTA 59.108 36.000 2.74 0.00 37.91 2.41
315 316 6.039941 TCCCACAGTTTTTATGGTTGTGTTAG 59.960 38.462 2.74 0.00 37.91 2.34
316 317 5.689961 CCACAGTTTTTATGGTTGTGTTAGC 59.310 40.000 2.74 0.00 37.91 3.09
317 318 5.689961 CACAGTTTTTATGGTTGTGTTAGCC 59.310 40.000 0.00 0.00 35.59 3.93
318 319 5.596772 ACAGTTTTTATGGTTGTGTTAGCCT 59.403 36.000 0.00 0.00 0.00 4.58
319 320 6.097696 ACAGTTTTTATGGTTGTGTTAGCCTT 59.902 34.615 0.00 0.00 0.00 4.35
320 321 6.420604 CAGTTTTTATGGTTGTGTTAGCCTTG 59.579 38.462 0.00 0.00 0.00 3.61
321 322 6.322712 AGTTTTTATGGTTGTGTTAGCCTTGA 59.677 34.615 0.00 0.00 0.00 3.02
322 323 6.716934 TTTTATGGTTGTGTTAGCCTTGAA 57.283 33.333 0.00 0.00 0.00 2.69
323 324 5.957842 TTATGGTTGTGTTAGCCTTGAAG 57.042 39.130 0.00 0.00 0.00 3.02
324 325 3.569194 TGGTTGTGTTAGCCTTGAAGA 57.431 42.857 0.00 0.00 0.00 2.87
325 326 3.892284 TGGTTGTGTTAGCCTTGAAGAA 58.108 40.909 0.00 0.00 0.00 2.52
326 327 3.630312 TGGTTGTGTTAGCCTTGAAGAAC 59.370 43.478 0.00 0.00 0.00 3.01
327 328 3.004419 GGTTGTGTTAGCCTTGAAGAACC 59.996 47.826 0.00 0.00 0.00 3.62
328 329 3.569194 TGTGTTAGCCTTGAAGAACCA 57.431 42.857 0.00 0.00 0.00 3.67
329 330 3.892284 TGTGTTAGCCTTGAAGAACCAA 58.108 40.909 0.00 0.00 0.00 3.67
330 331 4.274147 TGTGTTAGCCTTGAAGAACCAAA 58.726 39.130 0.00 0.00 0.00 3.28
331 332 4.707448 TGTGTTAGCCTTGAAGAACCAAAA 59.293 37.500 0.00 0.00 0.00 2.44
332 333 5.041287 GTGTTAGCCTTGAAGAACCAAAAC 58.959 41.667 0.00 0.00 0.00 2.43
333 334 4.707448 TGTTAGCCTTGAAGAACCAAAACA 59.293 37.500 0.00 0.00 0.00 2.83
334 335 5.186021 TGTTAGCCTTGAAGAACCAAAACAA 59.814 36.000 0.00 0.00 0.00 2.83
335 336 4.123497 AGCCTTGAAGAACCAAAACAAC 57.877 40.909 0.00 0.00 0.00 3.32
336 337 3.769300 AGCCTTGAAGAACCAAAACAACT 59.231 39.130 0.00 0.00 0.00 3.16
337 338 4.112634 GCCTTGAAGAACCAAAACAACTC 58.887 43.478 0.00 0.00 0.00 3.01
338 339 4.682787 CCTTGAAGAACCAAAACAACTCC 58.317 43.478 0.00 0.00 0.00 3.85
339 340 4.402474 CCTTGAAGAACCAAAACAACTCCT 59.598 41.667 0.00 0.00 0.00 3.69
340 341 5.592688 CCTTGAAGAACCAAAACAACTCCTA 59.407 40.000 0.00 0.00 0.00 2.94
341 342 6.238759 CCTTGAAGAACCAAAACAACTCCTAG 60.239 42.308 0.00 0.00 0.00 3.02
342 343 5.996644 TGAAGAACCAAAACAACTCCTAGA 58.003 37.500 0.00 0.00 0.00 2.43
343 344 6.419791 TGAAGAACCAAAACAACTCCTAGAA 58.580 36.000 0.00 0.00 0.00 2.10
344 345 6.887545 TGAAGAACCAAAACAACTCCTAGAAA 59.112 34.615 0.00 0.00 0.00 2.52
345 346 7.394923 TGAAGAACCAAAACAACTCCTAGAAAA 59.605 33.333 0.00 0.00 0.00 2.29
346 347 7.712204 AGAACCAAAACAACTCCTAGAAAAA 57.288 32.000 0.00 0.00 0.00 1.94
446 447 5.845391 AAAAATCTTCGTGGACTTGGAAA 57.155 34.783 0.00 0.00 0.00 3.13
447 448 5.845391 AAAATCTTCGTGGACTTGGAAAA 57.155 34.783 0.00 0.00 0.00 2.29
448 449 6.405278 AAAATCTTCGTGGACTTGGAAAAT 57.595 33.333 0.00 0.00 0.00 1.82
449 450 6.405278 AAATCTTCGTGGACTTGGAAAATT 57.595 33.333 0.00 0.00 0.00 1.82
450 451 6.405278 AATCTTCGTGGACTTGGAAAATTT 57.595 33.333 0.00 0.00 0.00 1.82
451 452 5.432885 TCTTCGTGGACTTGGAAAATTTC 57.567 39.130 0.00 0.00 0.00 2.17
452 453 4.884744 TCTTCGTGGACTTGGAAAATTTCA 59.115 37.500 8.09 0.00 0.00 2.69
453 454 5.358442 TCTTCGTGGACTTGGAAAATTTCAA 59.642 36.000 8.09 0.00 0.00 2.69
454 455 5.181690 TCGTGGACTTGGAAAATTTCAAG 57.818 39.130 14.80 14.80 44.14 3.02
485 486 7.878547 AAAAATGCTCAAGAATTTGGGAAAA 57.121 28.000 0.00 0.00 36.90 2.29
486 487 7.878547 AAAATGCTCAAGAATTTGGGAAAAA 57.121 28.000 0.00 0.00 36.90 1.94
566 567 7.938140 AAAATATTCAATCCGAAGTCCAAGA 57.062 32.000 0.00 0.00 36.95 3.02
567 568 7.938140 AAATATTCAATCCGAAGTCCAAGAA 57.062 32.000 0.00 0.00 36.95 2.52
568 569 8.525290 AAATATTCAATCCGAAGTCCAAGAAT 57.475 30.769 0.00 0.00 36.95 2.40
569 570 9.627123 AAATATTCAATCCGAAGTCCAAGAATA 57.373 29.630 0.00 0.00 36.95 1.75
570 571 9.627123 AATATTCAATCCGAAGTCCAAGAATAA 57.373 29.630 0.00 0.00 36.95 1.40
571 572 9.799106 ATATTCAATCCGAAGTCCAAGAATAAT 57.201 29.630 0.00 0.00 36.95 1.28
573 574 9.799106 ATTCAATCCGAAGTCCAAGAATAATAT 57.201 29.630 0.00 0.00 36.95 1.28
574 575 9.627123 TTCAATCCGAAGTCCAAGAATAATATT 57.373 29.630 0.00 0.00 0.00 1.28
575 576 9.627123 TCAATCCGAAGTCCAAGAATAATATTT 57.373 29.630 0.00 0.00 0.00 1.40
644 645 9.851686 ATACAATCCTTGTCATATTAGCAAAGA 57.148 29.630 0.00 0.00 44.12 2.52
645 646 8.757982 ACAATCCTTGTCATATTAGCAAAGAT 57.242 30.769 0.00 0.00 40.56 2.40
646 647 9.193806 ACAATCCTTGTCATATTAGCAAAGATT 57.806 29.630 0.00 0.00 40.56 2.40
650 651 8.469200 TCCTTGTCATATTAGCAAAGATTTTGG 58.531 33.333 3.97 0.00 0.00 3.28
651 652 8.253113 CCTTGTCATATTAGCAAAGATTTTGGT 58.747 33.333 10.56 10.56 0.00 3.67
652 653 9.643693 CTTGTCATATTAGCAAAGATTTTGGTT 57.356 29.630 10.94 0.00 0.00 3.67
653 654 9.638239 TTGTCATATTAGCAAAGATTTTGGTTC 57.362 29.630 10.94 0.00 0.00 3.62
654 655 8.801299 TGTCATATTAGCAAAGATTTTGGTTCA 58.199 29.630 10.94 0.95 0.00 3.18
655 656 9.638239 GTCATATTAGCAAAGATTTTGGTTCAA 57.362 29.630 10.94 2.39 0.00 2.69
678 679 9.874205 TCAAAATCCTTTAATTTCATTAGCCAG 57.126 29.630 0.00 0.00 0.00 4.85
679 680 8.606602 CAAAATCCTTTAATTTCATTAGCCAGC 58.393 33.333 0.00 0.00 0.00 4.85
680 681 5.852282 TCCTTTAATTTCATTAGCCAGCC 57.148 39.130 0.00 0.00 0.00 4.85
681 682 4.649218 TCCTTTAATTTCATTAGCCAGCCC 59.351 41.667 0.00 0.00 0.00 5.19
682 683 4.202253 CCTTTAATTTCATTAGCCAGCCCC 60.202 45.833 0.00 0.00 0.00 5.80
683 684 2.548464 AATTTCATTAGCCAGCCCCA 57.452 45.000 0.00 0.00 0.00 4.96
684 685 1.780503 ATTTCATTAGCCAGCCCCAC 58.219 50.000 0.00 0.00 0.00 4.61
685 686 0.324275 TTTCATTAGCCAGCCCCACC 60.324 55.000 0.00 0.00 0.00 4.61
686 687 1.214305 TTCATTAGCCAGCCCCACCT 61.214 55.000 0.00 0.00 0.00 4.00
687 688 1.214305 TCATTAGCCAGCCCCACCTT 61.214 55.000 0.00 0.00 0.00 3.50
688 689 0.324645 CATTAGCCAGCCCCACCTTT 60.325 55.000 0.00 0.00 0.00 3.11
689 690 0.413434 ATTAGCCAGCCCCACCTTTT 59.587 50.000 0.00 0.00 0.00 2.27
690 691 0.189822 TTAGCCAGCCCCACCTTTTT 59.810 50.000 0.00 0.00 0.00 1.94
691 692 0.251608 TAGCCAGCCCCACCTTTTTC 60.252 55.000 0.00 0.00 0.00 2.29
692 693 1.533994 GCCAGCCCCACCTTTTTCT 60.534 57.895 0.00 0.00 0.00 2.52
693 694 0.251608 GCCAGCCCCACCTTTTTCTA 60.252 55.000 0.00 0.00 0.00 2.10
694 695 1.619704 GCCAGCCCCACCTTTTTCTAT 60.620 52.381 0.00 0.00 0.00 1.98
695 696 2.102578 CCAGCCCCACCTTTTTCTATG 58.897 52.381 0.00 0.00 0.00 2.23
696 697 1.478105 CAGCCCCACCTTTTTCTATGC 59.522 52.381 0.00 0.00 0.00 3.14
697 698 1.359130 AGCCCCACCTTTTTCTATGCT 59.641 47.619 0.00 0.00 0.00 3.79
698 699 2.580783 AGCCCCACCTTTTTCTATGCTA 59.419 45.455 0.00 0.00 0.00 3.49
699 700 2.688446 GCCCCACCTTTTTCTATGCTAC 59.312 50.000 0.00 0.00 0.00 3.58
700 701 2.943033 CCCCACCTTTTTCTATGCTACG 59.057 50.000 0.00 0.00 0.00 3.51
701 702 3.370103 CCCCACCTTTTTCTATGCTACGA 60.370 47.826 0.00 0.00 0.00 3.43
702 703 4.451900 CCCACCTTTTTCTATGCTACGAT 58.548 43.478 0.00 0.00 0.00 3.73
703 704 4.881850 CCCACCTTTTTCTATGCTACGATT 59.118 41.667 0.00 0.00 0.00 3.34
704 705 5.357032 CCCACCTTTTTCTATGCTACGATTT 59.643 40.000 0.00 0.00 0.00 2.17
705 706 6.458342 CCCACCTTTTTCTATGCTACGATTTC 60.458 42.308 0.00 0.00 0.00 2.17
706 707 6.316390 CCACCTTTTTCTATGCTACGATTTCT 59.684 38.462 0.00 0.00 0.00 2.52
707 708 7.182761 CACCTTTTTCTATGCTACGATTTCTG 58.817 38.462 0.00 0.00 0.00 3.02
708 709 7.064609 CACCTTTTTCTATGCTACGATTTCTGA 59.935 37.037 0.00 0.00 0.00 3.27
709 710 7.278868 ACCTTTTTCTATGCTACGATTTCTGAG 59.721 37.037 0.00 0.00 0.00 3.35
710 711 7.254590 CCTTTTTCTATGCTACGATTTCTGAGG 60.255 40.741 0.00 0.00 0.00 3.86
711 712 4.244425 TCTATGCTACGATTTCTGAGGC 57.756 45.455 0.00 0.00 0.00 4.70
712 713 2.246719 ATGCTACGATTTCTGAGGCC 57.753 50.000 0.00 0.00 0.00 5.19
713 714 1.195115 TGCTACGATTTCTGAGGCCT 58.805 50.000 3.86 3.86 0.00 5.19
714 715 1.555075 TGCTACGATTTCTGAGGCCTT 59.445 47.619 6.77 0.00 0.00 4.35
715 716 2.764010 TGCTACGATTTCTGAGGCCTTA 59.236 45.455 6.77 0.00 0.00 2.69
716 717 3.388024 TGCTACGATTTCTGAGGCCTTAT 59.612 43.478 6.77 0.00 0.00 1.73
717 718 4.141711 TGCTACGATTTCTGAGGCCTTATT 60.142 41.667 6.77 0.00 0.00 1.40
718 719 4.816925 GCTACGATTTCTGAGGCCTTATTT 59.183 41.667 6.77 0.00 0.00 1.40
719 720 5.989777 GCTACGATTTCTGAGGCCTTATTTA 59.010 40.000 6.77 0.00 0.00 1.40
720 721 6.146347 GCTACGATTTCTGAGGCCTTATTTAG 59.854 42.308 6.77 0.90 0.00 1.85
721 722 4.816925 ACGATTTCTGAGGCCTTATTTAGC 59.183 41.667 6.77 0.00 0.00 3.09
722 723 5.059833 CGATTTCTGAGGCCTTATTTAGCT 58.940 41.667 6.77 0.00 0.00 3.32
723 724 5.529060 CGATTTCTGAGGCCTTATTTAGCTT 59.471 40.000 6.77 0.00 0.00 3.74
724 725 6.512415 CGATTTCTGAGGCCTTATTTAGCTTG 60.512 42.308 6.77 0.00 0.00 4.01
725 726 4.156455 TCTGAGGCCTTATTTAGCTTGG 57.844 45.455 6.77 0.00 0.00 3.61
726 727 3.117888 TCTGAGGCCTTATTTAGCTTGGG 60.118 47.826 6.77 0.00 0.00 4.12
727 728 2.580783 TGAGGCCTTATTTAGCTTGGGT 59.419 45.455 6.77 0.00 0.00 4.51
728 729 3.783642 TGAGGCCTTATTTAGCTTGGGTA 59.216 43.478 6.77 0.00 0.00 3.69
729 730 4.135306 GAGGCCTTATTTAGCTTGGGTAC 58.865 47.826 6.77 0.00 0.00 3.34
877 893 6.093495 TGTCTTATCCGCATTAGACAAAAAGG 59.907 38.462 5.73 0.00 42.84 3.11
878 894 5.588648 TCTTATCCGCATTAGACAAAAAGGG 59.411 40.000 0.00 0.00 0.00 3.95
884 900 5.158494 CGCATTAGACAAAAAGGGGTAAAC 58.842 41.667 0.00 0.00 0.00 2.01
972 999 6.259387 TGCAGCAATAGATGTCTTTCACATAG 59.741 38.462 0.00 0.00 46.53 2.23
1013 1041 4.274950 TCCTTTTCGAATGACAGTTCCAAC 59.725 41.667 0.00 0.00 0.00 3.77
1019 1047 4.638421 TCGAATGACAGTTCCAACAAAACT 59.362 37.500 0.00 0.00 37.44 2.66
1026 1054 5.875930 ACAGTTCCAACAAAACTTACTTCG 58.124 37.500 0.00 0.00 34.79 3.79
1037 1065 8.614994 ACAAAACTTACTTCGATGTCAAAAAG 57.385 30.769 7.29 8.40 0.00 2.27
1059 1087 8.502161 AAAGGCGTATTCATAAAAATAATCGC 57.498 30.769 0.00 0.00 36.58 4.58
1151 1179 2.676748 TGAGCATCCAAAACCAAAGGT 58.323 42.857 0.00 0.00 37.65 3.50
1326 1354 9.936759 GAAAATAGATAAATGAAAACCCCAACA 57.063 29.630 0.00 0.00 0.00 3.33
1330 1358 9.942850 ATAGATAAATGAAAACCCCAACAAAAG 57.057 29.630 0.00 0.00 0.00 2.27
1331 1359 8.028652 AGATAAATGAAAACCCCAACAAAAGA 57.971 30.769 0.00 0.00 0.00 2.52
1332 1360 8.490311 AGATAAATGAAAACCCCAACAAAAGAA 58.510 29.630 0.00 0.00 0.00 2.52
1333 1361 6.751514 AAATGAAAACCCCAACAAAAGAAC 57.248 33.333 0.00 0.00 0.00 3.01
1334 1362 4.891992 TGAAAACCCCAACAAAAGAACA 57.108 36.364 0.00 0.00 0.00 3.18
1335 1363 5.228945 TGAAAACCCCAACAAAAGAACAA 57.771 34.783 0.00 0.00 0.00 2.83
1336 1364 5.621193 TGAAAACCCCAACAAAAGAACAAA 58.379 33.333 0.00 0.00 0.00 2.83
1337 1365 6.062095 TGAAAACCCCAACAAAAGAACAAAA 58.938 32.000 0.00 0.00 0.00 2.44
1338 1366 6.546034 TGAAAACCCCAACAAAAGAACAAAAA 59.454 30.769 0.00 0.00 0.00 1.94
1339 1367 5.950758 AACCCCAACAAAAGAACAAAAAC 57.049 34.783 0.00 0.00 0.00 2.43
1340 1368 4.328536 ACCCCAACAAAAGAACAAAAACC 58.671 39.130 0.00 0.00 0.00 3.27
1341 1369 4.202472 ACCCCAACAAAAGAACAAAAACCA 60.202 37.500 0.00 0.00 0.00 3.67
1342 1370 4.946772 CCCCAACAAAAGAACAAAAACCAT 59.053 37.500 0.00 0.00 0.00 3.55
1343 1371 5.417266 CCCCAACAAAAGAACAAAAACCATT 59.583 36.000 0.00 0.00 0.00 3.16
1344 1372 6.071672 CCCCAACAAAAGAACAAAAACCATTT 60.072 34.615 0.00 0.00 0.00 2.32
1345 1373 7.121315 CCCCAACAAAAGAACAAAAACCATTTA 59.879 33.333 0.00 0.00 0.00 1.40
1346 1374 8.515414 CCCAACAAAAGAACAAAAACCATTTAA 58.485 29.630 0.00 0.00 0.00 1.52
1347 1375 9.899226 CCAACAAAAGAACAAAAACCATTTAAA 57.101 25.926 0.00 0.00 0.00 1.52
1354 1382 9.495572 AAGAACAAAAACCATTTAAAGACAACA 57.504 25.926 0.00 0.00 0.00 3.33
1355 1383 9.665719 AGAACAAAAACCATTTAAAGACAACAT 57.334 25.926 0.00 0.00 0.00 2.71
1362 1390 8.567285 AACCATTTAAAGACAACATAGAGAGG 57.433 34.615 0.00 0.00 0.00 3.69
1363 1391 7.918076 ACCATTTAAAGACAACATAGAGAGGA 58.082 34.615 0.00 0.00 0.00 3.71
1364 1392 8.383175 ACCATTTAAAGACAACATAGAGAGGAA 58.617 33.333 0.00 0.00 0.00 3.36
1365 1393 9.231297 CCATTTAAAGACAACATAGAGAGGAAA 57.769 33.333 0.00 0.00 0.00 3.13
1370 1398 7.971183 AAGACAACATAGAGAGGAAAAGAAC 57.029 36.000 0.00 0.00 0.00 3.01
1371 1399 7.067496 AGACAACATAGAGAGGAAAAGAACA 57.933 36.000 0.00 0.00 0.00 3.18
1372 1400 7.684529 AGACAACATAGAGAGGAAAAGAACAT 58.315 34.615 0.00 0.00 0.00 2.71
1373 1401 8.160106 AGACAACATAGAGAGGAAAAGAACATT 58.840 33.333 0.00 0.00 0.00 2.71
1374 1402 8.329203 ACAACATAGAGAGGAAAAGAACATTC 57.671 34.615 0.00 0.00 0.00 2.67
1375 1403 7.391833 ACAACATAGAGAGGAAAAGAACATTCC 59.608 37.037 0.00 0.00 45.50 3.01
1383 1411 5.459536 GGAAAAGAACATTCCAGAAGCTT 57.540 39.130 0.00 0.00 44.70 3.74
1384 1412 5.465051 GGAAAAGAACATTCCAGAAGCTTC 58.535 41.667 19.11 19.11 44.70 3.86
1385 1413 5.459536 AAAAGAACATTCCAGAAGCTTCC 57.540 39.130 22.81 5.35 0.00 3.46
1386 1414 3.078891 AGAACATTCCAGAAGCTTCCC 57.921 47.619 22.81 0.00 0.00 3.97
1387 1415 2.376518 AGAACATTCCAGAAGCTTCCCA 59.623 45.455 22.81 4.15 0.00 4.37
1388 1416 2.978156 ACATTCCAGAAGCTTCCCAA 57.022 45.000 22.81 13.04 0.00 4.12
1389 1417 3.243359 ACATTCCAGAAGCTTCCCAAA 57.757 42.857 22.81 14.06 0.00 3.28
1390 1418 3.575805 ACATTCCAGAAGCTTCCCAAAA 58.424 40.909 22.81 12.35 0.00 2.44
1391 1419 3.321968 ACATTCCAGAAGCTTCCCAAAAC 59.678 43.478 22.81 0.00 0.00 2.43
1392 1420 1.995376 TCCAGAAGCTTCCCAAAACC 58.005 50.000 22.81 0.00 0.00 3.27
1393 1421 1.216678 TCCAGAAGCTTCCCAAAACCA 59.783 47.619 22.81 0.00 0.00 3.67
1394 1422 1.615392 CCAGAAGCTTCCCAAAACCAG 59.385 52.381 22.81 2.33 0.00 4.00
1395 1423 1.000171 CAGAAGCTTCCCAAAACCAGC 60.000 52.381 22.81 0.00 0.00 4.85
1396 1424 0.318441 GAAGCTTCCCAAAACCAGCC 59.682 55.000 15.97 0.00 32.25 4.85
1397 1425 0.105504 AAGCTTCCCAAAACCAGCCT 60.106 50.000 0.00 0.00 32.25 4.58
1398 1426 0.777446 AGCTTCCCAAAACCAGCCTA 59.223 50.000 0.00 0.00 32.25 3.93
1399 1427 1.177401 GCTTCCCAAAACCAGCCTAG 58.823 55.000 0.00 0.00 0.00 3.02
1400 1428 1.271926 GCTTCCCAAAACCAGCCTAGA 60.272 52.381 0.00 0.00 0.00 2.43
1401 1429 2.817839 GCTTCCCAAAACCAGCCTAGAA 60.818 50.000 0.00 0.00 0.00 2.10
1402 1430 2.879103 TCCCAAAACCAGCCTAGAAG 57.121 50.000 0.00 0.00 0.00 2.85
1403 1431 1.177401 CCCAAAACCAGCCTAGAAGC 58.823 55.000 0.00 0.00 0.00 3.86
1404 1432 1.272147 CCCAAAACCAGCCTAGAAGCT 60.272 52.381 0.00 0.00 46.45 3.74
1405 1433 2.519013 CCAAAACCAGCCTAGAAGCTT 58.481 47.619 0.00 0.00 42.61 3.74
1406 1434 2.489722 CCAAAACCAGCCTAGAAGCTTC 59.510 50.000 19.11 19.11 42.61 3.86
1407 1435 3.416156 CAAAACCAGCCTAGAAGCTTCT 58.584 45.455 30.63 30.63 42.61 2.85
1408 1436 2.777832 AACCAGCCTAGAAGCTTCTG 57.222 50.000 34.26 23.69 42.61 3.02
1409 1437 3.776616 CCAGCCTAGAAGCTTCTGG 57.223 57.895 34.26 31.01 42.61 3.86
1410 1438 1.198713 CCAGCCTAGAAGCTTCTGGA 58.801 55.000 34.09 18.21 45.31 3.86
1411 1439 1.556911 CCAGCCTAGAAGCTTCTGGAA 59.443 52.381 34.09 17.53 45.31 3.53
1412 1440 2.419851 CCAGCCTAGAAGCTTCTGGAAG 60.420 54.545 34.09 24.50 45.31 3.46
1430 1458 5.912360 GGAAGCTTCCAAAATCAAAACAG 57.088 39.130 35.71 0.00 46.76 3.16
1431 1459 5.600696 GGAAGCTTCCAAAATCAAAACAGA 58.399 37.500 35.71 0.00 46.76 3.41
1432 1460 6.048509 GGAAGCTTCCAAAATCAAAACAGAA 58.951 36.000 35.71 0.00 46.76 3.02
1433 1461 6.018751 GGAAGCTTCCAAAATCAAAACAGAAC 60.019 38.462 35.71 5.83 46.76 3.01
1434 1462 5.359756 AGCTTCCAAAATCAAAACAGAACC 58.640 37.500 0.00 0.00 0.00 3.62
1435 1463 5.129320 AGCTTCCAAAATCAAAACAGAACCT 59.871 36.000 0.00 0.00 0.00 3.50
1436 1464 5.817296 GCTTCCAAAATCAAAACAGAACCTT 59.183 36.000 0.00 0.00 0.00 3.50
1437 1465 6.018751 GCTTCCAAAATCAAAACAGAACCTTC 60.019 38.462 0.00 0.00 0.00 3.46
1438 1466 6.537453 TCCAAAATCAAAACAGAACCTTCA 57.463 33.333 0.00 0.00 0.00 3.02
1439 1467 6.337356 TCCAAAATCAAAACAGAACCTTCAC 58.663 36.000 0.00 0.00 0.00 3.18
1440 1468 6.154363 TCCAAAATCAAAACAGAACCTTCACT 59.846 34.615 0.00 0.00 0.00 3.41
1441 1469 6.476706 CCAAAATCAAAACAGAACCTTCACTC 59.523 38.462 0.00 0.00 0.00 3.51
1442 1470 5.424121 AATCAAAACAGAACCTTCACTCG 57.576 39.130 0.00 0.00 0.00 4.18
1443 1471 4.131649 TCAAAACAGAACCTTCACTCGA 57.868 40.909 0.00 0.00 0.00 4.04
1444 1472 4.509616 TCAAAACAGAACCTTCACTCGAA 58.490 39.130 0.00 0.00 0.00 3.71
1448 1476 7.444183 TCAAAACAGAACCTTCACTCGAATAAT 59.556 33.333 0.00 0.00 0.00 1.28
1459 1487 5.680619 TCACTCGAATAATGCTAAATGGGT 58.319 37.500 0.00 0.00 0.00 4.51
1463 1491 7.116948 CACTCGAATAATGCTAAATGGGTCTAG 59.883 40.741 0.00 0.00 0.00 2.43
1474 1502 8.052748 TGCTAAATGGGTCTAGTCACATAAATT 58.947 33.333 5.11 0.00 30.63 1.82
1485 1513 2.234168 TCACATAAATTGACCGACGGGA 59.766 45.455 20.00 3.94 36.97 5.14
1487 1515 3.004862 ACATAAATTGACCGACGGGAAC 58.995 45.455 20.00 9.77 36.97 3.62
1488 1516 3.267483 CATAAATTGACCGACGGGAACT 58.733 45.455 20.00 0.00 36.97 3.01
1490 1518 1.519408 AATTGACCGACGGGAACTTG 58.481 50.000 20.00 0.00 36.97 3.16
1497 1525 4.250305 ACGGGAACTTGGTGCGCT 62.250 61.111 9.73 0.00 0.00 5.92
1588 1616 6.903419 AGCGATTCCTAGCAAAATATTTAGC 58.097 36.000 0.01 0.00 35.48 3.09
1591 1619 7.010023 CGATTCCTAGCAAAATATTTAGCGAC 58.990 38.462 0.01 0.00 0.00 5.19
1639 1668 4.237976 TCGGCATGGGTTTTATTCCTTA 57.762 40.909 0.00 0.00 0.00 2.69
1641 1670 3.697045 CGGCATGGGTTTTATTCCTTACA 59.303 43.478 0.00 0.00 0.00 2.41
1647 1676 6.904463 TGGGTTTTATTCCTTACAGTTTCC 57.096 37.500 0.00 0.00 0.00 3.13
1657 1686 5.003804 TCCTTACAGTTTCCTTCAGCATTC 58.996 41.667 0.00 0.00 0.00 2.67
1663 1692 5.221322 ACAGTTTCCTTCAGCATTCTTTTCC 60.221 40.000 0.00 0.00 0.00 3.13
1672 1701 7.543520 CCTTCAGCATTCTTTTCCTTTTATCAC 59.456 37.037 0.00 0.00 0.00 3.06
1681 1710 8.850454 TCTTTTCCTTTTATCACTTTGTTTCG 57.150 30.769 0.00 0.00 0.00 3.46
1842 1893 8.763601 TCCCTTTTCTATTTTGGTTCTTTTTGA 58.236 29.630 0.00 0.00 0.00 2.69
1950 2001 9.008965 TGTGTTTGATTAAATGTACATACTGCT 57.991 29.630 9.21 0.00 0.00 4.24
1982 2033 5.689383 ACTTTCATCACGTATGCAAAACT 57.311 34.783 0.00 0.00 35.38 2.66
2008 2059 8.659925 TTCAACATGCATTTAAAAGTTGTCAT 57.340 26.923 19.07 6.27 37.97 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 5.012239 TGGCAAATCTGAAATGAAGCTAGT 58.988 37.500 0.00 0.00 0.00 2.57
2 3 5.571784 TGGCAAATCTGAAATGAAGCTAG 57.428 39.130 0.00 0.00 0.00 3.42
3 4 5.981088 TTGGCAAATCTGAAATGAAGCTA 57.019 34.783 0.00 0.00 0.00 3.32
5 6 4.992951 AGTTTGGCAAATCTGAAATGAAGC 59.007 37.500 16.74 0.00 0.00 3.86
6 7 8.592105 TTTAGTTTGGCAAATCTGAAATGAAG 57.408 30.769 16.74 0.00 0.00 3.02
8 9 9.638239 GTATTTAGTTTGGCAAATCTGAAATGA 57.362 29.630 16.74 5.99 0.00 2.57
9 10 9.421806 TGTATTTAGTTTGGCAAATCTGAAATG 57.578 29.630 16.74 0.00 0.00 2.32
11 12 9.638239 GATGTATTTAGTTTGGCAAATCTGAAA 57.362 29.630 16.74 13.36 0.00 2.69
12 13 7.967854 CGATGTATTTAGTTTGGCAAATCTGAA 59.032 33.333 16.74 16.30 0.00 3.02
13 14 7.335673 TCGATGTATTTAGTTTGGCAAATCTGA 59.664 33.333 16.74 9.05 0.00 3.27
14 15 7.471721 TCGATGTATTTAGTTTGGCAAATCTG 58.528 34.615 16.74 3.61 0.00 2.90
15 16 7.624360 TCGATGTATTTAGTTTGGCAAATCT 57.376 32.000 16.74 16.12 0.00 2.40
16 17 8.682128 TTTCGATGTATTTAGTTTGGCAAATC 57.318 30.769 16.74 9.85 0.00 2.17
17 18 8.921670 GTTTTCGATGTATTTAGTTTGGCAAAT 58.078 29.630 16.74 7.90 0.00 2.32
18 19 8.138712 AGTTTTCGATGTATTTAGTTTGGCAAA 58.861 29.630 8.93 8.93 0.00 3.68
19 20 7.653647 AGTTTTCGATGTATTTAGTTTGGCAA 58.346 30.769 0.00 0.00 0.00 4.52
20 21 7.209471 AGTTTTCGATGTATTTAGTTTGGCA 57.791 32.000 0.00 0.00 0.00 4.92
21 22 7.721167 GAGTTTTCGATGTATTTAGTTTGGC 57.279 36.000 0.00 0.00 0.00 4.52
38 39 6.183360 GCTACTCTGAATTCTGACGAGTTTTC 60.183 42.308 18.31 9.50 36.46 2.29
39 40 5.635700 GCTACTCTGAATTCTGACGAGTTTT 59.364 40.000 18.31 4.67 36.46 2.43
40 41 5.164954 GCTACTCTGAATTCTGACGAGTTT 58.835 41.667 18.31 5.14 36.46 2.66
41 42 4.218635 TGCTACTCTGAATTCTGACGAGTT 59.781 41.667 18.31 8.74 36.46 3.01
42 43 3.759086 TGCTACTCTGAATTCTGACGAGT 59.241 43.478 10.68 14.99 38.40 4.18
43 44 4.101942 GTGCTACTCTGAATTCTGACGAG 58.898 47.826 10.68 11.20 0.00 4.18
44 45 3.759086 AGTGCTACTCTGAATTCTGACGA 59.241 43.478 10.68 1.98 0.00 4.20
45 46 4.103365 AGTGCTACTCTGAATTCTGACG 57.897 45.455 10.68 9.65 0.00 4.35
46 47 6.793492 AAAAGTGCTACTCTGAATTCTGAC 57.207 37.500 10.68 2.95 0.00 3.51
70 71 9.585099 CCAAATTCGATTCCAAATTCATTCTAA 57.415 29.630 0.00 0.00 0.00 2.10
71 72 8.196771 CCCAAATTCGATTCCAAATTCATTCTA 58.803 33.333 0.00 0.00 0.00 2.10
72 73 7.043565 CCCAAATTCGATTCCAAATTCATTCT 58.956 34.615 0.00 0.00 0.00 2.40
73 74 6.238184 GCCCAAATTCGATTCCAAATTCATTC 60.238 38.462 0.00 0.00 0.00 2.67
74 75 5.585844 GCCCAAATTCGATTCCAAATTCATT 59.414 36.000 0.00 0.00 0.00 2.57
75 76 5.118286 GCCCAAATTCGATTCCAAATTCAT 58.882 37.500 0.00 0.00 0.00 2.57
76 77 4.020751 TGCCCAAATTCGATTCCAAATTCA 60.021 37.500 0.00 0.00 0.00 2.57
77 78 4.502962 TGCCCAAATTCGATTCCAAATTC 58.497 39.130 0.00 0.00 0.00 2.17
78 79 4.550076 TGCCCAAATTCGATTCCAAATT 57.450 36.364 0.00 0.00 0.00 1.82
79 80 4.444536 CATGCCCAAATTCGATTCCAAAT 58.555 39.130 0.00 0.00 0.00 2.32
80 81 3.859443 CATGCCCAAATTCGATTCCAAA 58.141 40.909 0.00 0.00 0.00 3.28
81 82 2.418471 GCATGCCCAAATTCGATTCCAA 60.418 45.455 6.36 0.00 0.00 3.53
82 83 1.136695 GCATGCCCAAATTCGATTCCA 59.863 47.619 6.36 0.00 0.00 3.53
83 84 1.136695 TGCATGCCCAAATTCGATTCC 59.863 47.619 16.68 0.00 0.00 3.01
84 85 2.582728 TGCATGCCCAAATTCGATTC 57.417 45.000 16.68 0.00 0.00 2.52
85 86 2.234414 ACTTGCATGCCCAAATTCGATT 59.766 40.909 16.68 0.00 0.00 3.34
86 87 1.826720 ACTTGCATGCCCAAATTCGAT 59.173 42.857 16.68 0.00 0.00 3.59
87 88 1.067706 CACTTGCATGCCCAAATTCGA 60.068 47.619 16.68 0.00 0.00 3.71
88 89 1.352114 CACTTGCATGCCCAAATTCG 58.648 50.000 16.68 0.00 0.00 3.34
89 90 1.081094 GCACTTGCATGCCCAAATTC 58.919 50.000 16.68 0.00 39.86 2.17
90 91 3.236604 GCACTTGCATGCCCAAATT 57.763 47.368 16.68 0.00 39.86 1.82
97 98 2.185867 CATGGGGCACTTGCATGC 59.814 61.111 11.82 11.82 45.34 4.06
98 99 1.216977 CACATGGGGCACTTGCATG 59.783 57.895 2.02 2.51 44.36 4.06
99 100 1.228956 ACACATGGGGCACTTGCAT 60.229 52.632 0.00 0.00 44.36 3.96
100 101 2.198150 ACACATGGGGCACTTGCA 59.802 55.556 0.00 0.00 44.36 4.08
101 102 2.202395 ACACACATGGGGCACTTGC 61.202 57.895 0.00 0.00 41.14 4.01
102 103 1.108727 ACACACACATGGGGCACTTG 61.109 55.000 0.00 0.37 31.22 3.16
103 104 1.108727 CACACACACATGGGGCACTT 61.109 55.000 0.00 0.00 31.22 3.16
104 105 1.529010 CACACACACATGGGGCACT 60.529 57.895 0.00 0.00 31.22 4.40
105 106 1.827789 ACACACACACATGGGGCAC 60.828 57.895 0.00 0.00 31.22 5.01
106 107 1.827354 CACACACACACATGGGGCA 60.827 57.895 0.00 0.00 31.22 5.36
107 108 1.827789 ACACACACACACATGGGGC 60.828 57.895 0.00 0.00 31.22 5.80
108 109 0.751277 ACACACACACACACATGGGG 60.751 55.000 0.00 0.00 31.22 4.96
109 110 1.102154 AACACACACACACACATGGG 58.898 50.000 0.00 0.00 34.29 4.00
110 111 2.937469 AAACACACACACACACATGG 57.063 45.000 0.00 0.00 0.00 3.66
111 112 6.291008 CGATTTAAAACACACACACACACATG 60.291 38.462 0.00 0.00 0.00 3.21
112 113 5.741510 CGATTTAAAACACACACACACACAT 59.258 36.000 0.00 0.00 0.00 3.21
113 114 5.089411 CGATTTAAAACACACACACACACA 58.911 37.500 0.00 0.00 0.00 3.72
114 115 5.003027 CACGATTTAAAACACACACACACAC 59.997 40.000 0.00 0.00 0.00 3.82
115 116 5.089411 CACGATTTAAAACACACACACACA 58.911 37.500 0.00 0.00 0.00 3.72
116 117 5.090083 ACACGATTTAAAACACACACACAC 58.910 37.500 0.00 0.00 0.00 3.82
117 118 5.122554 AGACACGATTTAAAACACACACACA 59.877 36.000 0.00 0.00 0.00 3.72
118 119 5.565695 AGACACGATTTAAAACACACACAC 58.434 37.500 0.00 0.00 0.00 3.82
119 120 5.351740 TGAGACACGATTTAAAACACACACA 59.648 36.000 0.00 0.00 0.00 3.72
120 121 5.802064 TGAGACACGATTTAAAACACACAC 58.198 37.500 0.00 0.00 0.00 3.82
121 122 6.037720 ACATGAGACACGATTTAAAACACACA 59.962 34.615 0.00 0.00 0.00 3.72
122 123 6.356977 CACATGAGACACGATTTAAAACACAC 59.643 38.462 0.00 0.00 0.00 3.82
123 124 6.426327 CACATGAGACACGATTTAAAACACA 58.574 36.000 0.00 0.00 0.00 3.72
124 125 5.339611 GCACATGAGACACGATTTAAAACAC 59.660 40.000 0.00 0.00 0.00 3.32
125 126 5.008118 TGCACATGAGACACGATTTAAAACA 59.992 36.000 0.00 0.00 0.00 2.83
126 127 5.339611 GTGCACATGAGACACGATTTAAAAC 59.660 40.000 13.17 0.00 0.00 2.43
127 128 5.008118 TGTGCACATGAGACACGATTTAAAA 59.992 36.000 17.42 0.00 37.11 1.52
128 129 4.513318 TGTGCACATGAGACACGATTTAAA 59.487 37.500 17.42 0.00 37.11 1.52
129 130 4.061596 TGTGCACATGAGACACGATTTAA 58.938 39.130 17.42 0.00 37.11 1.52
130 131 3.431912 GTGTGCACATGAGACACGATTTA 59.568 43.478 24.69 0.00 37.11 1.40
131 132 2.224079 GTGTGCACATGAGACACGATTT 59.776 45.455 24.69 0.00 37.11 2.17
132 133 1.800586 GTGTGCACATGAGACACGATT 59.199 47.619 24.69 0.00 37.11 3.34
133 134 1.270252 TGTGTGCACATGAGACACGAT 60.270 47.619 24.69 0.00 42.43 3.73
134 135 0.103937 TGTGTGCACATGAGACACGA 59.896 50.000 24.69 0.00 42.43 4.35
135 136 0.936600 TTGTGTGCACATGAGACACG 59.063 50.000 24.69 0.00 42.43 4.49
136 137 2.212652 TCTTGTGTGCACATGAGACAC 58.787 47.619 24.69 8.68 41.52 3.67
137 138 2.618442 TCTTGTGTGCACATGAGACA 57.382 45.000 24.69 13.07 41.52 3.41
138 139 2.874701 ACTTCTTGTGTGCACATGAGAC 59.125 45.455 24.69 10.27 43.37 3.36
139 140 3.198409 ACTTCTTGTGTGCACATGAGA 57.802 42.857 24.69 23.85 43.37 3.27
140 141 4.060900 AGTACTTCTTGTGTGCACATGAG 58.939 43.478 24.69 22.03 43.37 2.90
141 142 4.058124 GAGTACTTCTTGTGTGCACATGA 58.942 43.478 24.69 18.01 41.52 3.07
142 143 3.187227 GGAGTACTTCTTGTGTGCACATG 59.813 47.826 24.69 16.00 41.52 3.21
143 144 3.071602 AGGAGTACTTCTTGTGTGCACAT 59.928 43.478 24.69 7.51 41.52 3.21
144 145 2.434336 AGGAGTACTTCTTGTGTGCACA 59.566 45.455 17.42 17.42 39.98 4.57
145 146 3.113260 AGGAGTACTTCTTGTGTGCAC 57.887 47.619 10.75 10.75 0.00 4.57
146 147 5.479306 GAATAGGAGTACTTCTTGTGTGCA 58.521 41.667 9.53 0.00 0.00 4.57
147 148 4.563184 CGAATAGGAGTACTTCTTGTGTGC 59.437 45.833 9.53 0.00 0.00 4.57
148 149 5.103000 CCGAATAGGAGTACTTCTTGTGTG 58.897 45.833 9.53 0.00 45.00 3.82
149 150 4.381718 GCCGAATAGGAGTACTTCTTGTGT 60.382 45.833 9.53 0.00 45.00 3.72
150 151 4.113354 GCCGAATAGGAGTACTTCTTGTG 58.887 47.826 9.53 0.00 45.00 3.33
151 152 3.767673 TGCCGAATAGGAGTACTTCTTGT 59.232 43.478 9.53 0.00 45.00 3.16
152 153 4.386867 TGCCGAATAGGAGTACTTCTTG 57.613 45.455 9.53 0.00 45.00 3.02
153 154 4.896482 AGATGCCGAATAGGAGTACTTCTT 59.104 41.667 9.53 0.00 45.00 2.52
154 155 4.475345 AGATGCCGAATAGGAGTACTTCT 58.525 43.478 9.15 9.15 45.00 2.85
155 156 4.857509 AGATGCCGAATAGGAGTACTTC 57.142 45.455 0.00 0.00 45.00 3.01
156 157 4.406003 ACAAGATGCCGAATAGGAGTACTT 59.594 41.667 0.00 0.00 45.00 2.24
157 158 3.961408 ACAAGATGCCGAATAGGAGTACT 59.039 43.478 0.00 0.00 45.00 2.73
158 159 4.051922 CACAAGATGCCGAATAGGAGTAC 58.948 47.826 0.00 0.00 45.00 2.73
159 160 4.322080 CACAAGATGCCGAATAGGAGTA 57.678 45.455 0.00 0.00 45.00 2.59
160 161 3.185246 CACAAGATGCCGAATAGGAGT 57.815 47.619 0.00 0.00 45.00 3.85
172 173 3.127548 AGTTAGAATTGGCGCACAAGATG 59.872 43.478 10.83 0.00 43.48 2.90
173 174 3.347216 AGTTAGAATTGGCGCACAAGAT 58.653 40.909 10.83 4.66 43.48 2.40
174 175 2.778299 AGTTAGAATTGGCGCACAAGA 58.222 42.857 10.83 0.00 43.48 3.02
175 176 3.435327 TGTAGTTAGAATTGGCGCACAAG 59.565 43.478 10.83 0.00 43.48 3.16
176 177 3.403968 TGTAGTTAGAATTGGCGCACAA 58.596 40.909 10.83 11.94 44.54 3.33
177 178 3.046968 TGTAGTTAGAATTGGCGCACA 57.953 42.857 10.83 1.22 0.00 4.57
178 179 3.723835 CGTTGTAGTTAGAATTGGCGCAC 60.724 47.826 10.83 0.00 0.00 5.34
179 180 2.413796 CGTTGTAGTTAGAATTGGCGCA 59.586 45.455 10.83 0.00 0.00 6.09
180 181 2.786700 GCGTTGTAGTTAGAATTGGCGC 60.787 50.000 0.00 0.00 34.65 6.53
181 182 2.222953 GGCGTTGTAGTTAGAATTGGCG 60.223 50.000 0.00 0.00 0.00 5.69
182 183 2.745281 TGGCGTTGTAGTTAGAATTGGC 59.255 45.455 0.00 0.00 0.00 4.52
183 184 3.181510 GCTGGCGTTGTAGTTAGAATTGG 60.182 47.826 0.00 0.00 0.00 3.16
184 185 3.483574 CGCTGGCGTTGTAGTTAGAATTG 60.484 47.826 6.83 0.00 34.35 2.32
185 186 2.671396 CGCTGGCGTTGTAGTTAGAATT 59.329 45.455 6.83 0.00 34.35 2.17
186 187 2.268298 CGCTGGCGTTGTAGTTAGAAT 58.732 47.619 6.83 0.00 34.35 2.40
187 188 1.705256 CGCTGGCGTTGTAGTTAGAA 58.295 50.000 6.83 0.00 34.35 2.10
188 189 3.411808 CGCTGGCGTTGTAGTTAGA 57.588 52.632 6.83 0.00 34.35 2.10
199 200 2.124903 CACCTTATAGTTACGCTGGCG 58.875 52.381 13.56 13.56 46.03 5.69
200 201 2.480845 CCACCTTATAGTTACGCTGGC 58.519 52.381 0.00 0.00 0.00 4.85
201 202 2.805657 GCCCACCTTATAGTTACGCTGG 60.806 54.545 0.00 0.00 0.00 4.85
202 203 2.480845 GCCCACCTTATAGTTACGCTG 58.519 52.381 0.00 0.00 0.00 5.18
203 204 1.415289 GGCCCACCTTATAGTTACGCT 59.585 52.381 0.00 0.00 0.00 5.07
204 205 1.139455 TGGCCCACCTTATAGTTACGC 59.861 52.381 0.00 0.00 36.63 4.42
205 206 3.070446 TCATGGCCCACCTTATAGTTACG 59.930 47.826 0.00 0.00 36.63 3.18
206 207 4.386711 GTCATGGCCCACCTTATAGTTAC 58.613 47.826 0.00 0.00 36.63 2.50
207 208 3.393278 GGTCATGGCCCACCTTATAGTTA 59.607 47.826 4.49 0.00 36.63 2.24
208 209 2.174854 GGTCATGGCCCACCTTATAGTT 59.825 50.000 4.49 0.00 36.63 2.24
209 210 1.774856 GGTCATGGCCCACCTTATAGT 59.225 52.381 4.49 0.00 36.63 2.12
210 211 2.568623 GGTCATGGCCCACCTTATAG 57.431 55.000 4.49 0.00 36.63 1.31
221 222 4.512914 GGAGGGCAGGGTCATGGC 62.513 72.222 0.46 0.46 44.61 4.40
222 223 3.813724 GGGAGGGCAGGGTCATGG 61.814 72.222 0.00 0.00 0.00 3.66
223 224 3.016971 TGGGAGGGCAGGGTCATG 61.017 66.667 0.00 0.00 0.00 3.07
224 225 3.017581 GTGGGAGGGCAGGGTCAT 61.018 66.667 0.00 0.00 0.00 3.06
234 235 3.612115 TACCGACCTGGGTGGGAGG 62.612 68.421 24.07 11.73 45.16 4.30
235 236 2.038329 TACCGACCTGGGTGGGAG 59.962 66.667 24.07 2.75 45.16 4.30
236 237 2.038329 CTACCGACCTGGGTGGGA 59.962 66.667 24.07 9.67 45.16 4.37
238 239 4.143333 CGCTACCGACCTGGGTGG 62.143 72.222 0.00 1.29 44.64 4.61
239 240 4.814294 GCGCTACCGACCTGGGTG 62.814 72.222 0.00 0.00 44.64 4.61
240 241 3.650298 TAGCGCTACCGACCTGGGT 62.650 63.158 14.45 0.00 44.64 4.51
241 242 2.831742 TAGCGCTACCGACCTGGG 60.832 66.667 14.45 0.00 44.64 4.45
242 243 1.664321 AACTAGCGCTACCGACCTGG 61.664 60.000 14.45 3.61 46.41 4.45
243 244 0.525668 CAACTAGCGCTACCGACCTG 60.526 60.000 14.45 4.42 36.29 4.00
244 245 1.807886 CAACTAGCGCTACCGACCT 59.192 57.895 14.45 0.00 36.29 3.85
245 246 1.877165 GCAACTAGCGCTACCGACC 60.877 63.158 14.45 0.00 36.29 4.79
246 247 3.689411 GCAACTAGCGCTACCGAC 58.311 61.111 14.45 0.00 36.29 4.79
277 278 0.551879 TGTGGGAAGGGACCGAAAAA 59.448 50.000 0.00 0.00 0.00 1.94
278 279 0.109723 CTGTGGGAAGGGACCGAAAA 59.890 55.000 0.00 0.00 0.00 2.29
279 280 1.057851 ACTGTGGGAAGGGACCGAAA 61.058 55.000 0.00 0.00 0.00 3.46
280 281 1.057851 AACTGTGGGAAGGGACCGAA 61.058 55.000 0.00 0.00 0.00 4.30
281 282 1.057851 AAACTGTGGGAAGGGACCGA 61.058 55.000 0.00 0.00 0.00 4.69
282 283 0.179001 AAAACTGTGGGAAGGGACCG 60.179 55.000 0.00 0.00 0.00 4.79
283 284 2.082140 AAAAACTGTGGGAAGGGACC 57.918 50.000 0.00 0.00 0.00 4.46
284 285 3.509967 CCATAAAAACTGTGGGAAGGGAC 59.490 47.826 0.00 0.00 32.68 4.46
285 286 3.141272 ACCATAAAAACTGTGGGAAGGGA 59.859 43.478 0.00 0.00 40.60 4.20
286 287 3.506398 ACCATAAAAACTGTGGGAAGGG 58.494 45.455 0.00 0.00 40.60 3.95
287 288 4.343814 ACAACCATAAAAACTGTGGGAAGG 59.656 41.667 0.00 0.00 40.60 3.46
288 289 5.163457 ACACAACCATAAAAACTGTGGGAAG 60.163 40.000 5.59 0.00 40.60 3.46
289 290 4.712337 ACACAACCATAAAAACTGTGGGAA 59.288 37.500 5.59 0.00 40.60 3.97
290 291 4.282496 ACACAACCATAAAAACTGTGGGA 58.718 39.130 5.59 0.00 40.60 4.37
291 292 4.664150 ACACAACCATAAAAACTGTGGG 57.336 40.909 5.59 0.00 40.60 4.61
292 293 5.689961 GCTAACACAACCATAAAAACTGTGG 59.310 40.000 5.59 0.00 41.32 4.17
293 294 5.689961 GGCTAACACAACCATAAAAACTGTG 59.310 40.000 0.00 0.00 42.43 3.66
294 295 5.596772 AGGCTAACACAACCATAAAAACTGT 59.403 36.000 0.00 0.00 0.00 3.55
295 296 6.084326 AGGCTAACACAACCATAAAAACTG 57.916 37.500 0.00 0.00 0.00 3.16
296 297 6.322712 TCAAGGCTAACACAACCATAAAAACT 59.677 34.615 0.00 0.00 0.00 2.66
297 298 6.508777 TCAAGGCTAACACAACCATAAAAAC 58.491 36.000 0.00 0.00 0.00 2.43
298 299 6.716934 TCAAGGCTAACACAACCATAAAAA 57.283 33.333 0.00 0.00 0.00 1.94
299 300 6.547880 TCTTCAAGGCTAACACAACCATAAAA 59.452 34.615 0.00 0.00 0.00 1.52
300 301 6.065374 TCTTCAAGGCTAACACAACCATAAA 58.935 36.000 0.00 0.00 0.00 1.40
301 302 5.626142 TCTTCAAGGCTAACACAACCATAA 58.374 37.500 0.00 0.00 0.00 1.90
302 303 5.235850 TCTTCAAGGCTAACACAACCATA 57.764 39.130 0.00 0.00 0.00 2.74
303 304 4.098914 TCTTCAAGGCTAACACAACCAT 57.901 40.909 0.00 0.00 0.00 3.55
304 305 3.569194 TCTTCAAGGCTAACACAACCA 57.431 42.857 0.00 0.00 0.00 3.67
305 306 3.004419 GGTTCTTCAAGGCTAACACAACC 59.996 47.826 0.00 0.00 0.00 3.77
306 307 3.630312 TGGTTCTTCAAGGCTAACACAAC 59.370 43.478 0.00 0.00 0.00 3.32
307 308 3.892284 TGGTTCTTCAAGGCTAACACAA 58.108 40.909 0.00 0.00 0.00 3.33
308 309 3.569194 TGGTTCTTCAAGGCTAACACA 57.431 42.857 0.00 0.00 0.00 3.72
309 310 4.911514 TTTGGTTCTTCAAGGCTAACAC 57.088 40.909 0.00 0.00 0.00 3.32
310 311 4.707448 TGTTTTGGTTCTTCAAGGCTAACA 59.293 37.500 0.00 0.00 0.00 2.41
311 312 5.257082 TGTTTTGGTTCTTCAAGGCTAAC 57.743 39.130 0.00 0.00 0.00 2.34
312 313 5.420739 AGTTGTTTTGGTTCTTCAAGGCTAA 59.579 36.000 0.00 0.00 0.00 3.09
313 314 4.953579 AGTTGTTTTGGTTCTTCAAGGCTA 59.046 37.500 0.00 0.00 0.00 3.93
314 315 3.769300 AGTTGTTTTGGTTCTTCAAGGCT 59.231 39.130 0.00 0.00 0.00 4.58
315 316 4.112634 GAGTTGTTTTGGTTCTTCAAGGC 58.887 43.478 0.00 0.00 0.00 4.35
316 317 4.402474 AGGAGTTGTTTTGGTTCTTCAAGG 59.598 41.667 0.00 0.00 0.00 3.61
317 318 5.582689 AGGAGTTGTTTTGGTTCTTCAAG 57.417 39.130 0.00 0.00 0.00 3.02
318 319 6.419791 TCTAGGAGTTGTTTTGGTTCTTCAA 58.580 36.000 0.00 0.00 0.00 2.69
319 320 5.996644 TCTAGGAGTTGTTTTGGTTCTTCA 58.003 37.500 0.00 0.00 0.00 3.02
320 321 6.937436 TTCTAGGAGTTGTTTTGGTTCTTC 57.063 37.500 0.00 0.00 0.00 2.87
321 322 7.712204 TTTTCTAGGAGTTGTTTTGGTTCTT 57.288 32.000 0.00 0.00 0.00 2.52
322 323 7.712204 TTTTTCTAGGAGTTGTTTTGGTTCT 57.288 32.000 0.00 0.00 0.00 3.01
424 425 5.845391 TTTCCAAGTCCACGAAGATTTTT 57.155 34.783 0.00 0.00 0.00 1.94
425 426 5.845391 TTTTCCAAGTCCACGAAGATTTT 57.155 34.783 0.00 0.00 0.00 1.82
426 427 6.405278 AATTTTCCAAGTCCACGAAGATTT 57.595 33.333 0.00 0.00 0.00 2.17
427 428 6.040391 TGAAATTTTCCAAGTCCACGAAGATT 59.960 34.615 6.68 0.00 0.00 2.40
428 429 5.534654 TGAAATTTTCCAAGTCCACGAAGAT 59.465 36.000 6.68 0.00 0.00 2.40
429 430 4.884744 TGAAATTTTCCAAGTCCACGAAGA 59.115 37.500 6.68 0.00 0.00 2.87
430 431 5.181690 TGAAATTTTCCAAGTCCACGAAG 57.818 39.130 6.68 0.00 0.00 3.79
431 432 5.584253 TTGAAATTTTCCAAGTCCACGAA 57.416 34.783 6.68 0.00 0.00 3.85
432 433 5.181690 CTTGAAATTTTCCAAGTCCACGA 57.818 39.130 6.68 0.00 36.08 4.35
461 462 7.878547 TTTTCCCAAATTCTTGAGCATTTTT 57.121 28.000 0.00 0.00 34.14 1.94
462 463 7.878547 TTTTTCCCAAATTCTTGAGCATTTT 57.121 28.000 0.00 0.00 34.14 1.82
541 542 8.348285 TCTTGGACTTCGGATTGAATATTTTT 57.652 30.769 0.00 0.00 35.63 1.94
542 543 7.938140 TCTTGGACTTCGGATTGAATATTTT 57.062 32.000 0.00 0.00 35.63 1.82
543 544 7.938140 TTCTTGGACTTCGGATTGAATATTT 57.062 32.000 0.00 0.00 35.63 1.40
544 545 9.627123 TTATTCTTGGACTTCGGATTGAATATT 57.373 29.630 0.00 0.00 35.63 1.28
545 546 9.799106 ATTATTCTTGGACTTCGGATTGAATAT 57.201 29.630 0.00 0.00 35.63 1.28
547 548 9.799106 ATATTATTCTTGGACTTCGGATTGAAT 57.201 29.630 0.00 0.00 35.63 2.57
548 549 9.627123 AATATTATTCTTGGACTTCGGATTGAA 57.373 29.630 0.00 0.00 34.74 2.69
549 550 9.627123 AAATATTATTCTTGGACTTCGGATTGA 57.373 29.630 0.00 0.00 0.00 2.57
624 625 8.469200 CCAAAATCTTTGCTAATATGACAAGGA 58.531 33.333 0.00 0.00 34.47 3.36
625 626 8.253113 ACCAAAATCTTTGCTAATATGACAAGG 58.747 33.333 0.00 0.00 0.00 3.61
626 627 9.643693 AACCAAAATCTTTGCTAATATGACAAG 57.356 29.630 0.00 0.00 0.00 3.16
627 628 9.638239 GAACCAAAATCTTTGCTAATATGACAA 57.362 29.630 0.00 0.00 0.00 3.18
628 629 8.801299 TGAACCAAAATCTTTGCTAATATGACA 58.199 29.630 0.00 0.00 0.00 3.58
629 630 9.638239 TTGAACCAAAATCTTTGCTAATATGAC 57.362 29.630 0.00 0.00 0.00 3.06
652 653 9.874205 CTGGCTAATGAAATTAAAGGATTTTGA 57.126 29.630 0.00 0.00 38.53 2.69
653 654 8.606602 GCTGGCTAATGAAATTAAAGGATTTTG 58.393 33.333 0.00 0.00 38.53 2.44
654 655 7.770433 GGCTGGCTAATGAAATTAAAGGATTTT 59.230 33.333 0.00 0.00 38.53 1.82
655 656 7.275183 GGCTGGCTAATGAAATTAAAGGATTT 58.725 34.615 0.00 0.00 38.53 2.17
656 657 6.183361 GGGCTGGCTAATGAAATTAAAGGATT 60.183 38.462 0.00 0.00 38.53 3.01
657 658 5.305386 GGGCTGGCTAATGAAATTAAAGGAT 59.695 40.000 0.00 0.00 38.53 3.24
658 659 4.649218 GGGCTGGCTAATGAAATTAAAGGA 59.351 41.667 0.00 0.00 38.53 3.36
659 660 4.202253 GGGGCTGGCTAATGAAATTAAAGG 60.202 45.833 0.00 0.00 38.53 3.11
660 661 4.405358 TGGGGCTGGCTAATGAAATTAAAG 59.595 41.667 0.00 0.00 38.53 1.85
661 662 4.161377 GTGGGGCTGGCTAATGAAATTAAA 59.839 41.667 0.00 0.00 38.53 1.52
662 663 3.704061 GTGGGGCTGGCTAATGAAATTAA 59.296 43.478 0.00 0.00 38.53 1.40
663 664 3.295973 GTGGGGCTGGCTAATGAAATTA 58.704 45.455 0.00 0.00 37.87 1.40
664 665 2.110578 GTGGGGCTGGCTAATGAAATT 58.889 47.619 0.00 0.00 41.28 1.82
665 666 1.689258 GGTGGGGCTGGCTAATGAAAT 60.689 52.381 0.00 0.00 0.00 2.17
666 667 0.324275 GGTGGGGCTGGCTAATGAAA 60.324 55.000 0.00 0.00 0.00 2.69
667 668 1.214305 AGGTGGGGCTGGCTAATGAA 61.214 55.000 0.00 0.00 0.00 2.57
668 669 1.214305 AAGGTGGGGCTGGCTAATGA 61.214 55.000 0.00 0.00 0.00 2.57
669 670 0.324645 AAAGGTGGGGCTGGCTAATG 60.325 55.000 0.00 0.00 0.00 1.90
670 671 0.413434 AAAAGGTGGGGCTGGCTAAT 59.587 50.000 0.00 0.00 0.00 1.73
671 672 0.189822 AAAAAGGTGGGGCTGGCTAA 59.810 50.000 0.00 0.00 0.00 3.09
672 673 0.251608 GAAAAAGGTGGGGCTGGCTA 60.252 55.000 0.00 0.00 0.00 3.93
673 674 1.533994 GAAAAAGGTGGGGCTGGCT 60.534 57.895 0.00 0.00 0.00 4.75
674 675 0.251608 TAGAAAAAGGTGGGGCTGGC 60.252 55.000 0.00 0.00 0.00 4.85
675 676 2.102578 CATAGAAAAAGGTGGGGCTGG 58.897 52.381 0.00 0.00 0.00 4.85
676 677 1.478105 GCATAGAAAAAGGTGGGGCTG 59.522 52.381 0.00 0.00 0.00 4.85
677 678 1.359130 AGCATAGAAAAAGGTGGGGCT 59.641 47.619 0.00 0.00 0.00 5.19
678 679 1.852633 AGCATAGAAAAAGGTGGGGC 58.147 50.000 0.00 0.00 0.00 5.80
679 680 2.943033 CGTAGCATAGAAAAAGGTGGGG 59.057 50.000 0.00 0.00 0.00 4.96
680 681 3.869065 TCGTAGCATAGAAAAAGGTGGG 58.131 45.455 0.00 0.00 0.00 4.61
681 682 6.316390 AGAAATCGTAGCATAGAAAAAGGTGG 59.684 38.462 0.00 0.00 0.00 4.61
682 683 7.064609 TCAGAAATCGTAGCATAGAAAAAGGTG 59.935 37.037 0.00 0.00 0.00 4.00
683 684 7.103641 TCAGAAATCGTAGCATAGAAAAAGGT 58.896 34.615 0.00 0.00 0.00 3.50
684 685 7.254590 CCTCAGAAATCGTAGCATAGAAAAAGG 60.255 40.741 0.00 0.00 0.00 3.11
685 686 7.625553 CCTCAGAAATCGTAGCATAGAAAAAG 58.374 38.462 0.00 0.00 0.00 2.27
686 687 6.037172 GCCTCAGAAATCGTAGCATAGAAAAA 59.963 38.462 0.00 0.00 0.00 1.94
687 688 5.523916 GCCTCAGAAATCGTAGCATAGAAAA 59.476 40.000 0.00 0.00 0.00 2.29
688 689 5.050490 GCCTCAGAAATCGTAGCATAGAAA 58.950 41.667 0.00 0.00 0.00 2.52
689 690 4.501571 GGCCTCAGAAATCGTAGCATAGAA 60.502 45.833 0.00 0.00 0.00 2.10
690 691 3.005897 GGCCTCAGAAATCGTAGCATAGA 59.994 47.826 0.00 0.00 0.00 1.98
691 692 3.006323 AGGCCTCAGAAATCGTAGCATAG 59.994 47.826 0.00 0.00 0.00 2.23
692 693 2.965831 AGGCCTCAGAAATCGTAGCATA 59.034 45.455 0.00 0.00 0.00 3.14
693 694 1.765314 AGGCCTCAGAAATCGTAGCAT 59.235 47.619 0.00 0.00 0.00 3.79
694 695 1.195115 AGGCCTCAGAAATCGTAGCA 58.805 50.000 0.00 0.00 0.00 3.49
695 696 2.317530 AAGGCCTCAGAAATCGTAGC 57.682 50.000 5.23 0.00 0.00 3.58
696 697 6.146347 GCTAAATAAGGCCTCAGAAATCGTAG 59.854 42.308 5.23 0.00 0.00 3.51
697 698 5.989777 GCTAAATAAGGCCTCAGAAATCGTA 59.010 40.000 5.23 0.00 0.00 3.43
698 699 4.816925 GCTAAATAAGGCCTCAGAAATCGT 59.183 41.667 5.23 0.00 0.00 3.73
699 700 5.059833 AGCTAAATAAGGCCTCAGAAATCG 58.940 41.667 5.23 0.00 0.00 3.34
700 701 6.238869 CCAAGCTAAATAAGGCCTCAGAAATC 60.239 42.308 5.23 0.00 0.00 2.17
701 702 5.595952 CCAAGCTAAATAAGGCCTCAGAAAT 59.404 40.000 5.23 0.00 0.00 2.17
702 703 4.949856 CCAAGCTAAATAAGGCCTCAGAAA 59.050 41.667 5.23 0.00 0.00 2.52
703 704 4.526970 CCAAGCTAAATAAGGCCTCAGAA 58.473 43.478 5.23 0.00 0.00 3.02
704 705 3.117888 CCCAAGCTAAATAAGGCCTCAGA 60.118 47.826 5.23 0.00 0.00 3.27
705 706 3.217626 CCCAAGCTAAATAAGGCCTCAG 58.782 50.000 5.23 0.00 0.00 3.35
706 707 2.580783 ACCCAAGCTAAATAAGGCCTCA 59.419 45.455 5.23 0.00 0.00 3.86
707 708 3.298686 ACCCAAGCTAAATAAGGCCTC 57.701 47.619 5.23 0.00 0.00 4.70
708 709 3.117625 GGTACCCAAGCTAAATAAGGCCT 60.118 47.826 0.00 0.00 0.00 5.19
709 710 3.220110 GGTACCCAAGCTAAATAAGGCC 58.780 50.000 0.00 0.00 0.00 5.19
710 711 3.630769 GTGGTACCCAAGCTAAATAAGGC 59.369 47.826 10.07 0.00 34.18 4.35
711 712 5.112129 AGTGGTACCCAAGCTAAATAAGG 57.888 43.478 10.07 0.00 34.18 2.69
712 713 8.570068 TTAAAGTGGTACCCAAGCTAAATAAG 57.430 34.615 10.07 0.00 34.18 1.73
713 714 8.937207 TTTAAAGTGGTACCCAAGCTAAATAA 57.063 30.769 10.07 1.83 34.18 1.40
714 715 9.536510 AATTTAAAGTGGTACCCAAGCTAAATA 57.463 29.630 10.07 0.00 34.18 1.40
715 716 8.311109 CAATTTAAAGTGGTACCCAAGCTAAAT 58.689 33.333 10.07 9.31 34.18 1.40
716 717 7.506261 TCAATTTAAAGTGGTACCCAAGCTAAA 59.494 33.333 15.06 7.48 34.18 1.85
717 718 7.005296 TCAATTTAAAGTGGTACCCAAGCTAA 58.995 34.615 15.06 0.00 34.18 3.09
718 719 6.544650 TCAATTTAAAGTGGTACCCAAGCTA 58.455 36.000 15.06 0.00 34.18 3.32
719 720 5.390387 TCAATTTAAAGTGGTACCCAAGCT 58.610 37.500 15.06 0.00 34.18 3.74
720 721 5.715434 TCAATTTAAAGTGGTACCCAAGC 57.285 39.130 15.06 0.00 34.18 4.01
847 861 6.582636 TGTCTAATGCGGATAAGACAAGAAT 58.417 36.000 1.73 0.00 43.90 2.40
849 863 5.592104 TGTCTAATGCGGATAAGACAAGA 57.408 39.130 1.73 0.00 43.90 3.02
984 1011 8.079809 GGAACTGTCATTCGAAAAGGAAATTAA 58.920 33.333 0.00 0.00 0.00 1.40
997 1025 4.920376 AGTTTTGTTGGAACTGTCATTCG 58.080 39.130 0.00 0.00 36.08 3.34
1003 1031 5.644636 TCGAAGTAAGTTTTGTTGGAACTGT 59.355 36.000 0.00 0.00 37.41 3.55
1013 1041 7.305993 GCCTTTTTGACATCGAAGTAAGTTTTG 60.306 37.037 0.00 0.00 0.00 2.44
1019 1047 3.810941 ACGCCTTTTTGACATCGAAGTAA 59.189 39.130 0.00 0.00 0.00 2.24
1026 1054 8.682128 TTTTATGAATACGCCTTTTTGACATC 57.318 30.769 0.00 0.00 0.00 3.06
1037 1065 7.801315 TCTTGCGATTATTTTTATGAATACGCC 59.199 33.333 0.00 0.00 36.74 5.68
1055 1083 8.141268 TGGAAAAATAAGTCTTTTTCTTGCGAT 58.859 29.630 16.91 0.00 46.79 4.58
1057 1085 7.692908 TGGAAAAATAAGTCTTTTTCTTGCG 57.307 32.000 16.91 0.00 46.79 4.85
1100 1128 9.430838 CGCTAGAAAATGATCTTGATTTTACTG 57.569 33.333 0.00 0.00 34.00 2.74
1122 1150 3.552132 TTTGGATGCTCATTACCGCTA 57.448 42.857 0.00 0.00 0.00 4.26
1156 1184 7.707774 TCTTTTTATTTGTTTGTTGCCTAGC 57.292 32.000 0.00 0.00 0.00 3.42
1159 1187 9.786105 CAAAATCTTTTTATTTGTTTGTTGCCT 57.214 25.926 0.00 0.00 31.17 4.75
1300 1328 9.936759 TGTTGGGGTTTTCATTTATCTATTTTC 57.063 29.630 0.00 0.00 0.00 2.29
1304 1332 9.942850 CTTTTGTTGGGGTTTTCATTTATCTAT 57.057 29.630 0.00 0.00 0.00 1.98
1305 1333 9.148879 TCTTTTGTTGGGGTTTTCATTTATCTA 57.851 29.630 0.00 0.00 0.00 1.98
1306 1334 8.028652 TCTTTTGTTGGGGTTTTCATTTATCT 57.971 30.769 0.00 0.00 0.00 1.98
1307 1335 8.556194 GTTCTTTTGTTGGGGTTTTCATTTATC 58.444 33.333 0.00 0.00 0.00 1.75
1308 1336 8.049721 TGTTCTTTTGTTGGGGTTTTCATTTAT 58.950 29.630 0.00 0.00 0.00 1.40
1309 1337 7.394816 TGTTCTTTTGTTGGGGTTTTCATTTA 58.605 30.769 0.00 0.00 0.00 1.40
1310 1338 6.241645 TGTTCTTTTGTTGGGGTTTTCATTT 58.758 32.000 0.00 0.00 0.00 2.32
1311 1339 5.810095 TGTTCTTTTGTTGGGGTTTTCATT 58.190 33.333 0.00 0.00 0.00 2.57
1312 1340 5.428184 TGTTCTTTTGTTGGGGTTTTCAT 57.572 34.783 0.00 0.00 0.00 2.57
1313 1341 4.891992 TGTTCTTTTGTTGGGGTTTTCA 57.108 36.364 0.00 0.00 0.00 2.69
1314 1342 6.561737 TTTTGTTCTTTTGTTGGGGTTTTC 57.438 33.333 0.00 0.00 0.00 2.29
1315 1343 6.239064 GGTTTTTGTTCTTTTGTTGGGGTTTT 60.239 34.615 0.00 0.00 0.00 2.43
1316 1344 5.241949 GGTTTTTGTTCTTTTGTTGGGGTTT 59.758 36.000 0.00 0.00 0.00 3.27
1317 1345 4.762765 GGTTTTTGTTCTTTTGTTGGGGTT 59.237 37.500 0.00 0.00 0.00 4.11
1318 1346 4.202472 TGGTTTTTGTTCTTTTGTTGGGGT 60.202 37.500 0.00 0.00 0.00 4.95
1319 1347 4.327680 TGGTTTTTGTTCTTTTGTTGGGG 58.672 39.130 0.00 0.00 0.00 4.96
1320 1348 6.507958 AATGGTTTTTGTTCTTTTGTTGGG 57.492 33.333 0.00 0.00 0.00 4.12
1321 1349 9.899226 TTTAAATGGTTTTTGTTCTTTTGTTGG 57.101 25.926 0.00 0.00 0.00 3.77
1328 1356 9.495572 TGTTGTCTTTAAATGGTTTTTGTTCTT 57.504 25.926 0.00 0.00 0.00 2.52
1329 1357 9.665719 ATGTTGTCTTTAAATGGTTTTTGTTCT 57.334 25.926 0.00 0.00 0.00 3.01
1336 1364 9.014297 CCTCTCTATGTTGTCTTTAAATGGTTT 57.986 33.333 0.00 0.00 0.00 3.27
1337 1365 8.383175 TCCTCTCTATGTTGTCTTTAAATGGTT 58.617 33.333 0.00 0.00 0.00 3.67
1338 1366 7.918076 TCCTCTCTATGTTGTCTTTAAATGGT 58.082 34.615 0.00 0.00 0.00 3.55
1339 1367 8.792830 TTCCTCTCTATGTTGTCTTTAAATGG 57.207 34.615 0.00 0.00 0.00 3.16
1344 1372 9.490379 GTTCTTTTCCTCTCTATGTTGTCTTTA 57.510 33.333 0.00 0.00 0.00 1.85
1345 1373 7.993183 TGTTCTTTTCCTCTCTATGTTGTCTTT 59.007 33.333 0.00 0.00 0.00 2.52
1346 1374 7.509546 TGTTCTTTTCCTCTCTATGTTGTCTT 58.490 34.615 0.00 0.00 0.00 3.01
1347 1375 7.067496 TGTTCTTTTCCTCTCTATGTTGTCT 57.933 36.000 0.00 0.00 0.00 3.41
1348 1376 7.913674 ATGTTCTTTTCCTCTCTATGTTGTC 57.086 36.000 0.00 0.00 0.00 3.18
1349 1377 7.391833 GGAATGTTCTTTTCCTCTCTATGTTGT 59.608 37.037 0.00 0.00 39.67 3.32
1350 1378 7.391554 TGGAATGTTCTTTTCCTCTCTATGTTG 59.608 37.037 4.28 0.00 42.63 3.33
1351 1379 7.461749 TGGAATGTTCTTTTCCTCTCTATGTT 58.538 34.615 4.28 0.00 42.63 2.71
1352 1380 7.020827 TGGAATGTTCTTTTCCTCTCTATGT 57.979 36.000 4.28 0.00 42.63 2.29
1353 1381 7.334090 TCTGGAATGTTCTTTTCCTCTCTATG 58.666 38.462 4.28 0.00 42.63 2.23
1354 1382 7.502060 TCTGGAATGTTCTTTTCCTCTCTAT 57.498 36.000 4.28 0.00 42.63 1.98
1355 1383 6.935240 TCTGGAATGTTCTTTTCCTCTCTA 57.065 37.500 4.28 0.00 42.63 2.43
1356 1384 5.832539 TCTGGAATGTTCTTTTCCTCTCT 57.167 39.130 4.28 0.00 42.63 3.10
1357 1385 5.106357 GCTTCTGGAATGTTCTTTTCCTCTC 60.106 44.000 4.28 0.00 42.63 3.20
1358 1386 4.764308 GCTTCTGGAATGTTCTTTTCCTCT 59.236 41.667 4.28 0.00 42.63 3.69
1359 1387 4.764308 AGCTTCTGGAATGTTCTTTTCCTC 59.236 41.667 4.28 0.00 42.63 3.71
1360 1388 4.734266 AGCTTCTGGAATGTTCTTTTCCT 58.266 39.130 4.28 0.00 42.63 3.36
1361 1389 5.459536 AAGCTTCTGGAATGTTCTTTTCC 57.540 39.130 0.00 0.00 42.52 3.13
1362 1390 5.465051 GGAAGCTTCTGGAATGTTCTTTTC 58.535 41.667 25.05 0.00 0.00 2.29
1363 1391 4.281941 GGGAAGCTTCTGGAATGTTCTTTT 59.718 41.667 25.05 0.00 0.00 2.27
1364 1392 3.829026 GGGAAGCTTCTGGAATGTTCTTT 59.171 43.478 25.05 0.00 0.00 2.52
1365 1393 3.181429 TGGGAAGCTTCTGGAATGTTCTT 60.181 43.478 25.05 0.00 0.00 2.52
1366 1394 2.376518 TGGGAAGCTTCTGGAATGTTCT 59.623 45.455 25.05 0.00 0.00 3.01
1367 1395 2.795329 TGGGAAGCTTCTGGAATGTTC 58.205 47.619 25.05 5.78 0.00 3.18
1368 1396 2.978156 TGGGAAGCTTCTGGAATGTT 57.022 45.000 25.05 0.00 0.00 2.71
1369 1397 2.978156 TTGGGAAGCTTCTGGAATGT 57.022 45.000 25.05 0.00 0.00 2.71
1370 1398 3.306294 GGTTTTGGGAAGCTTCTGGAATG 60.306 47.826 25.05 0.00 0.00 2.67
1371 1399 2.899900 GGTTTTGGGAAGCTTCTGGAAT 59.100 45.455 25.05 0.00 0.00 3.01
1372 1400 2.316108 GGTTTTGGGAAGCTTCTGGAA 58.684 47.619 25.05 14.02 0.00 3.53
1373 1401 1.216678 TGGTTTTGGGAAGCTTCTGGA 59.783 47.619 25.05 8.97 0.00 3.86
1374 1402 1.615392 CTGGTTTTGGGAAGCTTCTGG 59.385 52.381 25.05 2.90 0.00 3.86
1375 1403 1.000171 GCTGGTTTTGGGAAGCTTCTG 60.000 52.381 25.05 3.51 32.82 3.02
1376 1404 1.332195 GCTGGTTTTGGGAAGCTTCT 58.668 50.000 25.05 0.00 32.82 2.85
1377 1405 0.318441 GGCTGGTTTTGGGAAGCTTC 59.682 55.000 18.54 18.54 35.93 3.86
1378 1406 0.105504 AGGCTGGTTTTGGGAAGCTT 60.106 50.000 0.00 0.00 35.93 3.74
1379 1407 0.777446 TAGGCTGGTTTTGGGAAGCT 59.223 50.000 0.00 0.00 35.93 3.74
1380 1408 1.177401 CTAGGCTGGTTTTGGGAAGC 58.823 55.000 0.00 0.00 34.86 3.86
1381 1409 2.879103 TCTAGGCTGGTTTTGGGAAG 57.121 50.000 0.00 0.00 0.00 3.46
1382 1410 2.817839 GCTTCTAGGCTGGTTTTGGGAA 60.818 50.000 0.00 0.00 0.00 3.97
1383 1411 1.271926 GCTTCTAGGCTGGTTTTGGGA 60.272 52.381 0.00 0.00 0.00 4.37
1384 1412 1.177401 GCTTCTAGGCTGGTTTTGGG 58.823 55.000 0.00 0.00 0.00 4.12
1385 1413 2.206576 AGCTTCTAGGCTGGTTTTGG 57.793 50.000 0.00 0.00 41.43 3.28
1386 1414 3.190118 CAGAAGCTTCTAGGCTGGTTTTG 59.810 47.826 28.02 8.92 42.24 2.44
1387 1415 3.416156 CAGAAGCTTCTAGGCTGGTTTT 58.584 45.455 28.02 0.00 42.24 2.43
1388 1416 2.290577 CCAGAAGCTTCTAGGCTGGTTT 60.291 50.000 28.02 0.00 42.24 3.27
1389 1417 1.280421 CCAGAAGCTTCTAGGCTGGTT 59.720 52.381 28.02 0.60 42.24 3.67
1390 1418 0.908198 CCAGAAGCTTCTAGGCTGGT 59.092 55.000 28.02 1.39 42.24 4.00
1391 1419 1.198713 TCCAGAAGCTTCTAGGCTGG 58.801 55.000 28.02 23.70 45.77 4.85
1392 1420 2.903798 CTTCCAGAAGCTTCTAGGCTG 58.096 52.381 28.02 16.09 42.24 4.85
1409 1437 6.018751 GGTTCTGTTTTGATTTTGGAAGCTTC 60.019 38.462 18.54 18.54 0.00 3.86
1410 1438 5.817296 GGTTCTGTTTTGATTTTGGAAGCTT 59.183 36.000 0.00 0.00 0.00 3.74
1411 1439 5.129320 AGGTTCTGTTTTGATTTTGGAAGCT 59.871 36.000 0.00 0.00 35.95 3.74
1412 1440 5.359756 AGGTTCTGTTTTGATTTTGGAAGC 58.640 37.500 0.00 0.00 0.00 3.86
1413 1441 7.010460 GTGAAGGTTCTGTTTTGATTTTGGAAG 59.990 37.037 0.00 0.00 0.00 3.46
1414 1442 6.816140 GTGAAGGTTCTGTTTTGATTTTGGAA 59.184 34.615 0.00 0.00 0.00 3.53
1415 1443 6.154363 AGTGAAGGTTCTGTTTTGATTTTGGA 59.846 34.615 0.00 0.00 0.00 3.53
1416 1444 6.340522 AGTGAAGGTTCTGTTTTGATTTTGG 58.659 36.000 0.00 0.00 0.00 3.28
1417 1445 6.197096 CGAGTGAAGGTTCTGTTTTGATTTTG 59.803 38.462 0.00 0.00 0.00 2.44
1418 1446 6.094881 TCGAGTGAAGGTTCTGTTTTGATTTT 59.905 34.615 0.00 0.00 0.00 1.82
1419 1447 5.588648 TCGAGTGAAGGTTCTGTTTTGATTT 59.411 36.000 0.00 0.00 0.00 2.17
1420 1448 5.123227 TCGAGTGAAGGTTCTGTTTTGATT 58.877 37.500 0.00 0.00 0.00 2.57
1421 1449 4.703897 TCGAGTGAAGGTTCTGTTTTGAT 58.296 39.130 0.00 0.00 0.00 2.57
1422 1450 4.131649 TCGAGTGAAGGTTCTGTTTTGA 57.868 40.909 0.00 0.00 0.00 2.69
1423 1451 4.875544 TTCGAGTGAAGGTTCTGTTTTG 57.124 40.909 0.00 0.00 0.00 2.44
1424 1452 7.584987 CATTATTCGAGTGAAGGTTCTGTTTT 58.415 34.615 0.00 0.00 37.57 2.43
1425 1453 6.348540 GCATTATTCGAGTGAAGGTTCTGTTT 60.349 38.462 0.00 0.00 37.57 2.83
1426 1454 5.122396 GCATTATTCGAGTGAAGGTTCTGTT 59.878 40.000 0.00 0.00 37.57 3.16
1427 1455 4.631813 GCATTATTCGAGTGAAGGTTCTGT 59.368 41.667 0.00 0.00 37.57 3.41
1428 1456 4.872691 AGCATTATTCGAGTGAAGGTTCTG 59.127 41.667 0.00 0.00 37.57 3.02
1429 1457 5.091261 AGCATTATTCGAGTGAAGGTTCT 57.909 39.130 0.00 0.00 37.57 3.01
1430 1458 6.903883 TTAGCATTATTCGAGTGAAGGTTC 57.096 37.500 0.00 0.00 37.57 3.62
1431 1459 7.201732 CCATTTAGCATTATTCGAGTGAAGGTT 60.202 37.037 0.00 0.00 37.57 3.50
1432 1460 6.260936 CCATTTAGCATTATTCGAGTGAAGGT 59.739 38.462 0.00 0.00 37.57 3.50
1433 1461 6.293626 CCCATTTAGCATTATTCGAGTGAAGG 60.294 42.308 0.00 0.00 37.57 3.46
1434 1462 6.260936 ACCCATTTAGCATTATTCGAGTGAAG 59.739 38.462 0.00 0.00 37.57 3.02
1435 1463 6.119536 ACCCATTTAGCATTATTCGAGTGAA 58.880 36.000 0.00 0.00 38.76 3.18
1436 1464 5.680619 ACCCATTTAGCATTATTCGAGTGA 58.319 37.500 0.00 0.00 0.00 3.41
1437 1465 5.760253 AGACCCATTTAGCATTATTCGAGTG 59.240 40.000 0.00 0.00 0.00 3.51
1438 1466 5.930135 AGACCCATTTAGCATTATTCGAGT 58.070 37.500 0.00 0.00 0.00 4.18
1439 1467 7.155328 ACTAGACCCATTTAGCATTATTCGAG 58.845 38.462 0.00 0.00 0.00 4.04
1440 1468 7.062749 ACTAGACCCATTTAGCATTATTCGA 57.937 36.000 0.00 0.00 0.00 3.71
1441 1469 6.929049 TGACTAGACCCATTTAGCATTATTCG 59.071 38.462 0.00 0.00 0.00 3.34
1442 1470 7.715249 TGTGACTAGACCCATTTAGCATTATTC 59.285 37.037 0.00 0.00 0.00 1.75
1443 1471 7.573710 TGTGACTAGACCCATTTAGCATTATT 58.426 34.615 0.00 0.00 0.00 1.40
1444 1472 7.136822 TGTGACTAGACCCATTTAGCATTAT 57.863 36.000 0.00 0.00 0.00 1.28
1448 1476 6.553953 TTATGTGACTAGACCCATTTAGCA 57.446 37.500 0.00 0.00 0.00 3.49
1459 1487 5.337554 CGTCGGTCAATTTATGTGACTAGA 58.662 41.667 0.00 2.80 44.02 2.43
1463 1491 2.350498 CCCGTCGGTCAATTTATGTGAC 59.650 50.000 11.06 0.00 43.87 3.67
1474 1502 2.135581 ACCAAGTTCCCGTCGGTCA 61.136 57.895 11.06 0.00 0.00 4.02
1485 1513 2.280524 TACGCAGCGCACCAAGTT 60.281 55.556 16.61 0.00 0.00 2.66
1487 1515 3.788766 GGTACGCAGCGCACCAAG 61.789 66.667 29.09 0.00 42.28 3.61
1588 1616 7.913297 TCAGATTAGAAAACAAAACCAAAGTCG 59.087 33.333 0.00 0.00 0.00 4.18
1639 1668 5.221322 GGAAAAGAATGCTGAAGGAAACTGT 60.221 40.000 0.00 0.00 42.68 3.55
1647 1676 8.302438 AGTGATAAAAGGAAAAGAATGCTGAAG 58.698 33.333 0.00 0.00 0.00 3.02
1657 1686 8.628882 ACGAAACAAAGTGATAAAAGGAAAAG 57.371 30.769 0.00 0.00 0.00 2.27
1812 1863 9.429109 AAAGAACCAAAATAGAAAAGGGAGTAA 57.571 29.630 0.00 0.00 0.00 2.24
1817 1868 8.956533 TCAAAAAGAACCAAAATAGAAAAGGG 57.043 30.769 0.00 0.00 0.00 3.95
1950 2001 9.549509 GCATACGTGATGAAAGTTATTTTGTAA 57.450 29.630 0.00 0.00 37.82 2.41
1952 2003 7.589395 TGCATACGTGATGAAAGTTATTTTGT 58.411 30.769 0.00 0.00 37.82 2.83
1956 2007 8.296713 AGTTTTGCATACGTGATGAAAGTTATT 58.703 29.630 0.00 0.00 34.34 1.40
1960 2011 5.689383 AGTTTTGCATACGTGATGAAAGT 57.311 34.783 0.00 0.00 34.34 2.66
1961 2012 6.636447 TGAAAGTTTTGCATACGTGATGAAAG 59.364 34.615 0.00 0.00 34.34 2.62
1970 2021 4.443725 TGCATGTTGAAAGTTTTGCATACG 59.556 37.500 7.63 0.00 35.36 3.06
1975 2026 8.612233 TTTTAAATGCATGTTGAAAGTTTTGC 57.388 26.923 0.00 2.85 0.00 3.68
1982 2033 8.484641 TGACAACTTTTAAATGCATGTTGAAA 57.515 26.923 24.13 16.35 38.36 2.69
2008 2059 5.908916 TGACGAACATTTGAAATACACGA 57.091 34.783 13.42 0.00 0.00 4.35
2131 2207 9.516314 AGAACCAAAAGAAAAGAACGAAAATAG 57.484 29.630 0.00 0.00 0.00 1.73
2132 2208 9.863845 AAGAACCAAAAGAAAAGAACGAAAATA 57.136 25.926 0.00 0.00 0.00 1.40
2138 2214 8.239681 AGAAAAAGAACCAAAAGAAAAGAACG 57.760 30.769 0.00 0.00 0.00 3.95


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.