Multiple sequence alignment - TraesCS4A01G106600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G106600 chr4A 100.000 5264 0 0 1 5264 121487491 121492754 0.000000e+00 9721.0
1 TraesCS4A01G106600 chr4A 83.841 1906 231 48 2051 3902 121154727 121156609 0.000000e+00 1742.0
2 TraesCS4A01G106600 chr4A 83.510 473 61 13 1505 1970 121153459 121153921 4.870000e-115 425.0
3 TraesCS4A01G106600 chr4A 81.871 171 27 4 778 945 587204487 587204656 1.980000e-29 141.0
4 TraesCS4A01G106600 chr4A 94.286 35 2 0 4996 5030 433849149 433849183 3.000000e-03 54.7
5 TraesCS4A01G106600 chr4B 95.870 1235 49 2 2859 4092 426143885 426142652 0.000000e+00 1997.0
6 TraesCS4A01G106600 chr4B 83.560 1910 227 52 2051 3901 426471005 426469124 0.000000e+00 1707.0
7 TraesCS4A01G106600 chr4B 84.450 1537 167 40 315 1800 426146687 426145172 0.000000e+00 1448.0
8 TraesCS4A01G106600 chr4B 93.064 692 37 8 2169 2855 426145038 426144353 0.000000e+00 1002.0
9 TraesCS4A01G106600 chr4B 92.899 507 28 3 4136 4642 426142478 426141980 0.000000e+00 730.0
10 TraesCS4A01G106600 chr4B 80.291 893 118 34 1102 1952 426472708 426471832 5.790000e-174 621.0
11 TraesCS4A01G106600 chr4B 93.215 339 22 1 4688 5025 426140035 426139697 1.020000e-136 497.0
12 TraesCS4A01G106600 chr4B 90.164 61 5 1 5164 5224 369482810 369482751 1.570000e-10 78.7
13 TraesCS4A01G106600 chr4B 76.923 143 25 8 766 903 633937420 633937281 2.030000e-09 75.0
14 TraesCS4A01G106600 chr4D 93.111 1350 56 11 2859 4201 344126422 344125103 0.000000e+00 1943.0
15 TraesCS4A01G106600 chr4D 84.260 1906 227 45 2051 3902 344369082 344367196 0.000000e+00 1790.0
16 TraesCS4A01G106600 chr4D 87.843 1094 85 21 1057 2117 344128242 344127164 0.000000e+00 1240.0
17 TraesCS4A01G106600 chr4D 94.220 692 34 5 2169 2855 344127166 344126476 0.000000e+00 1051.0
18 TraesCS4A01G106600 chr4D 87.480 639 61 9 4644 5264 344124640 344124003 0.000000e+00 719.0
19 TraesCS4A01G106600 chr4D 79.295 908 130 35 1102 1962 344370960 344370064 2.730000e-162 582.0
20 TraesCS4A01G106600 chr4D 88.558 437 37 4 4216 4644 344125119 344124688 7.810000e-143 518.0
21 TraesCS4A01G106600 chr4D 81.356 118 22 0 720 837 507964720 507964603 4.340000e-16 97.1
22 TraesCS4A01G106600 chr4D 100.000 28 0 0 4998 5025 210943705 210943678 1.000000e-02 52.8
23 TraesCS4A01G106600 chrUn 97.642 212 5 0 20 231 329809131 329809342 1.080000e-96 364.0
24 TraesCS4A01G106600 chrUn 96.190 210 8 0 20 229 246895490 246895699 1.400000e-90 344.0
25 TraesCS4A01G106600 chr2A 95.755 212 9 0 20 231 769581791 769581580 5.050000e-90 342.0
26 TraesCS4A01G106600 chr2A 79.668 241 41 7 717 950 69268359 69268120 3.260000e-37 167.0
27 TraesCS4A01G106600 chr1A 95.755 212 9 0 20 231 338471537 338471326 5.050000e-90 342.0
28 TraesCS4A01G106600 chr1A 97.000 200 6 0 20 219 421658368 421658567 2.350000e-88 337.0
29 TraesCS4A01G106600 chr1A 94.340 212 12 0 20 231 421694703 421694914 5.080000e-85 326.0
30 TraesCS4A01G106600 chr1A 94.581 203 11 0 29 231 422031658 422031860 1.100000e-81 315.0
31 TraesCS4A01G106600 chr1A 92.958 213 15 0 20 232 338463478 338463266 1.420000e-80 311.0
32 TraesCS4A01G106600 chr1A 91.837 49 4 0 745 793 439303742 439303790 9.460000e-08 69.4
33 TraesCS4A01G106600 chr5A 94.241 191 9 2 20 209 525362546 525362357 1.850000e-74 291.0
34 TraesCS4A01G106600 chr5A 78.378 185 27 5 5092 5264 219831189 219831006 2.000000e-19 108.0
35 TraesCS4A01G106600 chr5A 85.057 87 13 0 5077 5163 509669537 509669623 7.260000e-14 89.8
36 TraesCS4A01G106600 chr7A 79.459 185 34 4 778 960 10273489 10273671 1.540000e-25 128.0
37 TraesCS4A01G106600 chr5D 77.293 229 44 7 702 925 483707834 483708059 1.540000e-25 128.0
38 TraesCS4A01G106600 chr5D 78.395 162 27 7 789 945 218944628 218944786 1.210000e-16 99.0
39 TraesCS4A01G106600 chr3A 78.462 195 36 5 753 945 17733605 17733415 7.160000e-24 122.0
40 TraesCS4A01G106600 chr3D 88.095 84 9 1 5086 5169 55160307 55160389 1.210000e-16 99.0
41 TraesCS4A01G106600 chr2D 76.471 204 35 9 745 944 115623088 115623282 1.210000e-16 99.0
42 TraesCS4A01G106600 chr2D 89.394 66 7 0 5163 5228 600136839 600136774 3.380000e-12 84.2
43 TraesCS4A01G106600 chr2B 72.727 242 41 14 703 941 18793817 18793598 2.050000e-04 58.4
44 TraesCS4A01G106600 chr2B 100.000 30 0 0 912 941 18702629 18702600 7.360000e-04 56.5
45 TraesCS4A01G106600 chr2B 100.000 30 0 0 912 941 18733516 18733487 7.360000e-04 56.5
46 TraesCS4A01G106600 chr2B 100.000 30 0 0 912 941 18766394 18766365 7.360000e-04 56.5
47 TraesCS4A01G106600 chr2B 96.970 33 1 0 5077 5109 379790216 379790184 7.360000e-04 56.5
48 TraesCS4A01G106600 chr2B 100.000 29 0 0 755 783 749415660 749415688 3.000000e-03 54.7
49 TraesCS4A01G106600 chr7D 96.970 33 1 0 4996 5028 623304488 623304456 7.360000e-04 56.5
50 TraesCS4A01G106600 chr7D 100.000 29 0 0 4996 5024 623389632 623389604 3.000000e-03 54.7
51 TraesCS4A01G106600 chr7B 96.970 33 1 0 4998 5030 94700524 94700556 7.360000e-04 56.5
52 TraesCS4A01G106600 chr7B 100.000 29 0 0 4997 5025 193727335 193727363 3.000000e-03 54.7
53 TraesCS4A01G106600 chr7B 96.875 32 1 0 4998 5029 312119872 312119903 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G106600 chr4A 121487491 121492754 5263 False 9721.0 9721 100.0000 1 5264 1 chr4A.!!$F1 5263
1 TraesCS4A01G106600 chr4A 121153459 121156609 3150 False 1083.5 1742 83.6755 1505 3902 2 chr4A.!!$F4 2397
2 TraesCS4A01G106600 chr4B 426469124 426472708 3584 True 1164.0 1707 81.9255 1102 3901 2 chr4B.!!$R4 2799
3 TraesCS4A01G106600 chr4B 426139697 426146687 6990 True 1134.8 1997 91.8996 315 5025 5 chr4B.!!$R3 4710
4 TraesCS4A01G106600 chr4D 344367196 344370960 3764 True 1186.0 1790 81.7775 1102 3902 2 chr4D.!!$R4 2800
5 TraesCS4A01G106600 chr4D 344124003 344128242 4239 True 1094.2 1943 90.2424 1057 5264 5 chr4D.!!$R3 4207

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
257 258 0.037232 GTGGAGCCAAAGACGCTACT 60.037 55.000 0.0 0.0 38.10 2.57 F
972 979 0.107831 ACGGGTGTATGTGCAAGTGT 59.892 50.000 0.0 0.0 0.00 3.55 F
1422 1449 0.874390 TGCGTTACCTCGTAAGTCGT 59.126 50.000 0.0 0.0 40.80 4.34 F
2083 3086 0.546122 TGGCACATATCACCTGTCCC 59.454 55.000 0.0 0.0 0.00 4.46 F
2536 3561 1.000052 GAGAATACTCTGGGCGGTAGC 60.000 57.143 0.0 0.0 39.78 3.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1525 1585 0.684479 ATCCGCACTAGTGAGAGGCA 60.684 55.000 27.08 14.43 31.84 4.75 R
2076 3079 0.905357 AAGGAACGATCAGGGACAGG 59.095 55.000 0.00 0.00 0.00 4.00 R
2614 3639 2.811431 CACTCCACGATTGGCTAACAAA 59.189 45.455 0.00 0.00 43.46 2.83 R
4073 5586 1.459455 TTGTTGACCCCCACAATGCG 61.459 55.000 0.00 0.00 0.00 4.73 R
4525 6175 0.038310 AGGCCAGTAAAGGTTCAGCC 59.962 55.000 5.01 0.00 39.25 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.697425 GTCGTGTGCATAGCAGCG 59.303 61.111 8.83 8.83 40.08 5.18
18 19 3.188100 TCGTGTGCATAGCAGCGC 61.188 61.111 0.00 0.00 40.08 5.92
19 20 3.190849 CGTGTGCATAGCAGCGCT 61.191 61.111 2.64 2.64 44.96 5.92
20 21 2.402388 GTGTGCATAGCAGCGCTG 59.598 61.111 32.83 32.83 44.96 5.18
21 22 2.102438 GTGTGCATAGCAGCGCTGA 61.102 57.895 40.21 21.71 44.96 4.26
22 23 1.153309 TGTGCATAGCAGCGCTGAT 60.153 52.632 40.21 36.38 44.96 2.90
23 24 1.278937 GTGCATAGCAGCGCTGATG 59.721 57.895 40.21 32.34 40.08 3.07
24 25 1.153309 TGCATAGCAGCGCTGATGT 60.153 52.632 40.21 30.39 40.10 3.06
25 26 0.745486 TGCATAGCAGCGCTGATGTT 60.745 50.000 40.21 23.11 40.10 2.71
26 27 0.316772 GCATAGCAGCGCTGATGTTG 60.317 55.000 40.21 32.12 40.10 3.33
27 28 0.306840 CATAGCAGCGCTGATGTTGG 59.693 55.000 40.21 20.52 40.10 3.77
28 29 0.107508 ATAGCAGCGCTGATGTTGGT 60.108 50.000 40.21 20.94 40.10 3.67
29 30 0.321564 TAGCAGCGCTGATGTTGGTT 60.322 50.000 40.21 12.43 40.10 3.67
30 31 0.321564 AGCAGCGCTGATGTTGGTTA 60.322 50.000 40.21 0.00 37.57 2.85
31 32 0.179189 GCAGCGCTGATGTTGGTTAC 60.179 55.000 40.21 14.87 0.00 2.50
32 33 1.155889 CAGCGCTGATGTTGGTTACA 58.844 50.000 33.66 0.00 41.97 2.41
33 34 1.535028 CAGCGCTGATGTTGGTTACAA 59.465 47.619 33.66 0.00 40.89 2.41
49 50 7.447374 TGGTTACAACTGACAATTGATTAGG 57.553 36.000 13.59 0.00 0.00 2.69
50 51 6.432783 TGGTTACAACTGACAATTGATTAGGG 59.567 38.462 13.59 6.60 0.00 3.53
51 52 6.127730 GGTTACAACTGACAATTGATTAGGGG 60.128 42.308 13.59 6.29 0.00 4.79
52 53 5.255397 ACAACTGACAATTGATTAGGGGA 57.745 39.130 13.59 0.00 0.00 4.81
53 54 5.831103 ACAACTGACAATTGATTAGGGGAT 58.169 37.500 13.59 0.00 0.00 3.85
54 55 6.256053 ACAACTGACAATTGATTAGGGGATT 58.744 36.000 13.59 0.00 0.00 3.01
55 56 6.725834 ACAACTGACAATTGATTAGGGGATTT 59.274 34.615 13.59 0.00 0.00 2.17
56 57 7.235399 ACAACTGACAATTGATTAGGGGATTTT 59.765 33.333 13.59 0.00 0.00 1.82
57 58 8.748412 CAACTGACAATTGATTAGGGGATTTTA 58.252 33.333 13.59 0.00 0.00 1.52
58 59 9.492730 AACTGACAATTGATTAGGGGATTTTAT 57.507 29.630 13.59 0.00 0.00 1.40
61 62 9.362151 TGACAATTGATTAGGGGATTTTATACC 57.638 33.333 13.59 0.00 0.00 2.73
62 63 9.362151 GACAATTGATTAGGGGATTTTATACCA 57.638 33.333 13.59 0.00 33.66 3.25
63 64 9.722317 ACAATTGATTAGGGGATTTTATACCAA 57.278 29.630 13.59 0.00 33.66 3.67
69 70 9.908152 GATTAGGGGATTTTATACCAAAATTCG 57.092 33.333 0.00 0.00 33.66 3.34
70 71 9.649316 ATTAGGGGATTTTATACCAAAATTCGA 57.351 29.630 0.00 0.00 33.66 3.71
71 72 7.964666 AGGGGATTTTATACCAAAATTCGAA 57.035 32.000 0.00 0.00 33.66 3.71
72 73 7.778083 AGGGGATTTTATACCAAAATTCGAAC 58.222 34.615 0.00 0.00 33.66 3.95
73 74 7.397761 AGGGGATTTTATACCAAAATTCGAACA 59.602 33.333 0.00 0.00 33.66 3.18
74 75 8.201464 GGGGATTTTATACCAAAATTCGAACAT 58.799 33.333 0.00 0.00 33.66 2.71
75 76 9.594478 GGGATTTTATACCAAAATTCGAACATT 57.406 29.630 0.00 0.00 31.65 2.71
143 144 9.624697 TTAAATTTGAATTCGAGATCAGTTTGG 57.375 29.630 0.00 0.00 0.00 3.28
144 145 7.452880 AATTTGAATTCGAGATCAGTTTGGA 57.547 32.000 0.04 0.00 0.00 3.53
145 146 6.875948 TTTGAATTCGAGATCAGTTTGGAA 57.124 33.333 0.04 0.00 0.00 3.53
146 147 5.862924 TGAATTCGAGATCAGTTTGGAAC 57.137 39.130 0.04 0.00 0.00 3.62
147 148 5.304778 TGAATTCGAGATCAGTTTGGAACA 58.695 37.500 0.04 0.00 0.00 3.18
166 167 8.690203 TGGAACAAAGTGATGATTAGAAAAGA 57.310 30.769 0.00 0.00 31.92 2.52
167 168 9.300681 TGGAACAAAGTGATGATTAGAAAAGAT 57.699 29.630 0.00 0.00 31.92 2.40
187 188 9.807649 AAAAGATTAATTATGATGACTTGGCAC 57.192 29.630 0.00 0.00 0.00 5.01
188 189 7.516198 AGATTAATTATGATGACTTGGCACC 57.484 36.000 0.00 0.00 0.00 5.01
189 190 7.062322 AGATTAATTATGATGACTTGGCACCA 58.938 34.615 0.00 0.00 0.00 4.17
190 191 7.727186 AGATTAATTATGATGACTTGGCACCAT 59.273 33.333 0.00 0.00 0.00 3.55
191 192 7.658525 TTAATTATGATGACTTGGCACCATT 57.341 32.000 0.00 0.00 0.00 3.16
192 193 8.759481 TTAATTATGATGACTTGGCACCATTA 57.241 30.769 0.00 0.00 0.00 1.90
193 194 6.889301 ATTATGATGACTTGGCACCATTAG 57.111 37.500 0.00 0.00 0.00 1.73
194 195 3.719268 TGATGACTTGGCACCATTAGT 57.281 42.857 0.00 0.00 0.00 2.24
195 196 4.835284 TGATGACTTGGCACCATTAGTA 57.165 40.909 0.00 0.00 0.00 1.82
196 197 4.769688 TGATGACTTGGCACCATTAGTAG 58.230 43.478 0.00 0.00 0.00 2.57
197 198 4.469586 TGATGACTTGGCACCATTAGTAGA 59.530 41.667 0.00 0.00 0.00 2.59
198 199 4.471904 TGACTTGGCACCATTAGTAGAG 57.528 45.455 0.00 0.00 0.00 2.43
199 200 3.197766 TGACTTGGCACCATTAGTAGAGG 59.802 47.826 0.00 0.00 0.00 3.69
200 201 3.450904 ACTTGGCACCATTAGTAGAGGA 58.549 45.455 0.00 0.00 0.00 3.71
201 202 4.040755 ACTTGGCACCATTAGTAGAGGAT 58.959 43.478 0.00 0.00 0.00 3.24
202 203 4.475016 ACTTGGCACCATTAGTAGAGGATT 59.525 41.667 0.00 0.00 0.00 3.01
203 204 5.665812 ACTTGGCACCATTAGTAGAGGATTA 59.334 40.000 0.00 0.00 0.00 1.75
204 205 5.546621 TGGCACCATTAGTAGAGGATTAC 57.453 43.478 0.00 0.00 0.00 1.89
205 206 5.216622 TGGCACCATTAGTAGAGGATTACT 58.783 41.667 0.00 0.00 37.61 2.24
206 207 5.070446 TGGCACCATTAGTAGAGGATTACTG 59.930 44.000 0.00 0.00 35.57 2.74
207 208 5.070580 GGCACCATTAGTAGAGGATTACTGT 59.929 44.000 0.00 0.00 35.57 3.55
208 209 6.267014 GGCACCATTAGTAGAGGATTACTGTA 59.733 42.308 0.00 0.00 35.57 2.74
209 210 7.201974 GGCACCATTAGTAGAGGATTACTGTAA 60.202 40.741 2.26 2.26 35.57 2.41
210 211 7.652507 GCACCATTAGTAGAGGATTACTGTAAC 59.347 40.741 1.73 0.00 35.57 2.50
211 212 7.861372 CACCATTAGTAGAGGATTACTGTAACG 59.139 40.741 1.73 0.00 35.57 3.18
212 213 7.559170 ACCATTAGTAGAGGATTACTGTAACGT 59.441 37.037 1.73 0.00 35.57 3.99
213 214 9.060347 CCATTAGTAGAGGATTACTGTAACGTA 57.940 37.037 1.73 0.00 35.57 3.57
221 222 9.674824 AGAGGATTACTGTAACGTAATTATTCG 57.325 33.333 1.73 0.00 39.49 3.34
222 223 8.807667 AGGATTACTGTAACGTAATTATTCGG 57.192 34.615 1.73 0.00 39.49 4.30
223 224 7.869429 AGGATTACTGTAACGTAATTATTCGGG 59.131 37.037 1.73 0.00 39.49 5.14
224 225 6.826893 TTACTGTAACGTAATTATTCGGGC 57.173 37.500 0.00 0.00 0.00 6.13
225 226 3.798337 ACTGTAACGTAATTATTCGGGCG 59.202 43.478 0.00 0.00 0.00 6.13
226 227 3.779759 TGTAACGTAATTATTCGGGCGT 58.220 40.909 0.00 0.00 0.00 5.68
227 228 3.796178 TGTAACGTAATTATTCGGGCGTC 59.204 43.478 0.00 0.00 0.00 5.19
228 229 2.582728 ACGTAATTATTCGGGCGTCA 57.417 45.000 0.00 0.00 0.00 4.35
229 230 2.195922 ACGTAATTATTCGGGCGTCAC 58.804 47.619 0.00 0.00 0.00 3.67
230 231 2.195096 CGTAATTATTCGGGCGTCACA 58.805 47.619 0.00 0.00 0.00 3.58
231 232 2.798283 CGTAATTATTCGGGCGTCACAT 59.202 45.455 0.00 0.00 0.00 3.21
232 233 3.246699 CGTAATTATTCGGGCGTCACATT 59.753 43.478 0.00 0.00 0.00 2.71
233 234 4.445052 CGTAATTATTCGGGCGTCACATTA 59.555 41.667 0.00 0.00 0.00 1.90
234 235 5.050904 CGTAATTATTCGGGCGTCACATTAA 60.051 40.000 0.00 0.00 0.00 1.40
235 236 4.806342 ATTATTCGGGCGTCACATTAAC 57.194 40.909 0.00 0.00 0.00 2.01
236 237 2.102070 ATTCGGGCGTCACATTAACA 57.898 45.000 0.00 0.00 0.00 2.41
237 238 2.102070 TTCGGGCGTCACATTAACAT 57.898 45.000 0.00 0.00 0.00 2.71
238 239 1.364721 TCGGGCGTCACATTAACATG 58.635 50.000 0.00 0.00 36.34 3.21
239 240 1.083489 CGGGCGTCACATTAACATGT 58.917 50.000 0.00 0.00 45.18 3.21
249 250 4.789012 ACATTAACATGTGGAGCCAAAG 57.211 40.909 0.00 0.00 42.46 2.77
250 251 4.406456 ACATTAACATGTGGAGCCAAAGA 58.594 39.130 0.00 0.00 42.46 2.52
251 252 4.218417 ACATTAACATGTGGAGCCAAAGAC 59.782 41.667 0.00 0.00 42.46 3.01
252 253 1.238439 AACATGTGGAGCCAAAGACG 58.762 50.000 0.00 0.00 0.00 4.18
253 254 1.237285 ACATGTGGAGCCAAAGACGC 61.237 55.000 0.00 0.00 0.00 5.19
254 255 0.957395 CATGTGGAGCCAAAGACGCT 60.957 55.000 0.00 0.00 39.95 5.07
255 256 0.613260 ATGTGGAGCCAAAGACGCTA 59.387 50.000 0.00 0.00 36.48 4.26
256 257 0.320421 TGTGGAGCCAAAGACGCTAC 60.320 55.000 0.00 0.00 36.48 3.58
257 258 0.037232 GTGGAGCCAAAGACGCTACT 60.037 55.000 0.00 0.00 38.10 2.57
258 259 0.685097 TGGAGCCAAAGACGCTACTT 59.315 50.000 0.00 0.00 38.10 2.24
259 260 1.079503 GGAGCCAAAGACGCTACTTG 58.920 55.000 0.00 0.00 36.48 3.16
260 261 1.079503 GAGCCAAAGACGCTACTTGG 58.920 55.000 6.15 6.15 36.48 3.61
261 262 0.685097 AGCCAAAGACGCTACTTGGA 59.315 50.000 11.92 0.00 33.91 3.53
262 263 1.279271 AGCCAAAGACGCTACTTGGAT 59.721 47.619 11.92 5.37 33.91 3.41
263 264 1.666189 GCCAAAGACGCTACTTGGATC 59.334 52.381 11.92 0.00 0.00 3.36
264 265 2.280628 CCAAAGACGCTACTTGGATCC 58.719 52.381 4.20 4.20 0.00 3.36
265 266 2.093447 CCAAAGACGCTACTTGGATCCT 60.093 50.000 14.23 0.00 0.00 3.24
266 267 3.132289 CCAAAGACGCTACTTGGATCCTA 59.868 47.826 14.23 4.17 0.00 2.94
267 268 4.363999 CAAAGACGCTACTTGGATCCTAG 58.636 47.826 20.10 20.10 0.00 3.02
268 269 1.957877 AGACGCTACTTGGATCCTAGC 59.042 52.381 21.40 19.32 0.00 3.42
269 270 1.681793 GACGCTACTTGGATCCTAGCA 59.318 52.381 23.87 12.67 33.78 3.49
270 271 2.100916 GACGCTACTTGGATCCTAGCAA 59.899 50.000 23.87 13.13 33.78 3.91
271 272 2.700897 ACGCTACTTGGATCCTAGCAAT 59.299 45.455 23.87 13.08 33.78 3.56
272 273 3.134804 ACGCTACTTGGATCCTAGCAATT 59.865 43.478 23.87 9.82 33.78 2.32
273 274 4.130118 CGCTACTTGGATCCTAGCAATTT 58.870 43.478 23.87 9.52 33.78 1.82
274 275 4.024556 CGCTACTTGGATCCTAGCAATTTG 60.025 45.833 23.87 9.40 33.78 2.32
275 276 5.126067 GCTACTTGGATCCTAGCAATTTGA 58.874 41.667 21.40 0.19 34.24 2.69
276 277 5.238214 GCTACTTGGATCCTAGCAATTTGAG 59.762 44.000 21.40 9.43 34.24 3.02
277 278 5.441718 ACTTGGATCCTAGCAATTTGAGA 57.558 39.130 21.40 0.00 0.00 3.27
278 279 6.011122 ACTTGGATCCTAGCAATTTGAGAT 57.989 37.500 21.40 0.00 0.00 2.75
279 280 5.826737 ACTTGGATCCTAGCAATTTGAGATG 59.173 40.000 21.40 0.00 0.00 2.90
280 281 5.635278 TGGATCCTAGCAATTTGAGATGA 57.365 39.130 14.23 0.00 0.00 2.92
281 282 6.196918 TGGATCCTAGCAATTTGAGATGAT 57.803 37.500 14.23 0.00 0.00 2.45
282 283 6.607970 TGGATCCTAGCAATTTGAGATGATT 58.392 36.000 14.23 0.00 0.00 2.57
283 284 6.489022 TGGATCCTAGCAATTTGAGATGATTG 59.511 38.462 14.23 0.00 36.56 2.67
284 285 6.713903 GGATCCTAGCAATTTGAGATGATTGA 59.286 38.462 3.84 0.00 35.74 2.57
285 286 7.393796 GGATCCTAGCAATTTGAGATGATTGAT 59.606 37.037 3.84 0.00 35.74 2.57
286 287 7.741027 TCCTAGCAATTTGAGATGATTGATC 57.259 36.000 0.00 0.00 35.74 2.92
287 288 7.515586 TCCTAGCAATTTGAGATGATTGATCT 58.484 34.615 0.00 0.00 44.78 2.75
288 289 8.654094 TCCTAGCAATTTGAGATGATTGATCTA 58.346 33.333 0.00 0.00 41.91 1.98
289 290 9.281371 CCTAGCAATTTGAGATGATTGATCTAA 57.719 33.333 0.00 0.00 41.91 2.10
302 303 9.905171 GATGATTGATCTAAATTTTTAGGAGGC 57.095 33.333 9.56 0.00 40.35 4.70
303 304 8.821686 TGATTGATCTAAATTTTTAGGAGGCA 57.178 30.769 9.56 2.29 40.35 4.75
304 305 8.686334 TGATTGATCTAAATTTTTAGGAGGCAC 58.314 33.333 9.56 0.00 40.35 5.01
305 306 6.677781 TGATCTAAATTTTTAGGAGGCACG 57.322 37.500 9.56 0.00 40.35 5.34
306 307 6.411376 TGATCTAAATTTTTAGGAGGCACGA 58.589 36.000 9.56 0.00 40.35 4.35
307 308 6.882140 TGATCTAAATTTTTAGGAGGCACGAA 59.118 34.615 9.56 0.00 40.35 3.85
308 309 7.392113 TGATCTAAATTTTTAGGAGGCACGAAA 59.608 33.333 9.56 0.00 40.35 3.46
309 310 7.141100 TCTAAATTTTTAGGAGGCACGAAAG 57.859 36.000 9.56 0.00 40.35 2.62
310 311 4.783764 AATTTTTAGGAGGCACGAAAGG 57.216 40.909 0.00 0.00 0.00 3.11
311 312 1.530323 TTTTAGGAGGCACGAAAGGC 58.470 50.000 0.00 0.00 0.00 4.35
312 313 9.905275 CTAAATTTTTAGGAGGCACGAAAGGCC 62.905 44.444 0.00 0.00 42.44 5.19
319 320 2.482326 GCACGAAAGGCCTTATGCT 58.518 52.632 29.06 13.41 40.92 3.79
320 321 1.663695 GCACGAAAGGCCTTATGCTA 58.336 50.000 29.06 0.00 40.92 3.49
321 322 1.330829 GCACGAAAGGCCTTATGCTAC 59.669 52.381 29.06 13.11 40.92 3.58
322 323 1.940613 CACGAAAGGCCTTATGCTACC 59.059 52.381 20.84 1.54 40.92 3.18
323 324 1.557832 ACGAAAGGCCTTATGCTACCA 59.442 47.619 20.84 0.00 40.92 3.25
324 325 2.026636 ACGAAAGGCCTTATGCTACCAA 60.027 45.455 20.84 0.00 40.92 3.67
325 326 2.354821 CGAAAGGCCTTATGCTACCAAC 59.645 50.000 20.84 0.01 40.92 3.77
326 327 3.352648 GAAAGGCCTTATGCTACCAACA 58.647 45.455 20.84 0.00 40.92 3.33
377 378 0.603569 TCGAAGTCCTCTGCTTGGTC 59.396 55.000 0.00 0.00 0.00 4.02
387 388 3.065655 CTCTGCTTGGTCTGAACTCTTG 58.934 50.000 0.00 0.00 0.00 3.02
390 391 3.470709 TGCTTGGTCTGAACTCTTGAAG 58.529 45.455 0.00 0.00 0.00 3.02
397 398 5.994054 TGGTCTGAACTCTTGAAGATTCTTG 59.006 40.000 3.03 9.54 0.00 3.02
401 402 5.319453 TGAACTCTTGAAGATTCTTGCCAT 58.681 37.500 3.03 0.00 0.00 4.40
412 413 6.661304 AGATTCTTGCCATTGAAAAGAAGT 57.339 33.333 14.79 6.46 41.74 3.01
421 422 7.092079 TGCCATTGAAAAGAAGTGAATATGTG 58.908 34.615 0.00 0.00 0.00 3.21
444 445 8.094548 TGTGATATAGGTAACCATGTTCATAGC 58.905 37.037 0.00 0.00 37.17 2.97
471 472 4.855340 TCCACCCACTTATGAGAAAATCC 58.145 43.478 0.00 0.00 0.00 3.01
475 476 7.062957 CCACCCACTTATGAGAAAATCCTAAT 58.937 38.462 0.00 0.00 0.00 1.73
511 512 5.071788 AGTTCTCAAGTAATCCCACTCAACA 59.928 40.000 0.00 0.00 0.00 3.33
512 513 4.894784 TCTCAAGTAATCCCACTCAACAC 58.105 43.478 0.00 0.00 0.00 3.32
518 523 3.795688 AATCCCACTCAACACTGTCAT 57.204 42.857 0.00 0.00 0.00 3.06
519 524 4.908601 AATCCCACTCAACACTGTCATA 57.091 40.909 0.00 0.00 0.00 2.15
522 527 2.303022 CCCACTCAACACTGTCATAGGT 59.697 50.000 0.00 0.00 0.00 3.08
533 538 5.188555 ACACTGTCATAGGTCTTCATCATGT 59.811 40.000 0.00 0.00 0.00 3.21
535 540 7.093333 ACACTGTCATAGGTCTTCATCATGTTA 60.093 37.037 0.00 0.00 0.00 2.41
538 543 8.667076 TGTCATAGGTCTTCATCATGTTAATG 57.333 34.615 0.00 0.00 34.88 1.90
550 555 5.963176 TCATGTTAATGTTGAGTGCACAT 57.037 34.783 21.04 3.82 35.15 3.21
553 558 5.764487 TGTTAATGTTGAGTGCACATTGA 57.236 34.783 21.04 3.48 35.87 2.57
567 572 3.795101 GCACATTGATGATGCTTAACTGC 59.205 43.478 0.00 0.00 39.47 4.40
568 573 4.439700 GCACATTGATGATGCTTAACTGCT 60.440 41.667 0.00 0.00 39.47 4.24
572 577 7.919091 CACATTGATGATGCTTAACTGCTTTAT 59.081 33.333 0.00 0.00 39.47 1.40
575 580 7.395190 TGATGATGCTTAACTGCTTTATTGT 57.605 32.000 0.00 0.00 0.00 2.71
580 585 5.460646 TGCTTAACTGCTTTATTGTGCTTC 58.539 37.500 0.00 0.00 0.00 3.86
588 593 6.430925 ACTGCTTTATTGTGCTTCATGAAGTA 59.569 34.615 30.88 26.15 40.45 2.24
589 594 7.040478 ACTGCTTTATTGTGCTTCATGAAGTAA 60.040 33.333 30.88 23.65 40.45 2.24
602 607 9.713740 GCTTCATGAAGTAAAGACATTCATAAG 57.286 33.333 30.88 5.76 40.71 1.73
635 640 8.749841 AATATTATTAAAAACGCAAGCACACA 57.250 26.923 0.00 0.00 45.62 3.72
636 641 8.925161 ATATTATTAAAAACGCAAGCACACAT 57.075 26.923 0.00 0.00 45.62 3.21
637 642 4.970472 ATTAAAAACGCAAGCACACATG 57.030 36.364 0.00 0.00 45.62 3.21
700 707 8.288689 GGATACCCAACACATATAAAACAAGT 57.711 34.615 0.00 0.00 0.00 3.16
705 712 6.866248 CCCAACACATATAAAACAAGTGAACC 59.134 38.462 0.00 0.00 34.47 3.62
709 716 6.021596 CACATATAAAACAAGTGAACCGAGC 58.978 40.000 0.00 0.00 32.14 5.03
713 720 9.256477 CATATAAAACAAGTGAACCGAGCTATA 57.744 33.333 0.00 0.00 0.00 1.31
715 722 3.521947 ACAAGTGAACCGAGCTATACC 57.478 47.619 0.00 0.00 0.00 2.73
737 744 6.694445 CCCAGATGGTTAGATTCCTTCTAT 57.306 41.667 0.00 0.00 37.36 1.98
783 790 3.322254 AGTTCTAGACTTGACACTGGTGG 59.678 47.826 5.70 0.00 33.92 4.61
787 794 2.050144 AGACTTGACACTGGTGGTCAT 58.950 47.619 5.70 0.00 44.11 3.06
796 803 5.473162 TGACACTGGTGGTCATATTTTTCTG 59.527 40.000 5.70 0.00 40.16 3.02
797 804 5.630121 ACACTGGTGGTCATATTTTTCTGA 58.370 37.500 5.70 0.00 34.19 3.27
818 825 4.518970 TGAATTTATTTCAGGCTATCCGGC 59.481 41.667 0.00 0.00 39.44 6.13
823 830 2.715532 TTCAGGCTATCCGGCGATGC 62.716 60.000 9.30 6.65 44.22 3.91
837 844 1.796796 GATGCGCTTTCAGTGGGAC 59.203 57.895 9.73 0.00 0.00 4.46
847 854 1.004918 CAGTGGGACAGACGTTCCC 60.005 63.158 15.73 15.73 40.63 3.97
848 855 2.048503 GTGGGACAGACGTTCCCG 60.049 66.667 17.10 0.00 46.43 5.14
857 864 4.331356 ACGTTCCCGTCAACTTCG 57.669 55.556 0.00 0.00 46.28 3.79
858 865 1.735360 ACGTTCCCGTCAACTTCGA 59.265 52.632 0.00 0.00 46.28 3.71
862 869 0.599204 TTCCCGTCAACTTCGAGTGC 60.599 55.000 0.00 0.00 0.00 4.40
864 871 0.670546 CCCGTCAACTTCGAGTGCAT 60.671 55.000 0.00 0.00 0.00 3.96
865 872 0.716108 CCGTCAACTTCGAGTGCATC 59.284 55.000 0.00 0.00 0.00 3.91
866 873 0.716108 CGTCAACTTCGAGTGCATCC 59.284 55.000 0.00 0.00 0.00 3.51
867 874 0.716108 GTCAACTTCGAGTGCATCCG 59.284 55.000 0.00 0.00 0.00 4.18
868 875 0.317160 TCAACTTCGAGTGCATCCGT 59.683 50.000 9.87 0.00 0.00 4.69
869 876 0.439985 CAACTTCGAGTGCATCCGTG 59.560 55.000 9.87 7.42 0.00 4.94
870 877 0.670546 AACTTCGAGTGCATCCGTGG 60.671 55.000 9.87 7.14 0.00 4.94
883 890 3.267483 CATCCGTGGGACTTCGTTAATT 58.733 45.455 0.00 0.00 32.98 1.40
885 892 3.742385 TCCGTGGGACTTCGTTAATTTT 58.258 40.909 0.00 0.00 0.00 1.82
888 895 5.409214 TCCGTGGGACTTCGTTAATTTTAAG 59.591 40.000 0.00 0.00 0.00 1.85
906 913 3.895232 AAGATGATGTGTCGGCTTAGT 57.105 42.857 0.00 0.00 0.00 2.24
916 923 2.693591 TGTCGGCTTAGTATCTTGGAGG 59.306 50.000 0.00 0.00 0.00 4.30
928 935 5.663106 AGTATCTTGGAGGTGCTCATAAAGA 59.337 40.000 0.00 0.00 33.70 2.52
931 938 6.166984 TCTTGGAGGTGCTCATAAAGATAG 57.833 41.667 0.00 0.00 31.08 2.08
933 940 3.648067 TGGAGGTGCTCATAAAGATAGGG 59.352 47.826 0.00 0.00 31.08 3.53
939 946 3.199727 TGCTCATAAAGATAGGGTGTGCA 59.800 43.478 0.00 0.00 37.08 4.57
942 949 5.371526 CTCATAAAGATAGGGTGTGCATGT 58.628 41.667 0.00 0.00 0.00 3.21
947 954 2.305635 AGATAGGGTGTGCATGTGTTCA 59.694 45.455 0.00 0.00 0.00 3.18
950 957 2.436417 AGGGTGTGCATGTGTTCATAC 58.564 47.619 0.00 0.00 32.47 2.39
951 958 2.158559 GGGTGTGCATGTGTTCATACA 58.841 47.619 0.00 0.00 32.47 2.29
952 959 2.556189 GGGTGTGCATGTGTTCATACAA 59.444 45.455 0.00 0.00 35.69 2.41
953 960 3.005261 GGGTGTGCATGTGTTCATACAAA 59.995 43.478 0.00 0.00 35.69 2.83
954 961 3.980775 GGTGTGCATGTGTTCATACAAAC 59.019 43.478 0.00 0.00 35.75 2.93
956 963 3.233578 GTGCATGTGTTCATACAAACGG 58.766 45.455 0.00 0.00 35.69 4.44
957 964 2.227626 TGCATGTGTTCATACAAACGGG 59.772 45.455 0.00 0.00 35.69 5.28
959 966 3.820689 CATGTGTTCATACAAACGGGTG 58.179 45.455 0.00 0.00 35.69 4.61
967 974 2.545537 TACAAACGGGTGTATGTGCA 57.454 45.000 0.00 0.00 32.75 4.57
968 975 1.681538 ACAAACGGGTGTATGTGCAA 58.318 45.000 0.00 0.00 0.00 4.08
969 976 1.606668 ACAAACGGGTGTATGTGCAAG 59.393 47.619 0.00 0.00 0.00 4.01
972 979 0.107831 ACGGGTGTATGTGCAAGTGT 59.892 50.000 0.00 0.00 0.00 3.55
1099 1116 6.802834 ACACGCAACTTAAAATTATAAACCCG 59.197 34.615 0.00 0.00 0.00 5.28
1110 1127 1.665137 ATAAACCCGACCACCTCCTT 58.335 50.000 0.00 0.00 0.00 3.36
1170 1188 4.806339 CCCCTCGGCTCCCCTTCT 62.806 72.222 0.00 0.00 0.00 2.85
1175 1193 3.009115 CGGCTCCCCTTCTTCCCA 61.009 66.667 0.00 0.00 0.00 4.37
1182 1200 2.586792 CCTTCTTCCCAGCCCGAG 59.413 66.667 0.00 0.00 0.00 4.63
1382 1409 4.070552 GTCGCGGACAGCCCTCTT 62.071 66.667 6.13 0.00 44.76 2.85
1422 1449 0.874390 TGCGTTACCTCGTAAGTCGT 59.126 50.000 0.00 0.00 40.80 4.34
1424 1451 1.135972 GCGTTACCTCGTAAGTCGTCA 60.136 52.381 0.00 0.00 40.80 4.35
1465 1498 5.163744 CCGATCTCTAGTCGTTCTTTTCTGA 60.164 44.000 1.21 0.00 37.39 3.27
1625 1688 4.172505 GTGTGTTGTTTCAGTTCATTGCA 58.827 39.130 0.00 0.00 0.00 4.08
1659 1727 4.261741 CCTGCTTGTGTATGTGCTCTTTTT 60.262 41.667 0.00 0.00 0.00 1.94
1662 1730 4.466828 CTTGTGTATGTGCTCTTTTTCGG 58.533 43.478 0.00 0.00 0.00 4.30
1767 1835 2.360350 CATTGCCAGACCGTGCCT 60.360 61.111 0.00 0.00 0.00 4.75
1827 1895 1.550524 GATCCTTTTTGGGGCCTGTTC 59.449 52.381 0.84 0.00 36.20 3.18
1830 1898 1.413118 CTTTTTGGGGCCTGTTCAGT 58.587 50.000 0.84 0.00 0.00 3.41
1843 1913 5.414454 GGCCTGTTCAGTTATGTTTGTATGA 59.586 40.000 0.00 0.00 0.00 2.15
1850 1920 8.638565 GTTCAGTTATGTTTGTATGATGTTTGC 58.361 33.333 0.00 0.00 0.00 3.68
1878 1948 5.620417 GCAGTGTGTTACGCGTTTTATTTTA 59.380 36.000 20.78 0.00 33.01 1.52
1952 2030 5.633996 TGTTTGTCGCATGAAATTTGTTC 57.366 34.783 0.00 0.00 0.00 3.18
1964 2042 4.021544 TGAAATTTGTTCGAGGATTTGGGG 60.022 41.667 0.00 0.00 0.00 4.96
1965 2043 1.917872 TTTGTTCGAGGATTTGGGGG 58.082 50.000 0.00 0.00 0.00 5.40
1985 2824 3.054655 GGGTTTTCACAGAGCTGGGTATA 60.055 47.826 0.00 0.00 35.03 1.47
2029 3031 3.311106 CAGTATGCCAGTTTTGCACAAG 58.689 45.455 0.00 0.00 42.38 3.16
2030 3032 3.004629 CAGTATGCCAGTTTTGCACAAGA 59.995 43.478 0.00 0.00 42.38 3.02
2033 3035 3.540314 TGCCAGTTTTGCACAAGAAAT 57.460 38.095 0.00 0.00 32.85 2.17
2034 3036 4.662468 TGCCAGTTTTGCACAAGAAATA 57.338 36.364 0.00 0.00 32.85 1.40
2035 3037 4.367450 TGCCAGTTTTGCACAAGAAATAC 58.633 39.130 0.00 0.00 32.85 1.89
2036 3038 3.425193 GCCAGTTTTGCACAAGAAATACG 59.575 43.478 0.00 0.00 0.00 3.06
2076 3079 4.342862 ACCTATCACTGGCACATATCAC 57.657 45.455 0.00 0.00 38.20 3.06
2083 3086 0.546122 TGGCACATATCACCTGTCCC 59.454 55.000 0.00 0.00 0.00 4.46
2085 3088 1.475751 GGCACATATCACCTGTCCCTG 60.476 57.143 0.00 0.00 0.00 4.45
2140 3149 6.855836 TCATTTGGTCATTCATTTCTACTGC 58.144 36.000 0.00 0.00 0.00 4.40
2142 3151 5.885230 TTGGTCATTCATTTCTACTGCAG 57.115 39.130 13.48 13.48 0.00 4.41
2144 3153 4.696877 TGGTCATTCATTTCTACTGCAGTG 59.303 41.667 29.57 18.26 0.00 3.66
2152 3161 6.338146 TCATTTCTACTGCAGTGTATGTACC 58.662 40.000 29.57 0.00 0.00 3.34
2154 3163 3.028850 TCTACTGCAGTGTATGTACCCC 58.971 50.000 29.57 0.00 0.00 4.95
2157 3168 2.290071 ACTGCAGTGTATGTACCCCAAC 60.290 50.000 20.97 0.00 0.00 3.77
2164 3175 6.768861 GCAGTGTATGTACCCCAACAATTATA 59.231 38.462 0.00 0.00 32.02 0.98
2272 3293 7.594015 GTCAAAGATCGTAAGTTGACTCTACAA 59.406 37.037 15.70 0.00 42.75 2.41
2279 3300 5.220043 CGTAAGTTGACTCTACAAATGCTCG 60.220 44.000 0.00 0.00 0.00 5.03
2285 3306 4.631377 TGACTCTACAAATGCTCGAAATGG 59.369 41.667 0.00 0.00 0.00 3.16
2377 3402 9.571810 GAGTAGATCAGAGCATTTCTATATGTG 57.428 37.037 0.00 0.00 33.83 3.21
2385 3410 7.924947 CAGAGCATTTCTATATGTGTCTCTTCA 59.075 37.037 0.00 0.00 33.83 3.02
2438 3463 7.367285 GTCTTTGTGGTACAAGCAAATGAATA 58.633 34.615 8.46 0.00 44.16 1.75
2479 3504 3.719871 TCTGGTCCTTTATCAGGCTGTA 58.280 45.455 15.27 3.59 43.55 2.74
2536 3561 1.000052 GAGAATACTCTGGGCGGTAGC 60.000 57.143 0.00 0.00 39.78 3.58
2570 3595 7.013083 GGAACTATGACCTTCTACTTCGTCATA 59.987 40.741 8.12 8.12 42.61 2.15
2614 3639 1.959085 CCTTGCAGTTCGGCATTGT 59.041 52.632 0.00 0.00 44.48 2.71
2685 3711 2.441750 GCCATCCCCAGGTAAACATCTA 59.558 50.000 0.00 0.00 0.00 1.98
2765 3792 9.804977 ATTATTTTATATTCTCAGGCTCTTGCT 57.195 29.630 0.00 0.00 39.59 3.91
2856 3883 4.397103 CAGCAAAGGTAGAATGATGCTTCA 59.603 41.667 4.57 4.57 41.82 3.02
2857 3884 5.012239 AGCAAAGGTAGAATGATGCTTCAA 58.988 37.500 6.36 0.00 40.99 2.69
2898 4391 6.233430 AGTTGATGAATTTCAAGTGACTCG 57.767 37.500 2.68 0.00 37.76 4.18
2914 4407 6.455647 AGTGACTCGTCAAGTGAAATCATTA 58.544 36.000 0.64 0.00 41.85 1.90
2930 4423 9.119418 TGAAATCATTATCATTAACCATGACGT 57.881 29.630 0.00 0.00 45.12 4.34
2983 4476 4.012374 CAAATGCTCCAAGATACTGGTGT 58.988 43.478 0.00 0.00 37.74 4.16
3163 4660 2.351418 CGTTTTATGATGCTTGCTCGGA 59.649 45.455 0.00 0.00 0.00 4.55
3204 4701 7.122650 CAGGTTGATAAACCATTCAAGGTACAT 59.877 37.037 14.82 0.00 45.23 2.29
3384 4887 1.522668 TTTTGCACTGAGGGACATCG 58.477 50.000 0.00 0.00 0.00 3.84
3567 5071 5.011125 AGTCAGATAACAATCCTATGACCGG 59.989 44.000 0.00 0.00 36.99 5.28
3675 5179 8.657712 AGGTACTTCAACTACCTCTTTTATGTT 58.342 33.333 0.00 0.00 40.05 2.71
3736 5240 2.162408 GCTCTTGGAAATTTGGAGGTCG 59.838 50.000 0.00 0.00 0.00 4.79
3786 5291 5.529430 TCAAGCGAAAGGTGACTCATTTTAA 59.471 36.000 0.00 0.00 42.68 1.52
3876 5382 2.886523 TGAATAACAAGTGCTTGCTGCT 59.113 40.909 11.43 0.00 44.03 4.24
3949 5455 3.198200 AGTCAGAAAGATGCAGCTCTCAT 59.802 43.478 8.21 0.00 0.00 2.90
3985 5491 3.094484 TGGATTGGGATTTAAGCGGTT 57.906 42.857 4.76 4.76 0.00 4.44
3991 5497 6.319405 GGATTGGGATTTAAGCGGTTTTACTA 59.681 38.462 4.64 0.00 0.00 1.82
4006 5512 7.118245 GCGGTTTTACTAATAAACTGTACCTGT 59.882 37.037 0.00 0.00 41.64 4.00
4049 5562 4.466370 CAGATGTACTCAGGTTGGGTAGAA 59.534 45.833 0.00 0.00 33.30 2.10
4050 5563 4.466726 AGATGTACTCAGGTTGGGTAGAAC 59.533 45.833 0.00 0.00 33.30 3.01
4051 5564 3.578978 TGTACTCAGGTTGGGTAGAACA 58.421 45.455 0.00 0.00 33.30 3.18
4052 5565 4.164981 TGTACTCAGGTTGGGTAGAACAT 58.835 43.478 0.00 0.00 33.30 2.71
4053 5566 5.335261 TGTACTCAGGTTGGGTAGAACATA 58.665 41.667 0.00 0.00 33.30 2.29
4054 5567 5.421056 TGTACTCAGGTTGGGTAGAACATAG 59.579 44.000 0.00 0.00 33.30 2.23
4055 5568 3.197983 ACTCAGGTTGGGTAGAACATAGC 59.802 47.826 0.00 0.00 0.00 2.97
4059 5572 4.161565 CAGGTTGGGTAGAACATAGCACTA 59.838 45.833 0.00 0.00 0.00 2.74
4073 5586 8.934507 AACATAGCACTAGAATTCTGAACTAC 57.065 34.615 18.47 2.95 0.00 2.73
4101 5614 4.289934 TGTGGGGGTCAACAAAGTGATATA 59.710 41.667 0.00 0.00 0.00 0.86
4119 5632 6.321181 GTGATATATGGTGATTTTGTGGGTGT 59.679 38.462 0.00 0.00 0.00 4.16
4123 5636 1.754226 GGTGATTTTGTGGGTGTGTGT 59.246 47.619 0.00 0.00 0.00 3.72
4125 5638 1.753649 TGATTTTGTGGGTGTGTGTGG 59.246 47.619 0.00 0.00 0.00 4.17
4128 5641 1.864263 TTTGTGGGTGTGTGTGGGGA 61.864 55.000 0.00 0.00 0.00 4.81
4138 5781 1.346395 GTGTGTGGGGATACTGTCACA 59.654 52.381 0.00 0.00 38.72 3.58
4183 5826 5.462068 CGAAACTTCTTCAAAATTCCCCAAC 59.538 40.000 0.00 0.00 0.00 3.77
4204 5847 2.235570 GCCCTTCTAGAATGGCCCT 58.764 57.895 31.05 0.00 43.49 5.19
4238 5881 1.777272 CCCTTCTAGGATGGGGAAAGG 59.223 57.143 9.76 2.60 41.60 3.11
4341 5984 1.238625 GGTTTTCGTTCATGGGCCGA 61.239 55.000 0.00 0.00 0.00 5.54
4344 5987 2.437518 TTTCGTTCATGGGCCGACGA 62.438 55.000 16.62 16.62 42.08 4.20
4359 6002 0.743345 GACGATGGTTCCCCTTTCCG 60.743 60.000 0.00 0.00 0.00 4.30
4378 6021 0.657368 GTTTCAAAGCCTGTGTCGCG 60.657 55.000 0.00 0.00 0.00 5.87
4397 6040 1.722464 CGAATACTCGGCACAACGAAA 59.278 47.619 0.00 0.00 42.98 3.46
4460 6110 0.110486 AGACAAACCGCCTCCAATGT 59.890 50.000 0.00 0.00 0.00 2.71
4486 6136 4.272748 GGACGCCTAAAGTAATGGAATGAC 59.727 45.833 0.00 0.00 0.00 3.06
4505 6155 2.426023 GAAGGCGTCACTGTGGGT 59.574 61.111 8.11 0.00 0.00 4.51
4510 6160 2.251642 GCGTCACTGTGGGTGTTCC 61.252 63.158 8.11 0.00 45.50 3.62
4523 6173 2.007608 GGTGTTCCGGCAGTTCTAATC 58.992 52.381 0.00 0.00 0.00 1.75
4524 6174 2.354805 GGTGTTCCGGCAGTTCTAATCT 60.355 50.000 0.00 0.00 0.00 2.40
4525 6175 2.673368 GTGTTCCGGCAGTTCTAATCTG 59.327 50.000 0.00 0.00 36.18 2.90
4541 6191 2.859165 TCTGGCTGAACCTTTACTGG 57.141 50.000 0.00 0.00 40.22 4.00
4717 8266 0.883833 GTGGAGGCATTGTTCTGTGG 59.116 55.000 0.00 0.00 0.00 4.17
4739 8288 1.589716 GGCGAAACATTCCAGCTGCT 61.590 55.000 8.66 0.00 0.00 4.24
4807 8361 3.943381 TGTGCTCATGATCACTTGATTCC 59.057 43.478 25.44 2.61 34.37 3.01
4813 8368 5.541845 TCATGATCACTTGATTCCGTATCC 58.458 41.667 0.00 0.00 34.37 2.59
4817 8372 4.137116 TCACTTGATTCCGTATCCCTTG 57.863 45.455 0.00 0.00 31.87 3.61
4829 8384 4.566070 CCGTATCCCTTGGGTTGTTCTTTA 60.566 45.833 5.51 0.00 0.00 1.85
4832 8387 4.733077 TCCCTTGGGTTGTTCTTTATCA 57.267 40.909 5.51 0.00 0.00 2.15
4883 8438 2.103373 GCCCATATCTCTCGATGGCTA 58.897 52.381 0.00 0.00 41.22 3.93
5005 8560 0.469917 AGGATGAACGCCCATAGTGG 59.530 55.000 0.00 0.00 37.25 4.00
5025 8580 5.182760 AGTGGGAGTAACTTCAGTAGTAACG 59.817 44.000 0.00 0.00 35.54 3.18
5026 8581 5.048434 GTGGGAGTAACTTCAGTAGTAACGT 60.048 44.000 0.00 0.00 35.54 3.99
5028 8583 6.714810 TGGGAGTAACTTCAGTAGTAACGTAA 59.285 38.462 0.00 0.00 35.54 3.18
5029 8584 7.094634 TGGGAGTAACTTCAGTAGTAACGTAAG 60.095 40.741 0.00 0.00 39.12 2.34
5030 8585 7.119846 GGGAGTAACTTCAGTAGTAACGTAAGA 59.880 40.741 0.00 0.00 37.04 2.10
5031 8586 8.507249 GGAGTAACTTCAGTAGTAACGTAAGAA 58.493 37.037 0.00 0.00 37.04 2.52
5046 8613 6.210287 ACGTAAGAATTTAGTGAGGAGAGG 57.790 41.667 0.00 0.00 43.62 3.69
5094 8661 0.322456 CCATCTTCAAGGCGAACCCA 60.322 55.000 0.00 0.00 36.11 4.51
5111 8678 0.034477 CCATAAACCTCCCGCAACCT 60.034 55.000 0.00 0.00 0.00 3.50
5114 8681 1.061546 TAAACCTCCCGCAACCTTCT 58.938 50.000 0.00 0.00 0.00 2.85
5116 8683 2.747855 CCTCCCGCAACCTTCTGC 60.748 66.667 0.00 0.00 39.04 4.26
5118 8685 1.377725 CTCCCGCAACCTTCTGCAT 60.378 57.895 0.00 0.00 42.77 3.96
5126 8693 0.884704 AACCTTCTGCATCGCGTTGT 60.885 50.000 17.75 0.00 0.00 3.32
5127 8694 1.291877 ACCTTCTGCATCGCGTTGTC 61.292 55.000 17.75 10.90 0.00 3.18
5133 8700 2.126071 CATCGCGTTGTCCGGACT 60.126 61.111 33.39 10.38 36.94 3.85
5156 8723 1.896220 GAAGCCATCCAACACTGACA 58.104 50.000 0.00 0.00 0.00 3.58
5196 8763 5.172411 GCGATTTCTCTCGTAAATCAGAGAC 59.828 44.000 8.71 0.00 43.95 3.36
5209 8776 0.324943 CAGAGACAAACGTGGGGGAT 59.675 55.000 0.00 0.00 0.00 3.85
5216 8783 1.801309 AAACGTGGGGGATGTTTGCG 61.801 55.000 0.00 0.00 41.41 4.85
5224 8791 1.002624 GGATGTTTGCGGGAGTCCA 60.003 57.895 12.30 0.00 0.00 4.02
5233 8800 4.688770 GGGAGTCCAGACCGATCT 57.311 61.111 12.30 0.00 34.57 2.75
5237 8804 1.135333 GGAGTCCAGACCGATCTCAAC 59.865 57.143 3.60 0.00 30.42 3.18
5239 8806 0.175989 GTCCAGACCGATCTCAACCC 59.824 60.000 0.00 0.00 30.42 4.11
5240 8807 0.976073 TCCAGACCGATCTCAACCCC 60.976 60.000 0.00 0.00 30.42 4.95
5241 8808 1.264749 CCAGACCGATCTCAACCCCA 61.265 60.000 0.00 0.00 30.42 4.96
5242 8809 0.176680 CAGACCGATCTCAACCCCAG 59.823 60.000 0.00 0.00 30.42 4.45
5246 8813 1.003233 ACCGATCTCAACCCCAGTTTC 59.997 52.381 0.00 0.00 32.45 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.697425 CGCTGCTATGCACACGAC 59.303 61.111 0.00 0.00 35.80 4.34
1 2 3.188100 GCGCTGCTATGCACACGA 61.188 61.111 0.00 0.00 35.80 4.35
2 3 3.190849 AGCGCTGCTATGCACACG 61.191 61.111 10.39 6.04 36.99 4.49
5 6 1.278937 CATCAGCGCTGCTATGCAC 59.721 57.895 32.44 0.00 36.40 4.57
6 7 0.745486 AACATCAGCGCTGCTATGCA 60.745 50.000 32.44 14.85 36.40 3.96
7 8 0.316772 CAACATCAGCGCTGCTATGC 60.317 55.000 32.44 0.00 36.40 3.14
10 11 0.321564 AACCAACATCAGCGCTGCTA 60.322 50.000 32.44 17.30 36.40 3.49
11 12 0.321564 TAACCAACATCAGCGCTGCT 60.322 50.000 32.44 21.36 40.77 4.24
12 13 0.179189 GTAACCAACATCAGCGCTGC 60.179 55.000 32.44 10.53 0.00 5.25
13 14 1.155889 TGTAACCAACATCAGCGCTG 58.844 50.000 31.53 31.53 31.43 5.18
14 15 1.890876 TTGTAACCAACATCAGCGCT 58.109 45.000 2.64 2.64 38.10 5.92
24 25 7.040062 CCCTAATCAATTGTCAGTTGTAACCAA 60.040 37.037 5.13 0.00 0.00 3.67
25 26 6.432783 CCCTAATCAATTGTCAGTTGTAACCA 59.567 38.462 5.13 0.00 0.00 3.67
26 27 6.127730 CCCCTAATCAATTGTCAGTTGTAACC 60.128 42.308 5.13 0.00 0.00 2.85
27 28 6.657541 TCCCCTAATCAATTGTCAGTTGTAAC 59.342 38.462 5.13 0.00 0.00 2.50
28 29 6.785076 TCCCCTAATCAATTGTCAGTTGTAA 58.215 36.000 5.13 0.00 0.00 2.41
29 30 6.381498 TCCCCTAATCAATTGTCAGTTGTA 57.619 37.500 5.13 0.00 0.00 2.41
30 31 5.255397 TCCCCTAATCAATTGTCAGTTGT 57.745 39.130 5.13 0.00 0.00 3.32
31 32 6.780457 AATCCCCTAATCAATTGTCAGTTG 57.220 37.500 5.13 1.75 0.00 3.16
32 33 7.797121 AAAATCCCCTAATCAATTGTCAGTT 57.203 32.000 5.13 0.08 0.00 3.16
35 36 9.362151 GGTATAAAATCCCCTAATCAATTGTCA 57.638 33.333 5.13 0.00 0.00 3.58
36 37 9.362151 TGGTATAAAATCCCCTAATCAATTGTC 57.638 33.333 5.13 0.00 0.00 3.18
37 38 9.722317 TTGGTATAAAATCCCCTAATCAATTGT 57.278 29.630 5.13 0.00 0.00 2.71
43 44 9.908152 CGAATTTTGGTATAAAATCCCCTAATC 57.092 33.333 0.00 0.00 0.00 1.75
44 45 9.649316 TCGAATTTTGGTATAAAATCCCCTAAT 57.351 29.630 0.00 0.00 0.00 1.73
45 46 9.476928 TTCGAATTTTGGTATAAAATCCCCTAA 57.523 29.630 0.00 0.00 0.00 2.69
46 47 8.905850 GTTCGAATTTTGGTATAAAATCCCCTA 58.094 33.333 0.00 0.00 0.00 3.53
47 48 7.397761 TGTTCGAATTTTGGTATAAAATCCCCT 59.602 33.333 0.00 0.00 0.00 4.79
48 49 7.548967 TGTTCGAATTTTGGTATAAAATCCCC 58.451 34.615 0.00 0.00 0.00 4.81
49 50 9.594478 AATGTTCGAATTTTGGTATAAAATCCC 57.406 29.630 0.00 0.00 0.00 3.85
117 118 9.624697 CCAAACTGATCTCGAATTCAAATTTAA 57.375 29.630 6.22 0.00 0.00 1.52
118 119 9.008965 TCCAAACTGATCTCGAATTCAAATTTA 57.991 29.630 6.22 0.00 0.00 1.40
119 120 7.885297 TCCAAACTGATCTCGAATTCAAATTT 58.115 30.769 6.22 0.00 0.00 1.82
120 121 7.452880 TCCAAACTGATCTCGAATTCAAATT 57.547 32.000 6.22 0.00 0.00 1.82
121 122 7.040478 TGTTCCAAACTGATCTCGAATTCAAAT 60.040 33.333 6.22 0.00 0.00 2.32
122 123 6.262049 TGTTCCAAACTGATCTCGAATTCAAA 59.738 34.615 6.22 0.00 0.00 2.69
123 124 5.762711 TGTTCCAAACTGATCTCGAATTCAA 59.237 36.000 6.22 0.00 0.00 2.69
124 125 5.304778 TGTTCCAAACTGATCTCGAATTCA 58.695 37.500 6.22 0.00 0.00 2.57
125 126 5.862924 TGTTCCAAACTGATCTCGAATTC 57.137 39.130 0.00 0.00 0.00 2.17
126 127 6.263168 ACTTTGTTCCAAACTGATCTCGAATT 59.737 34.615 0.00 0.00 0.00 2.17
127 128 5.765182 ACTTTGTTCCAAACTGATCTCGAAT 59.235 36.000 0.00 0.00 0.00 3.34
128 129 5.007626 CACTTTGTTCCAAACTGATCTCGAA 59.992 40.000 0.00 0.00 0.00 3.71
129 130 4.511454 CACTTTGTTCCAAACTGATCTCGA 59.489 41.667 0.00 0.00 0.00 4.04
130 131 4.511454 TCACTTTGTTCCAAACTGATCTCG 59.489 41.667 0.00 0.00 0.00 4.04
131 132 6.205464 TCATCACTTTGTTCCAAACTGATCTC 59.795 38.462 8.12 0.00 0.00 2.75
132 133 6.064060 TCATCACTTTGTTCCAAACTGATCT 58.936 36.000 8.12 0.00 0.00 2.75
133 134 6.317789 TCATCACTTTGTTCCAAACTGATC 57.682 37.500 8.12 0.00 0.00 2.92
134 135 6.906157 ATCATCACTTTGTTCCAAACTGAT 57.094 33.333 6.21 6.21 0.00 2.90
135 136 6.713762 AATCATCACTTTGTTCCAAACTGA 57.286 33.333 0.00 0.00 0.00 3.41
136 137 7.874940 TCTAATCATCACTTTGTTCCAAACTG 58.125 34.615 0.00 0.00 0.00 3.16
137 138 8.463930 TTCTAATCATCACTTTGTTCCAAACT 57.536 30.769 0.00 0.00 0.00 2.66
138 139 9.528018 TTTTCTAATCATCACTTTGTTCCAAAC 57.472 29.630 0.00 0.00 0.00 2.93
139 140 9.748708 CTTTTCTAATCATCACTTTGTTCCAAA 57.251 29.630 0.00 0.00 0.00 3.28
140 141 9.130661 TCTTTTCTAATCATCACTTTGTTCCAA 57.869 29.630 0.00 0.00 0.00 3.53
141 142 8.690203 TCTTTTCTAATCATCACTTTGTTCCA 57.310 30.769 0.00 0.00 0.00 3.53
161 162 9.807649 GTGCCAAGTCATCATAATTAATCTTTT 57.192 29.630 0.00 0.00 0.00 2.27
162 163 8.416329 GGTGCCAAGTCATCATAATTAATCTTT 58.584 33.333 0.00 0.00 0.00 2.52
163 164 7.560991 TGGTGCCAAGTCATCATAATTAATCTT 59.439 33.333 0.00 0.00 0.00 2.40
164 165 7.062322 TGGTGCCAAGTCATCATAATTAATCT 58.938 34.615 0.00 0.00 0.00 2.40
165 166 7.275888 TGGTGCCAAGTCATCATAATTAATC 57.724 36.000 0.00 0.00 0.00 1.75
166 167 7.844493 ATGGTGCCAAGTCATCATAATTAAT 57.156 32.000 0.00 0.00 36.13 1.40
167 168 7.658525 AATGGTGCCAAGTCATCATAATTAA 57.341 32.000 0.00 0.00 36.83 1.40
168 169 7.998383 ACTAATGGTGCCAAGTCATCATAATTA 59.002 33.333 0.00 0.00 36.83 1.40
169 170 6.835488 ACTAATGGTGCCAAGTCATCATAATT 59.165 34.615 0.00 0.00 36.83 1.40
170 171 6.367983 ACTAATGGTGCCAAGTCATCATAAT 58.632 36.000 0.00 0.00 36.83 1.28
171 172 5.754782 ACTAATGGTGCCAAGTCATCATAA 58.245 37.500 0.00 0.00 36.83 1.90
172 173 5.372343 ACTAATGGTGCCAAGTCATCATA 57.628 39.130 0.00 0.00 36.83 2.15
173 174 4.240881 ACTAATGGTGCCAAGTCATCAT 57.759 40.909 0.00 0.00 39.32 2.45
174 175 3.719268 ACTAATGGTGCCAAGTCATCA 57.281 42.857 0.00 0.00 0.00 3.07
175 176 5.023533 TCTACTAATGGTGCCAAGTCATC 57.976 43.478 0.00 0.00 0.00 2.92
176 177 4.141620 CCTCTACTAATGGTGCCAAGTCAT 60.142 45.833 0.00 0.00 0.00 3.06
177 178 3.197766 CCTCTACTAATGGTGCCAAGTCA 59.802 47.826 0.00 0.00 0.00 3.41
178 179 3.451178 TCCTCTACTAATGGTGCCAAGTC 59.549 47.826 0.00 0.00 0.00 3.01
179 180 3.450904 TCCTCTACTAATGGTGCCAAGT 58.549 45.455 0.00 0.00 0.00 3.16
180 181 4.696479 ATCCTCTACTAATGGTGCCAAG 57.304 45.455 0.00 0.00 0.00 3.61
181 182 5.665812 AGTAATCCTCTACTAATGGTGCCAA 59.334 40.000 0.00 0.00 30.13 4.52
182 183 5.070446 CAGTAATCCTCTACTAATGGTGCCA 59.930 44.000 0.00 0.00 30.77 4.92
183 184 5.070580 ACAGTAATCCTCTACTAATGGTGCC 59.929 44.000 0.00 0.00 30.77 5.01
184 185 6.163135 ACAGTAATCCTCTACTAATGGTGC 57.837 41.667 0.00 0.00 30.77 5.01
185 186 7.861372 CGTTACAGTAATCCTCTACTAATGGTG 59.139 40.741 0.00 0.00 30.77 4.17
186 187 7.559170 ACGTTACAGTAATCCTCTACTAATGGT 59.441 37.037 0.00 0.00 30.77 3.55
187 188 7.938715 ACGTTACAGTAATCCTCTACTAATGG 58.061 38.462 0.00 0.00 30.77 3.16
195 196 9.674824 CGAATAATTACGTTACAGTAATCCTCT 57.325 33.333 0.00 2.39 43.99 3.69
196 197 8.909671 CCGAATAATTACGTTACAGTAATCCTC 58.090 37.037 0.00 8.27 43.99 3.71
197 198 7.869429 CCCGAATAATTACGTTACAGTAATCCT 59.131 37.037 0.00 3.12 43.99 3.24
198 199 7.359514 GCCCGAATAATTACGTTACAGTAATCC 60.360 40.741 0.00 0.00 43.99 3.01
199 200 7.504818 GCCCGAATAATTACGTTACAGTAATC 58.495 38.462 0.00 2.76 43.99 1.75
200 201 6.144402 CGCCCGAATAATTACGTTACAGTAAT 59.856 38.462 0.00 6.72 45.96 1.89
201 202 5.458452 CGCCCGAATAATTACGTTACAGTAA 59.542 40.000 0.00 0.00 40.38 2.24
202 203 4.975502 CGCCCGAATAATTACGTTACAGTA 59.024 41.667 0.00 0.00 0.00 2.74
203 204 3.798337 CGCCCGAATAATTACGTTACAGT 59.202 43.478 0.00 0.00 0.00 3.55
204 205 3.798337 ACGCCCGAATAATTACGTTACAG 59.202 43.478 0.00 0.00 0.00 2.74
205 206 3.779759 ACGCCCGAATAATTACGTTACA 58.220 40.909 0.00 0.00 0.00 2.41
206 207 3.796178 TGACGCCCGAATAATTACGTTAC 59.204 43.478 0.00 0.00 33.31 2.50
207 208 3.796178 GTGACGCCCGAATAATTACGTTA 59.204 43.478 0.00 0.00 33.31 3.18
208 209 2.604462 GTGACGCCCGAATAATTACGTT 59.396 45.455 0.00 0.00 33.31 3.99
209 210 2.195922 GTGACGCCCGAATAATTACGT 58.804 47.619 0.00 0.00 36.30 3.57
210 211 2.195096 TGTGACGCCCGAATAATTACG 58.805 47.619 0.00 0.00 0.00 3.18
211 212 4.806342 AATGTGACGCCCGAATAATTAC 57.194 40.909 0.00 0.00 0.00 1.89
212 213 5.816258 TGTTAATGTGACGCCCGAATAATTA 59.184 36.000 0.00 0.00 0.00 1.40
213 214 4.636648 TGTTAATGTGACGCCCGAATAATT 59.363 37.500 0.00 0.00 0.00 1.40
214 215 4.193090 TGTTAATGTGACGCCCGAATAAT 58.807 39.130 0.00 0.00 0.00 1.28
215 216 3.597255 TGTTAATGTGACGCCCGAATAA 58.403 40.909 0.00 0.00 0.00 1.40
216 217 3.248495 TGTTAATGTGACGCCCGAATA 57.752 42.857 0.00 0.00 0.00 1.75
217 218 2.102070 TGTTAATGTGACGCCCGAAT 57.898 45.000 0.00 0.00 0.00 3.34
218 219 1.735018 CATGTTAATGTGACGCCCGAA 59.265 47.619 0.00 0.00 0.00 4.30
219 220 1.338294 ACATGTTAATGTGACGCCCGA 60.338 47.619 0.00 0.00 45.51 5.14
220 221 1.083489 ACATGTTAATGTGACGCCCG 58.917 50.000 0.00 0.00 45.51 6.13
229 230 4.672542 CGTCTTTGGCTCCACATGTTAATG 60.673 45.833 0.00 0.00 39.89 1.90
230 231 3.440173 CGTCTTTGGCTCCACATGTTAAT 59.560 43.478 0.00 0.00 0.00 1.40
231 232 2.811431 CGTCTTTGGCTCCACATGTTAA 59.189 45.455 0.00 0.00 0.00 2.01
232 233 2.422597 CGTCTTTGGCTCCACATGTTA 58.577 47.619 0.00 0.00 0.00 2.41
233 234 1.238439 CGTCTTTGGCTCCACATGTT 58.762 50.000 0.00 0.00 0.00 2.71
234 235 1.237285 GCGTCTTTGGCTCCACATGT 61.237 55.000 0.00 0.00 0.00 3.21
235 236 0.957395 AGCGTCTTTGGCTCCACATG 60.957 55.000 0.00 0.00 35.37 3.21
236 237 0.613260 TAGCGTCTTTGGCTCCACAT 59.387 50.000 0.00 0.00 41.80 3.21
237 238 0.320421 GTAGCGTCTTTGGCTCCACA 60.320 55.000 0.00 0.00 41.80 4.17
238 239 0.037232 AGTAGCGTCTTTGGCTCCAC 60.037 55.000 0.00 0.00 41.80 4.02
239 240 0.685097 AAGTAGCGTCTTTGGCTCCA 59.315 50.000 0.00 0.00 41.80 3.86
240 241 1.079503 CAAGTAGCGTCTTTGGCTCC 58.920 55.000 0.00 0.00 41.80 4.70
241 242 1.079503 CCAAGTAGCGTCTTTGGCTC 58.920 55.000 0.00 0.00 41.80 4.70
242 243 0.685097 TCCAAGTAGCGTCTTTGGCT 59.315 50.000 7.25 0.00 44.35 4.75
243 244 1.666189 GATCCAAGTAGCGTCTTTGGC 59.334 52.381 7.25 0.00 0.00 4.52
244 245 2.093447 AGGATCCAAGTAGCGTCTTTGG 60.093 50.000 15.82 6.12 0.00 3.28
245 246 3.252974 AGGATCCAAGTAGCGTCTTTG 57.747 47.619 15.82 0.00 0.00 2.77
246 247 3.181474 GCTAGGATCCAAGTAGCGTCTTT 60.181 47.826 15.82 0.00 30.50 2.52
247 248 2.362717 GCTAGGATCCAAGTAGCGTCTT 59.637 50.000 15.82 0.00 30.50 3.01
248 249 1.957877 GCTAGGATCCAAGTAGCGTCT 59.042 52.381 15.82 0.00 30.50 4.18
249 250 1.681793 TGCTAGGATCCAAGTAGCGTC 59.318 52.381 20.65 2.70 41.81 5.19
250 251 1.776662 TGCTAGGATCCAAGTAGCGT 58.223 50.000 20.65 0.00 41.81 5.07
251 252 2.890808 TTGCTAGGATCCAAGTAGCG 57.109 50.000 20.65 2.07 41.81 4.26
252 253 5.126067 TCAAATTGCTAGGATCCAAGTAGC 58.874 41.667 19.75 19.75 39.76 3.58
253 254 6.586344 TCTCAAATTGCTAGGATCCAAGTAG 58.414 40.000 15.82 8.32 0.00 2.57
254 255 6.560003 TCTCAAATTGCTAGGATCCAAGTA 57.440 37.500 15.82 0.00 0.00 2.24
255 256 5.441718 TCTCAAATTGCTAGGATCCAAGT 57.558 39.130 15.82 0.00 0.00 3.16
256 257 6.060136 TCATCTCAAATTGCTAGGATCCAAG 58.940 40.000 15.82 0.00 0.00 3.61
257 258 6.005066 TCATCTCAAATTGCTAGGATCCAA 57.995 37.500 15.82 0.00 0.00 3.53
258 259 5.635278 TCATCTCAAATTGCTAGGATCCA 57.365 39.130 15.82 0.00 0.00 3.41
259 260 6.713903 TCAATCATCTCAAATTGCTAGGATCC 59.286 38.462 2.48 2.48 33.76 3.36
260 261 7.741027 TCAATCATCTCAAATTGCTAGGATC 57.259 36.000 0.00 0.00 33.76 3.36
261 262 8.164733 AGATCAATCATCTCAAATTGCTAGGAT 58.835 33.333 0.00 0.00 37.24 3.24
262 263 7.515586 AGATCAATCATCTCAAATTGCTAGGA 58.484 34.615 0.00 0.00 37.24 2.94
263 264 7.747155 AGATCAATCATCTCAAATTGCTAGG 57.253 36.000 0.00 0.00 37.24 3.02
276 277 9.905171 GCCTCCTAAAAATTTAGATCAATCATC 57.095 33.333 13.22 0.00 42.05 2.92
277 278 9.425248 TGCCTCCTAAAAATTTAGATCAATCAT 57.575 29.630 13.22 0.00 42.05 2.45
278 279 8.686334 GTGCCTCCTAAAAATTTAGATCAATCA 58.314 33.333 13.22 2.90 42.05 2.57
279 280 7.857885 CGTGCCTCCTAAAAATTTAGATCAATC 59.142 37.037 13.22 1.69 42.05 2.67
280 281 7.556275 TCGTGCCTCCTAAAAATTTAGATCAAT 59.444 33.333 13.22 0.00 42.05 2.57
281 282 6.882140 TCGTGCCTCCTAAAAATTTAGATCAA 59.118 34.615 13.22 0.00 42.05 2.57
282 283 6.411376 TCGTGCCTCCTAAAAATTTAGATCA 58.589 36.000 13.22 4.27 42.05 2.92
283 284 6.920569 TCGTGCCTCCTAAAAATTTAGATC 57.079 37.500 13.22 0.00 42.05 2.75
284 285 7.148069 CCTTTCGTGCCTCCTAAAAATTTAGAT 60.148 37.037 13.22 0.00 42.05 1.98
285 286 6.150474 CCTTTCGTGCCTCCTAAAAATTTAGA 59.850 38.462 13.22 1.29 42.05 2.10
286 287 6.322491 CCTTTCGTGCCTCCTAAAAATTTAG 58.678 40.000 6.04 6.04 39.80 1.85
287 288 5.336134 GCCTTTCGTGCCTCCTAAAAATTTA 60.336 40.000 0.00 0.00 0.00 1.40
288 289 4.560716 GCCTTTCGTGCCTCCTAAAAATTT 60.561 41.667 0.00 0.00 0.00 1.82
289 290 3.056821 GCCTTTCGTGCCTCCTAAAAATT 60.057 43.478 0.00 0.00 0.00 1.82
290 291 2.492088 GCCTTTCGTGCCTCCTAAAAAT 59.508 45.455 0.00 0.00 0.00 1.82
291 292 1.883926 GCCTTTCGTGCCTCCTAAAAA 59.116 47.619 0.00 0.00 0.00 1.94
292 293 1.530323 GCCTTTCGTGCCTCCTAAAA 58.470 50.000 0.00 0.00 0.00 1.52
293 294 0.322187 GGCCTTTCGTGCCTCCTAAA 60.322 55.000 0.00 0.00 45.70 1.85
294 295 1.298667 GGCCTTTCGTGCCTCCTAA 59.701 57.895 0.00 0.00 45.70 2.69
295 296 2.987125 GGCCTTTCGTGCCTCCTA 59.013 61.111 0.00 0.00 45.70 2.94
301 302 1.330829 GTAGCATAAGGCCTTTCGTGC 59.669 52.381 28.71 28.71 46.50 5.34
302 303 1.940613 GGTAGCATAAGGCCTTTCGTG 59.059 52.381 26.08 20.15 46.50 4.35
303 304 1.557832 TGGTAGCATAAGGCCTTTCGT 59.442 47.619 26.08 7.66 46.50 3.85
304 305 2.325583 TGGTAGCATAAGGCCTTTCG 57.674 50.000 26.08 16.20 46.50 3.46
305 306 3.352648 TGTTGGTAGCATAAGGCCTTTC 58.647 45.455 26.08 13.35 46.50 2.62
306 307 3.449746 TGTTGGTAGCATAAGGCCTTT 57.550 42.857 26.08 8.15 46.50 3.11
307 308 3.449746 TTGTTGGTAGCATAAGGCCTT 57.550 42.857 24.18 24.18 46.50 4.35
308 309 3.449746 TTTGTTGGTAGCATAAGGCCT 57.550 42.857 0.00 0.00 46.50 5.19
309 310 4.529109 TTTTTGTTGGTAGCATAAGGCC 57.471 40.909 0.00 0.00 46.50 5.19
310 311 6.127451 ACCTATTTTTGTTGGTAGCATAAGGC 60.127 38.462 0.00 0.00 45.30 4.35
311 312 7.404671 ACCTATTTTTGTTGGTAGCATAAGG 57.595 36.000 0.00 0.00 0.00 2.69
313 314 8.962679 CCTTACCTATTTTTGTTGGTAGCATAA 58.037 33.333 0.00 0.00 36.55 1.90
314 315 7.558444 CCCTTACCTATTTTTGTTGGTAGCATA 59.442 37.037 0.00 0.00 36.55 3.14
315 316 6.379988 CCCTTACCTATTTTTGTTGGTAGCAT 59.620 38.462 0.00 0.00 36.55 3.79
316 317 5.712917 CCCTTACCTATTTTTGTTGGTAGCA 59.287 40.000 0.00 0.00 36.55 3.49
317 318 5.947566 TCCCTTACCTATTTTTGTTGGTAGC 59.052 40.000 0.00 0.00 36.55 3.58
318 319 8.411991 TTTCCCTTACCTATTTTTGTTGGTAG 57.588 34.615 0.00 0.00 36.55 3.18
319 320 8.779096 TTTTCCCTTACCTATTTTTGTTGGTA 57.221 30.769 0.00 0.00 34.33 3.25
320 321 7.678207 TTTTCCCTTACCTATTTTTGTTGGT 57.322 32.000 0.00 0.00 36.66 3.67
321 322 9.869757 CTATTTTCCCTTACCTATTTTTGTTGG 57.130 33.333 0.00 0.00 0.00 3.77
322 323 9.869757 CCTATTTTCCCTTACCTATTTTTGTTG 57.130 33.333 0.00 0.00 0.00 3.33
323 324 9.831682 TCCTATTTTCCCTTACCTATTTTTGTT 57.168 29.630 0.00 0.00 0.00 2.83
351 352 0.969894 CAGAGGACTTCGACAAGGGT 59.030 55.000 0.00 0.00 33.37 4.34
377 378 4.758674 TGGCAAGAATCTTCAAGAGTTCAG 59.241 41.667 10.41 5.61 0.00 3.02
387 388 7.115947 CACTTCTTTTCAATGGCAAGAATCTTC 59.884 37.037 6.58 0.00 36.26 2.87
390 391 6.449698 TCACTTCTTTTCAATGGCAAGAATC 58.550 36.000 6.58 0.00 36.26 2.52
397 398 7.315142 TCACATATTCACTTCTTTTCAATGGC 58.685 34.615 0.00 0.00 0.00 4.40
421 422 9.672673 ATTGCTATGAACATGGTTACCTATATC 57.327 33.333 2.07 0.00 0.00 1.63
425 426 7.284489 GGAAATTGCTATGAACATGGTTACCTA 59.716 37.037 2.07 0.00 0.00 3.08
428 429 6.751888 GTGGAAATTGCTATGAACATGGTTAC 59.248 38.462 0.00 0.00 0.00 2.50
436 437 3.763897 AGTGGGTGGAAATTGCTATGAAC 59.236 43.478 0.00 0.00 0.00 3.18
443 444 4.016444 TCTCATAAGTGGGTGGAAATTGC 58.984 43.478 0.00 0.00 0.00 3.56
444 445 6.588719 TTTCTCATAAGTGGGTGGAAATTG 57.411 37.500 0.00 0.00 0.00 2.32
488 489 5.179555 GTGTTGAGTGGGATTACTTGAGAAC 59.820 44.000 0.00 0.00 0.00 3.01
489 490 5.071788 AGTGTTGAGTGGGATTACTTGAGAA 59.928 40.000 0.00 0.00 0.00 2.87
497 498 4.908601 ATGACAGTGTTGAGTGGGATTA 57.091 40.909 0.00 0.00 0.00 1.75
511 512 5.946942 ACATGATGAAGACCTATGACAGT 57.053 39.130 0.00 0.00 0.00 3.55
512 513 8.771766 CATTAACATGATGAAGACCTATGACAG 58.228 37.037 0.00 0.00 31.07 3.51
518 523 8.321353 ACTCAACATTAACATGATGAAGACCTA 58.679 33.333 0.00 0.00 40.59 3.08
519 524 7.120285 CACTCAACATTAACATGATGAAGACCT 59.880 37.037 0.00 0.00 40.59 3.85
522 527 6.430616 TGCACTCAACATTAACATGATGAAGA 59.569 34.615 0.00 0.00 40.59 2.87
533 538 6.572167 TCATCAATGTGCACTCAACATTAA 57.428 33.333 19.41 0.00 33.36 1.40
535 540 5.407502 CATCATCAATGTGCACTCAACATT 58.592 37.500 19.41 6.02 34.79 2.71
538 543 3.119602 AGCATCATCAATGTGCACTCAAC 60.120 43.478 19.41 0.00 37.32 3.18
550 555 7.756272 CACAATAAAGCAGTTAAGCATCATCAA 59.244 33.333 0.00 0.00 36.85 2.57
553 558 6.038356 GCACAATAAAGCAGTTAAGCATCAT 58.962 36.000 0.00 0.00 36.85 2.45
567 572 9.334693 GTCTTTACTTCATGAAGCACAATAAAG 57.665 33.333 28.75 28.75 41.99 1.85
568 573 8.845227 TGTCTTTACTTCATGAAGCACAATAAA 58.155 29.630 30.95 24.03 41.99 1.40
572 577 6.882610 ATGTCTTTACTTCATGAAGCACAA 57.117 33.333 30.95 20.47 41.99 3.33
575 580 7.692460 ATGAATGTCTTTACTTCATGAAGCA 57.308 32.000 30.95 19.03 41.99 3.91
611 616 8.806634 CATGTGTGCTTGCGTTTTTAATAATAT 58.193 29.630 0.00 0.00 0.00 1.28
696 703 2.167693 TGGGTATAGCTCGGTTCACTTG 59.832 50.000 1.32 0.00 0.00 3.16
700 707 2.447408 TCTGGGTATAGCTCGGTTCA 57.553 50.000 1.32 0.00 0.00 3.18
713 720 5.538877 TAGAAGGAATCTAACCATCTGGGT 58.461 41.667 0.54 0.00 45.80 4.51
715 722 6.939163 CCAATAGAAGGAATCTAACCATCTGG 59.061 42.308 0.00 0.00 43.73 3.86
730 737 6.939163 CCTGATAGGTTGATTCCAATAGAAGG 59.061 42.308 0.00 0.00 38.07 3.46
731 738 6.939163 CCCTGATAGGTTGATTCCAATAGAAG 59.061 42.308 0.00 0.00 33.42 2.85
734 741 6.192970 ACCCTGATAGGTTGATTCCAATAG 57.807 41.667 0.00 0.00 36.44 1.73
746 753 5.422650 GTCTAGAACTTGAACCCTGATAGGT 59.577 44.000 0.00 0.00 44.00 3.08
748 755 6.783708 AGTCTAGAACTTGAACCCTGATAG 57.216 41.667 0.00 0.00 33.03 2.08
773 780 5.705441 TCAGAAAAATATGACCACCAGTGTC 59.295 40.000 0.00 0.00 0.00 3.67
775 782 6.573664 TTCAGAAAAATATGACCACCAGTG 57.426 37.500 0.00 0.00 0.00 3.66
796 803 4.378459 CGCCGGATAGCCTGAAATAAATTC 60.378 45.833 5.05 0.00 38.60 2.17
797 804 3.502211 CGCCGGATAGCCTGAAATAAATT 59.498 43.478 5.05 0.00 0.00 1.82
818 825 1.741401 TCCCACTGAAAGCGCATCG 60.741 57.895 11.47 6.82 37.60 3.84
823 830 1.284982 CGTCTGTCCCACTGAAAGCG 61.285 60.000 0.00 0.00 37.60 4.68
826 833 1.202604 GGAACGTCTGTCCCACTGAAA 60.203 52.381 0.00 0.00 0.00 2.69
829 836 1.004918 GGGAACGTCTGTCCCACTG 60.005 63.158 17.35 0.00 43.06 3.66
847 854 0.716108 GGATGCACTCGAAGTTGACG 59.284 55.000 0.00 0.00 0.00 4.35
848 855 0.716108 CGGATGCACTCGAAGTTGAC 59.284 55.000 4.72 0.00 0.00 3.18
849 856 0.317160 ACGGATGCACTCGAAGTTGA 59.683 50.000 15.97 0.00 0.00 3.18
850 857 0.439985 CACGGATGCACTCGAAGTTG 59.560 55.000 15.97 1.90 0.00 3.16
852 859 1.079819 CCACGGATGCACTCGAAGT 60.080 57.895 15.97 2.38 0.00 3.01
853 860 1.811266 CCCACGGATGCACTCGAAG 60.811 63.158 15.97 8.52 0.00 3.79
855 862 2.678580 TCCCACGGATGCACTCGA 60.679 61.111 15.97 0.00 0.00 4.04
856 863 2.507110 AAGTCCCACGGATGCACTCG 62.507 60.000 8.70 8.70 32.73 4.18
857 864 0.741221 GAAGTCCCACGGATGCACTC 60.741 60.000 0.00 0.00 32.73 3.51
858 865 1.296715 GAAGTCCCACGGATGCACT 59.703 57.895 0.00 0.00 32.73 4.40
862 869 2.373540 TTAACGAAGTCCCACGGATG 57.626 50.000 0.00 0.00 45.00 3.51
864 871 3.405823 AAATTAACGAAGTCCCACGGA 57.594 42.857 0.00 0.00 45.00 4.69
865 872 5.409214 TCTTAAAATTAACGAAGTCCCACGG 59.591 40.000 0.00 0.00 45.00 4.94
866 873 6.470557 TCTTAAAATTAACGAAGTCCCACG 57.529 37.500 0.00 0.00 45.00 4.94
867 874 8.036273 TCATCTTAAAATTAACGAAGTCCCAC 57.964 34.615 0.00 0.00 45.00 4.61
868 875 8.673711 CATCATCTTAAAATTAACGAAGTCCCA 58.326 33.333 0.00 0.00 45.00 4.37
869 876 8.674607 ACATCATCTTAAAATTAACGAAGTCCC 58.325 33.333 0.00 0.00 45.00 4.46
870 877 9.490663 CACATCATCTTAAAATTAACGAAGTCC 57.509 33.333 0.00 0.00 45.00 3.85
883 890 5.730550 ACTAAGCCGACACATCATCTTAAA 58.269 37.500 0.00 0.00 0.00 1.52
885 892 6.490381 AGATACTAAGCCGACACATCATCTTA 59.510 38.462 0.00 0.00 0.00 2.10
888 895 5.127693 AGATACTAAGCCGACACATCATC 57.872 43.478 0.00 0.00 0.00 2.92
906 913 6.753913 ATCTTTATGAGCACCTCCAAGATA 57.246 37.500 8.49 0.00 33.21 1.98
916 923 3.561725 GCACACCCTATCTTTATGAGCAC 59.438 47.826 0.00 0.00 0.00 4.40
928 935 2.877097 TGAACACATGCACACCCTAT 57.123 45.000 0.00 0.00 0.00 2.57
931 938 2.158559 TGTATGAACACATGCACACCC 58.841 47.619 0.00 0.00 33.23 4.61
933 940 3.663564 CGTTTGTATGAACACATGCACAC 59.336 43.478 0.00 0.00 36.64 3.82
939 946 3.482436 ACACCCGTTTGTATGAACACAT 58.518 40.909 0.00 0.00 34.61 3.21
947 954 3.060736 TGCACATACACCCGTTTGTAT 57.939 42.857 1.29 1.29 42.34 2.29
950 957 1.606668 ACTTGCACATACACCCGTTTG 59.393 47.619 0.00 0.00 0.00 2.93
951 958 1.606668 CACTTGCACATACACCCGTTT 59.393 47.619 0.00 0.00 0.00 3.60
952 959 1.234821 CACTTGCACATACACCCGTT 58.765 50.000 0.00 0.00 0.00 4.44
953 960 0.107831 ACACTTGCACATACACCCGT 59.892 50.000 0.00 0.00 0.00 5.28
954 961 2.087501 TACACTTGCACATACACCCG 57.912 50.000 0.00 0.00 0.00 5.28
1092 1109 0.978907 GAAGGAGGTGGTCGGGTTTA 59.021 55.000 0.00 0.00 0.00 2.01
1099 1116 0.906066 GGAGGAAGAAGGAGGTGGTC 59.094 60.000 0.00 0.00 0.00 4.02
1110 1127 1.961180 GCGCTGGCTAAGGAGGAAGA 61.961 60.000 0.00 0.00 35.83 2.87
1405 1432 2.475187 CCTGACGACTTACGAGGTAACG 60.475 54.545 0.00 0.00 45.77 3.18
1422 1449 0.736325 GCTAAGAAAGCGTCGCCTGA 60.736 55.000 14.86 0.00 42.53 3.86
1424 1451 4.187056 GCTAAGAAAGCGTCGCCT 57.813 55.556 14.86 0.00 42.53 5.52
1436 1463 3.810941 AGAACGACTAGAGATCGGCTAAG 59.189 47.826 0.00 0.00 43.95 2.18
1525 1585 0.684479 ATCCGCACTAGTGAGAGGCA 60.684 55.000 27.08 14.43 31.84 4.75
1625 1688 2.165167 CACAAGCAGGGACATTGATGT 58.835 47.619 0.00 0.00 45.16 3.06
1659 1727 2.026636 CCCCCTTTCAGATTTACACCGA 60.027 50.000 0.00 0.00 0.00 4.69
1662 1730 4.021456 CCAAACCCCCTTTCAGATTTACAC 60.021 45.833 0.00 0.00 0.00 2.90
1800 1868 2.422945 GCCCCAAAAAGGATCCTACGAT 60.423 50.000 16.55 0.00 41.22 3.73
1827 1895 6.251163 CGGCAAACATCATACAAACATAACTG 59.749 38.462 0.00 0.00 0.00 3.16
1830 1898 6.089476 CACGGCAAACATCATACAAACATAA 58.911 36.000 0.00 0.00 0.00 1.90
1843 1913 1.359833 CACACTGCACGGCAAACAT 59.640 52.632 0.35 0.00 38.41 2.71
1850 1920 2.549282 GCGTAACACACTGCACGG 59.451 61.111 0.00 0.00 32.07 4.94
1878 1948 4.371624 TCCTGAAACCATGACATGAACT 57.628 40.909 17.24 0.07 0.00 3.01
1921 1999 7.763172 TTTCATGCGACAAACATTTAAACTT 57.237 28.000 0.00 0.00 0.00 2.66
1924 2002 8.607459 ACAAATTTCATGCGACAAACATTTAAA 58.393 25.926 0.00 0.00 0.00 1.52
1937 2015 3.469899 TCCTCGAACAAATTTCATGCG 57.530 42.857 0.00 0.00 0.00 4.73
1952 2030 1.544246 GTGAAAACCCCCAAATCCTCG 59.456 52.381 0.00 0.00 0.00 4.63
1964 2042 2.561478 TACCCAGCTCTGTGAAAACC 57.439 50.000 0.00 0.00 0.00 3.27
1965 2043 4.833390 AGTATACCCAGCTCTGTGAAAAC 58.167 43.478 0.00 0.00 0.00 2.43
2020 3022 7.718272 AACTAGTACGTATTTCTTGTGCAAA 57.282 32.000 0.00 0.00 0.00 3.68
2029 3031 6.308766 TCTTTCGGCAAACTAGTACGTATTTC 59.691 38.462 0.00 0.00 0.00 2.17
2030 3032 6.158598 TCTTTCGGCAAACTAGTACGTATTT 58.841 36.000 0.00 0.00 0.00 1.40
2033 3035 4.764679 TCTTTCGGCAAACTAGTACGTA 57.235 40.909 0.00 0.00 0.00 3.57
2034 3036 3.648339 TCTTTCGGCAAACTAGTACGT 57.352 42.857 0.00 0.00 0.00 3.57
2035 3037 3.122445 GGTTCTTTCGGCAAACTAGTACG 59.878 47.826 0.00 0.00 0.00 3.67
2036 3038 4.313282 AGGTTCTTTCGGCAAACTAGTAC 58.687 43.478 0.00 0.00 0.00 2.73
2076 3079 0.905357 AAGGAACGATCAGGGACAGG 59.095 55.000 0.00 0.00 0.00 4.00
2083 3086 2.673368 CCTCGGAAAAAGGAACGATCAG 59.327 50.000 0.00 0.00 35.83 2.90
2085 3088 1.397343 GCCTCGGAAAAAGGAACGATC 59.603 52.381 0.00 0.00 35.83 3.69
2140 3149 8.918202 ATATAATTGTTGGGGTACATACACTG 57.082 34.615 0.00 0.00 0.00 3.66
2142 3151 9.223099 GGTATATAATTGTTGGGGTACATACAC 57.777 37.037 0.00 0.00 0.00 2.90
2144 3153 9.969001 ATGGTATATAATTGTTGGGGTACATAC 57.031 33.333 0.00 0.00 0.00 2.39
2152 3161 7.378181 GGCTTTCATGGTATATAATTGTTGGG 58.622 38.462 0.00 0.00 0.00 4.12
2154 3163 7.233348 AGGGGCTTTCATGGTATATAATTGTTG 59.767 37.037 0.00 0.00 0.00 3.33
2157 3168 6.721208 ACAGGGGCTTTCATGGTATATAATTG 59.279 38.462 0.00 0.00 0.00 2.32
2164 3175 2.311542 TCAACAGGGGCTTTCATGGTAT 59.688 45.455 0.00 0.00 0.00 2.73
2167 3178 1.180029 CTCAACAGGGGCTTTCATGG 58.820 55.000 0.00 0.00 0.00 3.66
2249 3266 8.926710 CATTTGTAGAGTCAACTTACGATCTTT 58.073 33.333 0.00 0.00 0.00 2.52
2253 3270 6.398918 AGCATTTGTAGAGTCAACTTACGAT 58.601 36.000 0.00 0.00 0.00 3.73
2337 3362 6.841229 TCTGATCTACTCATGTATGGAAAGGT 59.159 38.462 0.00 0.00 32.10 3.50
2375 3400 5.824904 ACAATATGCCATTGAAGAGACAC 57.175 39.130 13.43 0.00 33.51 3.67
2377 3402 9.056005 TGTATTACAATATGCCATTGAAGAGAC 57.944 33.333 13.43 7.56 33.51 3.36
2385 3410 9.979897 ATGGTCTATGTATTACAATATGCCATT 57.020 29.630 0.00 0.00 0.00 3.16
2423 3448 8.774890 AATTGCAACATATTCATTTGCTTGTA 57.225 26.923 0.00 0.00 44.87 2.41
2438 3463 7.444299 ACCAGAAGACATTAAAATTGCAACAT 58.556 30.769 0.00 0.00 0.00 2.71
2536 3561 6.090483 AGAAGGTCATAGTTCCGATGTATG 57.910 41.667 0.00 0.00 0.00 2.39
2570 3595 5.683876 ACATCTCCAACTATGTGTAGCTT 57.316 39.130 0.00 0.00 35.06 3.74
2614 3639 2.811431 CACTCCACGATTGGCTAACAAA 59.189 45.455 0.00 0.00 43.46 2.83
2685 3711 9.350951 GTTAAAATATTAAGGCCACACTATCCT 57.649 33.333 5.01 0.00 31.81 3.24
2765 3792 4.021192 TCTGTCAGTGTATGCTCACATTGA 60.021 41.667 10.79 10.79 41.27 2.57
2876 4369 5.990408 ACGAGTCACTTGAAATTCATCAAC 58.010 37.500 0.00 0.00 35.55 3.18
2914 4407 8.506437 CAAGCATATAACGTCATGGTTAATGAT 58.494 33.333 16.77 9.28 46.90 2.45
3204 4701 3.788227 AAGTGAGTTCCCACTGCAATA 57.212 42.857 0.00 0.00 45.82 1.90
3567 5071 5.108027 ACGAAACAAAACTGAATAAATGCGC 60.108 36.000 0.00 0.00 0.00 6.09
3675 5179 1.956636 GCCATTGATGCCTCAAGGTCA 60.957 52.381 13.96 0.00 44.32 4.02
3736 5240 7.871853 TGCCAGATAAAACAACTAAGAAAGAC 58.128 34.615 0.00 0.00 0.00 3.01
3771 5276 9.643693 CTGCAAATAAATTAAAATGAGTCACCT 57.356 29.630 0.00 0.00 0.00 4.00
3916 5422 7.795047 TGCATCTTTCTGACTCTCCATAATTA 58.205 34.615 0.00 0.00 0.00 1.40
3985 5491 9.509956 AATGCACAGGTACAGTTTATTAGTAAA 57.490 29.630 0.00 0.00 0.00 2.01
3991 5497 8.172352 TGTTAAATGCACAGGTACAGTTTATT 57.828 30.769 0.00 0.00 0.00 1.40
4006 5512 4.943093 TCTGCTATTCTGCTGTTAAATGCA 59.057 37.500 0.00 0.00 37.63 3.96
4049 5562 7.197017 CGTAGTTCAGAATTCTAGTGCTATGT 58.803 38.462 7.86 0.00 0.00 2.29
4050 5563 6.143118 GCGTAGTTCAGAATTCTAGTGCTATG 59.857 42.308 7.86 13.31 0.00 2.23
4051 5564 6.183360 TGCGTAGTTCAGAATTCTAGTGCTAT 60.183 38.462 7.86 0.00 0.00 2.97
4052 5565 5.124936 TGCGTAGTTCAGAATTCTAGTGCTA 59.875 40.000 7.86 5.98 0.00 3.49
4053 5566 4.082190 TGCGTAGTTCAGAATTCTAGTGCT 60.082 41.667 7.86 6.90 0.00 4.40
4054 5567 4.174009 TGCGTAGTTCAGAATTCTAGTGC 58.826 43.478 7.86 6.38 0.00 4.40
4055 5568 6.311445 ACAATGCGTAGTTCAGAATTCTAGTG 59.689 38.462 7.86 1.46 0.00 2.74
4059 5572 4.393062 CCACAATGCGTAGTTCAGAATTCT 59.607 41.667 0.88 0.88 0.00 2.40
4073 5586 1.459455 TTGTTGACCCCCACAATGCG 61.459 55.000 0.00 0.00 0.00 4.73
4101 5614 2.364970 CACACACCCACAAAATCACCAT 59.635 45.455 0.00 0.00 0.00 3.55
4119 5632 1.723288 TGTGACAGTATCCCCACACA 58.277 50.000 0.00 0.00 34.96 3.72
4123 5636 1.906574 GACCTTGTGACAGTATCCCCA 59.093 52.381 0.00 0.00 0.00 4.96
4125 5638 3.983044 AAGACCTTGTGACAGTATCCC 57.017 47.619 0.00 0.00 0.00 3.85
4138 5781 4.014406 CGGCCCAACTAAATAAAGACCTT 58.986 43.478 0.00 0.00 0.00 3.50
4215 5858 0.346932 TCCCCATCCTAGAAGGGCTT 59.653 55.000 8.21 0.00 39.06 4.35
4216 5859 0.346932 TTCCCCATCCTAGAAGGGCT 59.653 55.000 8.21 0.00 39.06 5.19
4217 5860 1.143889 CTTTCCCCATCCTAGAAGGGC 59.856 57.143 8.21 0.00 39.06 5.19
4218 5861 1.777272 CCTTTCCCCATCCTAGAAGGG 59.223 57.143 7.03 7.03 39.98 3.95
4227 5870 2.879103 TGAACAGACCTTTCCCCATC 57.121 50.000 0.00 0.00 0.00 3.51
4238 5881 9.668497 ACCCTCTAGTTAAATTTATGAACAGAC 57.332 33.333 0.00 0.00 0.00 3.51
4341 5984 1.298667 CGGAAAGGGGAACCATCGT 59.701 57.895 0.00 0.00 40.34 3.73
4359 6002 0.657368 CGCGACACAGGCTTTGAAAC 60.657 55.000 7.81 0.00 0.00 2.78
4378 6021 2.474032 GCTTTCGTTGTGCCGAGTATTC 60.474 50.000 0.00 0.00 38.23 1.75
4397 6040 3.432186 GTGGTTCTGCAAACCGCT 58.568 55.556 24.71 0.00 44.97 5.52
4460 6110 3.101437 TCCATTACTTTAGGCGTCCTCA 58.899 45.455 1.46 0.00 34.61 3.86
4486 6136 2.738521 CCACAGTGACGCCTTCGG 60.739 66.667 0.62 0.00 40.69 4.30
4497 6147 3.476031 CTGCCGGAACACCCACAGT 62.476 63.158 5.05 0.00 35.25 3.55
4505 6155 2.354704 CCAGATTAGAACTGCCGGAACA 60.355 50.000 5.05 0.00 34.47 3.18
4510 6160 1.134699 TCAGCCAGATTAGAACTGCCG 60.135 52.381 0.00 0.00 34.47 5.69
4523 6173 1.168714 GCCAGTAAAGGTTCAGCCAG 58.831 55.000 0.00 0.00 40.61 4.85
4524 6174 0.251165 GGCCAGTAAAGGTTCAGCCA 60.251 55.000 0.00 0.00 40.61 4.75
4525 6175 0.038310 AGGCCAGTAAAGGTTCAGCC 59.962 55.000 5.01 0.00 39.25 4.85
4541 6191 4.419522 TTTCTTCGTAATGCAGAAAGGC 57.580 40.909 0.00 0.00 32.72 4.35
4669 6367 1.186200 TTCCCCTGATCTGTCACTCG 58.814 55.000 0.00 0.00 0.00 4.18
4717 8266 2.485122 CTGGAATGTTTCGCCCGC 59.515 61.111 0.00 0.00 0.00 6.13
4795 8349 4.444876 CCAAGGGATACGGAATCAAGTGAT 60.445 45.833 2.91 0.00 36.20 3.06
4799 8353 2.172717 ACCCAAGGGATACGGAATCAAG 59.827 50.000 13.15 0.00 36.20 3.02
4807 8361 2.781681 AGAACAACCCAAGGGATACG 57.218 50.000 13.15 0.00 38.96 3.06
4813 8368 6.588719 TTGATGATAAAGAACAACCCAAGG 57.411 37.500 0.00 0.00 0.00 3.61
4817 8372 7.386059 ACCAATTTGATGATAAAGAACAACCC 58.614 34.615 0.00 0.00 0.00 4.11
4829 8384 8.412456 TGCGTATTATTTGACCAATTTGATGAT 58.588 29.630 0.00 0.00 0.00 2.45
4832 8387 8.465999 TCTTGCGTATTATTTGACCAATTTGAT 58.534 29.630 0.00 0.00 0.00 2.57
4964 8519 3.507233 TGAAAAGATGAATGCCTGTCACC 59.493 43.478 0.00 0.00 0.00 4.02
5005 8560 8.034058 TCTTACGTTACTACTGAAGTTACTCC 57.966 38.462 0.00 0.00 39.80 3.85
5018 8573 9.453572 TCTCCTCACTAAATTCTTACGTTACTA 57.546 33.333 0.00 0.00 0.00 1.82
5025 8580 6.793505 TCCCTCTCCTCACTAAATTCTTAC 57.206 41.667 0.00 0.00 0.00 2.34
5026 8581 7.132805 TCATCCCTCTCCTCACTAAATTCTTA 58.867 38.462 0.00 0.00 0.00 2.10
5028 8583 5.533112 TCATCCCTCTCCTCACTAAATTCT 58.467 41.667 0.00 0.00 0.00 2.40
5029 8584 5.878406 TCATCCCTCTCCTCACTAAATTC 57.122 43.478 0.00 0.00 0.00 2.17
5030 8585 6.838401 AATCATCCCTCTCCTCACTAAATT 57.162 37.500 0.00 0.00 0.00 1.82
5031 8586 6.388100 TCAAATCATCCCTCTCCTCACTAAAT 59.612 38.462 0.00 0.00 0.00 1.40
5032 8587 5.726308 TCAAATCATCCCTCTCCTCACTAAA 59.274 40.000 0.00 0.00 0.00 1.85
5036 8591 3.454082 ACTCAAATCATCCCTCTCCTCAC 59.546 47.826 0.00 0.00 0.00 3.51
5037 8592 3.729108 ACTCAAATCATCCCTCTCCTCA 58.271 45.455 0.00 0.00 0.00 3.86
5038 8593 5.129485 TGTTACTCAAATCATCCCTCTCCTC 59.871 44.000 0.00 0.00 0.00 3.71
5039 8594 5.032846 TGTTACTCAAATCATCCCTCTCCT 58.967 41.667 0.00 0.00 0.00 3.69
5040 8595 5.359194 TGTTACTCAAATCATCCCTCTCC 57.641 43.478 0.00 0.00 0.00 3.71
5046 8613 8.894768 AACTAGCTATGTTACTCAAATCATCC 57.105 34.615 0.00 0.00 0.00 3.51
5073 8640 0.678048 GGTTCGCCTTGAAGATGGCT 60.678 55.000 0.00 0.00 46.42 4.75
5075 8642 0.322456 TGGGTTCGCCTTGAAGATGG 60.322 55.000 0.00 0.00 37.23 3.51
5081 8648 1.353022 AGGTTTATGGGTTCGCCTTGA 59.647 47.619 0.00 0.00 37.45 3.02
5085 8652 0.750546 GGGAGGTTTATGGGTTCGCC 60.751 60.000 0.00 0.00 0.00 5.54
5094 8661 1.633945 AGAAGGTTGCGGGAGGTTTAT 59.366 47.619 0.00 0.00 0.00 1.40
5111 8678 2.379634 CGGACAACGCGATGCAGAA 61.380 57.895 15.93 0.00 34.82 3.02
5114 8681 4.365505 TCCGGACAACGCGATGCA 62.366 61.111 15.93 0.00 42.52 3.96
5116 8683 2.126071 AGTCCGGACAACGCGATG 60.126 61.111 35.00 15.61 42.52 3.84
5136 8703 1.168714 GTCAGTGTTGGATGGCTTCC 58.831 55.000 12.30 12.30 45.69 3.46
5150 8717 0.744874 CCGGACCGATACATGTCAGT 59.255 55.000 17.49 0.00 33.09 3.41
5152 8719 0.742505 GTCCGGACCGATACATGTCA 59.257 55.000 24.75 0.00 33.09 3.58
5156 8723 2.726274 GCGTCCGGACCGATACAT 59.274 61.111 28.52 0.00 0.00 2.29
5196 8763 3.883997 CAAACATCCCCCACGTTTG 57.116 52.632 0.00 0.00 42.32 2.93
5209 8776 1.070786 GTCTGGACTCCCGCAAACA 59.929 57.895 0.00 0.00 34.29 2.83
5216 8783 0.395862 TGAGATCGGTCTGGACTCCC 60.396 60.000 0.91 0.00 33.97 4.30
5224 8791 0.252284 ACTGGGGTTGAGATCGGTCT 60.252 55.000 0.00 0.00 37.42 3.85
5240 8807 1.962144 CCAAGGCTGCCAGAAACTG 59.038 57.895 22.65 7.58 0.00 3.16
5241 8808 1.905354 GCCAAGGCTGCCAGAAACT 60.905 57.895 22.65 0.00 38.26 2.66
5242 8809 2.653115 GCCAAGGCTGCCAGAAAC 59.347 61.111 22.65 2.04 38.26 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.