Multiple sequence alignment - TraesCS4A01G108200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G108200 chr4A 100.000 4533 0 0 1 4533 125389969 125394501 0.000000e+00 8371.0
1 TraesCS4A01G108200 chr4A 100.000 2157 0 0 4809 6965 125394777 125396933 0.000000e+00 3984.0
2 TraesCS4A01G108200 chr2A 95.339 2832 95 19 1716 4533 657092202 657095010 0.000000e+00 4464.0
3 TraesCS4A01G108200 chr2A 93.351 1474 74 17 4809 6267 657095074 657096538 0.000000e+00 2158.0
4 TraesCS4A01G108200 chr2A 92.787 610 29 9 6360 6965 657096721 657097319 0.000000e+00 869.0
5 TraesCS4A01G108200 chr2A 91.223 376 18 6 1315 1680 657091832 657092202 1.350000e-136 497.0
6 TraesCS4A01G108200 chr2A 87.879 165 17 3 473 635 729850370 729850533 2.560000e-44 191.0
7 TraesCS4A01G108200 chr4B 94.859 1945 80 13 1714 3649 423057623 423055690 0.000000e+00 3020.0
8 TraesCS4A01G108200 chr4B 94.338 1572 52 18 4809 6371 423054512 423052969 0.000000e+00 2375.0
9 TraesCS4A01G108200 chr4B 97.246 690 16 2 3846 4533 423055263 423054575 0.000000e+00 1166.0
10 TraesCS4A01G108200 chr4B 94.545 605 20 9 6371 6965 423052926 423052325 0.000000e+00 922.0
11 TraesCS4A01G108200 chr4B 92.141 509 17 4 1180 1678 423058115 423057620 0.000000e+00 697.0
12 TraesCS4A01G108200 chr4B 97.071 239 5 1 3636 3872 423055502 423055264 1.090000e-107 401.0
13 TraesCS4A01G108200 chr4B 90.291 309 21 5 867 1172 423058394 423058092 5.060000e-106 396.0
14 TraesCS4A01G108200 chr4B 84.663 163 19 3 401 562 389470895 389471052 2.600000e-34 158.0
15 TraesCS4A01G108200 chr4B 84.127 63 6 3 1669 1731 362929864 362929806 2.710000e-04 58.4
16 TraesCS4A01G108200 chr4D 96.554 1480 33 10 1720 3192 341408143 341406675 0.000000e+00 2435.0
17 TraesCS4A01G108200 chr4D 92.732 1486 78 17 4809 6274 341405088 341403613 0.000000e+00 2121.0
18 TraesCS4A01G108200 chr4D 93.988 1364 57 12 3185 4533 341406505 341405152 0.000000e+00 2041.0
19 TraesCS4A01G108200 chr4D 91.694 602 28 12 6369 6965 341403437 341402853 0.000000e+00 815.0
20 TraesCS4A01G108200 chr4D 93.281 506 20 9 1180 1676 341409970 341409470 0.000000e+00 734.0
21 TraesCS4A01G108200 chr4D 92.082 341 25 2 1 340 341411961 341411622 4.890000e-131 479.0
22 TraesCS4A01G108200 chr4D 92.642 299 21 1 876 1173 341410245 341409947 4.990000e-116 429.0
23 TraesCS4A01G108200 chr4D 85.759 316 36 8 342 648 85992933 85992618 6.740000e-85 326.0
24 TraesCS4A01G108200 chr4D 85.366 82 8 3 649 728 341411628 341411549 1.610000e-11 82.4
25 TraesCS4A01G108200 chr4D 95.000 40 0 1 6322 6361 341403559 341403522 2.100000e-05 62.1
26 TraesCS4A01G108200 chr4D 96.875 32 1 0 279 310 341411588 341411557 4.000000e-03 54.7
27 TraesCS4A01G108200 chrUn 94.135 1364 55 12 3185 4533 365648887 365647534 0.000000e+00 2052.0
28 TraesCS4A01G108200 chrUn 97.269 476 13 0 4809 5284 365647470 365646995 0.000000e+00 808.0
29 TraesCS4A01G108200 chrUn 91.950 559 34 8 5714 6268 418950013 418950564 0.000000e+00 773.0
30 TraesCS4A01G108200 chrUn 93.110 508 19 9 1180 1676 335166488 335166990 0.000000e+00 730.0
31 TraesCS4A01G108200 chrUn 90.976 543 26 12 6360 6897 418950746 418951270 0.000000e+00 710.0
32 TraesCS4A01G108200 chrUn 92.067 416 23 6 3672 4077 477180223 477180638 1.680000e-160 577.0
33 TraesCS4A01G108200 chrUn 92.642 299 21 1 876 1173 335166213 335166511 4.990000e-116 429.0
34 TraesCS4A01G108200 chrUn 92.642 299 21 1 876 1173 475953381 475953083 4.990000e-116 429.0
35 TraesCS4A01G108200 chrUn 96.364 165 6 0 1180 1344 475953106 475952942 8.900000e-69 272.0
36 TraesCS4A01G108200 chrUn 91.489 47 1 3 1689 1735 267452893 267452850 2.100000e-05 62.1
37 TraesCS4A01G108200 chrUn 91.489 47 1 3 1689 1735 340256261 340256218 2.100000e-05 62.1
38 TraesCS4A01G108200 chrUn 100.000 33 0 0 6322 6354 418950626 418950658 2.100000e-05 62.1
39 TraesCS4A01G108200 chr7B 82.226 557 65 24 6094 6637 703109834 703109299 3.830000e-122 449.0
40 TraesCS4A01G108200 chr7B 86.689 293 30 7 343 627 501781995 501782286 4.050000e-82 316.0
41 TraesCS4A01G108200 chr7B 84.286 280 34 7 380 649 716044450 716044729 1.490000e-66 265.0
42 TraesCS4A01G108200 chr7B 85.659 258 27 7 343 590 78072690 78072433 5.360000e-66 263.0
43 TraesCS4A01G108200 chr7D 88.291 316 28 8 342 648 348128436 348128751 3.070000e-98 370.0
44 TraesCS4A01G108200 chr7D 79.856 556 61 28 6094 6637 568325510 568326026 6.640000e-95 359.0
45 TraesCS4A01G108200 chr7D 92.683 41 2 1 303 342 167359302 167359342 2.710000e-04 58.4
46 TraesCS4A01G108200 chr6A 80.214 561 50 36 6094 6638 135573117 135573632 1.430000e-96 364.0
47 TraesCS4A01G108200 chr6A 94.444 36 2 0 308 343 111532871 111532836 1.000000e-03 56.5
48 TraesCS4A01G108200 chr1A 79.004 562 56 37 6094 6638 555103182 555102666 1.870000e-85 327.0
49 TraesCS4A01G108200 chr1A 85.443 316 34 7 343 648 410450628 410450315 1.130000e-82 318.0
50 TraesCS4A01G108200 chr7A 78.712 559 61 33 6094 6638 86148527 86148013 3.130000e-83 320.0
51 TraesCS4A01G108200 chr6D 85.081 248 26 4 343 579 359007998 359008245 6.980000e-60 243.0
52 TraesCS4A01G108200 chr6D 90.000 60 4 2 1664 1722 93531067 93531125 7.490000e-10 76.8
53 TraesCS4A01G108200 chr6D 81.538 65 11 1 1690 1753 422327438 422327374 1.300000e-02 52.8
54 TraesCS4A01G108200 chr5B 81.672 311 35 10 343 648 669784216 669783923 9.030000e-59 239.0
55 TraesCS4A01G108200 chr5B 91.489 47 1 3 1689 1735 392087791 392087748 2.100000e-05 62.1
56 TraesCS4A01G108200 chr5B 91.489 47 1 3 1689 1735 392127828 392127785 2.100000e-05 62.1
57 TraesCS4A01G108200 chr2D 86.420 162 14 6 343 497 128373008 128373168 3.340000e-38 171.0
58 TraesCS4A01G108200 chr2D 81.437 167 27 3 2301 2466 453699448 453699611 4.380000e-27 134.0
59 TraesCS4A01G108200 chr2D 92.683 41 2 1 304 343 577139954 577139994 2.710000e-04 58.4
60 TraesCS4A01G108200 chr5D 97.619 42 1 0 1676 1717 86759463 86759504 9.690000e-09 73.1
61 TraesCS4A01G108200 chr5D 95.000 40 0 2 305 343 125781065 125781103 2.100000e-05 62.1
62 TraesCS4A01G108200 chr3B 91.667 48 1 3 1676 1721 266567660 266567614 5.830000e-06 63.9
63 TraesCS4A01G108200 chr2B 100.000 34 0 0 310 343 182863010 182863043 5.830000e-06 63.9
64 TraesCS4A01G108200 chr3D 94.872 39 2 0 306 344 443589840 443589802 2.100000e-05 62.1
65 TraesCS4A01G108200 chr3D 88.889 45 4 1 299 343 266641284 266641241 4.000000e-03 54.7
66 TraesCS4A01G108200 chr6B 87.273 55 4 3 1670 1721 552499485 552499539 7.540000e-05 60.2
67 TraesCS4A01G108200 chr3A 90.476 42 4 0 302 343 101859301 101859260 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G108200 chr4A 125389969 125396933 6964 False 6177.500000 8371 100.000000 1 6965 2 chr4A.!!$F1 6964
1 TraesCS4A01G108200 chr2A 657091832 657097319 5487 False 1997.000000 4464 93.175000 1315 6965 4 chr2A.!!$F2 5650
2 TraesCS4A01G108200 chr4B 423052325 423058394 6069 True 1282.428571 3020 94.355857 867 6965 7 chr4B.!!$R2 6098
3 TraesCS4A01G108200 chr4D 341402853 341411961 9108 True 925.320000 2435 93.021400 1 6965 10 chr4D.!!$R2 6964
4 TraesCS4A01G108200 chrUn 365646995 365648887 1892 True 1430.000000 2052 95.702000 3185 5284 2 chrUn.!!$R3 2099
5 TraesCS4A01G108200 chrUn 335166213 335166990 777 False 579.500000 730 92.876000 876 1676 2 chrUn.!!$F2 800
6 TraesCS4A01G108200 chrUn 418950013 418951270 1257 False 515.033333 773 94.308667 5714 6897 3 chrUn.!!$F3 1183
7 TraesCS4A01G108200 chr7B 703109299 703109834 535 True 449.000000 449 82.226000 6094 6637 1 chr7B.!!$R2 543
8 TraesCS4A01G108200 chr7D 568325510 568326026 516 False 359.000000 359 79.856000 6094 6637 1 chr7D.!!$F3 543
9 TraesCS4A01G108200 chr6A 135573117 135573632 515 False 364.000000 364 80.214000 6094 6638 1 chr6A.!!$F1 544
10 TraesCS4A01G108200 chr1A 555102666 555103182 516 True 327.000000 327 79.004000 6094 6638 1 chr1A.!!$R2 544
11 TraesCS4A01G108200 chr7A 86148013 86148527 514 True 320.000000 320 78.712000 6094 6638 1 chr7A.!!$R1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
39 40 0.036010 AGTTCCTTGGGATGCTGTCG 60.036 55.000 0.00 0.00 0.00 4.35 F
199 200 0.310854 GTTTTCACAGTCCGCCCAAG 59.689 55.000 0.00 0.00 0.00 3.61 F
1157 2354 0.032217 CTTCCTCTCCCCAGCTCTCT 60.032 60.000 0.00 0.00 0.00 3.10 F
1161 2358 0.032217 CTCTCCCCAGCTCTCTTCCT 60.032 60.000 0.00 0.00 0.00 3.36 F
1162 2359 0.415429 TCTCCCCAGCTCTCTTCCTT 59.585 55.000 0.00 0.00 0.00 3.36 F
2374 4920 0.521735 GTCGCCCTTAACAAGCCTTG 59.478 55.000 2.11 2.11 0.00 3.61 F
3687 6622 1.421485 GCAGACATGTAGCGCACAC 59.579 57.895 11.47 7.82 40.86 3.82 F
5362 8352 1.002868 GATGTGCAGCAGGTGACCT 60.003 57.895 0.00 0.00 0.00 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1140 2337 0.032615 GAAGAGAGCTGGGGAGAGGA 60.033 60.000 0.00 0.0 0.00 3.71 R
1699 2917 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.0 0.00 3.28 R
3150 5705 0.033228 TTGGTTTGCAAGAATGGCCG 59.967 50.000 0.00 0.0 29.78 6.13 R
3238 5972 0.539051 CCTCTGCAACTCCAGGGTAG 59.461 60.000 0.00 0.0 31.19 3.18 R
3518 6252 3.540314 AAACAAATGCAGCCAACTTGA 57.460 38.095 0.00 0.0 0.00 3.02 R
3841 6778 0.318441 CGCTTCTGGAACTGGAGACA 59.682 55.000 0.00 0.0 34.53 3.41 R
5653 8655 0.746204 TGCACAGTTCGTTCTGCCAA 60.746 50.000 8.87 0.0 38.84 4.52 R
6254 9261 1.075542 ACACGAACACACACACACAG 58.924 50.000 0.00 0.0 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.018050 ACTTCATAAGTTCCTTGGGATGCT 60.018 41.667 0.00 0.00 39.04 3.79
39 40 0.036010 AGTTCCTTGGGATGCTGTCG 60.036 55.000 0.00 0.00 0.00 4.35
46 47 0.396435 TGGGATGCTGTCGAAGTGTT 59.604 50.000 0.00 0.00 0.00 3.32
59 60 8.391106 GCTGTCGAAGTGTTAAAATGAGATTAT 58.609 33.333 0.00 0.00 0.00 1.28
81 82 5.273674 TGGAGACATCATCATCAGAGAAC 57.726 43.478 0.00 0.00 33.40 3.01
83 84 5.068855 TGGAGACATCATCATCAGAGAACTC 59.931 44.000 0.00 0.00 33.40 3.01
98 99 6.658974 AGAGAACTCTGTGCTTCATCAGCC 62.659 50.000 3.39 0.00 42.64 4.85
131 132 4.755629 CGAGACTTAGGTCGATGATCCTTA 59.244 45.833 0.00 0.00 46.29 2.69
178 179 6.327365 TCATCTTTGTAGCAATAGGAGATGGA 59.673 38.462 15.40 5.89 39.44 3.41
180 181 4.322080 TTGTAGCAATAGGAGATGGACG 57.678 45.455 0.00 0.00 0.00 4.79
195 196 1.568025 GACGTTTTCACAGTCCGCC 59.432 57.895 0.00 0.00 0.00 6.13
199 200 0.310854 GTTTTCACAGTCCGCCCAAG 59.689 55.000 0.00 0.00 0.00 3.61
237 238 2.167693 AGTTGATCGAATACCGCCTTCA 59.832 45.455 0.00 0.00 38.37 3.02
265 266 5.186797 TCAAGGGGCCAATAAATTGTAACAG 59.813 40.000 4.39 0.00 36.06 3.16
301 302 6.032775 CGTGTGAACAATCAGATTTTGTATGC 59.967 38.462 0.00 0.00 36.32 3.14
306 307 7.760794 TGAACAATCAGATTTTGTATGCCATTC 59.239 33.333 0.00 0.00 36.32 2.67
340 341 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
341 342 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
342 343 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
343 344 4.406003 CCCTCCGTCCCATAATATAAGAGG 59.594 50.000 0.00 0.00 38.47 3.69
344 345 5.269991 CCTCCGTCCCATAATATAAGAGGA 58.730 45.833 0.00 0.00 40.69 3.71
345 346 5.361285 CCTCCGTCCCATAATATAAGAGGAG 59.639 48.000 0.00 0.00 40.69 3.69
346 347 4.710375 TCCGTCCCATAATATAAGAGGAGC 59.290 45.833 0.00 0.00 0.00 4.70
347 348 4.141914 CCGTCCCATAATATAAGAGGAGCC 60.142 50.000 0.00 0.00 0.00 4.70
348 349 4.466370 CGTCCCATAATATAAGAGGAGCCA 59.534 45.833 0.00 0.00 0.00 4.75
349 350 5.394663 CGTCCCATAATATAAGAGGAGCCAG 60.395 48.000 0.00 0.00 0.00 4.85
350 351 5.721960 GTCCCATAATATAAGAGGAGCCAGA 59.278 44.000 0.00 0.00 0.00 3.86
351 352 6.385467 GTCCCATAATATAAGAGGAGCCAGAT 59.615 42.308 0.00 0.00 0.00 2.90
352 353 6.613271 TCCCATAATATAAGAGGAGCCAGATC 59.387 42.308 0.00 0.00 0.00 2.75
353 354 6.183361 CCCATAATATAAGAGGAGCCAGATCC 60.183 46.154 0.00 0.00 39.89 3.36
362 363 3.399440 GGAGCCAGATCCTCTAACATG 57.601 52.381 0.00 0.00 36.35 3.21
363 364 2.549778 GGAGCCAGATCCTCTAACATGC 60.550 54.545 0.00 0.00 36.35 4.06
364 365 2.368221 GAGCCAGATCCTCTAACATGCT 59.632 50.000 0.00 0.00 0.00 3.79
365 366 2.368221 AGCCAGATCCTCTAACATGCTC 59.632 50.000 0.00 0.00 0.00 4.26
366 367 2.103771 GCCAGATCCTCTAACATGCTCA 59.896 50.000 0.00 0.00 0.00 4.26
367 368 3.432749 GCCAGATCCTCTAACATGCTCAA 60.433 47.826 0.00 0.00 0.00 3.02
368 369 4.378774 CCAGATCCTCTAACATGCTCAAG 58.621 47.826 0.00 0.00 0.00 3.02
369 370 4.378774 CAGATCCTCTAACATGCTCAAGG 58.621 47.826 0.00 0.00 0.00 3.61
370 371 4.100653 CAGATCCTCTAACATGCTCAAGGA 59.899 45.833 9.23 9.23 37.33 3.36
371 372 4.718774 AGATCCTCTAACATGCTCAAGGAA 59.281 41.667 10.47 0.00 36.56 3.36
372 373 4.908601 TCCTCTAACATGCTCAAGGAAA 57.091 40.909 5.32 0.00 30.19 3.13
373 374 4.836825 TCCTCTAACATGCTCAAGGAAAG 58.163 43.478 5.32 0.00 30.19 2.62
374 375 4.287067 TCCTCTAACATGCTCAAGGAAAGT 59.713 41.667 5.32 0.00 30.19 2.66
375 376 4.633565 CCTCTAACATGCTCAAGGAAAGTC 59.366 45.833 0.00 0.00 0.00 3.01
376 377 5.227569 TCTAACATGCTCAAGGAAAGTCA 57.772 39.130 0.00 0.00 0.00 3.41
377 378 4.997395 TCTAACATGCTCAAGGAAAGTCAC 59.003 41.667 0.00 0.00 0.00 3.67
378 379 3.498774 ACATGCTCAAGGAAAGTCACT 57.501 42.857 0.00 0.00 0.00 3.41
379 380 3.144506 ACATGCTCAAGGAAAGTCACTG 58.855 45.455 0.00 0.00 0.00 3.66
380 381 3.181451 ACATGCTCAAGGAAAGTCACTGA 60.181 43.478 0.00 0.00 0.00 3.41
381 382 3.117491 TGCTCAAGGAAAGTCACTGAG 57.883 47.619 0.00 0.00 0.00 3.35
382 383 1.803555 GCTCAAGGAAAGTCACTGAGC 59.196 52.381 6.61 6.61 40.05 4.26
383 384 2.549778 GCTCAAGGAAAGTCACTGAGCT 60.550 50.000 13.63 0.00 42.56 4.09
384 385 3.306364 GCTCAAGGAAAGTCACTGAGCTA 60.306 47.826 13.63 0.00 42.56 3.32
385 386 4.493547 CTCAAGGAAAGTCACTGAGCTAG 58.506 47.826 0.00 0.00 0.00 3.42
386 387 4.152647 TCAAGGAAAGTCACTGAGCTAGA 58.847 43.478 0.00 0.00 0.00 2.43
387 388 4.219507 TCAAGGAAAGTCACTGAGCTAGAG 59.780 45.833 0.00 0.00 0.00 2.43
388 389 3.773560 AGGAAAGTCACTGAGCTAGAGT 58.226 45.455 0.00 0.00 0.00 3.24
389 390 3.509575 AGGAAAGTCACTGAGCTAGAGTG 59.490 47.826 16.16 16.16 41.96 3.51
390 391 3.367910 GGAAAGTCACTGAGCTAGAGTGG 60.368 52.174 20.16 6.89 41.11 4.00
391 392 2.595750 AGTCACTGAGCTAGAGTGGT 57.404 50.000 20.16 9.34 41.11 4.16
392 393 2.166829 AGTCACTGAGCTAGAGTGGTG 58.833 52.381 20.16 8.88 41.11 4.17
393 394 1.889829 GTCACTGAGCTAGAGTGGTGT 59.110 52.381 20.16 0.00 41.11 4.16
394 395 2.297597 GTCACTGAGCTAGAGTGGTGTT 59.702 50.000 20.16 0.00 41.11 3.32
395 396 2.965831 TCACTGAGCTAGAGTGGTGTTT 59.034 45.455 20.16 0.00 41.11 2.83
396 397 3.062763 CACTGAGCTAGAGTGGTGTTTG 58.937 50.000 14.94 0.00 37.72 2.93
397 398 2.700897 ACTGAGCTAGAGTGGTGTTTGT 59.299 45.455 0.00 0.00 0.00 2.83
398 399 3.062763 CTGAGCTAGAGTGGTGTTTGTG 58.937 50.000 0.00 0.00 0.00 3.33
399 400 2.434336 TGAGCTAGAGTGGTGTTTGTGT 59.566 45.455 0.00 0.00 0.00 3.72
400 401 3.639561 TGAGCTAGAGTGGTGTTTGTGTA 59.360 43.478 0.00 0.00 0.00 2.90
401 402 4.100344 TGAGCTAGAGTGGTGTTTGTGTAA 59.900 41.667 0.00 0.00 0.00 2.41
402 403 5.031066 AGCTAGAGTGGTGTTTGTGTAAA 57.969 39.130 0.00 0.00 0.00 2.01
403 404 5.433526 AGCTAGAGTGGTGTTTGTGTAAAA 58.566 37.500 0.00 0.00 0.00 1.52
404 405 5.883673 AGCTAGAGTGGTGTTTGTGTAAAAA 59.116 36.000 0.00 0.00 0.00 1.94
423 424 5.388599 AAAAAGAGAAGGAAAGTCAGGGA 57.611 39.130 0.00 0.00 0.00 4.20
424 425 4.632327 AAAGAGAAGGAAAGTCAGGGAG 57.368 45.455 0.00 0.00 0.00 4.30
425 426 1.905894 AGAGAAGGAAAGTCAGGGAGC 59.094 52.381 0.00 0.00 0.00 4.70
426 427 1.905894 GAGAAGGAAAGTCAGGGAGCT 59.094 52.381 0.00 0.00 0.00 4.09
427 428 2.304470 GAGAAGGAAAGTCAGGGAGCTT 59.696 50.000 0.00 0.00 0.00 3.74
428 429 3.515901 GAGAAGGAAAGTCAGGGAGCTTA 59.484 47.826 0.00 0.00 0.00 3.09
429 430 4.107820 AGAAGGAAAGTCAGGGAGCTTAT 58.892 43.478 0.00 0.00 0.00 1.73
430 431 3.922171 AGGAAAGTCAGGGAGCTTATG 57.078 47.619 0.00 0.00 0.00 1.90
431 432 3.454858 AGGAAAGTCAGGGAGCTTATGA 58.545 45.455 0.00 0.00 0.00 2.15
432 433 3.846588 AGGAAAGTCAGGGAGCTTATGAA 59.153 43.478 0.00 0.00 0.00 2.57
433 434 4.289672 AGGAAAGTCAGGGAGCTTATGAAA 59.710 41.667 0.00 0.00 0.00 2.69
434 435 5.044550 AGGAAAGTCAGGGAGCTTATGAAAT 60.045 40.000 0.00 0.00 0.00 2.17
435 436 5.654209 GGAAAGTCAGGGAGCTTATGAAATT 59.346 40.000 0.00 0.00 0.00 1.82
436 437 6.405176 GGAAAGTCAGGGAGCTTATGAAATTG 60.405 42.308 0.00 0.00 0.00 2.32
437 438 5.441718 AGTCAGGGAGCTTATGAAATTGA 57.558 39.130 0.00 0.00 0.00 2.57
438 439 5.819991 AGTCAGGGAGCTTATGAAATTGAA 58.180 37.500 0.00 0.00 0.00 2.69
439 440 6.248433 AGTCAGGGAGCTTATGAAATTGAAA 58.752 36.000 0.00 0.00 0.00 2.69
440 441 6.894103 AGTCAGGGAGCTTATGAAATTGAAAT 59.106 34.615 0.00 0.00 0.00 2.17
441 442 8.055181 AGTCAGGGAGCTTATGAAATTGAAATA 58.945 33.333 0.00 0.00 0.00 1.40
442 443 8.854117 GTCAGGGAGCTTATGAAATTGAAATAT 58.146 33.333 0.00 0.00 0.00 1.28
443 444 9.425248 TCAGGGAGCTTATGAAATTGAAATATT 57.575 29.630 0.00 0.00 0.00 1.28
498 499 9.665264 ATTGAAACGAGTCTTCTAAAATTGAAC 57.335 29.630 0.00 0.00 0.00 3.18
499 500 8.433421 TGAAACGAGTCTTCTAAAATTGAACT 57.567 30.769 0.00 0.00 0.00 3.01
500 501 8.889717 TGAAACGAGTCTTCTAAAATTGAACTT 58.110 29.630 0.00 0.00 0.00 2.66
501 502 9.159470 GAAACGAGTCTTCTAAAATTGAACTTG 57.841 33.333 0.00 0.00 0.00 3.16
502 503 7.190920 ACGAGTCTTCTAAAATTGAACTTGG 57.809 36.000 0.00 0.00 0.00 3.61
503 504 6.990349 ACGAGTCTTCTAAAATTGAACTTGGA 59.010 34.615 0.00 0.00 0.00 3.53
504 505 7.497909 ACGAGTCTTCTAAAATTGAACTTGGAA 59.502 33.333 0.00 0.00 0.00 3.53
505 506 8.507249 CGAGTCTTCTAAAATTGAACTTGGAAT 58.493 33.333 0.00 0.00 0.00 3.01
506 507 9.617975 GAGTCTTCTAAAATTGAACTTGGAATG 57.382 33.333 0.00 0.00 0.00 2.67
507 508 9.136323 AGTCTTCTAAAATTGAACTTGGAATGT 57.864 29.630 0.00 0.00 0.00 2.71
508 509 9.399403 GTCTTCTAAAATTGAACTTGGAATGTC 57.601 33.333 0.00 0.00 0.00 3.06
509 510 9.130661 TCTTCTAAAATTGAACTTGGAATGTCA 57.869 29.630 0.00 0.00 0.00 3.58
510 511 9.185192 CTTCTAAAATTGAACTTGGAATGTCAC 57.815 33.333 0.00 0.00 0.00 3.67
511 512 8.231692 TCTAAAATTGAACTTGGAATGTCACA 57.768 30.769 0.00 0.00 0.00 3.58
512 513 8.690884 TCTAAAATTGAACTTGGAATGTCACAA 58.309 29.630 0.00 0.00 0.00 3.33
513 514 9.311916 CTAAAATTGAACTTGGAATGTCACAAA 57.688 29.630 0.00 0.00 0.00 2.83
514 515 8.735692 AAAATTGAACTTGGAATGTCACAAAT 57.264 26.923 0.00 0.00 0.00 2.32
515 516 8.735692 AAATTGAACTTGGAATGTCACAAATT 57.264 26.923 0.00 0.00 0.00 1.82
516 517 7.718272 ATTGAACTTGGAATGTCACAAATTG 57.282 32.000 0.00 0.00 0.00 2.32
517 518 6.462552 TGAACTTGGAATGTCACAAATTGA 57.537 33.333 0.00 0.00 0.00 2.57
518 519 6.871844 TGAACTTGGAATGTCACAAATTGAA 58.128 32.000 0.00 0.00 35.39 2.69
519 520 7.326454 TGAACTTGGAATGTCACAAATTGAAA 58.674 30.769 0.00 0.00 35.39 2.69
520 521 7.986320 TGAACTTGGAATGTCACAAATTGAAAT 59.014 29.630 0.00 0.00 35.39 2.17
521 522 8.735692 AACTTGGAATGTCACAAATTGAAATT 57.264 26.923 0.00 0.00 43.89 1.82
522 523 8.145316 ACTTGGAATGTCACAAATTGAAATTG 57.855 30.769 0.00 0.00 41.61 2.32
523 524 7.986320 ACTTGGAATGTCACAAATTGAAATTGA 59.014 29.630 0.00 0.00 41.61 2.57
524 525 8.905660 TTGGAATGTCACAAATTGAAATTGAT 57.094 26.923 0.00 0.00 41.61 2.57
525 526 8.537049 TGGAATGTCACAAATTGAAATTGATC 57.463 30.769 0.00 0.00 41.61 2.92
526 527 8.369424 TGGAATGTCACAAATTGAAATTGATCT 58.631 29.630 0.00 0.00 41.61 2.75
527 528 9.211485 GGAATGTCACAAATTGAAATTGATCTT 57.789 29.630 0.00 0.00 41.61 2.40
545 546 8.816640 TTGATCTTTTAGAAATTGAAACCTGC 57.183 30.769 0.00 0.00 0.00 4.85
546 547 7.378181 TGATCTTTTAGAAATTGAAACCTGCC 58.622 34.615 0.00 0.00 0.00 4.85
547 548 6.976934 TCTTTTAGAAATTGAAACCTGCCT 57.023 33.333 0.00 0.00 0.00 4.75
548 549 7.360113 TCTTTTAGAAATTGAAACCTGCCTT 57.640 32.000 0.00 0.00 0.00 4.35
549 550 7.791029 TCTTTTAGAAATTGAAACCTGCCTTT 58.209 30.769 0.00 0.00 0.00 3.11
550 551 8.264347 TCTTTTAGAAATTGAAACCTGCCTTTT 58.736 29.630 0.00 0.00 0.00 2.27
551 552 7.784633 TTTAGAAATTGAAACCTGCCTTTTG 57.215 32.000 0.00 0.00 0.00 2.44
552 553 5.612725 AGAAATTGAAACCTGCCTTTTGA 57.387 34.783 0.00 0.00 0.00 2.69
553 554 5.988287 AGAAATTGAAACCTGCCTTTTGAA 58.012 33.333 0.00 0.00 0.00 2.69
554 555 6.413892 AGAAATTGAAACCTGCCTTTTGAAA 58.586 32.000 0.00 0.00 0.00 2.69
555 556 6.883756 AGAAATTGAAACCTGCCTTTTGAAAA 59.116 30.769 0.00 0.00 0.00 2.29
556 557 7.557358 AGAAATTGAAACCTGCCTTTTGAAAAT 59.443 29.630 0.00 0.00 0.00 1.82
557 558 7.643569 AATTGAAACCTGCCTTTTGAAAATT 57.356 28.000 0.00 0.00 0.00 1.82
558 559 6.434018 TTGAAACCTGCCTTTTGAAAATTG 57.566 33.333 0.00 0.00 0.00 2.32
559 560 5.738909 TGAAACCTGCCTTTTGAAAATTGA 58.261 33.333 0.00 0.00 0.00 2.57
560 561 6.176183 TGAAACCTGCCTTTTGAAAATTGAA 58.824 32.000 0.00 0.00 0.00 2.69
561 562 6.656693 TGAAACCTGCCTTTTGAAAATTGAAA 59.343 30.769 0.00 0.00 0.00 2.69
562 563 7.338957 TGAAACCTGCCTTTTGAAAATTGAAAT 59.661 29.630 0.00 0.00 0.00 2.17
563 564 8.744568 AAACCTGCCTTTTGAAAATTGAAATA 57.255 26.923 0.00 0.00 0.00 1.40
564 565 8.744568 AACCTGCCTTTTGAAAATTGAAATAA 57.255 26.923 0.00 0.00 0.00 1.40
565 566 8.382030 ACCTGCCTTTTGAAAATTGAAATAAG 57.618 30.769 0.00 0.00 0.00 1.73
566 567 7.041167 ACCTGCCTTTTGAAAATTGAAATAAGC 60.041 33.333 0.00 0.00 0.00 3.09
567 568 7.041235 CCTGCCTTTTGAAAATTGAAATAAGCA 60.041 33.333 0.00 0.00 0.00 3.91
568 569 7.638134 TGCCTTTTGAAAATTGAAATAAGCAC 58.362 30.769 0.00 0.00 0.00 4.40
569 570 7.498570 TGCCTTTTGAAAATTGAAATAAGCACT 59.501 29.630 0.00 0.00 0.00 4.40
570 571 7.799914 GCCTTTTGAAAATTGAAATAAGCACTG 59.200 33.333 0.00 0.00 0.00 3.66
571 572 8.829612 CCTTTTGAAAATTGAAATAAGCACTGT 58.170 29.630 0.00 0.00 0.00 3.55
574 575 8.939201 TTGAAAATTGAAATAAGCACTGTTCA 57.061 26.923 0.00 0.00 0.00 3.18
575 576 9.545105 TTGAAAATTGAAATAAGCACTGTTCAT 57.455 25.926 0.00 0.00 30.51 2.57
576 577 8.980610 TGAAAATTGAAATAAGCACTGTTCATG 58.019 29.630 0.00 0.00 30.51 3.07
577 578 7.894376 AAATTGAAATAAGCACTGTTCATGG 57.106 32.000 0.00 0.00 30.51 3.66
578 579 5.389859 TTGAAATAAGCACTGTTCATGGG 57.610 39.130 0.00 0.00 30.51 4.00
579 580 3.193267 TGAAATAAGCACTGTTCATGGGC 59.807 43.478 0.00 0.00 0.00 5.36
580 581 2.814805 ATAAGCACTGTTCATGGGCT 57.185 45.000 0.00 0.00 36.13 5.19
581 582 3.931907 ATAAGCACTGTTCATGGGCTA 57.068 42.857 0.00 0.00 33.80 3.93
582 583 2.584835 AAGCACTGTTCATGGGCTAA 57.415 45.000 0.00 0.00 33.80 3.09
583 584 2.119801 AGCACTGTTCATGGGCTAAG 57.880 50.000 0.00 0.00 32.09 2.18
584 585 1.630369 AGCACTGTTCATGGGCTAAGA 59.370 47.619 0.00 0.00 32.09 2.10
585 586 2.012673 GCACTGTTCATGGGCTAAGAG 58.987 52.381 0.00 0.00 0.00 2.85
586 587 2.616510 GCACTGTTCATGGGCTAAGAGT 60.617 50.000 0.00 0.00 30.00 3.24
587 588 3.005554 CACTGTTCATGGGCTAAGAGTG 58.994 50.000 7.48 7.48 39.61 3.51
588 589 2.906389 ACTGTTCATGGGCTAAGAGTGA 59.094 45.455 0.00 0.00 28.97 3.41
589 590 3.327757 ACTGTTCATGGGCTAAGAGTGAA 59.672 43.478 0.00 0.00 28.97 3.18
590 591 4.202461 ACTGTTCATGGGCTAAGAGTGAAA 60.202 41.667 0.00 0.00 31.38 2.69
591 592 4.326826 TGTTCATGGGCTAAGAGTGAAAG 58.673 43.478 0.00 0.00 31.38 2.62
592 593 4.041567 TGTTCATGGGCTAAGAGTGAAAGA 59.958 41.667 0.00 0.00 31.38 2.52
593 594 4.908601 TCATGGGCTAAGAGTGAAAGAA 57.091 40.909 0.00 0.00 0.00 2.52
594 595 5.241403 TCATGGGCTAAGAGTGAAAGAAA 57.759 39.130 0.00 0.00 0.00 2.52
595 596 5.248640 TCATGGGCTAAGAGTGAAAGAAAG 58.751 41.667 0.00 0.00 0.00 2.62
596 597 4.706842 TGGGCTAAGAGTGAAAGAAAGT 57.293 40.909 0.00 0.00 0.00 2.66
597 598 5.048846 TGGGCTAAGAGTGAAAGAAAGTT 57.951 39.130 0.00 0.00 0.00 2.66
598 599 6.182507 TGGGCTAAGAGTGAAAGAAAGTTA 57.817 37.500 0.00 0.00 0.00 2.24
599 600 6.231211 TGGGCTAAGAGTGAAAGAAAGTTAG 58.769 40.000 0.00 0.00 0.00 2.34
600 601 5.644206 GGGCTAAGAGTGAAAGAAAGTTAGG 59.356 44.000 0.00 0.00 0.00 2.69
601 602 6.231951 GGCTAAGAGTGAAAGAAAGTTAGGT 58.768 40.000 0.00 0.00 0.00 3.08
602 603 6.711194 GGCTAAGAGTGAAAGAAAGTTAGGTT 59.289 38.462 0.00 0.00 0.00 3.50
603 604 7.876582 GGCTAAGAGTGAAAGAAAGTTAGGTTA 59.123 37.037 0.00 0.00 0.00 2.85
604 605 8.710551 GCTAAGAGTGAAAGAAAGTTAGGTTAC 58.289 37.037 0.00 0.00 0.00 2.50
605 606 9.984190 CTAAGAGTGAAAGAAAGTTAGGTTACT 57.016 33.333 0.00 0.00 0.00 2.24
606 607 8.664211 AAGAGTGAAAGAAAGTTAGGTTACTG 57.336 34.615 0.00 0.00 0.00 2.74
607 608 7.793036 AGAGTGAAAGAAAGTTAGGTTACTGT 58.207 34.615 0.00 0.00 0.00 3.55
608 609 8.921205 AGAGTGAAAGAAAGTTAGGTTACTGTA 58.079 33.333 0.00 0.00 0.00 2.74
609 610 9.194271 GAGTGAAAGAAAGTTAGGTTACTGTAG 57.806 37.037 0.00 0.00 0.00 2.74
610 611 7.656542 AGTGAAAGAAAGTTAGGTTACTGTAGC 59.343 37.037 0.00 0.00 0.00 3.58
611 612 7.656542 GTGAAAGAAAGTTAGGTTACTGTAGCT 59.343 37.037 1.71 0.00 0.00 3.32
612 613 8.208903 TGAAAGAAAGTTAGGTTACTGTAGCTT 58.791 33.333 0.00 0.00 0.00 3.74
613 614 9.702494 GAAAGAAAGTTAGGTTACTGTAGCTTA 57.298 33.333 0.00 0.00 0.00 3.09
614 615 9.486497 AAAGAAAGTTAGGTTACTGTAGCTTAC 57.514 33.333 0.00 1.06 0.00 2.34
615 616 7.609960 AGAAAGTTAGGTTACTGTAGCTTACC 58.390 38.462 0.00 0.41 0.00 2.85
616 617 7.454066 AGAAAGTTAGGTTACTGTAGCTTACCT 59.546 37.037 12.26 12.26 41.80 3.08
617 618 6.527057 AGTTAGGTTACTGTAGCTTACCTG 57.473 41.667 15.81 0.00 39.46 4.00
618 619 6.251471 AGTTAGGTTACTGTAGCTTACCTGA 58.749 40.000 15.81 7.67 39.46 3.86
619 620 6.723052 AGTTAGGTTACTGTAGCTTACCTGAA 59.277 38.462 15.81 6.67 39.46 3.02
620 621 7.399478 AGTTAGGTTACTGTAGCTTACCTGAAT 59.601 37.037 15.81 7.10 39.46 2.57
621 622 6.622427 AGGTTACTGTAGCTTACCTGAATT 57.378 37.500 7.88 0.00 37.80 2.17
622 623 6.641474 AGGTTACTGTAGCTTACCTGAATTC 58.359 40.000 7.88 0.00 37.80 2.17
623 624 5.816258 GGTTACTGTAGCTTACCTGAATTCC 59.184 44.000 2.27 0.00 0.00 3.01
624 625 4.489306 ACTGTAGCTTACCTGAATTCCC 57.511 45.455 2.27 0.00 0.00 3.97
625 626 4.104831 ACTGTAGCTTACCTGAATTCCCT 58.895 43.478 2.27 0.00 0.00 4.20
626 627 4.536489 ACTGTAGCTTACCTGAATTCCCTT 59.464 41.667 2.27 0.00 0.00 3.95
627 628 5.014228 ACTGTAGCTTACCTGAATTCCCTTT 59.986 40.000 2.27 0.00 0.00 3.11
628 629 5.253330 TGTAGCTTACCTGAATTCCCTTTG 58.747 41.667 2.27 0.00 0.00 2.77
629 630 4.657814 AGCTTACCTGAATTCCCTTTGA 57.342 40.909 2.27 0.00 0.00 2.69
630 631 4.998051 AGCTTACCTGAATTCCCTTTGAA 58.002 39.130 2.27 0.00 37.38 2.69
631 632 5.583932 AGCTTACCTGAATTCCCTTTGAAT 58.416 37.500 2.27 0.00 45.75 2.57
632 633 5.420104 AGCTTACCTGAATTCCCTTTGAATG 59.580 40.000 2.27 0.00 42.97 2.67
633 634 5.185828 GCTTACCTGAATTCCCTTTGAATGT 59.814 40.000 2.27 0.00 42.97 2.71
634 635 6.295292 GCTTACCTGAATTCCCTTTGAATGTT 60.295 38.462 2.27 0.00 42.97 2.71
635 636 5.728637 ACCTGAATTCCCTTTGAATGTTC 57.271 39.130 2.27 0.00 42.97 3.18
636 637 4.218417 ACCTGAATTCCCTTTGAATGTTCG 59.782 41.667 2.27 0.00 42.97 3.95
637 638 4.380867 CCTGAATTCCCTTTGAATGTTCGG 60.381 45.833 2.27 0.00 42.97 4.30
638 639 4.402829 TGAATTCCCTTTGAATGTTCGGA 58.597 39.130 2.27 0.00 42.97 4.55
639 640 5.016173 TGAATTCCCTTTGAATGTTCGGAT 58.984 37.500 2.27 0.00 42.97 4.18
640 641 5.125417 TGAATTCCCTTTGAATGTTCGGATC 59.875 40.000 2.27 0.00 42.97 3.36
641 642 2.999331 TCCCTTTGAATGTTCGGATCC 58.001 47.619 0.00 0.00 0.00 3.36
642 643 2.307392 TCCCTTTGAATGTTCGGATCCA 59.693 45.455 13.41 0.00 0.00 3.41
643 644 2.684881 CCCTTTGAATGTTCGGATCCAG 59.315 50.000 13.41 4.86 0.00 3.86
644 645 2.098117 CCTTTGAATGTTCGGATCCAGC 59.902 50.000 13.41 1.23 0.00 4.85
645 646 2.787473 TTGAATGTTCGGATCCAGCT 57.213 45.000 13.41 0.00 0.00 4.24
646 647 2.315925 TGAATGTTCGGATCCAGCTC 57.684 50.000 13.41 0.00 0.00 4.09
647 648 1.134401 TGAATGTTCGGATCCAGCTCC 60.134 52.381 13.41 0.00 0.00 4.70
648 649 0.911769 AATGTTCGGATCCAGCTCCA 59.088 50.000 13.41 0.75 34.78 3.86
649 650 0.911769 ATGTTCGGATCCAGCTCCAA 59.088 50.000 13.41 0.00 34.78 3.53
650 651 0.911769 TGTTCGGATCCAGCTCCAAT 59.088 50.000 13.41 0.00 34.78 3.16
651 652 2.115427 TGTTCGGATCCAGCTCCAATA 58.885 47.619 13.41 0.00 34.78 1.90
652 653 2.705658 TGTTCGGATCCAGCTCCAATAT 59.294 45.455 13.41 0.00 34.78 1.28
653 654 3.901222 TGTTCGGATCCAGCTCCAATATA 59.099 43.478 13.41 0.00 34.78 0.86
654 655 4.346709 TGTTCGGATCCAGCTCCAATATAA 59.653 41.667 13.41 0.00 34.78 0.98
655 656 4.808414 TCGGATCCAGCTCCAATATAAG 57.192 45.455 13.41 0.00 34.78 1.73
683 684 2.987413 TGGCACAAAACTCTAATGCG 57.013 45.000 0.00 0.00 37.15 4.73
684 685 2.226330 TGGCACAAAACTCTAATGCGT 58.774 42.857 0.00 0.00 37.15 5.24
685 686 2.225491 TGGCACAAAACTCTAATGCGTC 59.775 45.455 0.00 0.00 37.15 5.19
714 716 6.308766 GTGAACAATCAGATTTTGTATGCCAC 59.691 38.462 0.00 0.00 36.32 5.01
788 790 2.159085 GGACGGAGGGAGTAATCAGTTG 60.159 54.545 0.00 0.00 0.00 3.16
801 803 0.529773 TCAGTTGTGTCACGAGCACC 60.530 55.000 0.00 0.00 36.11 5.01
802 804 0.809636 CAGTTGTGTCACGAGCACCA 60.810 55.000 0.00 0.00 36.11 4.17
803 805 0.530650 AGTTGTGTCACGAGCACCAG 60.531 55.000 0.00 0.00 36.11 4.00
813 815 0.523072 CGAGCACCAGACAAAATGGG 59.477 55.000 0.00 0.00 42.48 4.00
820 822 4.797275 GCACCAGACAAAATGGGAAGAAAG 60.797 45.833 0.00 0.00 42.48 2.62
823 825 5.069119 ACCAGACAAAATGGGAAGAAAGTTC 59.931 40.000 0.00 0.00 42.48 3.01
826 828 7.014230 CCAGACAAAATGGGAAGAAAGTTCTTA 59.986 37.037 6.29 0.00 46.84 2.10
832 834 6.943899 ATGGGAAGAAAGTTCTTAGAGACT 57.056 37.500 6.29 0.00 46.84 3.24
837 839 6.127563 GGAAGAAAGTTCTTAGAGACTCCGAT 60.128 42.308 6.29 0.00 46.84 4.18
841 843 2.691011 GTTCTTAGAGACTCCGATGCCT 59.309 50.000 0.00 0.00 0.00 4.75
856 858 2.682893 GCCTGTATTCGGCTGTCAG 58.317 57.895 0.00 0.00 44.17 3.51
863 865 1.198713 ATTCGGCTGTCAGATCACCT 58.801 50.000 3.32 0.00 0.00 4.00
991 2188 3.873910 TGCACTCCTAAAGCTGTATTCC 58.126 45.455 0.00 0.00 0.00 3.01
992 2189 3.519510 TGCACTCCTAAAGCTGTATTCCT 59.480 43.478 0.00 0.00 0.00 3.36
1072 2269 0.460722 GGACTACTTCTTCGGGAGGC 59.539 60.000 0.00 0.00 0.00 4.70
1113 2310 2.928334 GGACTCTCCTACACCGATACA 58.072 52.381 0.00 0.00 32.53 2.29
1125 2322 3.712881 GATACATTCCGCGGCGCC 61.713 66.667 27.87 19.07 0.00 6.53
1156 2353 1.048160 CCTTCCTCTCCCCAGCTCTC 61.048 65.000 0.00 0.00 0.00 3.20
1157 2354 0.032217 CTTCCTCTCCCCAGCTCTCT 60.032 60.000 0.00 0.00 0.00 3.10
1158 2355 0.415429 TTCCTCTCCCCAGCTCTCTT 59.585 55.000 0.00 0.00 0.00 2.85
1159 2356 0.032615 TCCTCTCCCCAGCTCTCTTC 60.033 60.000 0.00 0.00 0.00 2.87
1160 2357 1.048160 CCTCTCCCCAGCTCTCTTCC 61.048 65.000 0.00 0.00 0.00 3.46
1161 2358 0.032217 CTCTCCCCAGCTCTCTTCCT 60.032 60.000 0.00 0.00 0.00 3.36
1162 2359 0.415429 TCTCCCCAGCTCTCTTCCTT 59.585 55.000 0.00 0.00 0.00 3.36
1163 2360 1.203364 TCTCCCCAGCTCTCTTCCTTT 60.203 52.381 0.00 0.00 0.00 3.11
1164 2361 1.632920 CTCCCCAGCTCTCTTCCTTTT 59.367 52.381 0.00 0.00 0.00 2.27
1165 2362 2.040947 CTCCCCAGCTCTCTTCCTTTTT 59.959 50.000 0.00 0.00 0.00 1.94
1347 2544 1.072331 ACTTGTTGATCTCCGTGGCTT 59.928 47.619 0.00 0.00 0.00 4.35
1391 2588 0.906756 TCTGGACTGGAGGCTGGAAG 60.907 60.000 0.00 0.00 0.00 3.46
1481 2678 1.135315 GCATACGCAGCAACCAGTG 59.865 57.895 0.00 0.00 38.36 3.66
1521 2739 7.464844 GCTGTTTTTGTGTGTGGGTAAATTAAC 60.465 37.037 0.00 0.00 0.00 2.01
1580 2798 2.386661 TGAGTTGCTAGCTGTTAGGC 57.613 50.000 17.23 0.00 0.00 3.93
1607 2825 4.097437 TGAATCCTTCATGCTGATGCTTTC 59.903 41.667 0.00 0.00 35.90 2.62
1659 2877 7.278203 TGCATGCATAAGAAAATTTATGTGGTG 59.722 33.333 18.46 5.69 41.14 4.17
1680 2898 6.320672 TGGTGTCCTGTAGCTAATTAGTACTC 59.679 42.308 13.91 3.88 0.00 2.59
1682 2900 5.832060 TGTCCTGTAGCTAATTAGTACTCCC 59.168 44.000 13.91 0.00 0.00 4.30
1683 2901 6.069994 GTCCTGTAGCTAATTAGTACTCCCT 58.930 44.000 13.91 4.16 0.00 4.20
1684 2902 6.207221 GTCCTGTAGCTAATTAGTACTCCCTC 59.793 46.154 13.91 0.00 0.00 4.30
1685 2903 5.477637 CCTGTAGCTAATTAGTACTCCCTCC 59.522 48.000 13.91 0.00 0.00 4.30
1686 2904 5.068636 TGTAGCTAATTAGTACTCCCTCCG 58.931 45.833 13.91 0.00 0.00 4.63
1687 2905 4.181799 AGCTAATTAGTACTCCCTCCGT 57.818 45.455 13.91 0.00 0.00 4.69
1688 2906 5.316158 AGCTAATTAGTACTCCCTCCGTA 57.684 43.478 13.91 0.00 0.00 4.02
1689 2907 5.699143 AGCTAATTAGTACTCCCTCCGTAA 58.301 41.667 13.91 0.00 0.00 3.18
1690 2908 5.769162 AGCTAATTAGTACTCCCTCCGTAAG 59.231 44.000 13.91 0.00 0.00 2.34
1691 2909 5.767168 GCTAATTAGTACTCCCTCCGTAAGA 59.233 44.000 13.91 0.00 43.02 2.10
1692 2910 6.293900 GCTAATTAGTACTCCCTCCGTAAGAC 60.294 46.154 13.91 0.00 43.02 3.01
1693 2911 4.574674 TTAGTACTCCCTCCGTAAGACA 57.425 45.455 0.00 0.00 43.02 3.41
1694 2912 2.720915 AGTACTCCCTCCGTAAGACAC 58.279 52.381 0.00 0.00 43.02 3.67
1695 2913 2.308275 AGTACTCCCTCCGTAAGACACT 59.692 50.000 0.00 0.00 43.02 3.55
1696 2914 2.305858 ACTCCCTCCGTAAGACACTT 57.694 50.000 0.00 0.00 43.02 3.16
1697 2915 3.446442 ACTCCCTCCGTAAGACACTTA 57.554 47.619 0.00 0.00 43.02 2.24
1698 2916 3.978610 ACTCCCTCCGTAAGACACTTAT 58.021 45.455 0.00 0.00 43.02 1.73
1699 2917 4.351127 ACTCCCTCCGTAAGACACTTATT 58.649 43.478 0.00 0.00 43.02 1.40
1700 2918 4.776308 ACTCCCTCCGTAAGACACTTATTT 59.224 41.667 0.00 0.00 43.02 1.40
1701 2919 5.247792 ACTCCCTCCGTAAGACACTTATTTT 59.752 40.000 0.00 0.00 43.02 1.82
1702 2920 5.484715 TCCCTCCGTAAGACACTTATTTTG 58.515 41.667 0.00 0.00 43.02 2.44
1703 2921 4.634443 CCCTCCGTAAGACACTTATTTTGG 59.366 45.833 0.00 0.00 43.02 3.28
1704 2922 4.634443 CCTCCGTAAGACACTTATTTTGGG 59.366 45.833 0.00 0.00 43.02 4.12
1705 2923 5.484715 CTCCGTAAGACACTTATTTTGGGA 58.515 41.667 0.00 0.00 43.02 4.37
1706 2924 5.240121 TCCGTAAGACACTTATTTTGGGAC 58.760 41.667 0.00 0.00 43.02 4.46
1707 2925 4.092383 CCGTAAGACACTTATTTTGGGACG 59.908 45.833 0.00 0.00 43.02 4.79
1708 2926 4.092383 CGTAAGACACTTATTTTGGGACGG 59.908 45.833 0.00 0.00 43.02 4.79
1709 2927 4.360951 AAGACACTTATTTTGGGACGGA 57.639 40.909 0.00 0.00 0.00 4.69
1710 2928 3.939066 AGACACTTATTTTGGGACGGAG 58.061 45.455 0.00 0.00 0.00 4.63
1711 2929 3.007635 GACACTTATTTTGGGACGGAGG 58.992 50.000 0.00 0.00 0.00 4.30
1712 2930 2.290705 ACACTTATTTTGGGACGGAGGG 60.291 50.000 0.00 0.00 0.00 4.30
1713 2931 2.026636 CACTTATTTTGGGACGGAGGGA 60.027 50.000 0.00 0.00 0.00 4.20
1714 2932 2.238898 ACTTATTTTGGGACGGAGGGAG 59.761 50.000 0.00 0.00 0.00 4.30
1766 4306 5.116983 CGTGTTGAAATACAAATGAAGGCAC 59.883 40.000 0.00 0.00 40.36 5.01
1870 4410 3.052036 GCAGTACACATTTGCAACAAGG 58.948 45.455 0.00 0.00 37.75 3.61
1879 4419 3.634568 TTTGCAACAAGGGTGTTATCG 57.365 42.857 0.00 0.00 46.47 2.92
1908 4448 9.556030 CTTATTTTCCTTCATCGTTTCCTTTAC 57.444 33.333 0.00 0.00 0.00 2.01
2148 4689 4.963276 CTTGTTGTCAAGGTTCAAGTCA 57.037 40.909 5.79 0.00 45.02 3.41
2374 4920 0.521735 GTCGCCCTTAACAAGCCTTG 59.478 55.000 2.11 2.11 0.00 3.61
2567 5113 3.728845 TGTTTAGTTCACTCTGACCAGC 58.271 45.455 0.00 0.00 0.00 4.85
2615 5161 2.239654 TCCTTGCCTATGAAACCAGGAG 59.760 50.000 0.00 0.00 33.42 3.69
2650 5196 3.445096 ACATATTTGCTGTTTCTGGAGCC 59.555 43.478 0.00 0.00 34.04 4.70
2702 5248 2.099263 CCTTCTGCAATGAAGCCTCATG 59.901 50.000 9.62 0.00 41.66 3.07
2827 5376 7.490657 TGTTCCATGTTATTAGGTCTACTGT 57.509 36.000 0.00 0.00 0.00 3.55
3170 5729 1.539929 CGGCCATTCTTGCAAACCAAA 60.540 47.619 2.24 0.00 31.94 3.28
3238 5972 3.947834 CTCAACCCATAGGATTGGTTCAC 59.052 47.826 0.00 0.00 40.31 3.18
3622 6356 5.521906 AAGGGCTCTCAAAAAGAAAAGAC 57.478 39.130 0.00 0.00 32.23 3.01
3687 6622 1.421485 GCAGACATGTAGCGCACAC 59.579 57.895 11.47 7.82 40.86 3.82
3751 6686 5.335269 CCGCTAGATGAATACAGTCGAGATT 60.335 44.000 0.00 0.00 0.00 2.40
3841 6778 2.223923 GCATGAATAGCTCGGAGTGTCT 60.224 50.000 6.90 0.00 0.00 3.41
3856 6820 1.964223 GTGTCTGTCTCCAGTTCCAGA 59.036 52.381 0.00 0.00 39.82 3.86
3937 6909 1.351012 CTGCTGTTAGCGCTGCATC 59.649 57.895 22.90 14.72 46.26 3.91
3954 6926 2.575532 CATCGGACATGGCCTTATGTT 58.424 47.619 17.64 0.00 41.15 2.71
4023 6995 5.091261 AGTGTGTGTTCTTGAGAGACTTT 57.909 39.130 0.00 0.00 0.00 2.66
4123 7095 4.258543 TGACATCGTTCCCTCAAATTACC 58.741 43.478 0.00 0.00 0.00 2.85
4292 7264 5.376854 AACACTCTTGTTATTGTGATGGC 57.623 39.130 0.00 0.00 44.53 4.40
4335 7307 3.587506 TCCTTCCAGGCTTAGCTAAAAGT 59.412 43.478 7.74 0.00 34.61 2.66
4474 7453 1.265236 TGGTGGGCAGCCTAAATTTG 58.735 50.000 12.43 0.00 0.00 2.32
5362 8352 1.002868 GATGTGCAGCAGGTGACCT 60.003 57.895 0.00 0.00 0.00 3.85
5635 8637 9.436957 AGTATTGTTGGATAGTTTCTAGTTGTG 57.563 33.333 0.00 0.00 0.00 3.33
5668 8670 0.588252 CTGGTTGGCAGAACGAACTG 59.412 55.000 8.67 8.67 37.18 3.16
5677 8679 2.286950 GCAGAACGAACTGTGCAATTGA 60.287 45.455 10.34 0.00 39.73 2.57
5755 8757 6.709018 TTCTTGTTAGTCCCTTTCCTTTTG 57.291 37.500 0.00 0.00 0.00 2.44
5778 8780 3.291585 GTTCACTGAGCAACAAACGATG 58.708 45.455 0.00 0.00 0.00 3.84
5793 8795 2.688507 ACGATGATGACTGAACACCAC 58.311 47.619 0.00 0.00 0.00 4.16
5821 8824 5.425539 TGTTTTCCCCTTACATTTTTGTGGA 59.574 36.000 0.00 0.00 0.00 4.02
5836 8839 0.458669 GTGGATGGCTTTGCAGATGG 59.541 55.000 0.00 0.00 0.00 3.51
5847 8850 4.397417 GCTTTGCAGATGGTGAAGATAACT 59.603 41.667 0.00 0.00 0.00 2.24
5909 8912 3.843426 CGATCCGCAAGTTGATACTTC 57.157 47.619 7.16 0.00 42.67 3.01
5985 8989 3.299503 AGAGTTCACAGGCCATGTTTTT 58.700 40.909 5.01 0.00 41.41 1.94
5993 8997 1.623311 AGGCCATGTTTTTACAAGCCC 59.377 47.619 5.01 0.00 41.35 5.19
5994 8998 1.346068 GGCCATGTTTTTACAAGCCCA 59.654 47.619 0.00 0.00 37.23 5.36
6037 9041 3.737047 CGCTAACGTCCACATATGAGGTT 60.737 47.826 17.46 11.35 41.89 3.50
6044 9050 4.093408 CGTCCACATATGAGGTTTTGAGTG 59.907 45.833 17.46 0.00 0.00 3.51
6144 9150 0.539669 TCACTGGACGCTTCTGAGGA 60.540 55.000 0.00 0.00 0.00 3.71
6164 9170 4.540099 AGGAGGAACCATGAGGAACATTTA 59.460 41.667 0.00 0.00 42.04 1.40
6237 9244 0.611200 ATGCATGCACACAGCCAAAT 59.389 45.000 25.37 0.00 44.83 2.32
6254 9261 4.731773 GCCAAATGATGTACTAACTGCTGC 60.732 45.833 0.00 0.00 0.00 5.25
6470 9645 3.764434 GCCCTACATCTGAATCGAGGATA 59.236 47.826 0.00 0.00 0.00 2.59
6525 9701 6.725364 ACATAAATGAACCCATCTCTGTTCT 58.275 36.000 0.00 0.00 41.10 3.01
6561 9737 2.443887 TATACGGCGGATTTACCAGC 57.556 50.000 11.19 0.00 38.90 4.85
6627 9806 0.667487 GTGTTCGCAGCAGCAGAGTA 60.667 55.000 0.82 0.00 42.27 2.59
6689 9874 0.762461 CACCATCTCTCCCTCCCTCC 60.762 65.000 0.00 0.00 0.00 4.30
6890 10075 2.368011 GGCGAGGAAACCCTAGGCT 61.368 63.158 2.05 0.00 44.68 4.58
6892 10077 1.823976 CGAGGAAACCCTAGGCTCC 59.176 63.158 2.05 8.90 33.25 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 8.664798 CCATAATCTCATTTTAACACTTCGACA 58.335 33.333 0.00 0.00 0.00 4.35
59 60 4.961099 AGTTCTCTGATGATGATGTCTCCA 59.039 41.667 0.00 0.00 0.00 3.86
68 69 4.126208 AGCACAGAGTTCTCTGATGATG 57.874 45.455 29.07 19.67 39.99 3.07
98 99 1.135257 CCTAAGTCTCGACTGCTGGTG 60.135 57.143 0.00 0.00 41.58 4.17
108 109 3.142951 AGGATCATCGACCTAAGTCTCG 58.857 50.000 0.00 0.00 41.16 4.04
131 132 1.906574 TCCTACGGTTCAAGCCTTCAT 59.093 47.619 0.00 0.00 0.00 2.57
159 160 3.704566 ACGTCCATCTCCTATTGCTACAA 59.295 43.478 0.00 0.00 0.00 2.41
166 167 5.160607 TGTGAAAACGTCCATCTCCTATT 57.839 39.130 0.00 0.00 0.00 1.73
178 179 1.890510 GGGCGGACTGTGAAAACGT 60.891 57.895 0.00 0.00 0.00 3.99
180 181 0.310854 CTTGGGCGGACTGTGAAAAC 59.689 55.000 0.00 0.00 0.00 2.43
230 231 0.954452 GCCCCTTGATAATGAAGGCG 59.046 55.000 0.00 0.00 39.02 5.52
237 238 8.428852 GTTACAATTTATTGGCCCCTTGATAAT 58.571 33.333 0.00 0.00 41.96 1.28
248 249 8.494016 AGAGTACTCTGTTACAATTTATTGGC 57.506 34.615 24.62 0.00 39.13 4.52
265 266 3.620929 TGTTCACACGTCAGAGTACTC 57.379 47.619 15.41 15.41 0.00 2.59
306 307 0.833949 GGAGGGAGTAGCTTCCAAGG 59.166 60.000 6.77 0.00 39.09 3.61
349 350 4.679373 TCCTTGAGCATGTTAGAGGATC 57.321 45.455 8.69 0.00 0.00 3.36
350 351 5.045286 ACTTTCCTTGAGCATGTTAGAGGAT 60.045 40.000 12.28 0.00 33.64 3.24
351 352 4.287067 ACTTTCCTTGAGCATGTTAGAGGA 59.713 41.667 8.69 8.69 0.00 3.71
352 353 4.583871 ACTTTCCTTGAGCATGTTAGAGG 58.416 43.478 4.79 4.79 0.00 3.69
353 354 5.121454 GTGACTTTCCTTGAGCATGTTAGAG 59.879 44.000 0.00 0.00 0.00 2.43
354 355 4.997395 GTGACTTTCCTTGAGCATGTTAGA 59.003 41.667 0.00 0.00 0.00 2.10
355 356 4.999950 AGTGACTTTCCTTGAGCATGTTAG 59.000 41.667 0.00 0.00 0.00 2.34
356 357 4.756642 CAGTGACTTTCCTTGAGCATGTTA 59.243 41.667 0.00 0.00 0.00 2.41
357 358 3.567164 CAGTGACTTTCCTTGAGCATGTT 59.433 43.478 0.00 0.00 0.00 2.71
358 359 3.144506 CAGTGACTTTCCTTGAGCATGT 58.855 45.455 0.00 0.00 0.00 3.21
359 360 3.405831 TCAGTGACTTTCCTTGAGCATG 58.594 45.455 0.00 0.00 0.00 4.06
360 361 3.672808 CTCAGTGACTTTCCTTGAGCAT 58.327 45.455 0.00 0.00 0.00 3.79
361 362 3.117491 CTCAGTGACTTTCCTTGAGCA 57.883 47.619 0.00 0.00 0.00 4.26
363 364 3.399440 AGCTCAGTGACTTTCCTTGAG 57.601 47.619 0.00 0.00 38.57 3.02
364 365 4.152647 TCTAGCTCAGTGACTTTCCTTGA 58.847 43.478 0.00 0.00 0.00 3.02
365 366 4.021544 ACTCTAGCTCAGTGACTTTCCTTG 60.022 45.833 0.00 0.00 0.00 3.61
366 367 4.021544 CACTCTAGCTCAGTGACTTTCCTT 60.022 45.833 17.30 0.00 43.54 3.36
367 368 3.509575 CACTCTAGCTCAGTGACTTTCCT 59.490 47.826 17.30 0.00 43.54 3.36
368 369 3.367910 CCACTCTAGCTCAGTGACTTTCC 60.368 52.174 21.95 0.00 43.54 3.13
369 370 3.257127 ACCACTCTAGCTCAGTGACTTTC 59.743 47.826 21.95 0.00 43.54 2.62
370 371 3.006323 CACCACTCTAGCTCAGTGACTTT 59.994 47.826 21.95 5.67 43.54 2.66
371 372 2.560542 CACCACTCTAGCTCAGTGACTT 59.439 50.000 21.95 7.60 43.54 3.01
372 373 2.166829 CACCACTCTAGCTCAGTGACT 58.833 52.381 21.95 8.14 43.54 3.41
373 374 1.889829 ACACCACTCTAGCTCAGTGAC 59.110 52.381 21.95 0.00 43.54 3.67
374 375 2.294449 ACACCACTCTAGCTCAGTGA 57.706 50.000 21.95 0.00 43.54 3.41
375 376 3.062763 CAAACACCACTCTAGCTCAGTG 58.937 50.000 15.84 15.84 40.96 3.66
376 377 2.700897 ACAAACACCACTCTAGCTCAGT 59.299 45.455 0.00 0.00 0.00 3.41
377 378 3.062763 CACAAACACCACTCTAGCTCAG 58.937 50.000 0.00 0.00 0.00 3.35
378 379 2.434336 ACACAAACACCACTCTAGCTCA 59.566 45.455 0.00 0.00 0.00 4.26
379 380 3.113260 ACACAAACACCACTCTAGCTC 57.887 47.619 0.00 0.00 0.00 4.09
380 381 4.682778 TTACACAAACACCACTCTAGCT 57.317 40.909 0.00 0.00 0.00 3.32
381 382 5.744666 TTTTACACAAACACCACTCTAGC 57.255 39.130 0.00 0.00 0.00 3.42
401 402 5.380900 CTCCCTGACTTTCCTTCTCTTTTT 58.619 41.667 0.00 0.00 0.00 1.94
402 403 4.748239 GCTCCCTGACTTTCCTTCTCTTTT 60.748 45.833 0.00 0.00 0.00 2.27
403 404 3.244735 GCTCCCTGACTTTCCTTCTCTTT 60.245 47.826 0.00 0.00 0.00 2.52
404 405 2.304470 GCTCCCTGACTTTCCTTCTCTT 59.696 50.000 0.00 0.00 0.00 2.85
405 406 1.905894 GCTCCCTGACTTTCCTTCTCT 59.094 52.381 0.00 0.00 0.00 3.10
406 407 1.905894 AGCTCCCTGACTTTCCTTCTC 59.094 52.381 0.00 0.00 0.00 2.87
407 408 2.037385 AGCTCCCTGACTTTCCTTCT 57.963 50.000 0.00 0.00 0.00 2.85
408 409 2.869101 AAGCTCCCTGACTTTCCTTC 57.131 50.000 0.00 0.00 0.00 3.46
409 410 3.846588 TCATAAGCTCCCTGACTTTCCTT 59.153 43.478 0.00 0.00 0.00 3.36
410 411 3.454858 TCATAAGCTCCCTGACTTTCCT 58.545 45.455 0.00 0.00 0.00 3.36
411 412 3.914426 TCATAAGCTCCCTGACTTTCC 57.086 47.619 0.00 0.00 0.00 3.13
412 413 6.375455 TCAATTTCATAAGCTCCCTGACTTTC 59.625 38.462 0.00 0.00 0.00 2.62
413 414 6.248433 TCAATTTCATAAGCTCCCTGACTTT 58.752 36.000 0.00 0.00 0.00 2.66
414 415 5.819991 TCAATTTCATAAGCTCCCTGACTT 58.180 37.500 0.00 0.00 0.00 3.01
415 416 5.441718 TCAATTTCATAAGCTCCCTGACT 57.558 39.130 0.00 0.00 0.00 3.41
416 417 6.515272 TTTCAATTTCATAAGCTCCCTGAC 57.485 37.500 0.00 0.00 0.00 3.51
417 418 9.425248 AATATTTCAATTTCATAAGCTCCCTGA 57.575 29.630 0.00 0.00 0.00 3.86
472 473 9.665264 GTTCAATTTTAGAAGACTCGTTTCAAT 57.335 29.630 0.00 0.00 0.00 2.57
473 474 8.889717 AGTTCAATTTTAGAAGACTCGTTTCAA 58.110 29.630 0.00 0.00 0.00 2.69
474 475 8.433421 AGTTCAATTTTAGAAGACTCGTTTCA 57.567 30.769 0.00 0.00 0.00 2.69
475 476 9.159470 CAAGTTCAATTTTAGAAGACTCGTTTC 57.841 33.333 0.00 0.00 0.00 2.78
476 477 8.129211 CCAAGTTCAATTTTAGAAGACTCGTTT 58.871 33.333 0.00 0.00 0.00 3.60
477 478 7.497909 TCCAAGTTCAATTTTAGAAGACTCGTT 59.502 33.333 0.00 0.00 0.00 3.85
478 479 6.990349 TCCAAGTTCAATTTTAGAAGACTCGT 59.010 34.615 0.00 0.00 0.00 4.18
479 480 7.421530 TCCAAGTTCAATTTTAGAAGACTCG 57.578 36.000 0.00 0.00 0.00 4.18
480 481 9.617975 CATTCCAAGTTCAATTTTAGAAGACTC 57.382 33.333 0.00 0.00 0.00 3.36
481 482 9.136323 ACATTCCAAGTTCAATTTTAGAAGACT 57.864 29.630 0.00 0.00 0.00 3.24
482 483 9.399403 GACATTCCAAGTTCAATTTTAGAAGAC 57.601 33.333 0.00 0.00 0.00 3.01
483 484 9.130661 TGACATTCCAAGTTCAATTTTAGAAGA 57.869 29.630 0.00 0.00 0.00 2.87
484 485 9.185192 GTGACATTCCAAGTTCAATTTTAGAAG 57.815 33.333 0.00 0.00 0.00 2.85
485 486 8.690884 TGTGACATTCCAAGTTCAATTTTAGAA 58.309 29.630 0.00 0.00 0.00 2.10
486 487 8.231692 TGTGACATTCCAAGTTCAATTTTAGA 57.768 30.769 0.00 0.00 0.00 2.10
487 488 8.870160 TTGTGACATTCCAAGTTCAATTTTAG 57.130 30.769 0.00 0.00 0.00 1.85
488 489 9.829507 ATTTGTGACATTCCAAGTTCAATTTTA 57.170 25.926 0.00 0.00 0.00 1.52
489 490 8.735692 ATTTGTGACATTCCAAGTTCAATTTT 57.264 26.923 0.00 0.00 0.00 1.82
490 491 8.614346 CAATTTGTGACATTCCAAGTTCAATTT 58.386 29.630 0.00 0.00 0.00 1.82
491 492 7.986320 TCAATTTGTGACATTCCAAGTTCAATT 59.014 29.630 0.00 0.00 0.00 2.32
492 493 7.499292 TCAATTTGTGACATTCCAAGTTCAAT 58.501 30.769 0.00 0.00 0.00 2.57
493 494 6.871844 TCAATTTGTGACATTCCAAGTTCAA 58.128 32.000 0.00 0.00 0.00 2.69
494 495 6.462552 TCAATTTGTGACATTCCAAGTTCA 57.537 33.333 0.00 0.00 0.00 3.18
495 496 7.769272 TTTCAATTTGTGACATTCCAAGTTC 57.231 32.000 0.00 0.00 35.39 3.01
496 497 8.614346 CAATTTCAATTTGTGACATTCCAAGTT 58.386 29.630 0.00 0.00 34.97 2.66
497 498 7.986320 TCAATTTCAATTTGTGACATTCCAAGT 59.014 29.630 0.00 0.00 34.97 3.16
498 499 8.367943 TCAATTTCAATTTGTGACATTCCAAG 57.632 30.769 0.00 0.00 34.97 3.61
499 500 8.905660 ATCAATTTCAATTTGTGACATTCCAA 57.094 26.923 0.00 0.00 34.97 3.53
500 501 8.369424 AGATCAATTTCAATTTGTGACATTCCA 58.631 29.630 0.00 0.00 34.97 3.53
501 502 8.767478 AGATCAATTTCAATTTGTGACATTCC 57.233 30.769 0.00 0.00 34.97 3.01
519 520 9.428097 GCAGGTTTCAATTTCTAAAAGATCAAT 57.572 29.630 0.00 0.00 0.00 2.57
520 521 7.872483 GGCAGGTTTCAATTTCTAAAAGATCAA 59.128 33.333 0.00 0.00 0.00 2.57
521 522 7.233348 AGGCAGGTTTCAATTTCTAAAAGATCA 59.767 33.333 0.00 0.00 0.00 2.92
522 523 7.606349 AGGCAGGTTTCAATTTCTAAAAGATC 58.394 34.615 0.00 0.00 0.00 2.75
523 524 7.544804 AGGCAGGTTTCAATTTCTAAAAGAT 57.455 32.000 0.00 0.00 0.00 2.40
524 525 6.976934 AGGCAGGTTTCAATTTCTAAAAGA 57.023 33.333 0.00 0.00 0.00 2.52
525 526 8.337532 CAAAAGGCAGGTTTCAATTTCTAAAAG 58.662 33.333 0.00 0.00 0.00 2.27
526 527 8.043710 TCAAAAGGCAGGTTTCAATTTCTAAAA 58.956 29.630 0.00 0.00 0.00 1.52
527 528 7.560368 TCAAAAGGCAGGTTTCAATTTCTAAA 58.440 30.769 0.00 0.00 0.00 1.85
528 529 7.118496 TCAAAAGGCAGGTTTCAATTTCTAA 57.882 32.000 0.00 0.00 0.00 2.10
529 530 6.723298 TCAAAAGGCAGGTTTCAATTTCTA 57.277 33.333 0.00 0.00 0.00 2.10
530 531 5.612725 TCAAAAGGCAGGTTTCAATTTCT 57.387 34.783 0.00 0.00 0.00 2.52
531 532 6.676237 TTTCAAAAGGCAGGTTTCAATTTC 57.324 33.333 0.00 0.00 0.00 2.17
532 533 7.643569 ATTTTCAAAAGGCAGGTTTCAATTT 57.356 28.000 0.00 0.00 0.00 1.82
533 534 7.338957 TCAATTTTCAAAAGGCAGGTTTCAATT 59.661 29.630 0.00 0.00 0.00 2.32
534 535 6.827762 TCAATTTTCAAAAGGCAGGTTTCAAT 59.172 30.769 0.00 0.00 0.00 2.57
535 536 6.176183 TCAATTTTCAAAAGGCAGGTTTCAA 58.824 32.000 0.00 0.00 0.00 2.69
536 537 5.738909 TCAATTTTCAAAAGGCAGGTTTCA 58.261 33.333 0.00 0.00 0.00 2.69
537 538 6.676237 TTCAATTTTCAAAAGGCAGGTTTC 57.324 33.333 0.00 0.00 0.00 2.78
538 539 7.643569 ATTTCAATTTTCAAAAGGCAGGTTT 57.356 28.000 0.00 0.00 0.00 3.27
539 540 8.744568 TTATTTCAATTTTCAAAAGGCAGGTT 57.255 26.923 0.00 0.00 0.00 3.50
540 541 7.041167 GCTTATTTCAATTTTCAAAAGGCAGGT 60.041 33.333 0.00 0.00 0.00 4.00
541 542 7.041235 TGCTTATTTCAATTTTCAAAAGGCAGG 60.041 33.333 0.00 0.00 0.00 4.85
542 543 7.799914 GTGCTTATTTCAATTTTCAAAAGGCAG 59.200 33.333 0.00 0.00 0.00 4.85
543 544 7.498570 AGTGCTTATTTCAATTTTCAAAAGGCA 59.501 29.630 0.00 0.00 0.00 4.75
544 545 7.799914 CAGTGCTTATTTCAATTTTCAAAAGGC 59.200 33.333 0.00 0.00 0.00 4.35
545 546 8.829612 ACAGTGCTTATTTCAATTTTCAAAAGG 58.170 29.630 0.00 0.00 0.00 3.11
548 549 9.376075 TGAACAGTGCTTATTTCAATTTTCAAA 57.624 25.926 0.00 0.00 29.21 2.69
549 550 8.939201 TGAACAGTGCTTATTTCAATTTTCAA 57.061 26.923 0.00 0.00 29.21 2.69
550 551 8.980610 CATGAACAGTGCTTATTTCAATTTTCA 58.019 29.630 0.00 0.00 34.31 2.69
551 552 8.437742 CCATGAACAGTGCTTATTTCAATTTTC 58.562 33.333 0.00 0.00 31.96 2.29
552 553 7.388500 CCCATGAACAGTGCTTATTTCAATTTT 59.612 33.333 0.00 0.00 31.96 1.82
553 554 6.875195 CCCATGAACAGTGCTTATTTCAATTT 59.125 34.615 0.00 0.00 31.96 1.82
554 555 6.400568 CCCATGAACAGTGCTTATTTCAATT 58.599 36.000 0.00 0.00 31.96 2.32
555 556 5.625197 GCCCATGAACAGTGCTTATTTCAAT 60.625 40.000 0.00 0.00 31.96 2.57
556 557 4.321899 GCCCATGAACAGTGCTTATTTCAA 60.322 41.667 0.00 0.00 31.96 2.69
557 558 3.193267 GCCCATGAACAGTGCTTATTTCA 59.807 43.478 0.00 0.00 32.71 2.69
558 559 3.445096 AGCCCATGAACAGTGCTTATTTC 59.555 43.478 0.00 0.00 0.00 2.17
559 560 3.434309 AGCCCATGAACAGTGCTTATTT 58.566 40.909 0.00 0.00 0.00 1.40
560 561 3.091633 AGCCCATGAACAGTGCTTATT 57.908 42.857 0.00 0.00 0.00 1.40
561 562 2.814805 AGCCCATGAACAGTGCTTAT 57.185 45.000 0.00 0.00 0.00 1.73
562 563 3.263170 TCTTAGCCCATGAACAGTGCTTA 59.737 43.478 0.00 0.00 33.63 3.09
563 564 2.040278 TCTTAGCCCATGAACAGTGCTT 59.960 45.455 0.00 0.00 33.63 3.91
564 565 1.630369 TCTTAGCCCATGAACAGTGCT 59.370 47.619 0.00 0.00 36.11 4.40
565 566 2.012673 CTCTTAGCCCATGAACAGTGC 58.987 52.381 0.00 0.00 0.00 4.40
566 567 3.005554 CACTCTTAGCCCATGAACAGTG 58.994 50.000 0.00 0.00 0.00 3.66
567 568 2.906389 TCACTCTTAGCCCATGAACAGT 59.094 45.455 0.00 0.00 0.00 3.55
568 569 3.616956 TCACTCTTAGCCCATGAACAG 57.383 47.619 0.00 0.00 0.00 3.16
569 570 4.041567 TCTTTCACTCTTAGCCCATGAACA 59.958 41.667 0.00 0.00 0.00 3.18
570 571 4.579869 TCTTTCACTCTTAGCCCATGAAC 58.420 43.478 0.00 0.00 0.00 3.18
571 572 4.908601 TCTTTCACTCTTAGCCCATGAA 57.091 40.909 0.00 0.00 0.00 2.57
572 573 4.908601 TTCTTTCACTCTTAGCCCATGA 57.091 40.909 0.00 0.00 0.00 3.07
573 574 5.006386 ACTTTCTTTCACTCTTAGCCCATG 58.994 41.667 0.00 0.00 0.00 3.66
574 575 5.248380 ACTTTCTTTCACTCTTAGCCCAT 57.752 39.130 0.00 0.00 0.00 4.00
575 576 4.706842 ACTTTCTTTCACTCTTAGCCCA 57.293 40.909 0.00 0.00 0.00 5.36
576 577 5.644206 CCTAACTTTCTTTCACTCTTAGCCC 59.356 44.000 0.00 0.00 0.00 5.19
577 578 6.231951 ACCTAACTTTCTTTCACTCTTAGCC 58.768 40.000 0.00 0.00 0.00 3.93
578 579 7.731882 AACCTAACTTTCTTTCACTCTTAGC 57.268 36.000 0.00 0.00 0.00 3.09
579 580 9.984190 AGTAACCTAACTTTCTTTCACTCTTAG 57.016 33.333 0.00 0.00 0.00 2.18
580 581 9.760077 CAGTAACCTAACTTTCTTTCACTCTTA 57.240 33.333 0.00 0.00 0.00 2.10
581 582 8.265764 ACAGTAACCTAACTTTCTTTCACTCTT 58.734 33.333 0.00 0.00 0.00 2.85
582 583 7.793036 ACAGTAACCTAACTTTCTTTCACTCT 58.207 34.615 0.00 0.00 0.00 3.24
583 584 9.194271 CTACAGTAACCTAACTTTCTTTCACTC 57.806 37.037 0.00 0.00 0.00 3.51
584 585 7.656542 GCTACAGTAACCTAACTTTCTTTCACT 59.343 37.037 0.00 0.00 0.00 3.41
585 586 7.656542 AGCTACAGTAACCTAACTTTCTTTCAC 59.343 37.037 0.00 0.00 0.00 3.18
586 587 7.732996 AGCTACAGTAACCTAACTTTCTTTCA 58.267 34.615 0.00 0.00 0.00 2.69
587 588 8.604640 AAGCTACAGTAACCTAACTTTCTTTC 57.395 34.615 0.00 0.00 0.00 2.62
588 589 9.486497 GTAAGCTACAGTAACCTAACTTTCTTT 57.514 33.333 0.00 0.00 0.00 2.52
589 590 8.093307 GGTAAGCTACAGTAACCTAACTTTCTT 58.907 37.037 0.00 0.00 0.00 2.52
590 591 7.454066 AGGTAAGCTACAGTAACCTAACTTTCT 59.546 37.037 0.36 0.00 38.78 2.52
591 592 7.544915 CAGGTAAGCTACAGTAACCTAACTTTC 59.455 40.741 1.92 0.00 38.51 2.62
592 593 7.234166 TCAGGTAAGCTACAGTAACCTAACTTT 59.766 37.037 1.92 0.00 38.51 2.66
593 594 6.723052 TCAGGTAAGCTACAGTAACCTAACTT 59.277 38.462 1.92 0.00 38.51 2.66
594 595 6.251471 TCAGGTAAGCTACAGTAACCTAACT 58.749 40.000 1.92 0.00 38.51 2.24
595 596 6.521151 TCAGGTAAGCTACAGTAACCTAAC 57.479 41.667 1.92 0.00 38.51 2.34
596 597 7.729124 ATTCAGGTAAGCTACAGTAACCTAA 57.271 36.000 1.92 0.00 38.51 2.69
597 598 7.147776 GGAATTCAGGTAAGCTACAGTAACCTA 60.148 40.741 7.93 0.00 38.51 3.08
598 599 6.351966 GGAATTCAGGTAAGCTACAGTAACCT 60.352 42.308 7.93 0.00 41.24 3.50
599 600 5.816258 GGAATTCAGGTAAGCTACAGTAACC 59.184 44.000 7.93 0.00 0.00 2.85
600 601 5.816258 GGGAATTCAGGTAAGCTACAGTAAC 59.184 44.000 7.93 0.00 0.00 2.50
601 602 5.724854 AGGGAATTCAGGTAAGCTACAGTAA 59.275 40.000 7.93 0.00 0.00 2.24
602 603 5.278061 AGGGAATTCAGGTAAGCTACAGTA 58.722 41.667 7.93 0.00 0.00 2.74
603 604 4.104831 AGGGAATTCAGGTAAGCTACAGT 58.895 43.478 7.93 0.00 0.00 3.55
604 605 4.762289 AGGGAATTCAGGTAAGCTACAG 57.238 45.455 7.93 0.00 0.00 2.74
605 606 5.013704 TCAAAGGGAATTCAGGTAAGCTACA 59.986 40.000 7.93 0.00 0.00 2.74
606 607 5.497474 TCAAAGGGAATTCAGGTAAGCTAC 58.503 41.667 7.93 0.00 0.00 3.58
607 608 5.772393 TCAAAGGGAATTCAGGTAAGCTA 57.228 39.130 7.93 0.00 0.00 3.32
608 609 4.657814 TCAAAGGGAATTCAGGTAAGCT 57.342 40.909 7.93 0.00 0.00 3.74
609 610 5.185828 ACATTCAAAGGGAATTCAGGTAAGC 59.814 40.000 7.93 0.00 43.76 3.09
610 611 6.840780 ACATTCAAAGGGAATTCAGGTAAG 57.159 37.500 7.93 0.00 43.76 2.34
611 612 6.072175 CGAACATTCAAAGGGAATTCAGGTAA 60.072 38.462 7.93 0.00 43.76 2.85
612 613 5.414454 CGAACATTCAAAGGGAATTCAGGTA 59.586 40.000 7.93 0.00 43.76 3.08
613 614 4.218417 CGAACATTCAAAGGGAATTCAGGT 59.782 41.667 7.93 0.00 43.76 4.00
614 615 4.380867 CCGAACATTCAAAGGGAATTCAGG 60.381 45.833 7.93 0.00 43.76 3.86
615 616 4.458989 TCCGAACATTCAAAGGGAATTCAG 59.541 41.667 7.93 0.00 43.76 3.02
616 617 4.402829 TCCGAACATTCAAAGGGAATTCA 58.597 39.130 7.93 0.00 43.76 2.57
617 618 5.450550 GGATCCGAACATTCAAAGGGAATTC 60.451 44.000 0.00 0.00 43.76 2.17
618 619 4.402474 GGATCCGAACATTCAAAGGGAATT 59.598 41.667 0.00 0.00 43.76 2.17
620 621 3.245087 TGGATCCGAACATTCAAAGGGAA 60.245 43.478 7.39 0.00 40.46 3.97
621 622 2.307392 TGGATCCGAACATTCAAAGGGA 59.693 45.455 7.39 0.00 0.00 4.20
622 623 2.684881 CTGGATCCGAACATTCAAAGGG 59.315 50.000 7.39 0.00 0.00 3.95
623 624 2.098117 GCTGGATCCGAACATTCAAAGG 59.902 50.000 7.39 0.00 0.00 3.11
624 625 3.012518 AGCTGGATCCGAACATTCAAAG 58.987 45.455 7.39 0.00 0.00 2.77
625 626 3.009723 GAGCTGGATCCGAACATTCAAA 58.990 45.455 7.39 0.00 0.00 2.69
626 627 2.632377 GAGCTGGATCCGAACATTCAA 58.368 47.619 7.39 0.00 0.00 2.69
627 628 1.134401 GGAGCTGGATCCGAACATTCA 60.134 52.381 7.39 0.00 0.00 2.57
628 629 1.134401 TGGAGCTGGATCCGAACATTC 60.134 52.381 7.39 0.00 42.77 2.67
629 630 0.911769 TGGAGCTGGATCCGAACATT 59.088 50.000 7.39 0.00 42.77 2.71
630 631 0.911769 TTGGAGCTGGATCCGAACAT 59.088 50.000 7.39 0.00 42.77 2.71
631 632 0.911769 ATTGGAGCTGGATCCGAACA 59.088 50.000 7.39 0.00 42.77 3.18
632 633 2.910688 TATTGGAGCTGGATCCGAAC 57.089 50.000 7.39 0.00 42.77 3.95
633 634 4.838423 TCTTATATTGGAGCTGGATCCGAA 59.162 41.667 7.39 0.00 42.77 4.30
634 635 4.416516 TCTTATATTGGAGCTGGATCCGA 58.583 43.478 7.39 0.00 42.77 4.55
635 636 4.753233 CTCTTATATTGGAGCTGGATCCG 58.247 47.826 7.39 3.14 42.77 4.18
644 645 6.698766 GTGCCAAAAATGCTCTTATATTGGAG 59.301 38.462 5.86 0.00 38.44 3.86
645 646 6.154192 TGTGCCAAAAATGCTCTTATATTGGA 59.846 34.615 5.86 0.00 38.44 3.53
646 647 6.339730 TGTGCCAAAAATGCTCTTATATTGG 58.660 36.000 0.00 0.00 39.02 3.16
647 648 7.830940 TTGTGCCAAAAATGCTCTTATATTG 57.169 32.000 0.00 0.00 0.00 1.90
648 649 8.720562 GTTTTGTGCCAAAAATGCTCTTATATT 58.279 29.630 12.69 0.00 32.02 1.28
649 650 8.096414 AGTTTTGTGCCAAAAATGCTCTTATAT 58.904 29.630 12.69 0.00 32.02 0.86
650 651 7.441017 AGTTTTGTGCCAAAAATGCTCTTATA 58.559 30.769 12.69 0.00 32.02 0.98
651 652 6.290605 AGTTTTGTGCCAAAAATGCTCTTAT 58.709 32.000 12.69 0.00 32.02 1.73
652 653 5.669477 AGTTTTGTGCCAAAAATGCTCTTA 58.331 33.333 12.69 0.00 32.02 2.10
653 654 4.516323 AGTTTTGTGCCAAAAATGCTCTT 58.484 34.783 12.69 0.00 32.02 2.85
654 655 4.122046 GAGTTTTGTGCCAAAAATGCTCT 58.878 39.130 14.94 8.35 32.02 4.09
655 656 4.122046 AGAGTTTTGTGCCAAAAATGCTC 58.878 39.130 14.94 14.77 32.02 4.26
659 660 5.177327 CGCATTAGAGTTTTGTGCCAAAAAT 59.823 36.000 12.69 12.04 32.02 1.82
666 667 3.536158 TGACGCATTAGAGTTTTGTGC 57.464 42.857 0.00 0.00 0.00 4.57
671 672 5.238432 TGTTCACAATGACGCATTAGAGTTT 59.762 36.000 5.03 0.00 32.35 2.66
672 673 4.754618 TGTTCACAATGACGCATTAGAGTT 59.245 37.500 5.03 0.00 32.35 3.01
676 677 5.630061 TGATTGTTCACAATGACGCATTAG 58.370 37.500 9.93 2.68 45.72 1.73
680 681 3.137533 TCTGATTGTTCACAATGACGCA 58.862 40.909 9.93 1.47 45.72 5.24
681 682 3.811722 TCTGATTGTTCACAATGACGC 57.188 42.857 9.93 0.00 45.72 5.19
682 683 6.638063 ACAAAATCTGATTGTTCACAATGACG 59.362 34.615 9.93 0.00 45.72 4.35
683 684 7.935338 ACAAAATCTGATTGTTCACAATGAC 57.065 32.000 9.93 0.00 45.72 3.06
684 685 9.628746 CATACAAAATCTGATTGTTCACAATGA 57.371 29.630 9.93 0.75 45.72 2.57
685 686 8.377681 GCATACAAAATCTGATTGTTCACAATG 58.622 33.333 9.93 2.42 45.72 2.82
751 753 6.773685 CCCTCCGTCCCATAACAATATAAAAA 59.226 38.462 0.00 0.00 0.00 1.94
752 754 6.101442 TCCCTCCGTCCCATAACAATATAAAA 59.899 38.462 0.00 0.00 0.00 1.52
753 755 5.607592 TCCCTCCGTCCCATAACAATATAAA 59.392 40.000 0.00 0.00 0.00 1.40
754 756 5.156649 TCCCTCCGTCCCATAACAATATAA 58.843 41.667 0.00 0.00 0.00 0.98
755 757 4.754311 TCCCTCCGTCCCATAACAATATA 58.246 43.478 0.00 0.00 0.00 0.86
756 758 3.583086 CTCCCTCCGTCCCATAACAATAT 59.417 47.826 0.00 0.00 0.00 1.28
757 759 2.969950 CTCCCTCCGTCCCATAACAATA 59.030 50.000 0.00 0.00 0.00 1.90
758 760 1.768870 CTCCCTCCGTCCCATAACAAT 59.231 52.381 0.00 0.00 0.00 2.71
759 761 1.200519 CTCCCTCCGTCCCATAACAA 58.799 55.000 0.00 0.00 0.00 2.83
760 762 0.042131 ACTCCCTCCGTCCCATAACA 59.958 55.000 0.00 0.00 0.00 2.41
761 763 2.077687 TACTCCCTCCGTCCCATAAC 57.922 55.000 0.00 0.00 0.00 1.89
765 767 0.337082 TGATTACTCCCTCCGTCCCA 59.663 55.000 0.00 0.00 0.00 4.37
771 773 3.260884 TGACACAACTGATTACTCCCTCC 59.739 47.826 0.00 0.00 0.00 4.30
788 790 0.529773 TTGTCTGGTGCTCGTGACAC 60.530 55.000 10.54 0.00 38.87 3.67
801 803 6.396829 AGAACTTTCTTCCCATTTTGTCTG 57.603 37.500 0.00 0.00 32.55 3.51
802 804 7.998964 TCTAAGAACTTTCTTCCCATTTTGTCT 59.001 33.333 7.50 0.00 43.72 3.41
803 805 8.166422 TCTAAGAACTTTCTTCCCATTTTGTC 57.834 34.615 7.50 0.00 43.72 3.18
813 815 6.256912 TCGGAGTCTCTAAGAACTTTCTTC 57.743 41.667 7.50 0.00 43.72 2.87
820 822 2.691011 AGGCATCGGAGTCTCTAAGAAC 59.309 50.000 0.00 0.00 0.00 3.01
823 825 2.028130 ACAGGCATCGGAGTCTCTAAG 58.972 52.381 0.00 0.00 0.00 2.18
826 828 2.373335 ATACAGGCATCGGAGTCTCT 57.627 50.000 0.00 0.00 0.00 3.10
841 843 2.159099 GGTGATCTGACAGCCGAATACA 60.159 50.000 0.00 0.00 32.97 2.29
853 855 1.489481 AATCGAGCCAGGTGATCTGA 58.511 50.000 0.00 0.00 46.18 3.27
856 858 2.315925 TCAAATCGAGCCAGGTGATC 57.684 50.000 0.00 0.00 0.00 2.92
863 865 3.191162 CCATGAAGTTTCAAATCGAGCCA 59.809 43.478 0.00 0.00 41.13 4.75
1054 2251 0.460722 GGCCTCCCGAAGAAGTAGTC 59.539 60.000 0.00 0.00 0.00 2.59
1060 2257 2.998097 CCATGGCCTCCCGAAGAA 59.002 61.111 3.32 0.00 0.00 2.52
1072 2269 1.889105 CGTTGAGATCGGGCCATGG 60.889 63.158 7.63 7.63 0.00 3.66
1080 2277 2.223386 GGAGAGTCCTTCGTTGAGATCG 60.223 54.545 0.00 0.00 32.53 3.69
1125 2322 3.787001 GGAAGGGGAGGCTGACCG 61.787 72.222 0.00 0.00 42.76 4.79
1140 2337 0.032615 GAAGAGAGCTGGGGAGAGGA 60.033 60.000 0.00 0.00 0.00 3.71
1167 2364 0.690762 AGAGAGCTACCCCGCAAAAA 59.309 50.000 0.00 0.00 0.00 1.94
1168 2365 0.690762 AAGAGAGCTACCCCGCAAAA 59.309 50.000 0.00 0.00 0.00 2.44
1169 2366 0.249398 GAAGAGAGCTACCCCGCAAA 59.751 55.000 0.00 0.00 0.00 3.68
1170 2367 1.614241 GGAAGAGAGCTACCCCGCAA 61.614 60.000 0.00 0.00 0.00 4.85
1171 2368 2.058595 GGAAGAGAGCTACCCCGCA 61.059 63.158 0.00 0.00 0.00 5.69
1172 2369 1.758906 AGGAAGAGAGCTACCCCGC 60.759 63.158 0.00 0.00 0.00 6.13
1173 2370 0.684805 ACAGGAAGAGAGCTACCCCG 60.685 60.000 0.00 0.00 0.00 5.73
1174 2371 1.574263 AACAGGAAGAGAGCTACCCC 58.426 55.000 0.00 0.00 0.00 4.95
1175 2372 3.339141 CAAAACAGGAAGAGAGCTACCC 58.661 50.000 0.00 0.00 0.00 3.69
1176 2373 2.744741 GCAAAACAGGAAGAGAGCTACC 59.255 50.000 0.00 0.00 0.00 3.18
1177 2374 3.669536 AGCAAAACAGGAAGAGAGCTAC 58.330 45.455 0.00 0.00 0.00 3.58
1178 2375 4.357918 AAGCAAAACAGGAAGAGAGCTA 57.642 40.909 0.00 0.00 0.00 3.32
1179 2376 2.947127 AGCAAAACAGGAAGAGAGCT 57.053 45.000 0.00 0.00 0.00 4.09
1180 2377 3.998099 AAAGCAAAACAGGAAGAGAGC 57.002 42.857 0.00 0.00 0.00 4.09
1181 2378 5.505173 TCAAAAGCAAAACAGGAAGAGAG 57.495 39.130 0.00 0.00 0.00 3.20
1182 2379 5.418840 AGTTCAAAAGCAAAACAGGAAGAGA 59.581 36.000 0.00 0.00 0.00 3.10
1183 2380 5.654497 AGTTCAAAAGCAAAACAGGAAGAG 58.346 37.500 0.00 0.00 0.00 2.85
1184 2381 5.659440 AGTTCAAAAGCAAAACAGGAAGA 57.341 34.783 0.00 0.00 0.00 2.87
1251 2448 3.119101 TCGGAGTAGAAGTTGATCAAGGC 60.119 47.826 8.80 0.00 0.00 4.35
1334 2531 0.827368 AGAAGGAAGCCACGGAGATC 59.173 55.000 0.00 0.00 0.00 2.75
1347 2544 7.066781 AGAAACCAAATACAAAAGGAGAAGGA 58.933 34.615 0.00 0.00 0.00 3.36
1391 2588 2.327568 CACAATCAAATCAACACGGCC 58.672 47.619 0.00 0.00 0.00 6.13
1481 2678 7.651704 ACACAAAAACAGCATGACTAATTAACC 59.348 33.333 0.00 0.00 39.69 2.85
1521 2739 5.640357 ACTGATTGCAAAATTAACAGCATGG 59.360 36.000 1.71 0.00 43.62 3.66
1564 2782 4.442706 TCATAAGCCTAACAGCTAGCAAC 58.557 43.478 18.83 0.00 44.11 4.17
1607 2825 2.512705 AGCTCAAAAGGGCAAAGAGAG 58.487 47.619 0.00 0.00 0.00 3.20
1659 2877 6.069994 AGGGAGTACTAATTAGCTACAGGAC 58.930 44.000 12.54 0.00 0.00 3.85
1680 2898 4.634443 CCAAAATAAGTGTCTTACGGAGGG 59.366 45.833 0.00 0.00 0.00 4.30
1682 2900 5.350640 GTCCCAAAATAAGTGTCTTACGGAG 59.649 44.000 0.00 0.00 0.00 4.63
1683 2901 5.240121 GTCCCAAAATAAGTGTCTTACGGA 58.760 41.667 0.00 0.00 0.00 4.69
1684 2902 4.092383 CGTCCCAAAATAAGTGTCTTACGG 59.908 45.833 0.00 0.00 0.00 4.02
1685 2903 4.092383 CCGTCCCAAAATAAGTGTCTTACG 59.908 45.833 0.00 0.00 0.00 3.18
1686 2904 5.240121 TCCGTCCCAAAATAAGTGTCTTAC 58.760 41.667 0.00 0.00 0.00 2.34
1687 2905 5.484715 CTCCGTCCCAAAATAAGTGTCTTA 58.515 41.667 0.00 0.00 0.00 2.10
1688 2906 4.324267 CTCCGTCCCAAAATAAGTGTCTT 58.676 43.478 0.00 0.00 0.00 3.01
1689 2907 3.307480 CCTCCGTCCCAAAATAAGTGTCT 60.307 47.826 0.00 0.00 0.00 3.41
1690 2908 3.007635 CCTCCGTCCCAAAATAAGTGTC 58.992 50.000 0.00 0.00 0.00 3.67
1691 2909 2.290705 CCCTCCGTCCCAAAATAAGTGT 60.291 50.000 0.00 0.00 0.00 3.55
1692 2910 2.026636 TCCCTCCGTCCCAAAATAAGTG 60.027 50.000 0.00 0.00 0.00 3.16
1693 2911 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
1694 2912 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
1695 2913 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
1696 2914 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
1697 2915 1.838077 CTACTCCCTCCGTCCCAAAAT 59.162 52.381 0.00 0.00 0.00 1.82
1698 2916 1.272807 CTACTCCCTCCGTCCCAAAA 58.727 55.000 0.00 0.00 0.00 2.44
1699 2917 0.115745 ACTACTCCCTCCGTCCCAAA 59.884 55.000 0.00 0.00 0.00 3.28
1700 2918 1.002069 TACTACTCCCTCCGTCCCAA 58.998 55.000 0.00 0.00 0.00 4.12
1701 2919 1.133575 CATACTACTCCCTCCGTCCCA 60.134 57.143 0.00 0.00 0.00 4.37
1702 2920 1.133544 ACATACTACTCCCTCCGTCCC 60.134 57.143 0.00 0.00 0.00 4.46
1703 2921 2.361643 ACATACTACTCCCTCCGTCC 57.638 55.000 0.00 0.00 0.00 4.79
1704 2922 3.952967 AGAAACATACTACTCCCTCCGTC 59.047 47.826 0.00 0.00 0.00 4.79
1705 2923 3.700038 CAGAAACATACTACTCCCTCCGT 59.300 47.826 0.00 0.00 0.00 4.69
1706 2924 3.491104 GCAGAAACATACTACTCCCTCCG 60.491 52.174 0.00 0.00 0.00 4.63
1707 2925 3.451178 TGCAGAAACATACTACTCCCTCC 59.549 47.826 0.00 0.00 0.00 4.30
1708 2926 4.737855 TGCAGAAACATACTACTCCCTC 57.262 45.455 0.00 0.00 0.00 4.30
1709 2927 5.045578 ACAATGCAGAAACATACTACTCCCT 60.046 40.000 0.00 0.00 0.00 4.20
1710 2928 5.186198 ACAATGCAGAAACATACTACTCCC 58.814 41.667 0.00 0.00 0.00 4.30
1711 2929 7.549488 ACTTACAATGCAGAAACATACTACTCC 59.451 37.037 0.00 0.00 0.00 3.85
1712 2930 8.480643 ACTTACAATGCAGAAACATACTACTC 57.519 34.615 0.00 0.00 0.00 2.59
1713 2931 8.094548 TGACTTACAATGCAGAAACATACTACT 58.905 33.333 0.00 0.00 0.00 2.57
1714 2932 8.169268 GTGACTTACAATGCAGAAACATACTAC 58.831 37.037 0.00 0.00 0.00 2.73
1870 4410 8.036273 TGAAGGAAAATAAGAACGATAACACC 57.964 34.615 0.00 0.00 0.00 4.16
1879 4419 7.817641 AGGAAACGATGAAGGAAAATAAGAAC 58.182 34.615 0.00 0.00 0.00 3.01
1908 4448 5.397326 AGTTTCGAAAGGTAGCTACTAACG 58.603 41.667 22.74 20.36 0.00 3.18
1966 4506 6.740401 GCGATGATATACCAACTTAGAACCCA 60.740 42.308 0.00 0.00 0.00 4.51
2199 4743 7.466746 ACCATAGCAATAACAGACAAACATT 57.533 32.000 0.00 0.00 0.00 2.71
2567 5113 1.117994 TCACATCTGCTAGGCCTCAG 58.882 55.000 9.68 12.51 0.00 3.35
2615 5161 8.894768 ACAGCAAATATGTATTTCTCCTAGAC 57.105 34.615 0.00 0.00 33.88 2.59
2737 5283 4.048504 AGCGGTAACAAACATTTTTCTGC 58.951 39.130 0.00 0.00 0.00 4.26
2940 5489 6.489022 ACTGGTGTGCTAACGATACTGATATA 59.511 38.462 0.00 0.00 0.00 0.86
2941 5490 5.302059 ACTGGTGTGCTAACGATACTGATAT 59.698 40.000 0.00 0.00 0.00 1.63
3143 5698 1.210722 TGCAAGAATGGCCGGTACATA 59.789 47.619 13.07 0.00 29.78 2.29
3144 5699 0.034574 TGCAAGAATGGCCGGTACAT 60.035 50.000 1.90 5.54 29.78 2.29
3150 5705 0.033228 TTGGTTTGCAAGAATGGCCG 59.967 50.000 0.00 0.00 29.78 6.13
3238 5972 0.539051 CCTCTGCAACTCCAGGGTAG 59.461 60.000 0.00 0.00 31.19 3.18
3518 6252 3.540314 AAACAAATGCAGCCAACTTGA 57.460 38.095 0.00 0.00 0.00 3.02
3622 6356 5.221880 TGCAGCTTTAACTAGCAACATTTG 58.778 37.500 2.15 0.00 43.68 2.32
3687 6622 5.171476 CGGTACTCCTTGGCATATTAGATG 58.829 45.833 0.00 0.00 0.00 2.90
3751 6686 8.988064 TTTGATTTGTTAGCTTGTTTGTTACA 57.012 26.923 0.00 0.00 34.12 2.41
3841 6778 0.318441 CGCTTCTGGAACTGGAGACA 59.682 55.000 0.00 0.00 34.53 3.41
3937 6909 3.866883 AAAAACATAAGGCCATGTCCG 57.133 42.857 5.01 0.00 38.19 4.79
4023 6995 3.058450 CCAGCGTTTGATTTTGATGCAA 58.942 40.909 0.00 0.00 0.00 4.08
4123 7095 9.809096 ATCATAATCTAAGCCTTATACACATCG 57.191 33.333 0.00 0.00 0.00 3.84
4292 7264 4.093556 GGAAGAGCTCAAGTAAAATCGTGG 59.906 45.833 17.77 0.00 0.00 4.94
4371 7349 8.765488 TTTAATGAAAATAGGATCTGCCATGA 57.235 30.769 0.00 0.00 40.02 3.07
4474 7453 5.181622 CCGTACTAGTAGATTCCAGGTCATC 59.818 48.000 1.87 0.00 0.00 2.92
5322 8312 1.295423 CCACTTACCCCCACAGACG 59.705 63.158 0.00 0.00 0.00 4.18
5323 8313 1.002502 GCCACTTACCCCCACAGAC 60.003 63.158 0.00 0.00 0.00 3.51
5362 8352 4.017126 ACCATGTCTTCGTGTAGATCTGA 58.983 43.478 5.18 0.00 0.00 3.27
5635 8637 2.749621 CCAACCAGATCACCTAAAGTGC 59.250 50.000 0.00 0.00 46.81 4.40
5653 8655 0.746204 TGCACAGTTCGTTCTGCCAA 60.746 50.000 8.87 0.00 38.84 4.52
5668 8670 7.591006 AGATGATCAAACATTTCAATTGCAC 57.409 32.000 0.00 0.00 0.00 4.57
5755 8757 1.268539 CGTTTGTTGCTCAGTGAACCC 60.269 52.381 0.00 0.00 0.00 4.11
5778 8780 1.526887 CACACGTGGTGTTCAGTCATC 59.473 52.381 21.57 0.00 45.08 2.92
5793 8795 4.577834 AAATGTAAGGGGAAAACACACG 57.422 40.909 0.00 0.00 0.00 4.49
5800 8802 5.012561 CCATCCACAAAAATGTAAGGGGAAA 59.987 40.000 0.00 0.00 0.00 3.13
5803 8805 3.369366 GCCATCCACAAAAATGTAAGGGG 60.369 47.826 0.00 0.00 0.00 4.79
5821 8824 1.822990 CTTCACCATCTGCAAAGCCAT 59.177 47.619 0.00 0.00 0.00 4.40
5836 8839 2.911484 CAGAGGGGCAGTTATCTTCAC 58.089 52.381 0.00 0.00 0.00 3.18
5847 8850 3.170672 ATATGCGGCAGAGGGGCA 61.171 61.111 9.25 0.00 43.60 5.36
5993 8997 2.641321 TCCAATAGCCTCCATCTCCATG 59.359 50.000 0.00 0.00 0.00 3.66
5994 8998 2.641815 GTCCAATAGCCTCCATCTCCAT 59.358 50.000 0.00 0.00 0.00 3.41
6026 9030 7.450074 TGTAAGACACTCAAAACCTCATATGT 58.550 34.615 1.90 0.00 0.00 2.29
6037 9041 5.359860 TCTGACACTCTGTAAGACACTCAAA 59.640 40.000 0.00 0.00 38.67 2.69
6144 9150 5.831103 ACATAAATGTTCCTCATGGTTCCT 58.169 37.500 0.00 0.00 37.90 3.36
6164 9170 7.616150 ACTCTGTTCTACCATCTACTGTAACAT 59.384 37.037 0.00 0.00 0.00 2.71
6170 9177 8.057536 AGTTTACTCTGTTCTACCATCTACTG 57.942 38.462 0.00 0.00 0.00 2.74
6172 9179 9.708092 AAAAGTTTACTCTGTTCTACCATCTAC 57.292 33.333 0.00 0.00 0.00 2.59
6237 9244 3.006859 ACACAGCAGCAGTTAGTACATCA 59.993 43.478 0.00 0.00 0.00 3.07
6254 9261 1.075542 ACACGAACACACACACACAG 58.924 50.000 0.00 0.00 0.00 3.66
6407 9581 5.746245 TCAAACTTGGTTCATACGCAAAAAG 59.254 36.000 0.00 0.00 0.00 2.27
6470 9645 9.745018 TCTAGTTTCAGGAATCAAATCTGAATT 57.255 29.630 5.93 1.98 44.00 2.17
6525 9701 5.758296 GCCGTATAAAGATTCATGTTCAGGA 59.242 40.000 0.00 0.00 0.00 3.86
6542 9718 1.687660 TGCTGGTAAATCCGCCGTATA 59.312 47.619 0.00 0.00 39.52 1.47
6561 9737 1.796355 CGTCACTCCGTGTACGCTG 60.796 63.158 4.67 0.00 38.18 5.18
6627 9806 1.339247 TGGTGTCCTGTGTTTCGTGTT 60.339 47.619 0.00 0.00 0.00 3.32
6689 9874 1.743772 CGAGCCTTCCATTGGTGTAGG 60.744 57.143 1.86 9.29 0.00 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.