Multiple sequence alignment - TraesCS4A01G107000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G107000 chr4A 100.000 1663 0 0 1 1663 122628489 122626827 0.000000e+00 3072
1 TraesCS4A01G107000 chr4A 80.884 701 74 30 768 1446 122736413 122735751 4.340000e-137 497
2 TraesCS4A01G107000 chr4A 100.000 247 0 0 2018 2264 122626472 122626226 7.370000e-125 457
3 TraesCS4A01G107000 chr4D 90.929 893 59 11 708 1592 343088604 343089482 0.000000e+00 1181
4 TraesCS4A01G107000 chr4D 81.961 571 49 23 801 1347 343061262 343061802 3.450000e-118 435
5 TraesCS4A01G107000 chr4D 95.699 186 7 1 2079 2264 343091568 343091752 4.730000e-77 298
6 TraesCS4A01G107000 chr4D 89.238 223 23 1 3 225 26896003 26895782 6.160000e-71 278
7 TraesCS4A01G107000 chr4D 91.579 95 8 0 229 323 343088520 343088614 5.070000e-27 132
8 TraesCS4A01G107000 chr4B 80.199 702 76 29 768 1446 424861944 424862605 3.400000e-128 468
9 TraesCS4A01G107000 chr2A 90.090 222 22 0 4 225 362446121 362445900 2.850000e-74 289
10 TraesCS4A01G107000 chr7D 89.640 222 22 1 4 225 31062067 31061847 4.760000e-72 281
11 TraesCS4A01G107000 chr1B 89.640 222 22 1 4 225 520524957 520524737 4.760000e-72 281
12 TraesCS4A01G107000 chr5A 88.987 227 24 1 1 226 649599097 649598871 1.710000e-71 279
13 TraesCS4A01G107000 chr2D 89.545 220 22 1 6 225 361384283 361384501 6.160000e-71 278
14 TraesCS4A01G107000 chr7A 89.189 222 23 1 4 225 631367434 631367654 2.220000e-70 276
15 TraesCS4A01G107000 chr1D 89.189 222 23 1 4 225 27881664 27881884 2.220000e-70 276
16 TraesCS4A01G107000 chr3D 88.596 228 22 4 1 226 470684379 470684604 7.970000e-70 274


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G107000 chr4A 122626226 122628489 2263 True 1764.5 3072 100.000000 1 2264 2 chr4A.!!$R2 2263
1 TraesCS4A01G107000 chr4A 122735751 122736413 662 True 497.0 497 80.884000 768 1446 1 chr4A.!!$R1 678
2 TraesCS4A01G107000 chr4D 343088520 343091752 3232 False 537.0 1181 92.735667 229 2264 3 chr4D.!!$F2 2035
3 TraesCS4A01G107000 chr4D 343061262 343061802 540 False 435.0 435 81.961000 801 1347 1 chr4D.!!$F1 546
4 TraesCS4A01G107000 chr4B 424861944 424862605 661 False 468.0 468 80.199000 768 1446 1 chr4B.!!$F1 678

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
149 150 0.031178 AACTTTTGCTTCTGCCGCAG 59.969 50.0 14.62 14.62 38.8 5.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1593 0.61585 AAGGCCTTCTTTCCTCTCGG 59.384 55.0 13.78 0.0 29.99 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
56 57 9.850628 GGTCTAACTTCAACCATAAATTTAACC 57.149 33.333 1.21 0.00 33.11 2.85
60 61 8.582433 AACTTCAACCATAAATTTAACCAACG 57.418 30.769 1.21 0.00 0.00 4.10
61 62 7.942990 ACTTCAACCATAAATTTAACCAACGA 58.057 30.769 1.21 0.00 0.00 3.85
62 63 8.079809 ACTTCAACCATAAATTTAACCAACGAG 58.920 33.333 1.21 0.01 0.00 4.18
63 64 7.747155 TCAACCATAAATTTAACCAACGAGA 57.253 32.000 1.21 0.00 0.00 4.04
64 65 7.586747 TCAACCATAAATTTAACCAACGAGAC 58.413 34.615 1.21 0.00 0.00 3.36
65 66 6.505044 ACCATAAATTTAACCAACGAGACC 57.495 37.500 1.21 0.00 0.00 3.85
66 67 5.122711 ACCATAAATTTAACCAACGAGACCG 59.877 40.000 1.21 0.00 42.50 4.79
67 68 5.352016 CCATAAATTTAACCAACGAGACCGA 59.648 40.000 1.21 0.00 39.50 4.69
68 69 4.737353 AAATTTAACCAACGAGACCGAC 57.263 40.909 0.00 0.00 39.50 4.79
69 70 3.672767 ATTTAACCAACGAGACCGACT 57.327 42.857 0.00 0.00 39.50 4.18
70 71 2.427232 TTAACCAACGAGACCGACTG 57.573 50.000 0.00 0.00 39.50 3.51
71 72 0.038892 TAACCAACGAGACCGACTGC 60.039 55.000 0.00 0.00 39.50 4.40
72 73 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
82 83 2.342279 CGACTGCGGTGGGAGAAA 59.658 61.111 0.80 0.00 35.29 2.52
83 84 1.301401 CGACTGCGGTGGGAGAAAA 60.301 57.895 0.80 0.00 35.29 2.29
84 85 0.882927 CGACTGCGGTGGGAGAAAAA 60.883 55.000 0.80 0.00 35.29 1.94
134 135 8.942338 TGAATACGAATTCACTGCTATAACTT 57.058 30.769 6.22 0.00 45.17 2.66
135 136 9.378551 TGAATACGAATTCACTGCTATAACTTT 57.621 29.630 6.22 0.00 45.17 2.66
137 138 9.988350 AATACGAATTCACTGCTATAACTTTTG 57.012 29.630 6.22 0.00 0.00 2.44
138 139 6.314784 ACGAATTCACTGCTATAACTTTTGC 58.685 36.000 6.22 0.00 0.00 3.68
139 140 6.149474 ACGAATTCACTGCTATAACTTTTGCT 59.851 34.615 6.22 0.00 0.00 3.91
140 141 7.023575 CGAATTCACTGCTATAACTTTTGCTT 58.976 34.615 6.22 0.00 0.00 3.91
141 142 7.217070 CGAATTCACTGCTATAACTTTTGCTTC 59.783 37.037 6.22 0.00 0.00 3.86
142 143 7.693969 ATTCACTGCTATAACTTTTGCTTCT 57.306 32.000 0.00 0.00 0.00 2.85
143 144 6.486253 TCACTGCTATAACTTTTGCTTCTG 57.514 37.500 0.00 0.00 0.00 3.02
144 145 5.091431 CACTGCTATAACTTTTGCTTCTGC 58.909 41.667 0.00 0.00 40.20 4.26
145 146 4.156739 ACTGCTATAACTTTTGCTTCTGCC 59.843 41.667 0.00 0.00 38.71 4.85
146 147 3.126858 TGCTATAACTTTTGCTTCTGCCG 59.873 43.478 0.00 0.00 38.71 5.69
147 148 2.636768 ATAACTTTTGCTTCTGCCGC 57.363 45.000 0.00 0.00 38.71 6.53
148 149 1.313772 TAACTTTTGCTTCTGCCGCA 58.686 45.000 0.00 0.00 38.71 5.69
149 150 0.031178 AACTTTTGCTTCTGCCGCAG 59.969 50.000 14.62 14.62 38.80 5.18
150 151 1.103398 ACTTTTGCTTCTGCCGCAGT 61.103 50.000 19.77 0.00 38.80 4.40
151 152 0.386478 CTTTTGCTTCTGCCGCAGTC 60.386 55.000 19.77 10.83 38.80 3.51
152 153 2.116736 TTTTGCTTCTGCCGCAGTCG 62.117 55.000 19.77 12.68 38.80 4.18
162 163 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
163 164 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
164 165 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
165 166 1.557443 GCAGTCGGTCTCGTTGGTTG 61.557 60.000 0.00 0.00 37.69 3.77
166 167 0.031585 CAGTCGGTCTCGTTGGTTGA 59.968 55.000 0.00 0.00 37.69 3.18
167 168 0.748450 AGTCGGTCTCGTTGGTTGAA 59.252 50.000 0.00 0.00 37.69 2.69
168 169 1.343465 AGTCGGTCTCGTTGGTTGAAT 59.657 47.619 0.00 0.00 37.69 2.57
169 170 2.140717 GTCGGTCTCGTTGGTTGAATT 58.859 47.619 0.00 0.00 37.69 2.17
170 171 2.546789 GTCGGTCTCGTTGGTTGAATTT 59.453 45.455 0.00 0.00 37.69 1.82
171 172 3.742369 GTCGGTCTCGTTGGTTGAATTTA 59.258 43.478 0.00 0.00 37.69 1.40
172 173 4.211794 GTCGGTCTCGTTGGTTGAATTTAA 59.788 41.667 0.00 0.00 37.69 1.52
173 174 4.449743 TCGGTCTCGTTGGTTGAATTTAAG 59.550 41.667 0.00 0.00 37.69 1.85
174 175 4.378046 CGGTCTCGTTGGTTGAATTTAAGG 60.378 45.833 0.00 0.00 0.00 2.69
175 176 4.517832 GGTCTCGTTGGTTGAATTTAAGGT 59.482 41.667 0.00 0.00 0.00 3.50
176 177 5.334646 GGTCTCGTTGGTTGAATTTAAGGTC 60.335 44.000 0.00 0.00 0.00 3.85
177 178 5.237779 GTCTCGTTGGTTGAATTTAAGGTCA 59.762 40.000 0.00 0.00 0.00 4.02
178 179 5.823570 TCTCGTTGGTTGAATTTAAGGTCAA 59.176 36.000 0.14 0.14 0.00 3.18
179 180 6.319152 TCTCGTTGGTTGAATTTAAGGTCAAA 59.681 34.615 4.89 0.00 35.60 2.69
180 181 6.500041 TCGTTGGTTGAATTTAAGGTCAAAG 58.500 36.000 4.89 0.00 35.60 2.77
181 182 6.095720 TCGTTGGTTGAATTTAAGGTCAAAGT 59.904 34.615 4.89 0.00 35.60 2.66
182 183 6.754675 CGTTGGTTGAATTTAAGGTCAAAGTT 59.245 34.615 4.89 0.00 35.60 2.66
183 184 7.916450 CGTTGGTTGAATTTAAGGTCAAAGTTA 59.084 33.333 4.89 0.00 35.60 2.24
184 185 9.589111 GTTGGTTGAATTTAAGGTCAAAGTTAA 57.411 29.630 4.89 0.00 35.60 2.01
186 187 9.810545 TGGTTGAATTTAAGGTCAAAGTTAAAG 57.189 29.630 4.89 0.00 35.60 1.85
187 188 8.761497 GGTTGAATTTAAGGTCAAAGTTAAAGC 58.239 33.333 4.89 0.00 35.60 3.51
188 189 9.308318 GTTGAATTTAAGGTCAAAGTTAAAGCA 57.692 29.630 4.89 0.00 35.60 3.91
189 190 8.865590 TGAATTTAAGGTCAAAGTTAAAGCAC 57.134 30.769 0.00 0.00 32.95 4.40
190 191 8.470805 TGAATTTAAGGTCAAAGTTAAAGCACA 58.529 29.630 0.00 0.00 32.95 4.57
191 192 9.308318 GAATTTAAGGTCAAAGTTAAAGCACAA 57.692 29.630 0.00 0.00 32.95 3.33
192 193 9.660180 AATTTAAGGTCAAAGTTAAAGCACAAA 57.340 25.926 0.00 0.00 32.95 2.83
193 194 9.660180 ATTTAAGGTCAAAGTTAAAGCACAAAA 57.340 25.926 0.00 0.00 32.95 2.44
194 195 9.490379 TTTAAGGTCAAAGTTAAAGCACAAAAA 57.510 25.926 0.00 0.00 0.00 1.94
195 196 9.660180 TTAAGGTCAAAGTTAAAGCACAAAAAT 57.340 25.926 0.00 0.00 0.00 1.82
197 198 8.871686 AGGTCAAAGTTAAAGCACAAAAATAG 57.128 30.769 0.00 0.00 0.00 1.73
198 199 8.691797 AGGTCAAAGTTAAAGCACAAAAATAGA 58.308 29.630 0.00 0.00 0.00 1.98
199 200 9.476202 GGTCAAAGTTAAAGCACAAAAATAGAT 57.524 29.630 0.00 0.00 0.00 1.98
204 205 8.748380 AGTTAAAGCACAAAAATAGATGAAGC 57.252 30.769 0.00 0.00 0.00 3.86
205 206 8.359642 AGTTAAAGCACAAAAATAGATGAAGCA 58.640 29.630 0.00 0.00 0.00 3.91
206 207 8.427774 GTTAAAGCACAAAAATAGATGAAGCAC 58.572 33.333 0.00 0.00 0.00 4.40
207 208 5.972107 AGCACAAAAATAGATGAAGCACT 57.028 34.783 0.00 0.00 0.00 4.40
208 209 7.452880 AAGCACAAAAATAGATGAAGCACTA 57.547 32.000 0.00 0.00 0.00 2.74
209 210 7.636150 AGCACAAAAATAGATGAAGCACTAT 57.364 32.000 0.00 0.00 0.00 2.12
210 211 8.737168 AGCACAAAAATAGATGAAGCACTATA 57.263 30.769 0.00 0.00 0.00 1.31
211 212 9.347240 AGCACAAAAATAGATGAAGCACTATAT 57.653 29.630 0.00 0.00 0.00 0.86
212 213 9.956720 GCACAAAAATAGATGAAGCACTATATT 57.043 29.630 0.00 0.00 0.00 1.28
221 222 7.697691 AGATGAAGCACTATATTTTGAAACGG 58.302 34.615 0.00 0.00 0.00 4.44
222 223 7.552687 AGATGAAGCACTATATTTTGAAACGGA 59.447 33.333 0.00 0.00 0.00 4.69
223 224 7.072177 TGAAGCACTATATTTTGAAACGGAG 57.928 36.000 0.00 0.00 0.00 4.63
224 225 6.093495 TGAAGCACTATATTTTGAAACGGAGG 59.907 38.462 0.00 0.00 0.00 4.30
225 226 5.741011 AGCACTATATTTTGAAACGGAGGA 58.259 37.500 0.00 0.00 0.00 3.71
226 227 5.585047 AGCACTATATTTTGAAACGGAGGAC 59.415 40.000 0.00 0.00 0.00 3.85
227 228 5.353123 GCACTATATTTTGAAACGGAGGACA 59.647 40.000 0.00 0.00 0.00 4.02
228 229 6.038271 GCACTATATTTTGAAACGGAGGACAT 59.962 38.462 0.00 0.00 0.00 3.06
229 230 7.225931 GCACTATATTTTGAAACGGAGGACATA 59.774 37.037 0.00 0.00 0.00 2.29
230 231 8.548721 CACTATATTTTGAAACGGAGGACATAC 58.451 37.037 0.00 0.00 0.00 2.39
231 232 8.262227 ACTATATTTTGAAACGGAGGACATACA 58.738 33.333 0.00 0.00 0.00 2.29
232 233 5.880054 ATTTTGAAACGGAGGACATACAG 57.120 39.130 0.00 0.00 0.00 2.74
233 234 4.345859 TTTGAAACGGAGGACATACAGT 57.654 40.909 0.00 0.00 0.00 3.55
234 235 5.471556 TTTGAAACGGAGGACATACAGTA 57.528 39.130 0.00 0.00 0.00 2.74
235 236 5.670792 TTGAAACGGAGGACATACAGTAT 57.329 39.130 0.00 0.00 0.00 2.12
236 237 6.778834 TTGAAACGGAGGACATACAGTATA 57.221 37.500 0.00 0.00 0.00 1.47
237 238 6.387041 TGAAACGGAGGACATACAGTATAG 57.613 41.667 0.00 0.00 0.00 1.31
238 239 6.124340 TGAAACGGAGGACATACAGTATAGA 58.876 40.000 0.00 0.00 0.00 1.98
249 250 7.418597 GGACATACAGTATAGAACCATTCACCA 60.419 40.741 0.00 0.00 0.00 4.17
252 253 9.996554 CATACAGTATAGAACCATTCACCAATA 57.003 33.333 0.00 0.00 0.00 1.90
275 276 3.638627 TGGTTACCAACATGCATTTCACA 59.361 39.130 0.00 0.00 0.00 3.58
287 288 2.665519 GCATTTCACACACACCATCGAC 60.666 50.000 0.00 0.00 0.00 4.20
293 294 1.140052 ACACACACCATCGACAGGAAA 59.860 47.619 12.36 0.00 0.00 3.13
316 317 1.169661 ACGATTGAGTTTGCCCGCAA 61.170 50.000 0.00 0.00 0.00 4.85
317 318 0.454957 CGATTGAGTTTGCCCGCAAG 60.455 55.000 1.90 0.00 37.24 4.01
318 319 0.881118 GATTGAGTTTGCCCGCAAGA 59.119 50.000 1.90 0.00 43.02 3.02
319 320 0.883833 ATTGAGTTTGCCCGCAAGAG 59.116 50.000 1.90 0.00 43.02 2.85
320 321 0.465460 TTGAGTTTGCCCGCAAGAGT 60.465 50.000 1.90 0.00 43.02 3.24
321 322 0.884704 TGAGTTTGCCCGCAAGAGTC 60.885 55.000 1.90 7.18 43.02 3.36
322 323 1.578206 GAGTTTGCCCGCAAGAGTCC 61.578 60.000 1.90 0.00 43.02 3.85
323 324 1.896660 GTTTGCCCGCAAGAGTCCA 60.897 57.895 1.90 0.00 43.02 4.02
324 325 1.152860 TTTGCCCGCAAGAGTCCAA 60.153 52.632 1.90 0.00 43.02 3.53
325 326 0.753479 TTTGCCCGCAAGAGTCCAAA 60.753 50.000 1.90 0.00 43.02 3.28
326 327 0.753479 TTGCCCGCAAGAGTCCAAAA 60.753 50.000 0.00 0.00 43.02 2.44
327 328 0.753479 TGCCCGCAAGAGTCCAAAAA 60.753 50.000 0.00 0.00 43.02 1.94
328 329 0.039165 GCCCGCAAGAGTCCAAAAAG 60.039 55.000 0.00 0.00 43.02 2.27
329 330 1.318576 CCCGCAAGAGTCCAAAAAGT 58.681 50.000 0.00 0.00 43.02 2.66
330 331 1.001378 CCCGCAAGAGTCCAAAAAGTG 60.001 52.381 0.00 0.00 43.02 3.16
331 332 1.676006 CCGCAAGAGTCCAAAAAGTGT 59.324 47.619 0.00 0.00 43.02 3.55
332 333 2.875933 CCGCAAGAGTCCAAAAAGTGTA 59.124 45.455 0.00 0.00 43.02 2.90
333 334 3.502211 CCGCAAGAGTCCAAAAAGTGTAT 59.498 43.478 0.00 0.00 43.02 2.29
334 335 4.466828 CGCAAGAGTCCAAAAAGTGTATG 58.533 43.478 0.00 0.00 43.02 2.39
335 336 4.213270 CGCAAGAGTCCAAAAAGTGTATGA 59.787 41.667 0.00 0.00 43.02 2.15
336 337 5.277779 CGCAAGAGTCCAAAAAGTGTATGAA 60.278 40.000 0.00 0.00 43.02 2.57
337 338 6.568462 CGCAAGAGTCCAAAAAGTGTATGAAT 60.568 38.462 0.00 0.00 43.02 2.57
338 339 7.360861 CGCAAGAGTCCAAAAAGTGTATGAATA 60.361 37.037 0.00 0.00 43.02 1.75
339 340 8.462016 GCAAGAGTCCAAAAAGTGTATGAATAT 58.538 33.333 0.00 0.00 0.00 1.28
340 341 9.778993 CAAGAGTCCAAAAAGTGTATGAATATG 57.221 33.333 0.00 0.00 0.00 1.78
341 342 8.511604 AGAGTCCAAAAAGTGTATGAATATGG 57.488 34.615 0.00 0.00 0.00 2.74
342 343 7.557719 AGAGTCCAAAAAGTGTATGAATATGGG 59.442 37.037 0.00 0.00 0.00 4.00
343 344 6.096846 AGTCCAAAAAGTGTATGAATATGGGC 59.903 38.462 0.00 0.00 0.00 5.36
344 345 5.954752 TCCAAAAAGTGTATGAATATGGGCA 59.045 36.000 0.00 0.00 0.00 5.36
345 346 6.610830 TCCAAAAAGTGTATGAATATGGGCAT 59.389 34.615 0.00 0.00 0.00 4.40
346 347 7.782168 TCCAAAAAGTGTATGAATATGGGCATA 59.218 33.333 0.00 0.00 0.00 3.14
347 348 8.587608 CCAAAAAGTGTATGAATATGGGCATAT 58.412 33.333 0.00 0.00 35.63 1.78
352 353 9.842775 AAGTGTATGAATATGGGCATATATGAG 57.157 33.333 17.10 0.00 33.86 2.90
353 354 7.935755 AGTGTATGAATATGGGCATATATGAGC 59.064 37.037 17.10 1.55 33.86 4.26
364 365 6.648879 GGCATATATGAGCCCACTTTAAAA 57.351 37.500 17.10 0.00 45.18 1.52
365 366 7.049799 GGCATATATGAGCCCACTTTAAAAA 57.950 36.000 17.10 0.00 45.18 1.94
413 414 4.847255 AAAAAGTCTCGCGCATGC 57.153 50.000 7.91 7.91 37.91 4.06
414 415 1.948508 AAAAAGTCTCGCGCATGCA 59.051 47.368 19.57 0.00 42.97 3.96
415 416 0.310543 AAAAAGTCTCGCGCATGCAA 59.689 45.000 19.57 1.03 42.97 4.08
416 417 0.523072 AAAAGTCTCGCGCATGCAAT 59.477 45.000 19.57 0.00 42.97 3.56
417 418 0.097674 AAAGTCTCGCGCATGCAATC 59.902 50.000 19.57 5.00 42.97 2.67
418 419 0.742281 AAGTCTCGCGCATGCAATCT 60.742 50.000 19.57 3.90 42.97 2.40
419 420 0.742281 AGTCTCGCGCATGCAATCTT 60.742 50.000 19.57 0.00 42.97 2.40
420 421 0.588233 GTCTCGCGCATGCAATCTTG 60.588 55.000 19.57 0.51 42.97 3.02
421 422 0.740516 TCTCGCGCATGCAATCTTGA 60.741 50.000 19.57 4.82 42.97 3.02
422 423 0.588233 CTCGCGCATGCAATCTTGAC 60.588 55.000 19.57 0.00 42.97 3.18
423 424 1.135108 CGCGCATGCAATCTTGACA 59.865 52.632 19.57 0.00 42.97 3.58
424 425 0.248336 CGCGCATGCAATCTTGACAT 60.248 50.000 19.57 0.00 42.97 3.06
425 426 1.796253 CGCGCATGCAATCTTGACATT 60.796 47.619 19.57 0.00 42.97 2.71
426 427 1.850441 GCGCATGCAATCTTGACATTC 59.150 47.619 19.57 0.00 42.15 2.67
427 428 2.479049 GCGCATGCAATCTTGACATTCT 60.479 45.455 19.57 0.00 42.15 2.40
428 429 3.242837 GCGCATGCAATCTTGACATTCTA 60.243 43.478 19.57 0.00 42.15 2.10
429 430 4.556104 GCGCATGCAATCTTGACATTCTAT 60.556 41.667 19.57 0.00 42.15 1.98
430 431 4.909880 CGCATGCAATCTTGACATTCTATG 59.090 41.667 19.57 0.00 0.00 2.23
431 432 5.220381 GCATGCAATCTTGACATTCTATGG 58.780 41.667 14.21 0.00 33.60 2.74
432 433 5.769367 CATGCAATCTTGACATTCTATGGG 58.231 41.667 0.00 0.00 33.60 4.00
433 434 3.633525 TGCAATCTTGACATTCTATGGGC 59.366 43.478 0.00 0.00 33.60 5.36
434 435 3.633525 GCAATCTTGACATTCTATGGGCA 59.366 43.478 0.00 0.00 33.60 5.36
435 436 4.261489 GCAATCTTGACATTCTATGGGCAG 60.261 45.833 0.00 0.00 33.60 4.85
436 437 2.923121 TCTTGACATTCTATGGGCAGC 58.077 47.619 0.00 0.00 33.60 5.25
437 438 2.239402 TCTTGACATTCTATGGGCAGCA 59.761 45.455 0.00 0.00 33.60 4.41
438 439 2.804986 TGACATTCTATGGGCAGCAA 57.195 45.000 0.00 0.00 33.60 3.91
439 440 3.084536 TGACATTCTATGGGCAGCAAA 57.915 42.857 0.00 0.00 33.60 3.68
440 441 3.429492 TGACATTCTATGGGCAGCAAAA 58.571 40.909 0.00 0.00 33.60 2.44
441 442 3.831333 TGACATTCTATGGGCAGCAAAAA 59.169 39.130 0.00 0.00 33.60 1.94
442 443 4.082081 TGACATTCTATGGGCAGCAAAAAG 60.082 41.667 0.00 0.00 33.60 2.27
443 444 3.834231 ACATTCTATGGGCAGCAAAAAGT 59.166 39.130 0.00 0.00 33.60 2.66
444 445 4.284234 ACATTCTATGGGCAGCAAAAAGTT 59.716 37.500 0.00 0.00 33.60 2.66
445 446 4.953940 TTCTATGGGCAGCAAAAAGTTT 57.046 36.364 0.00 0.00 0.00 2.66
446 447 4.519540 TCTATGGGCAGCAAAAAGTTTC 57.480 40.909 0.00 0.00 0.00 2.78
447 448 3.894427 TCTATGGGCAGCAAAAAGTTTCA 59.106 39.130 0.00 0.00 0.00 2.69
448 449 3.775261 ATGGGCAGCAAAAAGTTTCAT 57.225 38.095 0.00 0.00 0.00 2.57
449 450 2.836262 TGGGCAGCAAAAAGTTTCATG 58.164 42.857 0.00 0.00 0.00 3.07
450 451 2.145536 GGGCAGCAAAAAGTTTCATGG 58.854 47.619 0.00 0.00 0.00 3.66
451 452 2.224257 GGGCAGCAAAAAGTTTCATGGA 60.224 45.455 0.00 0.00 0.00 3.41
452 453 3.465871 GGCAGCAAAAAGTTTCATGGAA 58.534 40.909 0.00 0.00 0.00 3.53
453 454 3.876320 GGCAGCAAAAAGTTTCATGGAAA 59.124 39.130 0.00 0.00 0.00 3.13
454 455 4.335037 GGCAGCAAAAAGTTTCATGGAAAA 59.665 37.500 0.00 0.00 33.14 2.29
455 456 5.504392 GCAGCAAAAAGTTTCATGGAAAAG 58.496 37.500 0.00 0.00 33.14 2.27
456 457 5.065090 GCAGCAAAAAGTTTCATGGAAAAGT 59.935 36.000 0.00 0.00 33.14 2.66
457 458 6.257630 GCAGCAAAAAGTTTCATGGAAAAGTA 59.742 34.615 0.00 0.00 33.14 2.24
458 459 7.201600 GCAGCAAAAAGTTTCATGGAAAAGTAA 60.202 33.333 0.00 0.00 33.14 2.24
459 460 8.116136 CAGCAAAAAGTTTCATGGAAAAGTAAC 58.884 33.333 0.00 0.00 33.14 2.50
460 461 8.040727 AGCAAAAAGTTTCATGGAAAAGTAACT 58.959 29.630 0.00 0.00 33.14 2.24
461 462 8.664798 GCAAAAAGTTTCATGGAAAAGTAACTT 58.335 29.630 0.00 0.00 37.07 2.66
470 471 8.940768 TCATGGAAAAGTAACTTTTTCTTTGG 57.059 30.769 14.62 5.79 42.72 3.28
471 472 7.494298 TCATGGAAAAGTAACTTTTTCTTTGGC 59.506 33.333 14.62 2.50 42.72 4.52
472 473 6.941857 TGGAAAAGTAACTTTTTCTTTGGCT 58.058 32.000 14.62 0.00 42.72 4.75
473 474 7.390823 TGGAAAAGTAACTTTTTCTTTGGCTT 58.609 30.769 14.62 0.00 42.72 4.35
474 475 7.333174 TGGAAAAGTAACTTTTTCTTTGGCTTG 59.667 33.333 14.62 0.00 42.72 4.01
475 476 7.333423 GGAAAAGTAACTTTTTCTTTGGCTTGT 59.667 33.333 12.92 0.00 42.72 3.16
476 477 7.595311 AAAGTAACTTTTTCTTTGGCTTGTG 57.405 32.000 0.00 0.00 28.27 3.33
477 478 5.109210 AGTAACTTTTTCTTTGGCTTGTGC 58.891 37.500 0.00 0.00 38.76 4.57
478 479 3.608316 ACTTTTTCTTTGGCTTGTGCA 57.392 38.095 0.00 0.00 41.91 4.57
479 480 3.936564 ACTTTTTCTTTGGCTTGTGCAA 58.063 36.364 0.00 0.00 41.91 4.08
480 481 4.322567 ACTTTTTCTTTGGCTTGTGCAAA 58.677 34.783 0.00 0.00 41.91 3.68
481 482 4.759183 ACTTTTTCTTTGGCTTGTGCAAAA 59.241 33.333 0.00 0.00 39.58 2.44
482 483 5.240403 ACTTTTTCTTTGGCTTGTGCAAAAA 59.760 32.000 0.00 0.00 41.11 1.94
515 516 6.757897 AAAAGTCATGGAATGCGATTTAGA 57.242 33.333 0.00 0.00 46.21 2.10
516 517 6.757897 AAAGTCATGGAATGCGATTTAGAA 57.242 33.333 0.00 0.00 46.21 2.10
517 518 5.998454 AGTCATGGAATGCGATTTAGAAG 57.002 39.130 0.00 0.00 46.21 2.85
518 519 4.274459 AGTCATGGAATGCGATTTAGAAGC 59.726 41.667 0.00 0.00 46.21 3.86
519 520 4.035558 GTCATGGAATGCGATTTAGAAGCA 59.964 41.667 0.00 0.00 46.21 3.91
520 521 4.035558 TCATGGAATGCGATTTAGAAGCAC 59.964 41.667 0.00 0.00 46.21 4.40
521 522 3.609853 TGGAATGCGATTTAGAAGCACT 58.390 40.909 0.00 0.00 44.12 4.40
522 523 3.374988 TGGAATGCGATTTAGAAGCACTG 59.625 43.478 0.00 0.00 44.12 3.66
523 524 3.623060 GGAATGCGATTTAGAAGCACTGA 59.377 43.478 0.00 0.00 44.12 3.41
524 525 4.094887 GGAATGCGATTTAGAAGCACTGAA 59.905 41.667 0.00 0.00 44.12 3.02
525 526 5.220931 GGAATGCGATTTAGAAGCACTGAAT 60.221 40.000 0.00 1.80 44.12 2.57
526 527 5.824904 ATGCGATTTAGAAGCACTGAATT 57.175 34.783 0.00 0.00 44.12 2.17
527 528 5.627499 TGCGATTTAGAAGCACTGAATTT 57.373 34.783 0.00 0.00 35.45 1.82
528 529 6.012658 TGCGATTTAGAAGCACTGAATTTT 57.987 33.333 0.00 0.00 35.45 1.82
529 530 5.858049 TGCGATTTAGAAGCACTGAATTTTG 59.142 36.000 0.00 0.29 35.45 2.44
530 531 5.858581 GCGATTTAGAAGCACTGAATTTTGT 59.141 36.000 0.00 0.00 35.45 2.83
531 532 6.363357 GCGATTTAGAAGCACTGAATTTTGTT 59.637 34.615 0.00 0.00 35.45 2.83
532 533 7.096065 GCGATTTAGAAGCACTGAATTTTGTTT 60.096 33.333 0.00 0.00 35.45 2.83
533 534 8.755018 CGATTTAGAAGCACTGAATTTTGTTTT 58.245 29.630 3.39 0.00 35.45 2.43
584 585 2.920126 CAAAACTTTGTGCCGCGC 59.080 55.556 0.00 0.00 33.59 6.86
585 586 2.653766 AAAACTTTGTGCCGCGCG 60.654 55.556 25.67 25.67 0.00 6.86
594 595 4.889856 TGCCGCGCGCACATATCT 62.890 61.111 32.61 0.00 44.64 1.98
595 596 4.360027 GCCGCGCGCACATATCTG 62.360 66.667 32.61 11.84 37.47 2.90
596 597 2.961721 CCGCGCGCACATATCTGT 60.962 61.111 32.61 0.00 35.44 3.41
612 613 8.186709 ACATATCTGTGATGATGTATGTGAGA 57.813 34.615 0.00 0.00 33.22 3.27
613 614 8.645110 ACATATCTGTGATGATGTATGTGAGAA 58.355 33.333 0.00 0.00 33.22 2.87
614 615 9.485206 CATATCTGTGATGATGTATGTGAGAAA 57.515 33.333 0.00 0.00 0.00 2.52
616 617 7.781548 TCTGTGATGATGTATGTGAGAAATG 57.218 36.000 0.00 0.00 0.00 2.32
617 618 7.333323 TCTGTGATGATGTATGTGAGAAATGT 58.667 34.615 0.00 0.00 0.00 2.71
618 619 7.825761 TCTGTGATGATGTATGTGAGAAATGTT 59.174 33.333 0.00 0.00 0.00 2.71
619 620 8.339344 TGTGATGATGTATGTGAGAAATGTTT 57.661 30.769 0.00 0.00 0.00 2.83
620 621 8.795513 TGTGATGATGTATGTGAGAAATGTTTT 58.204 29.630 0.00 0.00 0.00 2.43
621 622 9.630098 GTGATGATGTATGTGAGAAATGTTTTT 57.370 29.630 0.00 0.00 0.00 1.94
683 684 8.947055 ATATTTTGAAAAGTGGGTTCATATGC 57.053 30.769 0.00 0.00 35.03 3.14
684 685 4.799564 TTGAAAAGTGGGTTCATATGCC 57.200 40.909 0.00 0.00 35.03 4.40
685 686 3.772387 TGAAAAGTGGGTTCATATGCCA 58.228 40.909 0.00 0.00 30.08 4.92
686 687 4.352009 TGAAAAGTGGGTTCATATGCCAT 58.648 39.130 4.14 0.00 30.08 4.40
687 688 4.160065 TGAAAAGTGGGTTCATATGCCATG 59.840 41.667 4.14 0.00 30.08 3.66
688 689 3.386932 AAGTGGGTTCATATGCCATGT 57.613 42.857 4.14 0.00 0.00 3.21
689 690 2.658285 AGTGGGTTCATATGCCATGTG 58.342 47.619 4.14 0.00 0.00 3.21
690 691 2.025037 AGTGGGTTCATATGCCATGTGT 60.025 45.455 1.18 0.00 0.00 3.72
691 692 2.099592 GTGGGTTCATATGCCATGTGTG 59.900 50.000 1.18 0.00 0.00 3.82
692 693 1.067516 GGGTTCATATGCCATGTGTGC 59.932 52.381 1.18 0.00 0.00 4.57
693 694 2.026641 GGTTCATATGCCATGTGTGCT 58.973 47.619 1.18 0.00 0.00 4.40
694 695 2.223641 GGTTCATATGCCATGTGTGCTG 60.224 50.000 1.18 0.00 0.00 4.41
695 696 1.682740 TCATATGCCATGTGTGCTGG 58.317 50.000 1.18 0.00 36.81 4.85
696 697 1.212441 TCATATGCCATGTGTGCTGGA 59.788 47.619 1.18 0.00 35.70 3.86
697 698 1.335810 CATATGCCATGTGTGCTGGAC 59.664 52.381 0.00 0.00 35.70 4.02
698 699 0.744057 TATGCCATGTGTGCTGGACG 60.744 55.000 0.00 0.00 35.70 4.79
699 700 2.669569 GCCATGTGTGCTGGACGT 60.670 61.111 0.00 0.00 35.70 4.34
700 701 1.375396 GCCATGTGTGCTGGACGTA 60.375 57.895 0.00 0.00 35.70 3.57
701 702 1.635663 GCCATGTGTGCTGGACGTAC 61.636 60.000 0.00 0.00 35.70 3.67
702 703 0.037326 CCATGTGTGCTGGACGTACT 60.037 55.000 0.00 0.00 35.70 2.73
703 704 1.350193 CATGTGTGCTGGACGTACTC 58.650 55.000 0.00 0.00 0.00 2.59
704 705 1.067565 CATGTGTGCTGGACGTACTCT 60.068 52.381 0.00 0.00 0.00 3.24
705 706 0.596577 TGTGTGCTGGACGTACTCTC 59.403 55.000 0.00 0.00 0.00 3.20
706 707 0.882474 GTGTGCTGGACGTACTCTCT 59.118 55.000 0.00 0.00 0.00 3.10
707 708 1.135632 GTGTGCTGGACGTACTCTCTC 60.136 57.143 0.00 0.00 0.00 3.20
708 709 0.097325 GTGCTGGACGTACTCTCTCG 59.903 60.000 0.00 0.00 0.00 4.04
709 710 1.062845 GCTGGACGTACTCTCTCGC 59.937 63.158 0.00 0.00 0.00 5.03
710 711 1.645704 GCTGGACGTACTCTCTCGCA 61.646 60.000 0.00 0.00 0.00 5.10
732 733 5.340803 CAAGAGTGCTCGTTATTACTAGCA 58.659 41.667 6.94 6.94 46.94 3.49
743 744 3.629142 ATTACTAGCACACTTGTCCCC 57.371 47.619 0.00 0.00 33.72 4.81
756 758 3.636764 ACTTGTCCCCAAAAAGTTGCTAG 59.363 43.478 0.00 0.00 29.98 3.42
759 761 0.243636 CCCCAAAAAGTTGCTAGGCG 59.756 55.000 0.00 0.00 33.01 5.52
760 762 0.243636 CCCAAAAAGTTGCTAGGCGG 59.756 55.000 0.00 0.00 33.01 6.13
761 763 1.243902 CCAAAAAGTTGCTAGGCGGA 58.756 50.000 0.00 0.00 33.01 5.54
762 764 1.200020 CCAAAAAGTTGCTAGGCGGAG 59.800 52.381 0.00 0.00 33.01 4.63
763 765 1.880027 CAAAAAGTTGCTAGGCGGAGT 59.120 47.619 0.00 0.00 0.00 3.85
764 766 1.523758 AAAAGTTGCTAGGCGGAGTG 58.476 50.000 0.00 0.00 0.00 3.51
765 767 0.955919 AAAGTTGCTAGGCGGAGTGC 60.956 55.000 0.00 0.00 45.38 4.40
811 813 4.446413 GGGGCAGGGACACGTACG 62.446 72.222 15.01 15.01 0.00 3.67
838 848 3.096092 TCCAAAGCAAACCAGAACAGTT 58.904 40.909 0.00 0.00 0.00 3.16
839 849 4.274147 TCCAAAGCAAACCAGAACAGTTA 58.726 39.130 0.00 0.00 0.00 2.24
840 850 4.097286 TCCAAAGCAAACCAGAACAGTTAC 59.903 41.667 0.00 0.00 0.00 2.50
852 862 9.452287 AACCAGAACAGTTACTACTAAAAACAA 57.548 29.630 0.00 0.00 31.96 2.83
854 864 9.106070 CCAGAACAGTTACTACTAAAAACAACT 57.894 33.333 0.00 0.00 31.96 3.16
944 957 0.511221 CGCTTCTCGCTTTCGGAAAA 59.489 50.000 4.53 0.00 36.13 2.29
945 958 1.070175 CGCTTCTCGCTTTCGGAAAAA 60.070 47.619 4.53 0.00 36.13 1.94
946 959 2.575363 GCTTCTCGCTTTCGGAAAAAG 58.425 47.619 4.53 6.13 36.13 2.27
947 960 2.665794 GCTTCTCGCTTTCGGAAAAAGG 60.666 50.000 4.53 0.00 36.13 3.11
948 961 2.536761 TCTCGCTTTCGGAAAAAGGA 57.463 45.000 4.53 1.89 36.13 3.36
949 962 2.841215 TCTCGCTTTCGGAAAAAGGAA 58.159 42.857 4.53 0.00 36.13 3.36
956 969 4.037565 GCTTTCGGAAAAAGGAAAGGAAGA 59.962 41.667 13.48 0.00 45.76 2.87
1104 1121 6.476053 CCGTAAGTGGCTACTCTTTCTAATTC 59.524 42.308 2.06 0.00 35.69 2.17
1131 1153 2.945398 TTTCGCCGTGCCTTGTTTGC 62.945 55.000 0.00 0.00 0.00 3.68
1163 1185 4.697514 TCTGATCTGGTTATTACTGCTGC 58.302 43.478 0.00 0.00 0.00 5.25
1210 1232 1.830477 GGATCTGTCTCTTGCTGACCT 59.170 52.381 0.00 0.00 33.83 3.85
1341 1364 3.037431 ACAGATGCTGTGTTCAGAGAC 57.963 47.619 0.00 0.00 43.63 3.36
1411 1436 8.150296 AGTATTGTGGATTTTTCTTTCTTTGGG 58.850 33.333 0.00 0.00 0.00 4.12
1447 1473 1.736126 CCTGTGATGTGATGAGTGTGC 59.264 52.381 0.00 0.00 0.00 4.57
1450 1476 2.809696 TGTGATGTGATGAGTGTGCTTG 59.190 45.455 0.00 0.00 0.00 4.01
1463 1489 7.275888 TGAGTGTGCTTGTGATCTTAAATTT 57.724 32.000 0.00 0.00 0.00 1.82
1467 1493 9.683069 AGTGTGCTTGTGATCTTAAATTTAAAG 57.317 29.630 11.62 5.81 0.00 1.85
1495 1521 4.174009 GACGTCGAAATGATCCTTCTGAA 58.826 43.478 0.00 0.00 0.00 3.02
1516 1542 2.163010 AGCAATCGAAGTTGAATGGCAG 59.837 45.455 2.94 0.00 0.00 4.85
1518 1544 3.495193 CAATCGAAGTTGAATGGCAGTG 58.505 45.455 0.00 0.00 0.00 3.66
1519 1545 2.254546 TCGAAGTTGAATGGCAGTGT 57.745 45.000 0.00 0.00 0.00 3.55
1586 1614 3.611766 CGAGAGGAAAGAAGGCCTTAA 57.388 47.619 20.54 0.00 33.84 1.85
1630 3603 4.394729 TGCTACTTCCAACCGAATTTTCT 58.605 39.130 0.00 0.00 0.00 2.52
1641 3614 5.121221 ACCGAATTTTCTTCTGCGATTTT 57.879 34.783 0.00 0.00 0.00 1.82
1643 3616 6.084277 ACCGAATTTTCTTCTGCGATTTTAC 58.916 36.000 0.00 0.00 0.00 2.01
1656 3629 6.143758 TCTGCGATTTTACAAAGTGCATTTTC 59.856 34.615 3.92 0.00 0.00 2.29
2036 4009 0.396811 AAGCCCGTTGCAACTAGTCT 59.603 50.000 26.09 14.60 44.83 3.24
2062 4036 2.435805 AGGAGAAGTGTTCAGTGCTCAA 59.564 45.455 15.12 0.00 0.00 3.02
2065 4039 4.060900 GAGAAGTGTTCAGTGCTCAATGA 58.939 43.478 9.95 0.00 33.21 2.57
2066 4040 3.812053 AGAAGTGTTCAGTGCTCAATGAC 59.188 43.478 0.00 0.00 34.95 3.06
2067 4041 2.498167 AGTGTTCAGTGCTCAATGACC 58.502 47.619 0.00 0.00 34.95 4.02
2068 4042 1.537202 GTGTTCAGTGCTCAATGACCC 59.463 52.381 0.00 0.00 34.95 4.46
2069 4043 1.142667 TGTTCAGTGCTCAATGACCCA 59.857 47.619 0.00 0.00 34.95 4.51
2070 4044 2.224843 TGTTCAGTGCTCAATGACCCAT 60.225 45.455 0.00 0.00 34.95 4.00
2071 4045 2.118313 TCAGTGCTCAATGACCCATG 57.882 50.000 0.00 0.00 29.72 3.66
2072 4046 1.629861 TCAGTGCTCAATGACCCATGA 59.370 47.619 0.00 0.00 29.72 3.07
2073 4047 2.014857 CAGTGCTCAATGACCCATGAG 58.985 52.381 0.00 0.00 0.00 2.90
2074 4048 1.632409 AGTGCTCAATGACCCATGAGT 59.368 47.619 0.00 0.00 0.00 3.41
2075 4049 2.012673 GTGCTCAATGACCCATGAGTC 58.987 52.381 0.00 0.00 37.28 3.36
2076 4050 1.293924 GCTCAATGACCCATGAGTCG 58.706 55.000 2.68 0.00 39.77 4.18
2077 4051 1.945387 CTCAATGACCCATGAGTCGG 58.055 55.000 2.68 0.00 39.77 4.79
2088 4062 1.480212 ATGAGTCGGCACTGACCCAA 61.480 55.000 5.99 0.00 39.77 4.12
2092 4066 1.021390 GTCGGCACTGACCCAAGATG 61.021 60.000 0.00 0.00 32.61 2.90
2120 4094 1.266867 GCAATGGTCCCATTTGCCCT 61.267 55.000 8.84 0.00 43.32 5.19
2131 4105 3.307506 CCATTTGCCCTCCCAATCATTA 58.692 45.455 0.00 0.00 0.00 1.90
2157 4131 3.886505 TGTCGAACCAAACCTGCTTTATT 59.113 39.130 0.00 0.00 0.00 1.40
2167 4141 7.087639 CCAAACCTGCTTTATTACGAAATTGA 58.912 34.615 0.00 0.00 0.00 2.57
2238 4212 7.433680 GCATAAGTTCCAAAGAAGAAAAAGGA 58.566 34.615 0.00 0.00 30.91 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 31 9.850628 GGTTAAATTTATGGTTGAAGTTAGACC 57.149 33.333 0.00 1.11 0.00 3.85
34 35 9.680315 CGTTGGTTAAATTTATGGTTGAAGTTA 57.320 29.630 0.00 0.00 0.00 2.24
35 36 8.414778 TCGTTGGTTAAATTTATGGTTGAAGTT 58.585 29.630 0.00 0.00 0.00 2.66
36 37 7.942990 TCGTTGGTTAAATTTATGGTTGAAGT 58.057 30.769 0.00 0.00 0.00 3.01
37 38 8.293867 TCTCGTTGGTTAAATTTATGGTTGAAG 58.706 33.333 0.00 0.00 0.00 3.02
38 39 8.077386 GTCTCGTTGGTTAAATTTATGGTTGAA 58.923 33.333 0.00 0.00 0.00 2.69
39 40 7.308710 GGTCTCGTTGGTTAAATTTATGGTTGA 60.309 37.037 0.00 0.00 0.00 3.18
40 41 6.804783 GGTCTCGTTGGTTAAATTTATGGTTG 59.195 38.462 0.00 0.00 0.00 3.77
41 42 6.348704 CGGTCTCGTTGGTTAAATTTATGGTT 60.349 38.462 0.00 0.00 0.00 3.67
42 43 5.122711 CGGTCTCGTTGGTTAAATTTATGGT 59.877 40.000 0.00 0.00 0.00 3.55
43 44 5.352016 TCGGTCTCGTTGGTTAAATTTATGG 59.648 40.000 0.00 0.00 37.69 2.74
44 45 6.091713 AGTCGGTCTCGTTGGTTAAATTTATG 59.908 38.462 0.00 0.00 37.69 1.90
45 46 6.091713 CAGTCGGTCTCGTTGGTTAAATTTAT 59.908 38.462 0.00 0.00 37.69 1.40
46 47 5.406175 CAGTCGGTCTCGTTGGTTAAATTTA 59.594 40.000 0.00 0.00 37.69 1.40
47 48 4.212636 CAGTCGGTCTCGTTGGTTAAATTT 59.787 41.667 0.00 0.00 37.69 1.82
48 49 3.744426 CAGTCGGTCTCGTTGGTTAAATT 59.256 43.478 0.00 0.00 37.69 1.82
49 50 3.323243 CAGTCGGTCTCGTTGGTTAAAT 58.677 45.455 0.00 0.00 37.69 1.40
50 51 2.746269 CAGTCGGTCTCGTTGGTTAAA 58.254 47.619 0.00 0.00 37.69 1.52
51 52 1.603678 GCAGTCGGTCTCGTTGGTTAA 60.604 52.381 0.00 0.00 37.69 2.01
52 53 0.038892 GCAGTCGGTCTCGTTGGTTA 60.039 55.000 0.00 0.00 37.69 2.85
53 54 1.300697 GCAGTCGGTCTCGTTGGTT 60.301 57.895 0.00 0.00 37.69 3.67
54 55 2.338984 GCAGTCGGTCTCGTTGGT 59.661 61.111 0.00 0.00 37.69 3.67
55 56 2.805353 CGCAGTCGGTCTCGTTGG 60.805 66.667 0.00 0.00 37.69 3.77
65 66 0.882927 TTTTTCTCCCACCGCAGTCG 60.883 55.000 0.00 0.00 0.00 4.18
66 67 3.015516 TTTTTCTCCCACCGCAGTC 57.984 52.632 0.00 0.00 0.00 3.51
109 110 8.942338 AAGTTATAGCAGTGAATTCGTATTCA 57.058 30.769 12.80 12.80 45.99 2.57
111 112 9.988350 CAAAAGTTATAGCAGTGAATTCGTATT 57.012 29.630 0.04 0.00 0.00 1.89
112 113 8.122952 GCAAAAGTTATAGCAGTGAATTCGTAT 58.877 33.333 0.04 0.00 0.00 3.06
113 114 7.333423 AGCAAAAGTTATAGCAGTGAATTCGTA 59.667 33.333 0.04 0.00 0.00 3.43
114 115 6.149474 AGCAAAAGTTATAGCAGTGAATTCGT 59.851 34.615 0.04 0.00 0.00 3.85
115 116 6.546395 AGCAAAAGTTATAGCAGTGAATTCG 58.454 36.000 0.04 0.00 0.00 3.34
116 117 8.239998 AGAAGCAAAAGTTATAGCAGTGAATTC 58.760 33.333 0.00 0.00 0.00 2.17
117 118 8.025445 CAGAAGCAAAAGTTATAGCAGTGAATT 58.975 33.333 0.00 0.00 0.00 2.17
118 119 7.533426 CAGAAGCAAAAGTTATAGCAGTGAAT 58.467 34.615 0.00 0.00 0.00 2.57
119 120 6.568462 GCAGAAGCAAAAGTTATAGCAGTGAA 60.568 38.462 0.00 0.00 41.58 3.18
120 121 5.106555 GCAGAAGCAAAAGTTATAGCAGTGA 60.107 40.000 0.00 0.00 41.58 3.41
121 122 5.091431 GCAGAAGCAAAAGTTATAGCAGTG 58.909 41.667 0.00 0.00 41.58 3.66
122 123 4.156739 GGCAGAAGCAAAAGTTATAGCAGT 59.843 41.667 0.00 0.00 44.61 4.40
123 124 4.666237 GGCAGAAGCAAAAGTTATAGCAG 58.334 43.478 0.00 0.00 44.61 4.24
124 125 3.126858 CGGCAGAAGCAAAAGTTATAGCA 59.873 43.478 0.00 0.00 44.61 3.49
125 126 3.685058 CGGCAGAAGCAAAAGTTATAGC 58.315 45.455 0.00 0.00 44.61 2.97
126 127 3.126858 TGCGGCAGAAGCAAAAGTTATAG 59.873 43.478 0.00 0.00 44.61 1.31
127 128 3.078097 TGCGGCAGAAGCAAAAGTTATA 58.922 40.909 0.00 0.00 44.61 0.98
128 129 1.885887 TGCGGCAGAAGCAAAAGTTAT 59.114 42.857 0.00 0.00 44.61 1.89
129 130 1.266718 CTGCGGCAGAAGCAAAAGTTA 59.733 47.619 25.33 0.00 44.67 2.24
130 131 0.031178 CTGCGGCAGAAGCAAAAGTT 59.969 50.000 25.33 0.00 44.67 2.66
131 132 1.103398 ACTGCGGCAGAAGCAAAAGT 61.103 50.000 34.70 8.45 44.67 2.66
132 133 0.386478 GACTGCGGCAGAAGCAAAAG 60.386 55.000 34.70 7.76 44.67 2.27
133 134 1.654220 GACTGCGGCAGAAGCAAAA 59.346 52.632 34.70 0.00 44.67 2.44
134 135 2.606961 CGACTGCGGCAGAAGCAAA 61.607 57.895 34.70 0.00 44.67 3.68
135 136 3.043713 CGACTGCGGCAGAAGCAA 61.044 61.111 34.70 0.00 44.67 3.91
145 146 2.805353 CCAACGAGACCGACTGCG 60.805 66.667 0.00 0.00 39.50 5.18
146 147 1.300697 AACCAACGAGACCGACTGC 60.301 57.895 0.00 0.00 39.50 4.40
147 148 0.031585 TCAACCAACGAGACCGACTG 59.968 55.000 0.00 0.00 39.50 3.51
148 149 0.748450 TTCAACCAACGAGACCGACT 59.252 50.000 0.00 0.00 39.50 4.18
149 150 1.792006 ATTCAACCAACGAGACCGAC 58.208 50.000 0.00 0.00 39.50 4.79
150 151 2.536761 AATTCAACCAACGAGACCGA 57.463 45.000 0.00 0.00 39.50 4.69
151 152 4.378046 CCTTAAATTCAACCAACGAGACCG 60.378 45.833 0.00 0.00 42.50 4.79
152 153 4.517832 ACCTTAAATTCAACCAACGAGACC 59.482 41.667 0.00 0.00 0.00 3.85
153 154 5.237779 TGACCTTAAATTCAACCAACGAGAC 59.762 40.000 0.00 0.00 0.00 3.36
154 155 5.369833 TGACCTTAAATTCAACCAACGAGA 58.630 37.500 0.00 0.00 0.00 4.04
155 156 5.682943 TGACCTTAAATTCAACCAACGAG 57.317 39.130 0.00 0.00 0.00 4.18
156 157 6.095720 ACTTTGACCTTAAATTCAACCAACGA 59.904 34.615 0.00 0.00 31.42 3.85
157 158 6.270064 ACTTTGACCTTAAATTCAACCAACG 58.730 36.000 0.00 0.00 31.42 4.10
158 159 9.589111 TTAACTTTGACCTTAAATTCAACCAAC 57.411 29.630 0.00 0.00 31.42 3.77
160 161 9.810545 CTTTAACTTTGACCTTAAATTCAACCA 57.189 29.630 0.00 0.00 31.42 3.67
161 162 8.761497 GCTTTAACTTTGACCTTAAATTCAACC 58.239 33.333 0.00 0.00 31.42 3.77
162 163 9.308318 TGCTTTAACTTTGACCTTAAATTCAAC 57.692 29.630 0.00 0.00 31.42 3.18
163 164 9.308318 GTGCTTTAACTTTGACCTTAAATTCAA 57.692 29.630 0.00 0.00 0.00 2.69
164 165 8.470805 TGTGCTTTAACTTTGACCTTAAATTCA 58.529 29.630 0.00 0.00 0.00 2.57
165 166 8.865590 TGTGCTTTAACTTTGACCTTAAATTC 57.134 30.769 0.00 0.00 0.00 2.17
166 167 9.660180 TTTGTGCTTTAACTTTGACCTTAAATT 57.340 25.926 0.00 0.00 0.00 1.82
167 168 9.660180 TTTTGTGCTTTAACTTTGACCTTAAAT 57.340 25.926 0.00 0.00 0.00 1.40
168 169 9.490379 TTTTTGTGCTTTAACTTTGACCTTAAA 57.510 25.926 0.00 0.00 0.00 1.52
169 170 9.660180 ATTTTTGTGCTTTAACTTTGACCTTAA 57.340 25.926 0.00 0.00 0.00 1.85
171 172 9.313118 CTATTTTTGTGCTTTAACTTTGACCTT 57.687 29.630 0.00 0.00 0.00 3.50
172 173 8.691797 TCTATTTTTGTGCTTTAACTTTGACCT 58.308 29.630 0.00 0.00 0.00 3.85
173 174 8.865590 TCTATTTTTGTGCTTTAACTTTGACC 57.134 30.769 0.00 0.00 0.00 4.02
178 179 9.196552 GCTTCATCTATTTTTGTGCTTTAACTT 57.803 29.630 0.00 0.00 0.00 2.66
179 180 8.359642 TGCTTCATCTATTTTTGTGCTTTAACT 58.640 29.630 0.00 0.00 0.00 2.24
180 181 8.427774 GTGCTTCATCTATTTTTGTGCTTTAAC 58.572 33.333 0.00 0.00 0.00 2.01
181 182 8.359642 AGTGCTTCATCTATTTTTGTGCTTTAA 58.640 29.630 0.00 0.00 0.00 1.52
182 183 7.885297 AGTGCTTCATCTATTTTTGTGCTTTA 58.115 30.769 0.00 0.00 0.00 1.85
183 184 6.752168 AGTGCTTCATCTATTTTTGTGCTTT 58.248 32.000 0.00 0.00 0.00 3.51
184 185 6.336842 AGTGCTTCATCTATTTTTGTGCTT 57.663 33.333 0.00 0.00 0.00 3.91
185 186 5.972107 AGTGCTTCATCTATTTTTGTGCT 57.028 34.783 0.00 0.00 0.00 4.40
186 187 9.956720 AATATAGTGCTTCATCTATTTTTGTGC 57.043 29.630 0.00 0.00 0.00 4.57
195 196 8.826710 CCGTTTCAAAATATAGTGCTTCATCTA 58.173 33.333 0.00 0.00 0.00 1.98
196 197 7.552687 TCCGTTTCAAAATATAGTGCTTCATCT 59.447 33.333 0.00 0.00 0.00 2.90
197 198 7.693952 TCCGTTTCAAAATATAGTGCTTCATC 58.306 34.615 0.00 0.00 0.00 2.92
198 199 7.201732 CCTCCGTTTCAAAATATAGTGCTTCAT 60.202 37.037 0.00 0.00 0.00 2.57
199 200 6.093495 CCTCCGTTTCAAAATATAGTGCTTCA 59.907 38.462 0.00 0.00 0.00 3.02
200 201 6.315393 TCCTCCGTTTCAAAATATAGTGCTTC 59.685 38.462 0.00 0.00 0.00 3.86
201 202 6.093633 GTCCTCCGTTTCAAAATATAGTGCTT 59.906 38.462 0.00 0.00 0.00 3.91
202 203 5.585047 GTCCTCCGTTTCAAAATATAGTGCT 59.415 40.000 0.00 0.00 0.00 4.40
203 204 5.353123 TGTCCTCCGTTTCAAAATATAGTGC 59.647 40.000 0.00 0.00 0.00 4.40
204 205 6.978343 TGTCCTCCGTTTCAAAATATAGTG 57.022 37.500 0.00 0.00 0.00 2.74
205 206 8.262227 TGTATGTCCTCCGTTTCAAAATATAGT 58.738 33.333 0.00 0.00 0.00 2.12
206 207 8.657074 TGTATGTCCTCCGTTTCAAAATATAG 57.343 34.615 0.00 0.00 0.00 1.31
207 208 8.262227 ACTGTATGTCCTCCGTTTCAAAATATA 58.738 33.333 0.00 0.00 0.00 0.86
208 209 7.110155 ACTGTATGTCCTCCGTTTCAAAATAT 58.890 34.615 0.00 0.00 0.00 1.28
209 210 6.469410 ACTGTATGTCCTCCGTTTCAAAATA 58.531 36.000 0.00 0.00 0.00 1.40
210 211 5.313712 ACTGTATGTCCTCCGTTTCAAAAT 58.686 37.500 0.00 0.00 0.00 1.82
211 212 4.710324 ACTGTATGTCCTCCGTTTCAAAA 58.290 39.130 0.00 0.00 0.00 2.44
212 213 4.345859 ACTGTATGTCCTCCGTTTCAAA 57.654 40.909 0.00 0.00 0.00 2.69
213 214 5.670792 ATACTGTATGTCCTCCGTTTCAA 57.329 39.130 0.00 0.00 0.00 2.69
214 215 6.124340 TCTATACTGTATGTCCTCCGTTTCA 58.876 40.000 10.51 0.00 0.00 2.69
215 216 6.630444 TCTATACTGTATGTCCTCCGTTTC 57.370 41.667 10.51 0.00 0.00 2.78
216 217 6.183360 GGTTCTATACTGTATGTCCTCCGTTT 60.183 42.308 10.51 0.00 0.00 3.60
217 218 5.301298 GGTTCTATACTGTATGTCCTCCGTT 59.699 44.000 10.51 0.00 0.00 4.44
218 219 4.826183 GGTTCTATACTGTATGTCCTCCGT 59.174 45.833 10.51 0.00 0.00 4.69
219 220 4.825634 TGGTTCTATACTGTATGTCCTCCG 59.174 45.833 10.51 0.00 0.00 4.63
220 221 6.919775 ATGGTTCTATACTGTATGTCCTCC 57.080 41.667 10.51 7.10 0.00 4.30
221 222 7.868415 GTGAATGGTTCTATACTGTATGTCCTC 59.132 40.741 10.51 3.78 0.00 3.71
222 223 7.202011 GGTGAATGGTTCTATACTGTATGTCCT 60.202 40.741 10.51 0.00 0.00 3.85
223 224 6.929606 GGTGAATGGTTCTATACTGTATGTCC 59.070 42.308 10.51 7.69 0.00 4.02
224 225 7.497595 TGGTGAATGGTTCTATACTGTATGTC 58.502 38.462 10.51 0.00 0.00 3.06
225 226 7.432148 TGGTGAATGGTTCTATACTGTATGT 57.568 36.000 10.51 0.00 0.00 2.29
226 227 8.908786 ATTGGTGAATGGTTCTATACTGTATG 57.091 34.615 10.51 1.48 0.00 2.39
228 229 9.996554 CATATTGGTGAATGGTTCTATACTGTA 57.003 33.333 0.00 0.00 0.00 2.74
229 230 7.939039 CCATATTGGTGAATGGTTCTATACTGT 59.061 37.037 0.00 0.00 38.28 3.55
230 231 8.327941 CCATATTGGTGAATGGTTCTATACTG 57.672 38.462 0.00 0.00 38.28 2.74
249 250 7.041107 GTGAAATGCATGTTGGTAACCATATT 58.959 34.615 0.00 0.00 31.53 1.28
252 253 4.282957 TGTGAAATGCATGTTGGTAACCAT 59.717 37.500 0.00 0.00 31.53 3.55
275 276 1.878102 GCTTTCCTGTCGATGGTGTGT 60.878 52.381 7.20 0.00 0.00 3.72
287 288 1.813513 ACTCAATCGTGGCTTTCCTG 58.186 50.000 0.00 0.00 0.00 3.86
293 294 1.244019 GGGCAAACTCAATCGTGGCT 61.244 55.000 0.00 0.00 36.81 4.75
316 317 7.557719 CCCATATTCATACACTTTTTGGACTCT 59.442 37.037 0.00 0.00 0.00 3.24
317 318 7.682021 GCCCATATTCATACACTTTTTGGACTC 60.682 40.741 0.00 0.00 0.00 3.36
318 319 6.096846 GCCCATATTCATACACTTTTTGGACT 59.903 38.462 0.00 0.00 0.00 3.85
319 320 6.127479 TGCCCATATTCATACACTTTTTGGAC 60.127 38.462 0.00 0.00 0.00 4.02
320 321 5.954752 TGCCCATATTCATACACTTTTTGGA 59.045 36.000 0.00 0.00 0.00 3.53
321 322 6.219417 TGCCCATATTCATACACTTTTTGG 57.781 37.500 0.00 0.00 0.00 3.28
326 327 9.842775 CTCATATATGCCCATATTCATACACTT 57.157 33.333 7.92 0.00 35.71 3.16
327 328 7.935755 GCTCATATATGCCCATATTCATACACT 59.064 37.037 7.92 0.00 35.71 3.55
328 329 7.173907 GGCTCATATATGCCCATATTCATACAC 59.826 40.741 7.92 0.00 43.11 2.90
329 330 7.226441 GGCTCATATATGCCCATATTCATACA 58.774 38.462 7.92 0.00 43.11 2.29
330 331 7.678947 GGCTCATATATGCCCATATTCATAC 57.321 40.000 7.92 0.00 43.11 2.39
396 397 0.310543 TTGCATGCGCGAGACTTTTT 59.689 45.000 12.10 0.00 42.97 1.94
397 398 0.523072 ATTGCATGCGCGAGACTTTT 59.477 45.000 12.10 0.00 42.97 2.27
398 399 0.097674 GATTGCATGCGCGAGACTTT 59.902 50.000 12.10 0.00 42.97 2.66
399 400 0.742281 AGATTGCATGCGCGAGACTT 60.742 50.000 12.10 0.00 42.97 3.01
400 401 0.742281 AAGATTGCATGCGCGAGACT 60.742 50.000 12.10 3.68 42.97 3.24
401 402 0.588233 CAAGATTGCATGCGCGAGAC 60.588 55.000 12.10 0.00 42.97 3.36
402 403 0.740516 TCAAGATTGCATGCGCGAGA 60.741 50.000 12.10 3.27 42.97 4.04
403 404 0.588233 GTCAAGATTGCATGCGCGAG 60.588 55.000 12.10 0.00 42.97 5.03
404 405 1.297456 TGTCAAGATTGCATGCGCGA 61.297 50.000 12.10 1.55 42.97 5.87
405 406 0.248336 ATGTCAAGATTGCATGCGCG 60.248 50.000 14.09 0.00 42.97 6.86
406 407 1.850441 GAATGTCAAGATTGCATGCGC 59.150 47.619 14.09 0.00 39.24 6.09
407 408 3.416119 AGAATGTCAAGATTGCATGCG 57.584 42.857 14.09 0.00 30.49 4.73
408 409 5.220381 CCATAGAATGTCAAGATTGCATGC 58.780 41.667 11.82 11.82 0.00 4.06
409 410 5.769367 CCCATAGAATGTCAAGATTGCATG 58.231 41.667 0.00 0.00 0.00 4.06
410 411 4.280174 GCCCATAGAATGTCAAGATTGCAT 59.720 41.667 0.00 0.00 0.00 3.96
411 412 3.633525 GCCCATAGAATGTCAAGATTGCA 59.366 43.478 0.00 0.00 0.00 4.08
412 413 3.633525 TGCCCATAGAATGTCAAGATTGC 59.366 43.478 0.00 0.00 0.00 3.56
413 414 4.261489 GCTGCCCATAGAATGTCAAGATTG 60.261 45.833 0.00 0.00 0.00 2.67
414 415 3.887716 GCTGCCCATAGAATGTCAAGATT 59.112 43.478 0.00 0.00 0.00 2.40
415 416 3.117776 TGCTGCCCATAGAATGTCAAGAT 60.118 43.478 0.00 0.00 0.00 2.40
416 417 2.239402 TGCTGCCCATAGAATGTCAAGA 59.761 45.455 0.00 0.00 0.00 3.02
417 418 2.646930 TGCTGCCCATAGAATGTCAAG 58.353 47.619 0.00 0.00 0.00 3.02
418 419 2.804986 TGCTGCCCATAGAATGTCAA 57.195 45.000 0.00 0.00 0.00 3.18
419 420 2.804986 TTGCTGCCCATAGAATGTCA 57.195 45.000 0.00 0.00 0.00 3.58
420 421 4.082026 ACTTTTTGCTGCCCATAGAATGTC 60.082 41.667 0.00 0.00 0.00 3.06
421 422 3.834231 ACTTTTTGCTGCCCATAGAATGT 59.166 39.130 0.00 0.00 0.00 2.71
422 423 4.460948 ACTTTTTGCTGCCCATAGAATG 57.539 40.909 0.00 0.00 0.00 2.67
423 424 5.011943 TGAAACTTTTTGCTGCCCATAGAAT 59.988 36.000 0.00 0.00 0.00 2.40
424 425 4.343526 TGAAACTTTTTGCTGCCCATAGAA 59.656 37.500 0.00 0.00 0.00 2.10
425 426 3.894427 TGAAACTTTTTGCTGCCCATAGA 59.106 39.130 0.00 0.00 0.00 1.98
426 427 4.255833 TGAAACTTTTTGCTGCCCATAG 57.744 40.909 0.00 0.00 0.00 2.23
427 428 4.563168 CCATGAAACTTTTTGCTGCCCATA 60.563 41.667 0.00 0.00 0.00 2.74
428 429 3.404899 CATGAAACTTTTTGCTGCCCAT 58.595 40.909 0.00 0.00 0.00 4.00
429 430 2.485124 CCATGAAACTTTTTGCTGCCCA 60.485 45.455 0.00 0.00 0.00 5.36
430 431 2.145536 CCATGAAACTTTTTGCTGCCC 58.854 47.619 0.00 0.00 0.00 5.36
431 432 3.110447 TCCATGAAACTTTTTGCTGCC 57.890 42.857 0.00 0.00 0.00 4.85
432 433 5.065090 ACTTTTCCATGAAACTTTTTGCTGC 59.935 36.000 0.00 0.00 30.83 5.25
433 434 6.667007 ACTTTTCCATGAAACTTTTTGCTG 57.333 33.333 0.00 0.00 30.83 4.41
434 435 8.040727 AGTTACTTTTCCATGAAACTTTTTGCT 58.959 29.630 0.00 0.00 30.83 3.91
435 436 8.196802 AGTTACTTTTCCATGAAACTTTTTGC 57.803 30.769 0.00 0.00 30.83 3.68
444 445 9.377312 CCAAAGAAAAAGTTACTTTTCCATGAA 57.623 29.630 21.29 0.00 41.98 2.57
445 446 7.494298 GCCAAAGAAAAAGTTACTTTTCCATGA 59.506 33.333 21.29 0.00 41.98 3.07
446 447 7.495606 AGCCAAAGAAAAAGTTACTTTTCCATG 59.504 33.333 21.29 16.68 41.98 3.66
447 448 7.564793 AGCCAAAGAAAAAGTTACTTTTCCAT 58.435 30.769 21.29 8.08 41.98 3.41
448 449 6.941857 AGCCAAAGAAAAAGTTACTTTTCCA 58.058 32.000 21.29 0.00 41.98 3.53
449 450 7.333423 ACAAGCCAAAGAAAAAGTTACTTTTCC 59.667 33.333 21.29 10.90 41.98 3.13
450 451 8.168626 CACAAGCCAAAGAAAAAGTTACTTTTC 58.831 33.333 21.29 14.86 41.98 2.29
451 452 7.360861 GCACAAGCCAAAGAAAAAGTTACTTTT 60.361 33.333 16.34 16.34 38.86 2.27
452 453 6.092122 GCACAAGCCAAAGAAAAAGTTACTTT 59.908 34.615 4.30 4.30 32.69 2.66
453 454 5.580691 GCACAAGCCAAAGAAAAAGTTACTT 59.419 36.000 0.00 0.00 33.58 2.24
454 455 5.109210 GCACAAGCCAAAGAAAAAGTTACT 58.891 37.500 0.00 0.00 33.58 2.24
455 456 4.867608 TGCACAAGCCAAAGAAAAAGTTAC 59.132 37.500 0.00 0.00 41.13 2.50
456 457 5.078411 TGCACAAGCCAAAGAAAAAGTTA 57.922 34.783 0.00 0.00 41.13 2.24
457 458 3.936564 TGCACAAGCCAAAGAAAAAGTT 58.063 36.364 0.00 0.00 41.13 2.66
458 459 3.608316 TGCACAAGCCAAAGAAAAAGT 57.392 38.095 0.00 0.00 41.13 2.66
459 460 4.943142 TTTGCACAAGCCAAAGAAAAAG 57.057 36.364 0.00 0.00 41.13 2.27
460 461 5.695851 TTTTTGCACAAGCCAAAGAAAAA 57.304 30.435 0.00 0.00 36.82 1.94
491 492 7.156876 TCTAAATCGCATTCCATGACTTTTT 57.843 32.000 0.00 0.00 0.00 1.94
492 493 6.757897 TCTAAATCGCATTCCATGACTTTT 57.242 33.333 0.00 0.00 0.00 2.27
493 494 6.678900 GCTTCTAAATCGCATTCCATGACTTT 60.679 38.462 0.00 0.00 0.00 2.66
494 495 5.220931 GCTTCTAAATCGCATTCCATGACTT 60.221 40.000 0.00 0.00 0.00 3.01
495 496 4.274459 GCTTCTAAATCGCATTCCATGACT 59.726 41.667 0.00 0.00 0.00 3.41
496 497 4.035558 TGCTTCTAAATCGCATTCCATGAC 59.964 41.667 0.00 0.00 0.00 3.06
497 498 4.035558 GTGCTTCTAAATCGCATTCCATGA 59.964 41.667 0.00 0.00 35.93 3.07
498 499 4.036027 AGTGCTTCTAAATCGCATTCCATG 59.964 41.667 0.00 0.00 35.93 3.66
499 500 4.036027 CAGTGCTTCTAAATCGCATTCCAT 59.964 41.667 0.00 0.00 35.93 3.41
500 501 3.374988 CAGTGCTTCTAAATCGCATTCCA 59.625 43.478 0.00 0.00 35.93 3.53
501 502 3.623060 TCAGTGCTTCTAAATCGCATTCC 59.377 43.478 0.00 0.00 35.93 3.01
502 503 4.864916 TCAGTGCTTCTAAATCGCATTC 57.135 40.909 0.00 0.00 35.93 2.67
503 504 5.824904 ATTCAGTGCTTCTAAATCGCATT 57.175 34.783 0.00 0.00 35.93 3.56
504 505 5.824904 AATTCAGTGCTTCTAAATCGCAT 57.175 34.783 0.00 0.00 35.93 4.73
505 506 5.627499 AAATTCAGTGCTTCTAAATCGCA 57.373 34.783 0.00 0.00 0.00 5.10
506 507 5.858581 ACAAAATTCAGTGCTTCTAAATCGC 59.141 36.000 0.00 0.00 0.00 4.58
507 508 7.858052 AACAAAATTCAGTGCTTCTAAATCG 57.142 32.000 0.00 0.00 0.00 3.34
567 568 2.915458 CGCGCGGCACAAAGTTTTG 61.915 57.895 24.84 3.17 43.62 2.44
568 569 2.653766 CGCGCGGCACAAAGTTTT 60.654 55.556 24.84 0.00 0.00 2.43
578 579 4.360027 CAGATATGTGCGCGCGGC 62.360 66.667 33.06 23.43 43.96 6.53
579 580 2.961721 ACAGATATGTGCGCGCGG 60.962 61.111 33.06 13.78 0.00 6.46
580 581 1.551503 ATCACAGATATGTGCGCGCG 61.552 55.000 28.44 28.44 39.49 6.86
581 582 0.110956 CATCACAGATATGTGCGCGC 60.111 55.000 27.26 27.26 39.49 6.86
582 583 1.490621 TCATCACAGATATGTGCGCG 58.509 50.000 15.67 0.00 39.49 6.86
583 584 2.804527 ACATCATCACAGATATGTGCGC 59.195 45.455 15.67 0.00 39.49 6.09
584 585 5.636543 ACATACATCATCACAGATATGTGCG 59.363 40.000 15.67 9.20 39.49 5.34
585 586 6.647895 TCACATACATCATCACAGATATGTGC 59.352 38.462 15.67 0.00 40.95 4.57
586 587 8.086522 TCTCACATACATCATCACAGATATGTG 58.913 37.037 14.37 14.37 41.71 3.21
587 588 8.186709 TCTCACATACATCATCACAGATATGT 57.813 34.615 0.00 0.00 36.56 2.29
588 589 9.485206 TTTCTCACATACATCATCACAGATATG 57.515 33.333 0.00 0.00 0.00 1.78
590 591 9.485206 CATTTCTCACATACATCATCACAGATA 57.515 33.333 0.00 0.00 0.00 1.98
591 592 7.991460 ACATTTCTCACATACATCATCACAGAT 59.009 33.333 0.00 0.00 0.00 2.90
592 593 7.333323 ACATTTCTCACATACATCATCACAGA 58.667 34.615 0.00 0.00 0.00 3.41
593 594 7.549615 ACATTTCTCACATACATCATCACAG 57.450 36.000 0.00 0.00 0.00 3.66
594 595 7.926674 AACATTTCTCACATACATCATCACA 57.073 32.000 0.00 0.00 0.00 3.58
595 596 9.630098 AAAAACATTTCTCACATACATCATCAC 57.370 29.630 0.00 0.00 0.00 3.06
658 659 7.986889 GGCATATGAACCCACTTTTCAAAATAT 59.013 33.333 6.97 0.00 36.57 1.28
659 660 7.038729 TGGCATATGAACCCACTTTTCAAAATA 60.039 33.333 6.97 0.00 36.57 1.40
660 661 6.172630 GGCATATGAACCCACTTTTCAAAAT 58.827 36.000 6.97 0.00 36.57 1.82
661 662 5.070981 TGGCATATGAACCCACTTTTCAAAA 59.929 36.000 6.97 0.00 36.57 2.44
662 663 4.590647 TGGCATATGAACCCACTTTTCAAA 59.409 37.500 6.97 0.00 36.57 2.69
663 664 4.155709 TGGCATATGAACCCACTTTTCAA 58.844 39.130 6.97 0.00 36.57 2.69
664 665 3.772387 TGGCATATGAACCCACTTTTCA 58.228 40.909 6.97 0.00 37.38 2.69
665 666 4.160252 ACATGGCATATGAACCCACTTTTC 59.840 41.667 6.97 0.00 0.00 2.29
666 667 4.081531 CACATGGCATATGAACCCACTTTT 60.082 41.667 6.97 0.00 0.00 2.27
667 668 3.448301 CACATGGCATATGAACCCACTTT 59.552 43.478 6.97 0.00 0.00 2.66
668 669 3.025978 CACATGGCATATGAACCCACTT 58.974 45.455 6.97 0.00 0.00 3.16
669 670 2.025037 ACACATGGCATATGAACCCACT 60.025 45.455 13.59 0.00 0.00 4.00
670 671 2.099592 CACACATGGCATATGAACCCAC 59.900 50.000 13.59 0.00 0.00 4.61
671 672 2.377073 CACACATGGCATATGAACCCA 58.623 47.619 13.59 4.88 0.00 4.51
672 673 1.067516 GCACACATGGCATATGAACCC 59.932 52.381 13.59 0.00 0.00 4.11
673 674 2.026641 AGCACACATGGCATATGAACC 58.973 47.619 13.59 0.00 0.00 3.62
674 675 2.223641 CCAGCACACATGGCATATGAAC 60.224 50.000 13.59 3.74 0.00 3.18
675 676 2.025898 CCAGCACACATGGCATATGAA 58.974 47.619 13.59 0.00 0.00 2.57
676 677 1.212441 TCCAGCACACATGGCATATGA 59.788 47.619 13.59 0.00 37.76 2.15
677 678 1.335810 GTCCAGCACACATGGCATATG 59.664 52.381 3.78 3.78 37.76 1.78
678 679 1.683943 GTCCAGCACACATGGCATAT 58.316 50.000 0.00 0.00 37.76 1.78
679 680 0.744057 CGTCCAGCACACATGGCATA 60.744 55.000 0.00 0.00 37.76 3.14
680 681 2.042259 CGTCCAGCACACATGGCAT 61.042 57.895 0.00 0.00 37.76 4.40
681 682 2.105806 TACGTCCAGCACACATGGCA 62.106 55.000 0.00 0.00 37.76 4.92
682 683 1.375396 TACGTCCAGCACACATGGC 60.375 57.895 0.00 0.00 37.76 4.40
683 684 0.037326 AGTACGTCCAGCACACATGG 60.037 55.000 0.00 0.00 39.33 3.66
684 685 1.067565 AGAGTACGTCCAGCACACATG 60.068 52.381 0.00 0.00 0.00 3.21
685 686 1.202582 GAGAGTACGTCCAGCACACAT 59.797 52.381 0.00 0.00 0.00 3.21
686 687 0.596577 GAGAGTACGTCCAGCACACA 59.403 55.000 0.00 0.00 0.00 3.72
687 688 0.882474 AGAGAGTACGTCCAGCACAC 59.118 55.000 0.00 0.00 0.00 3.82
688 689 1.166129 GAGAGAGTACGTCCAGCACA 58.834 55.000 0.00 0.00 0.00 4.57
689 690 0.097325 CGAGAGAGTACGTCCAGCAC 59.903 60.000 0.00 0.00 0.00 4.40
690 691 1.645704 GCGAGAGAGTACGTCCAGCA 61.646 60.000 0.00 0.00 0.00 4.41
691 692 1.062845 GCGAGAGAGTACGTCCAGC 59.937 63.158 0.00 0.00 0.00 4.85
692 693 0.803117 TTGCGAGAGAGTACGTCCAG 59.197 55.000 0.00 0.00 0.00 3.86
693 694 0.803117 CTTGCGAGAGAGTACGTCCA 59.197 55.000 0.00 0.00 0.00 4.02
694 695 1.085091 TCTTGCGAGAGAGTACGTCC 58.915 55.000 0.00 0.00 0.00 4.79
743 744 1.880027 ACTCCGCCTAGCAACTTTTTG 59.120 47.619 0.00 0.00 35.62 2.44
765 767 3.496309 TTGGCCACCTGCAGTCCTG 62.496 63.158 3.88 4.68 43.89 3.86
766 768 3.177884 TTGGCCACCTGCAGTCCT 61.178 61.111 3.88 0.00 43.89 3.85
793 795 3.315949 GTACGTGTCCCTGCCCCA 61.316 66.667 0.00 0.00 0.00 4.96
794 796 4.446413 CGTACGTGTCCCTGCCCC 62.446 72.222 7.22 0.00 0.00 5.80
797 799 4.367023 TGGCGTACGTGTCCCTGC 62.367 66.667 17.90 0.00 0.00 4.85
811 813 1.367471 GGTTTGCTTTGGAGGTGGC 59.633 57.895 0.00 0.00 0.00 5.01
838 848 9.880157 ACAAGACTTCAGTTGTTTTTAGTAGTA 57.120 29.630 0.00 0.00 32.93 1.82
839 849 8.788325 ACAAGACTTCAGTTGTTTTTAGTAGT 57.212 30.769 0.00 0.00 32.93 2.73
840 850 9.099454 AGACAAGACTTCAGTTGTTTTTAGTAG 57.901 33.333 0.00 0.00 37.02 2.57
852 862 8.189460 GTCCGTTTATATAGACAAGACTTCAGT 58.811 37.037 12.72 0.00 0.00 3.41
854 864 7.148188 ACGTCCGTTTATATAGACAAGACTTCA 60.148 37.037 15.71 0.00 0.00 3.02
939 952 5.828328 TCTCTGTTCTTCCTTTCCTTTTTCC 59.172 40.000 0.00 0.00 0.00 3.13
944 957 6.253946 TCTTTCTCTGTTCTTCCTTTCCTT 57.746 37.500 0.00 0.00 0.00 3.36
945 958 5.896073 TCTTTCTCTGTTCTTCCTTTCCT 57.104 39.130 0.00 0.00 0.00 3.36
946 959 6.768381 TCTTTCTTTCTCTGTTCTTCCTTTCC 59.232 38.462 0.00 0.00 0.00 3.13
947 960 7.793927 TCTTTCTTTCTCTGTTCTTCCTTTC 57.206 36.000 0.00 0.00 0.00 2.62
948 961 7.201776 GCTTCTTTCTTTCTCTGTTCTTCCTTT 60.202 37.037 0.00 0.00 0.00 3.11
949 962 6.262049 GCTTCTTTCTTTCTCTGTTCTTCCTT 59.738 38.462 0.00 0.00 0.00 3.36
956 969 5.041191 TCTGGCTTCTTTCTTTCTCTGTT 57.959 39.130 0.00 0.00 0.00 3.16
1131 1153 7.537596 AATAACCAGATCAGATAGGAGACTG 57.462 40.000 8.11 0.00 43.88 3.51
1163 1185 1.280982 CACCTGAATCGACACATCCG 58.719 55.000 0.00 0.00 0.00 4.18
1210 1232 1.692121 CCCCGGTATGTACCCCAGTAA 60.692 57.143 0.00 0.00 43.51 2.24
1332 1355 4.318332 TGATCAACACATGGTCTCTGAAC 58.682 43.478 0.00 0.00 40.06 3.18
1341 1364 2.413239 GCACGAACTGATCAACACATGG 60.413 50.000 0.00 0.00 0.00 3.66
1411 1436 2.993899 CACAGGTCAACAATACCGAGTC 59.006 50.000 0.00 0.00 42.15 3.36
1463 1489 6.477688 GGATCATTTCGACGTCCAATACTTTA 59.522 38.462 10.58 0.00 0.00 1.85
1467 1493 4.369182 AGGATCATTTCGACGTCCAATAC 58.631 43.478 10.58 4.36 0.00 1.89
1495 1521 2.161855 TGCCATTCAACTTCGATTGCT 58.838 42.857 0.00 0.00 0.00 3.91
1516 1542 4.370364 TTGGAGAAACTTTCAGCAACAC 57.630 40.909 4.34 0.00 0.00 3.32
1518 1544 4.363138 CCTTTGGAGAAACTTTCAGCAAC 58.637 43.478 4.34 0.00 0.00 4.17
1519 1545 3.181476 GCCTTTGGAGAAACTTTCAGCAA 60.181 43.478 4.34 0.00 0.00 3.91
1565 1593 0.615850 AAGGCCTTCTTTCCTCTCGG 59.384 55.000 13.78 0.00 29.99 4.63
1567 1595 3.275143 GCTTAAGGCCTTCTTTCCTCTC 58.725 50.000 24.49 0.00 36.93 3.20
1575 1603 6.665248 AGTTCATTATTTGCTTAAGGCCTTCT 59.335 34.615 24.49 0.27 40.92 2.85
1578 1606 5.951747 TCAGTTCATTATTTGCTTAAGGCCT 59.048 36.000 0.00 0.00 40.92 5.19
1586 1614 8.405418 AGCATCATATCAGTTCATTATTTGCT 57.595 30.769 0.00 0.00 0.00 3.91
1607 3580 5.010282 AGAAAATTCGGTTGGAAGTAGCAT 58.990 37.500 0.00 0.00 38.24 3.79
1630 3603 4.560136 TGCACTTTGTAAAATCGCAGAA 57.440 36.364 0.00 0.00 43.58 3.02
2026 3999 6.544564 ACACTTCTCCTAGATAGACTAGTTGC 59.455 42.308 0.00 0.00 45.01 4.17
2029 4002 7.863722 TGAACACTTCTCCTAGATAGACTAGT 58.136 38.462 0.00 0.00 45.01 2.57
2030 4003 7.990886 ACTGAACACTTCTCCTAGATAGACTAG 59.009 40.741 0.00 0.00 45.77 2.57
2036 4009 5.265191 AGCACTGAACACTTCTCCTAGATA 58.735 41.667 0.00 0.00 0.00 1.98
2044 4017 3.812053 GTCATTGAGCACTGAACACTTCT 59.188 43.478 0.00 0.00 0.00 2.85
2050 4023 1.896220 TGGGTCATTGAGCACTGAAC 58.104 50.000 16.99 0.00 0.00 3.18
2051 4024 2.040145 TCATGGGTCATTGAGCACTGAA 59.960 45.455 16.99 0.00 0.00 3.02
2062 4036 1.221840 GTGCCGACTCATGGGTCAT 59.778 57.895 25.06 0.00 36.12 3.06
2065 4039 1.913262 TCAGTGCCGACTCATGGGT 60.913 57.895 0.00 0.00 0.00 4.51
2066 4040 1.448540 GTCAGTGCCGACTCATGGG 60.449 63.158 0.00 0.00 32.92 4.00
2067 4041 1.448540 GGTCAGTGCCGACTCATGG 60.449 63.158 0.00 0.00 36.12 3.66
2068 4042 1.448540 GGGTCAGTGCCGACTCATG 60.449 63.158 0.00 0.00 36.33 3.07
2069 4043 1.480212 TTGGGTCAGTGCCGACTCAT 61.480 55.000 1.85 0.00 45.63 2.90
2070 4044 2.099652 CTTGGGTCAGTGCCGACTCA 62.100 60.000 0.00 0.00 44.68 3.41
2071 4045 1.374758 CTTGGGTCAGTGCCGACTC 60.375 63.158 0.00 0.00 36.88 3.36
2072 4046 1.194781 ATCTTGGGTCAGTGCCGACT 61.195 55.000 0.00 0.00 36.12 4.18
2073 4047 1.021390 CATCTTGGGTCAGTGCCGAC 61.021 60.000 0.00 0.00 35.03 4.79
2074 4048 1.296392 CATCTTGGGTCAGTGCCGA 59.704 57.895 0.00 0.00 0.00 5.54
2075 4049 2.401766 GCATCTTGGGTCAGTGCCG 61.402 63.158 0.00 0.00 0.00 5.69
2076 4050 1.303561 TGCATCTTGGGTCAGTGCC 60.304 57.895 0.00 0.00 35.03 5.01
2077 4051 1.310933 CCTGCATCTTGGGTCAGTGC 61.311 60.000 0.00 0.00 36.39 4.40
2088 4062 1.272872 ACCATTGCTTTCCCTGCATCT 60.273 47.619 0.00 0.00 40.34 2.90
2092 4066 1.607801 GGGACCATTGCTTTCCCTGC 61.608 60.000 8.34 0.00 45.14 4.85
2111 4085 4.406649 AGTTAATGATTGGGAGGGCAAATG 59.593 41.667 0.00 0.00 0.00 2.32
2120 4094 4.698304 GGTTCGACAAGTTAATGATTGGGA 59.302 41.667 0.00 0.00 0.00 4.37
2131 4105 1.404035 GCAGGTTTGGTTCGACAAGTT 59.596 47.619 0.00 0.00 0.00 2.66
2157 4131 9.268268 ACAGTGACTTATTTCTTCAATTTCGTA 57.732 29.630 0.00 0.00 0.00 3.43
2167 4141 5.244178 AGAGGTCGACAGTGACTTATTTCTT 59.756 40.000 18.91 0.00 38.91 2.52
2238 4212 1.403814 TCGATGCCGATTCCTCTCTT 58.596 50.000 0.00 0.00 40.30 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.