Multiple sequence alignment - TraesCS4A01G105800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G105800 chr4A 100.000 2402 0 0 1 2402 119930427 119932828 0.000000e+00 4436.0
1 TraesCS4A01G105800 chr4A 92.353 510 35 2 1893 2402 429098041 429097536 0.000000e+00 723.0
2 TraesCS4A01G105800 chr4A 94.144 222 13 0 1 222 558761952 558761731 2.960000e-89 339.0
3 TraesCS4A01G105800 chr3A 89.062 1673 137 14 224 1887 284299720 284301355 0.000000e+00 2034.0
4 TraesCS4A01G105800 chr3A 85.503 1283 116 24 623 1891 576911756 576912982 0.000000e+00 1275.0
5 TraesCS4A01G105800 chr3A 92.607 514 35 3 1890 2402 381522728 381523239 0.000000e+00 736.0
6 TraesCS4A01G105800 chr3A 91.829 514 38 4 1890 2402 441400326 441400836 0.000000e+00 713.0
7 TraesCS4A01G105800 chr3A 91.977 511 38 3 1893 2402 450418429 450417921 0.000000e+00 713.0
8 TraesCS4A01G105800 chr3A 91.961 510 38 3 1893 2402 214909742 214909236 0.000000e+00 712.0
9 TraesCS4A01G105800 chr3A 93.694 222 14 0 1 222 503281816 503282037 1.380000e-87 333.0
10 TraesCS4A01G105800 chr3D 89.593 1547 106 22 355 1883 146133375 146131866 0.000000e+00 1914.0
11 TraesCS4A01G105800 chr3D 96.528 144 5 0 223 366 146133931 146133788 3.090000e-59 239.0
12 TraesCS4A01G105800 chr2D 90.896 1362 99 16 223 1573 230674742 230673395 0.000000e+00 1805.0
13 TraesCS4A01G105800 chr2D 91.579 95 8 0 1606 1700 230672477 230672383 5.390000e-27 132.0
14 TraesCS4A01G105800 chr7A 90.375 1361 109 13 224 1573 408895913 408897262 0.000000e+00 1768.0
15 TraesCS4A01G105800 chr7A 89.605 1366 107 18 223 1573 568902834 568904179 0.000000e+00 1703.0
16 TraesCS4A01G105800 chr7A 89.377 1365 108 17 223 1572 526861068 526859726 0.000000e+00 1683.0
17 TraesCS4A01G105800 chr7A 90.314 1177 88 11 223 1385 470289136 470287972 0.000000e+00 1519.0
18 TraesCS4A01G105800 chr7A 86.525 1269 113 21 623 1887 242620999 242619785 0.000000e+00 1343.0
19 TraesCS4A01G105800 chr7A 92.621 515 34 4 1890 2402 403146771 403146259 0.000000e+00 737.0
20 TraesCS4A01G105800 chr7A 88.851 296 32 1 1593 1887 408897253 408897548 1.760000e-96 363.0
21 TraesCS4A01G105800 chr7A 87.797 295 28 3 1593 1887 568904171 568904457 2.960000e-89 339.0
22 TraesCS4A01G105800 chr7A 92.241 232 18 0 1 232 254132049 254131818 1.780000e-86 329.0
23 TraesCS4A01G105800 chr7A 88.312 231 25 2 1663 1891 199321436 199321666 2.350000e-70 276.0
24 TraesCS4A01G105800 chr7A 87.719 228 26 2 1663 1888 199314531 199314758 5.090000e-67 265.0
25 TraesCS4A01G105800 chr7A 87.281 228 27 2 1663 1888 199312236 199312463 2.370000e-65 259.0
26 TraesCS4A01G105800 chr7B 88.388 1464 101 30 223 1681 447994211 447995610 0.000000e+00 1698.0
27 TraesCS4A01G105800 chr7D 89.895 1237 76 28 342 1573 430481453 430482645 0.000000e+00 1546.0
28 TraesCS4A01G105800 chr7D 97.561 41 1 0 1606 1646 430482654 430482694 1.190000e-08 71.3
29 TraesCS4A01G105800 chr6B 85.758 1299 105 35 623 1892 262865660 262866907 0.000000e+00 1301.0
30 TraesCS4A01G105800 chr1D 89.824 796 60 6 622 1415 70130719 70131495 0.000000e+00 1002.0
31 TraesCS4A01G105800 chr2A 86.889 900 85 16 622 1518 615120216 615119347 0.000000e+00 977.0
32 TraesCS4A01G105800 chr2A 94.144 222 13 0 1 222 452277103 452277324 2.960000e-89 339.0
33 TraesCS4A01G105800 chr2A 92.576 229 17 0 1 229 172157570 172157342 1.780000e-86 329.0
34 TraesCS4A01G105800 chr6A 92.008 513 38 3 1890 2402 336812851 336812342 0.000000e+00 717.0
35 TraesCS4A01G105800 chr6A 91.396 523 41 4 1880 2402 137982144 137982662 0.000000e+00 713.0
36 TraesCS4A01G105800 chr6A 91.813 513 39 3 1890 2402 231762287 231762796 0.000000e+00 712.0
37 TraesCS4A01G105800 chr6A 84.543 634 71 21 1766 2381 397245458 397244834 9.500000e-169 603.0
38 TraesCS4A01G105800 chr6A 93.722 223 14 0 1 223 209219705 209219927 3.830000e-88 335.0
39 TraesCS4A01G105800 chr6A 93.694 222 14 0 1 222 351414814 351415035 1.380000e-87 333.0
40 TraesCS4A01G105800 chr5A 93.778 225 14 0 1 225 434680166 434679942 2.960000e-89 339.0
41 TraesCS4A01G105800 chr1A 93.694 222 14 0 1 222 342654432 342654211 1.380000e-87 333.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G105800 chr4A 119930427 119932828 2401 False 4436.00 4436 100.0000 1 2402 1 chr4A.!!$F1 2401
1 TraesCS4A01G105800 chr4A 429097536 429098041 505 True 723.00 723 92.3530 1893 2402 1 chr4A.!!$R1 509
2 TraesCS4A01G105800 chr3A 284299720 284301355 1635 False 2034.00 2034 89.0620 224 1887 1 chr3A.!!$F1 1663
3 TraesCS4A01G105800 chr3A 576911756 576912982 1226 False 1275.00 1275 85.5030 623 1891 1 chr3A.!!$F5 1268
4 TraesCS4A01G105800 chr3A 381522728 381523239 511 False 736.00 736 92.6070 1890 2402 1 chr3A.!!$F2 512
5 TraesCS4A01G105800 chr3A 441400326 441400836 510 False 713.00 713 91.8290 1890 2402 1 chr3A.!!$F3 512
6 TraesCS4A01G105800 chr3A 450417921 450418429 508 True 713.00 713 91.9770 1893 2402 1 chr3A.!!$R2 509
7 TraesCS4A01G105800 chr3A 214909236 214909742 506 True 712.00 712 91.9610 1893 2402 1 chr3A.!!$R1 509
8 TraesCS4A01G105800 chr3D 146131866 146133931 2065 True 1076.50 1914 93.0605 223 1883 2 chr3D.!!$R1 1660
9 TraesCS4A01G105800 chr2D 230672383 230674742 2359 True 968.50 1805 91.2375 223 1700 2 chr2D.!!$R1 1477
10 TraesCS4A01G105800 chr7A 526859726 526861068 1342 True 1683.00 1683 89.3770 223 1572 1 chr7A.!!$R5 1349
11 TraesCS4A01G105800 chr7A 470287972 470289136 1164 True 1519.00 1519 90.3140 223 1385 1 chr7A.!!$R4 1162
12 TraesCS4A01G105800 chr7A 242619785 242620999 1214 True 1343.00 1343 86.5250 623 1887 1 chr7A.!!$R1 1264
13 TraesCS4A01G105800 chr7A 408895913 408897548 1635 False 1065.50 1768 89.6130 224 1887 2 chr7A.!!$F3 1663
14 TraesCS4A01G105800 chr7A 568902834 568904457 1623 False 1021.00 1703 88.7010 223 1887 2 chr7A.!!$F4 1664
15 TraesCS4A01G105800 chr7A 403146259 403146771 512 True 737.00 737 92.6210 1890 2402 1 chr7A.!!$R3 512
16 TraesCS4A01G105800 chr7A 199312236 199314758 2522 False 262.00 265 87.5000 1663 1888 2 chr7A.!!$F2 225
17 TraesCS4A01G105800 chr7B 447994211 447995610 1399 False 1698.00 1698 88.3880 223 1681 1 chr7B.!!$F1 1458
18 TraesCS4A01G105800 chr7D 430481453 430482694 1241 False 808.65 1546 93.7280 342 1646 2 chr7D.!!$F1 1304
19 TraesCS4A01G105800 chr6B 262865660 262866907 1247 False 1301.00 1301 85.7580 623 1892 1 chr6B.!!$F1 1269
20 TraesCS4A01G105800 chr1D 70130719 70131495 776 False 1002.00 1002 89.8240 622 1415 1 chr1D.!!$F1 793
21 TraesCS4A01G105800 chr2A 615119347 615120216 869 True 977.00 977 86.8890 622 1518 1 chr2A.!!$R2 896
22 TraesCS4A01G105800 chr6A 336812342 336812851 509 True 717.00 717 92.0080 1890 2402 1 chr6A.!!$R1 512
23 TraesCS4A01G105800 chr6A 137982144 137982662 518 False 713.00 713 91.3960 1880 2402 1 chr6A.!!$F1 522
24 TraesCS4A01G105800 chr6A 231762287 231762796 509 False 712.00 712 91.8130 1890 2402 1 chr6A.!!$F3 512
25 TraesCS4A01G105800 chr6A 397244834 397245458 624 True 603.00 603 84.5430 1766 2381 1 chr6A.!!$R2 615

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
214 215 0.106419 AGGTCTGCCGAAACCCAAAA 60.106 50.0 0.0 0.0 40.5 2.44 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1489 1945 0.110283 CACACGTTTGCATGCATCGA 60.11 50.0 35.03 17.39 0.0 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.069344 TCATCATCAGTCTAAGAGGTAATCCA 58.931 38.462 0.00 0.00 35.89 3.41
27 28 6.716934 TCATCAGTCTAAGAGGTAATCCAC 57.283 41.667 0.00 0.00 35.89 4.02
38 39 1.732941 GTAATCCACCACATCACGCA 58.267 50.000 0.00 0.00 0.00 5.24
39 40 1.396996 GTAATCCACCACATCACGCAC 59.603 52.381 0.00 0.00 0.00 5.34
41 42 0.674581 ATCCACCACATCACGCACTG 60.675 55.000 0.00 0.00 0.00 3.66
42 43 2.327343 CCACCACATCACGCACTGG 61.327 63.158 0.00 0.00 0.00 4.00
43 44 1.301637 CACCACATCACGCACTGGA 60.302 57.895 0.00 0.00 0.00 3.86
44 45 0.884259 CACCACATCACGCACTGGAA 60.884 55.000 0.00 0.00 0.00 3.53
46 47 1.277842 ACCACATCACGCACTGGAATA 59.722 47.619 0.00 0.00 0.00 1.75
47 48 1.935873 CCACATCACGCACTGGAATAG 59.064 52.381 0.00 0.00 0.00 1.73
48 49 1.935873 CACATCACGCACTGGAATAGG 59.064 52.381 0.00 0.00 0.00 2.57
49 50 1.134401 ACATCACGCACTGGAATAGGG 60.134 52.381 0.00 0.00 0.00 3.53
53 54 2.769663 TCACGCACTGGAATAGGGTATT 59.230 45.455 0.00 0.00 30.24 1.89
54 55 3.962063 TCACGCACTGGAATAGGGTATTA 59.038 43.478 0.00 0.00 30.24 0.98
55 56 4.056050 CACGCACTGGAATAGGGTATTAC 58.944 47.826 0.00 0.00 30.24 1.89
56 57 3.707611 ACGCACTGGAATAGGGTATTACA 59.292 43.478 0.00 0.00 36.67 2.41
81 82 2.995547 GGTGGCCCGAACCAGTAT 59.004 61.111 0.00 0.00 41.46 2.12
82 83 2.214235 GGTGGCCCGAACCAGTATA 58.786 57.895 0.00 0.00 41.46 1.47
84 85 1.065272 GGTGGCCCGAACCAGTATAAA 60.065 52.381 0.00 0.00 41.46 1.40
85 86 2.011947 GTGGCCCGAACCAGTATAAAC 58.988 52.381 0.00 0.00 41.46 2.01
86 87 1.065272 TGGCCCGAACCAGTATAAACC 60.065 52.381 0.00 0.00 33.75 3.27
90 91 2.237893 CCCGAACCAGTATAAACCCTGT 59.762 50.000 0.00 0.00 0.00 4.00
91 92 3.267483 CCGAACCAGTATAAACCCTGTG 58.733 50.000 0.00 0.00 0.00 3.66
92 93 3.307199 CCGAACCAGTATAAACCCTGTGT 60.307 47.826 0.00 0.00 0.00 3.72
94 95 4.322499 CGAACCAGTATAAACCCTGTGTCT 60.322 45.833 0.00 0.00 0.00 3.41
96 97 5.578157 ACCAGTATAAACCCTGTGTCTTT 57.422 39.130 0.00 0.00 0.00 2.52
98 99 5.768164 ACCAGTATAAACCCTGTGTCTTTTG 59.232 40.000 0.00 0.00 0.00 2.44
100 101 6.293955 CCAGTATAAACCCTGTGTCTTTTGTG 60.294 42.308 0.00 0.00 0.00 3.33
103 104 3.866883 AACCCTGTGTCTTTTGTGTTG 57.133 42.857 0.00 0.00 0.00 3.33
104 105 2.802719 ACCCTGTGTCTTTTGTGTTGT 58.197 42.857 0.00 0.00 0.00 3.32
106 107 3.192633 ACCCTGTGTCTTTTGTGTTGTTC 59.807 43.478 0.00 0.00 0.00 3.18
108 109 4.082245 CCCTGTGTCTTTTGTGTTGTTCTT 60.082 41.667 0.00 0.00 0.00 2.52
110 111 5.572896 CCTGTGTCTTTTGTGTTGTTCTTTC 59.427 40.000 0.00 0.00 0.00 2.62
111 112 5.465935 TGTGTCTTTTGTGTTGTTCTTTCC 58.534 37.500 0.00 0.00 0.00 3.13
112 113 5.242838 TGTGTCTTTTGTGTTGTTCTTTCCT 59.757 36.000 0.00 0.00 0.00 3.36
113 114 6.156519 GTGTCTTTTGTGTTGTTCTTTCCTT 58.843 36.000 0.00 0.00 0.00 3.36
114 115 7.040340 TGTGTCTTTTGTGTTGTTCTTTCCTTA 60.040 33.333 0.00 0.00 0.00 2.69
115 116 7.484959 GTGTCTTTTGTGTTGTTCTTTCCTTAG 59.515 37.037 0.00 0.00 0.00 2.18
116 117 7.175990 TGTCTTTTGTGTTGTTCTTTCCTTAGT 59.824 33.333 0.00 0.00 0.00 2.24
117 118 8.027189 GTCTTTTGTGTTGTTCTTTCCTTAGTT 58.973 33.333 0.00 0.00 0.00 2.24
118 119 8.581578 TCTTTTGTGTTGTTCTTTCCTTAGTTT 58.418 29.630 0.00 0.00 0.00 2.66
120 121 9.849166 TTTTGTGTTGTTCTTTCCTTAGTTTAG 57.151 29.630 0.00 0.00 0.00 1.85
121 122 8.795842 TTGTGTTGTTCTTTCCTTAGTTTAGA 57.204 30.769 0.00 0.00 0.00 2.10
122 123 8.974060 TGTGTTGTTCTTTCCTTAGTTTAGAT 57.026 30.769 0.00 0.00 0.00 1.98
123 124 9.052759 TGTGTTGTTCTTTCCTTAGTTTAGATC 57.947 33.333 0.00 0.00 0.00 2.75
124 125 8.504815 GTGTTGTTCTTTCCTTAGTTTAGATCC 58.495 37.037 0.00 0.00 0.00 3.36
125 126 8.437575 TGTTGTTCTTTCCTTAGTTTAGATCCT 58.562 33.333 0.00 0.00 0.00 3.24
128 129 8.258708 TGTTCTTTCCTTAGTTTAGATCCTAGC 58.741 37.037 0.00 0.00 0.00 3.42
129 130 7.973048 TCTTTCCTTAGTTTAGATCCTAGCA 57.027 36.000 0.00 0.00 0.00 3.49
130 131 8.375493 TCTTTCCTTAGTTTAGATCCTAGCAA 57.625 34.615 0.00 0.00 0.00 3.91
131 132 8.478877 TCTTTCCTTAGTTTAGATCCTAGCAAG 58.521 37.037 0.00 0.00 0.00 4.01
134 135 3.460857 AGTTTAGATCCTAGCAAGGCG 57.539 47.619 0.00 0.00 43.31 5.52
136 137 2.082140 TTAGATCCTAGCAAGGCGGA 57.918 50.000 0.00 0.00 43.31 5.54
137 138 1.621992 TAGATCCTAGCAAGGCGGAG 58.378 55.000 0.00 0.00 43.31 4.63
139 140 1.075226 ATCCTAGCAAGGCGGAGGA 60.075 57.895 14.50 14.50 44.92 3.71
140 141 1.118356 ATCCTAGCAAGGCGGAGGAG 61.118 60.000 16.41 0.00 44.38 3.69
141 142 2.060980 CCTAGCAAGGCGGAGGAGT 61.061 63.158 6.41 0.00 38.31 3.85
142 143 1.142748 CTAGCAAGGCGGAGGAGTG 59.857 63.158 0.00 0.00 0.00 3.51
143 144 2.914777 CTAGCAAGGCGGAGGAGTGC 62.915 65.000 0.00 0.00 35.41 4.40
144 145 4.704833 GCAAGGCGGAGGAGTGCA 62.705 66.667 0.00 0.00 35.28 4.57
145 146 2.435586 CAAGGCGGAGGAGTGCAG 60.436 66.667 0.00 0.00 0.00 4.41
146 147 3.710722 AAGGCGGAGGAGTGCAGG 61.711 66.667 0.00 0.00 0.00 4.85
148 149 3.075005 GGCGGAGGAGTGCAGGTA 61.075 66.667 0.00 0.00 0.00 3.08
149 150 2.496817 GCGGAGGAGTGCAGGTAG 59.503 66.667 0.00 0.00 0.00 3.18
150 151 3.082579 GCGGAGGAGTGCAGGTAGG 62.083 68.421 0.00 0.00 0.00 3.18
151 152 2.904131 GGAGGAGTGCAGGTAGGC 59.096 66.667 0.00 0.00 0.00 3.93
153 154 1.519719 GAGGAGTGCAGGTAGGCAG 59.480 63.158 0.00 0.00 45.96 4.85
155 156 1.990060 GGAGTGCAGGTAGGCAGGA 60.990 63.158 0.00 0.00 45.96 3.86
156 157 1.519719 GAGTGCAGGTAGGCAGGAG 59.480 63.158 0.00 0.00 45.96 3.69
158 159 3.402681 TGCAGGTAGGCAGGAGGC 61.403 66.667 0.00 0.00 39.25 4.70
159 160 4.537433 GCAGGTAGGCAGGAGGCG 62.537 72.222 0.00 0.00 46.16 5.52
163 164 0.983378 AGGTAGGCAGGAGGCGAAAT 60.983 55.000 0.00 0.00 46.16 2.17
164 165 0.533085 GGTAGGCAGGAGGCGAAATC 60.533 60.000 0.00 0.00 46.16 2.17
165 166 0.466124 GTAGGCAGGAGGCGAAATCT 59.534 55.000 0.00 0.00 46.16 2.40
166 167 0.753262 TAGGCAGGAGGCGAAATCTC 59.247 55.000 0.00 0.00 46.16 2.75
175 176 4.559386 CGAAATCTCCGCGCGCAC 62.559 66.667 32.61 2.05 0.00 5.34
176 177 4.223964 GAAATCTCCGCGCGCACC 62.224 66.667 32.61 1.16 0.00 5.01
187 188 2.260434 GCGCACCCTAGTGTTCGA 59.740 61.111 0.30 0.00 46.35 3.71
188 189 1.373748 GCGCACCCTAGTGTTCGAA 60.374 57.895 0.30 0.00 46.35 3.71
189 190 1.623973 GCGCACCCTAGTGTTCGAAC 61.624 60.000 21.42 21.42 46.35 3.95
190 191 1.012486 CGCACCCTAGTGTTCGAACC 61.012 60.000 24.78 15.84 46.35 3.62
191 192 0.320697 GCACCCTAGTGTTCGAACCT 59.679 55.000 24.78 21.38 46.35 3.50
193 194 1.616865 CACCCTAGTGTTCGAACCTGA 59.383 52.381 24.78 9.11 39.30 3.86
194 195 1.893801 ACCCTAGTGTTCGAACCTGAG 59.106 52.381 24.78 17.21 0.00 3.35
195 196 2.168496 CCCTAGTGTTCGAACCTGAGA 58.832 52.381 24.78 3.37 0.00 3.27
197 198 2.164624 CCTAGTGTTCGAACCTGAGAGG 59.835 54.545 24.78 18.42 42.49 3.69
206 207 3.700109 CCTGAGAGGTCTGCCGAA 58.300 61.111 0.00 0.00 40.50 4.30
207 208 1.975327 CCTGAGAGGTCTGCCGAAA 59.025 57.895 0.00 0.00 40.50 3.46
208 209 0.390472 CCTGAGAGGTCTGCCGAAAC 60.390 60.000 0.00 0.00 40.50 2.78
209 210 0.390472 CTGAGAGGTCTGCCGAAACC 60.390 60.000 0.00 0.00 40.50 3.27
210 211 1.079057 GAGAGGTCTGCCGAAACCC 60.079 63.158 0.00 0.00 40.50 4.11
211 212 1.827399 GAGAGGTCTGCCGAAACCCA 61.827 60.000 0.00 0.00 40.50 4.51
214 215 0.106419 AGGTCTGCCGAAACCCAAAA 60.106 50.000 0.00 0.00 40.50 2.44
216 217 1.067846 GGTCTGCCGAAACCCAAAATC 60.068 52.381 0.00 0.00 0.00 2.17
217 218 1.067846 GTCTGCCGAAACCCAAAATCC 60.068 52.381 0.00 0.00 0.00 3.01
218 219 0.109319 CTGCCGAAACCCAAAATCCG 60.109 55.000 0.00 0.00 0.00 4.18
219 220 0.537600 TGCCGAAACCCAAAATCCGA 60.538 50.000 0.00 0.00 0.00 4.55
220 221 0.109458 GCCGAAACCCAAAATCCGAC 60.109 55.000 0.00 0.00 0.00 4.79
251 252 4.277672 TCTTCACGGTCCTACATGCTATAC 59.722 45.833 0.00 0.00 0.00 1.47
310 312 7.876582 ACTTATACCACAGTTCTTTGAGTTACC 59.123 37.037 0.00 0.00 0.00 2.85
461 894 7.988737 TCAGAAAAAGTGCATGTCATATAAGG 58.011 34.615 0.00 0.00 0.00 2.69
481 914 3.130633 GGTGGTCAATCAAAAAGTTGCC 58.869 45.455 0.00 0.00 34.50 4.52
569 1002 2.325484 TGAGTTCCTCCTGTAAGTGCA 58.675 47.619 0.00 0.00 0.00 4.57
573 1006 2.808543 GTTCCTCCTGTAAGTGCAACAG 59.191 50.000 9.63 9.63 43.26 3.16
588 1021 5.586243 AGTGCAACAGTGGTCATGTATTATC 59.414 40.000 0.00 0.00 41.43 1.75
596 1029 6.709397 CAGTGGTCATGTATTATCAGCTCAAT 59.291 38.462 0.00 0.00 0.00 2.57
604 1037 9.961265 CATGTATTATCAGCTCAATTCAACATT 57.039 29.630 0.00 0.00 0.00 2.71
605 1038 9.961265 ATGTATTATCAGCTCAATTCAACATTG 57.039 29.630 0.00 0.00 0.00 2.82
631 1064 6.262944 ACTTGTTTGAAGCAGAATGACACATA 59.737 34.615 0.00 0.00 39.69 2.29
796 1229 3.136809 TCCGATCAGAGTAGAGGTAGCTT 59.863 47.826 0.00 0.00 0.00 3.74
808 1242 5.248380 AGAGGTAGCTTTGAAAGGTCATT 57.752 39.130 13.41 0.14 40.27 2.57
844 1278 2.758979 TCTAAGGCTCTAACCACTTCCG 59.241 50.000 0.00 0.00 0.00 4.30
1141 1576 1.109920 TCTGTGCCTCCCTATCGCTC 61.110 60.000 0.00 0.00 0.00 5.03
1158 1593 0.539051 CTCCGTCCTGCTCCTCAATT 59.461 55.000 0.00 0.00 0.00 2.32
1174 1609 7.121315 GCTCCTCAATTTGTCACCTTAGTTATT 59.879 37.037 0.00 0.00 0.00 1.40
1263 1703 3.889134 CTTCAGCTGGTGCCTCGCA 62.889 63.158 15.13 0.00 40.80 5.10
1379 1835 0.033504 GACGTGGAACCTGCTTCAGA 59.966 55.000 0.00 0.00 32.44 3.27
1394 1850 4.529769 TGCTTCAGAGAAGAAGAGATGGAA 59.470 41.667 10.72 0.00 46.18 3.53
1397 1853 6.642430 CTTCAGAGAAGAAGAGATGGAACAT 58.358 40.000 0.52 0.00 45.33 2.71
1399 1855 7.794536 CTTCAGAGAAGAAGAGATGGAACATGT 60.795 40.741 0.52 0.00 45.33 3.21
1411 1867 4.527509 TGGAACATGTGAGAGAAGAGAC 57.472 45.455 0.00 0.00 0.00 3.36
1417 1873 3.441500 TGTGAGAGAAGAGACCAGCTA 57.558 47.619 0.00 0.00 0.00 3.32
1418 1874 3.351740 TGTGAGAGAAGAGACCAGCTAG 58.648 50.000 0.00 0.00 0.00 3.42
1419 1875 3.009584 TGTGAGAGAAGAGACCAGCTAGA 59.990 47.826 0.00 0.00 0.00 2.43
1420 1876 4.207165 GTGAGAGAAGAGACCAGCTAGAT 58.793 47.826 0.00 0.00 0.00 1.98
1422 1878 4.644234 TGAGAGAAGAGACCAGCTAGATTG 59.356 45.833 0.00 0.00 0.00 2.67
1424 1880 3.102972 AGAAGAGACCAGCTAGATTGCA 58.897 45.455 0.00 0.00 34.99 4.08
1426 1882 3.472283 AGAGACCAGCTAGATTGCATG 57.528 47.619 0.00 0.00 34.99 4.06
1427 1883 2.770802 AGAGACCAGCTAGATTGCATGT 59.229 45.455 0.00 0.00 34.99 3.21
1428 1884 3.963374 AGAGACCAGCTAGATTGCATGTA 59.037 43.478 0.00 0.00 34.99 2.29
1429 1885 4.592351 AGAGACCAGCTAGATTGCATGTAT 59.408 41.667 0.00 0.00 34.99 2.29
1432 1888 5.071519 AGACCAGCTAGATTGCATGTATCTT 59.928 40.000 14.85 0.47 34.35 2.40
1433 1889 5.688807 ACCAGCTAGATTGCATGTATCTTT 58.311 37.500 14.85 3.18 34.35 2.52
1434 1890 6.830912 ACCAGCTAGATTGCATGTATCTTTA 58.169 36.000 14.85 1.75 34.35 1.85
1435 1891 7.456725 ACCAGCTAGATTGCATGTATCTTTAT 58.543 34.615 14.85 0.00 34.35 1.40
1436 1892 7.605691 ACCAGCTAGATTGCATGTATCTTTATC 59.394 37.037 14.85 1.94 34.35 1.75
1437 1893 7.201504 CCAGCTAGATTGCATGTATCTTTATCG 60.202 40.741 14.85 4.55 34.35 2.92
1438 1894 6.815641 AGCTAGATTGCATGTATCTTTATCGG 59.184 38.462 14.85 2.56 34.35 4.18
1439 1895 6.813649 GCTAGATTGCATGTATCTTTATCGGA 59.186 38.462 14.85 0.00 34.35 4.55
1440 1896 7.201478 GCTAGATTGCATGTATCTTTATCGGAC 60.201 40.741 14.85 0.00 34.35 4.79
1442 1898 7.164122 AGATTGCATGTATCTTTATCGGACAT 58.836 34.615 6.64 0.00 0.00 3.06
1443 1899 8.314021 AGATTGCATGTATCTTTATCGGACATA 58.686 33.333 6.64 0.00 0.00 2.29
1445 1901 6.754193 TGCATGTATCTTTATCGGACATACA 58.246 36.000 0.00 0.00 35.09 2.29
1447 1903 7.877612 TGCATGTATCTTTATCGGACATACAAT 59.122 33.333 0.00 0.00 34.46 2.71
1448 1904 8.721478 GCATGTATCTTTATCGGACATACAATT 58.279 33.333 0.00 0.00 34.46 2.32
1454 1910 9.838339 ATCTTTATCGGACATACAATTCTTTCT 57.162 29.630 0.00 0.00 0.00 2.52
1459 1915 8.970691 ATCGGACATACAATTCTTTCTTTTTG 57.029 30.769 0.00 0.00 0.00 2.44
1461 1917 6.089417 CGGACATACAATTCTTTCTTTTTGCC 59.911 38.462 0.00 0.00 0.00 4.52
1462 1918 6.928492 GGACATACAATTCTTTCTTTTTGCCA 59.072 34.615 0.00 0.00 0.00 4.92
1463 1919 7.440856 GGACATACAATTCTTTCTTTTTGCCAA 59.559 33.333 0.00 0.00 0.00 4.52
1465 1921 9.341078 ACATACAATTCTTTCTTTTTGCCAATT 57.659 25.926 0.00 0.00 0.00 2.32
1467 1923 6.497437 ACAATTCTTTCTTTTTGCCAATTGC 58.503 32.000 0.00 0.00 34.51 3.56
1468 1924 6.319405 ACAATTCTTTCTTTTTGCCAATTGCT 59.681 30.769 0.00 0.00 42.00 3.91
1469 1925 7.498570 ACAATTCTTTCTTTTTGCCAATTGCTA 59.501 29.630 0.00 0.00 42.00 3.49
1471 1927 6.160576 TCTTTCTTTTTGCCAATTGCTAGT 57.839 33.333 0.00 0.00 42.00 2.57
1473 1929 4.519540 TCTTTTTGCCAATTGCTAGTCC 57.480 40.909 0.00 0.00 42.00 3.85
1474 1930 3.894427 TCTTTTTGCCAATTGCTAGTCCA 59.106 39.130 0.00 0.00 42.00 4.02
1476 1932 5.714333 TCTTTTTGCCAATTGCTAGTCCATA 59.286 36.000 0.00 0.00 42.00 2.74
1477 1933 6.380846 TCTTTTTGCCAATTGCTAGTCCATAT 59.619 34.615 0.00 0.00 42.00 1.78
1478 1934 6.543430 TTTTGCCAATTGCTAGTCCATATT 57.457 33.333 0.00 0.00 42.00 1.28
1481 1937 4.580167 TGCCAATTGCTAGTCCATATTGTC 59.420 41.667 0.00 0.00 42.00 3.18
1483 1939 5.132502 CCAATTGCTAGTCCATATTGTCCA 58.867 41.667 0.00 0.00 0.00 4.02
1485 1941 6.294342 CCAATTGCTAGTCCATATTGTCCATG 60.294 42.308 0.00 0.00 0.00 3.66
1486 1942 5.372343 TTGCTAGTCCATATTGTCCATGT 57.628 39.130 0.00 0.00 0.00 3.21
1488 1944 4.164030 TGCTAGTCCATATTGTCCATGTGT 59.836 41.667 0.00 0.00 0.00 3.72
1489 1945 5.126067 GCTAGTCCATATTGTCCATGTGTT 58.874 41.667 0.00 0.00 0.00 3.32
1492 1948 4.081142 AGTCCATATTGTCCATGTGTTCGA 60.081 41.667 0.00 0.00 0.00 3.71
1493 1949 4.816385 GTCCATATTGTCCATGTGTTCGAT 59.184 41.667 0.00 0.00 0.00 3.59
1494 1950 4.815846 TCCATATTGTCCATGTGTTCGATG 59.184 41.667 0.00 0.00 0.00 3.84
1496 1952 1.889545 TTGTCCATGTGTTCGATGCA 58.110 45.000 0.00 0.00 0.00 3.96
1500 1956 0.452585 CCATGTGTTCGATGCATGCA 59.547 50.000 25.04 25.04 38.79 3.96
1505 1961 0.590682 TGTTCGATGCATGCAAACGT 59.409 45.000 32.88 18.13 33.90 3.99
1506 1962 0.976963 GTTCGATGCATGCAAACGTG 59.023 50.000 32.88 19.88 35.78 4.49
1507 1963 0.590682 TTCGATGCATGCAAACGTGT 59.409 45.000 32.88 17.16 35.09 4.49
1510 1966 1.346378 GATGCATGCAAACGTGTGGC 61.346 55.000 26.68 3.07 35.09 5.01
1511 1967 1.808531 ATGCATGCAAACGTGTGGCT 61.809 50.000 26.68 0.00 35.09 4.75
1512 1968 1.300080 GCATGCAAACGTGTGGCTT 60.300 52.632 14.21 0.00 35.09 4.35
1513 1969 0.875474 GCATGCAAACGTGTGGCTTT 60.875 50.000 14.21 0.00 35.09 3.51
1514 1970 1.569708 CATGCAAACGTGTGGCTTTT 58.430 45.000 8.05 0.00 0.00 2.27
1515 1971 1.258458 CATGCAAACGTGTGGCTTTTG 59.742 47.619 8.05 0.00 38.76 2.44
1516 1972 0.459237 TGCAAACGTGTGGCTTTTGG 60.459 50.000 8.05 0.00 36.98 3.28
1517 1973 0.179124 GCAAACGTGTGGCTTTTGGA 60.179 50.000 8.05 0.00 36.98 3.53
1519 1975 2.820330 CAAACGTGTGGCTTTTGGAAT 58.180 42.857 0.00 0.00 34.06 3.01
1520 1976 2.793278 AACGTGTGGCTTTTGGAATC 57.207 45.000 0.00 0.00 0.00 2.52
1521 1977 0.591170 ACGTGTGGCTTTTGGAATCG 59.409 50.000 0.00 0.00 0.00 3.34
1522 1978 0.109781 CGTGTGGCTTTTGGAATCGG 60.110 55.000 0.00 0.00 0.00 4.18
1525 1981 2.161609 GTGTGGCTTTTGGAATCGGTAG 59.838 50.000 0.00 0.00 0.00 3.18
1528 1984 2.572556 TGGCTTTTGGAATCGGTAGGTA 59.427 45.455 0.00 0.00 0.00 3.08
1529 1985 2.941064 GGCTTTTGGAATCGGTAGGTAC 59.059 50.000 0.00 0.00 0.00 3.34
1530 1986 3.602483 GCTTTTGGAATCGGTAGGTACA 58.398 45.455 0.00 0.00 0.00 2.90
1531 1987 3.373130 GCTTTTGGAATCGGTAGGTACAC 59.627 47.826 0.00 0.00 0.00 2.90
1532 1988 3.615224 TTTGGAATCGGTAGGTACACC 57.385 47.619 0.00 0.00 35.04 4.16
1545 2001 4.608948 AGGTACACCTGCTATATTGCTC 57.391 45.455 10.48 0.00 46.55 4.26
1546 2002 4.227197 AGGTACACCTGCTATATTGCTCT 58.773 43.478 10.48 0.00 46.55 4.09
1547 2003 4.282195 AGGTACACCTGCTATATTGCTCTC 59.718 45.833 10.48 0.00 46.55 3.20
1548 2004 3.377346 ACACCTGCTATATTGCTCTCG 57.623 47.619 10.48 0.28 0.00 4.04
1549 2005 2.036475 ACACCTGCTATATTGCTCTCGG 59.964 50.000 10.48 7.89 0.00 4.63
1550 2006 2.297315 CACCTGCTATATTGCTCTCGGA 59.703 50.000 10.48 0.00 0.00 4.55
1551 2007 3.056250 CACCTGCTATATTGCTCTCGGAT 60.056 47.826 10.48 0.00 0.00 4.18
1553 2009 4.158764 ACCTGCTATATTGCTCTCGGATAC 59.841 45.833 10.48 0.00 0.00 2.24
1573 2029 8.822105 GGATACGTGTAAGAGCTTTATTTTTG 57.178 34.615 0.00 0.00 0.00 2.44
1574 2030 8.662141 GGATACGTGTAAGAGCTTTATTTTTGA 58.338 33.333 0.00 0.00 0.00 2.69
1576 2032 9.821662 ATACGTGTAAGAGCTTTATTTTTGAAC 57.178 29.630 0.00 0.00 0.00 3.18
1577 2033 7.927048 ACGTGTAAGAGCTTTATTTTTGAACT 58.073 30.769 0.00 0.00 0.00 3.01
1629 2085 3.848272 TTCTTTCCAATTCGGACATGC 57.152 42.857 0.00 0.00 46.36 4.06
1630 2086 2.789213 TCTTTCCAATTCGGACATGCA 58.211 42.857 0.00 0.00 46.36 3.96
1631 2087 3.355378 TCTTTCCAATTCGGACATGCAT 58.645 40.909 0.00 0.00 46.36 3.96
1633 2089 2.416680 TCCAATTCGGACATGCATCA 57.583 45.000 0.00 0.00 39.64 3.07
1634 2090 2.291365 TCCAATTCGGACATGCATCAG 58.709 47.619 0.00 0.00 39.64 2.90
1637 2093 3.488047 CCAATTCGGACATGCATCAGTTC 60.488 47.826 0.00 0.00 36.56 3.01
1638 2094 2.470983 TTCGGACATGCATCAGTTCA 57.529 45.000 0.00 0.00 0.00 3.18
1639 2095 2.696989 TCGGACATGCATCAGTTCAT 57.303 45.000 0.00 0.00 0.00 2.57
1648 2104 2.447250 GCATCAGTTCATGCGTGATTG 58.553 47.619 9.96 11.49 39.92 2.67
1657 2113 2.945510 TGCGTGATTGCATTGGACT 58.054 47.368 0.00 0.00 40.62 3.85
1658 2114 0.804364 TGCGTGATTGCATTGGACTC 59.196 50.000 0.00 0.00 40.62 3.36
1659 2115 0.247814 GCGTGATTGCATTGGACTCG 60.248 55.000 0.00 0.00 34.15 4.18
1660 2116 1.358877 CGTGATTGCATTGGACTCGA 58.641 50.000 0.00 0.00 0.00 4.04
1661 2117 1.325640 CGTGATTGCATTGGACTCGAG 59.674 52.381 11.84 11.84 0.00 4.04
1662 2118 1.063174 GTGATTGCATTGGACTCGAGC 59.937 52.381 13.61 5.26 0.00 5.03
1663 2119 1.338960 TGATTGCATTGGACTCGAGCA 60.339 47.619 13.61 0.00 0.00 4.26
1664 2120 3.320823 TTGCATTGGACTCGAGCAA 57.679 47.368 13.61 10.19 42.27 3.91
1665 2121 1.825090 TTGCATTGGACTCGAGCAAT 58.175 45.000 13.61 12.15 39.95 3.56
1666 2122 2.689553 TGCATTGGACTCGAGCAATA 57.310 45.000 13.61 0.00 31.42 1.90
1711 3323 3.056107 TGCGTGCTAGTCTTATGGTTCTT 60.056 43.478 0.00 0.00 0.00 2.52
1717 3331 6.538742 GTGCTAGTCTTATGGTTCTTTGCATA 59.461 38.462 0.00 0.00 0.00 3.14
1856 3480 1.069227 GTGGACAAACGTGATGGCTTC 60.069 52.381 7.33 0.00 0.00 3.86
1917 3541 1.226463 CGCGTGTGTAGCCGTGATA 60.226 57.895 0.00 0.00 36.74 2.15
1958 3584 2.621055 CGGGAAGTGAACATGGTTTTGA 59.379 45.455 0.00 0.00 0.00 2.69
1959 3585 3.067461 CGGGAAGTGAACATGGTTTTGAA 59.933 43.478 0.00 0.00 0.00 2.69
2023 3660 0.238289 CGACCATTGCGTTGCTTCTT 59.762 50.000 0.00 0.00 0.00 2.52
2062 3699 3.314913 CGCATGTTAGCCACCATATTTGA 59.685 43.478 0.00 0.00 0.00 2.69
2074 3711 5.284079 CACCATATTTGATTAGTGCTTGCC 58.716 41.667 0.00 0.00 0.00 4.52
2133 3772 6.547880 AGCTTAAATAGTCTTGATCTCGAGGA 59.452 38.462 13.56 0.00 0.00 3.71
2258 3897 6.866770 TCGATGAAGATCTTAGTCGTTGTTTT 59.133 34.615 27.41 0.00 33.83 2.43
2264 3903 7.316544 AGATCTTAGTCGTTGTTTTTGTGTT 57.683 32.000 0.00 0.00 0.00 3.32
2321 3960 2.029020 CGATCGGGGATCTAGCATTTGA 60.029 50.000 7.38 0.00 36.96 2.69
2347 3986 6.704493 GGTTGTCTTCTTTTATTTTGGTTCCC 59.296 38.462 0.00 0.00 0.00 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.732140 TGGATTACCTCTTAGACTGATGATGAT 59.268 37.037 0.00 0.00 37.04 2.45
1 2 7.014711 GTGGATTACCTCTTAGACTGATGATGA 59.985 40.741 0.00 0.00 37.04 2.92
2 3 7.151308 GTGGATTACCTCTTAGACTGATGATG 58.849 42.308 0.00 0.00 37.04 3.07
3 4 6.268847 GGTGGATTACCTCTTAGACTGATGAT 59.731 42.308 0.00 0.00 46.51 2.45
5 6 5.848406 GGTGGATTACCTCTTAGACTGATG 58.152 45.833 0.00 0.00 46.51 3.07
19 20 1.396996 GTGCGTGATGTGGTGGATTAC 59.603 52.381 0.00 0.00 0.00 1.89
20 21 1.277842 AGTGCGTGATGTGGTGGATTA 59.722 47.619 0.00 0.00 0.00 1.75
21 22 0.036732 AGTGCGTGATGTGGTGGATT 59.963 50.000 0.00 0.00 0.00 3.01
22 23 0.674581 CAGTGCGTGATGTGGTGGAT 60.675 55.000 0.00 0.00 0.00 3.41
23 24 1.301637 CAGTGCGTGATGTGGTGGA 60.302 57.895 0.00 0.00 0.00 4.02
26 27 0.036732 ATTCCAGTGCGTGATGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
27 28 1.935873 CTATTCCAGTGCGTGATGTGG 59.064 52.381 0.00 0.00 0.00 4.17
28 29 1.935873 CCTATTCCAGTGCGTGATGTG 59.064 52.381 0.00 0.00 0.00 3.21
29 30 1.134401 CCCTATTCCAGTGCGTGATGT 60.134 52.381 0.00 0.00 0.00 3.06
30 31 1.134401 ACCCTATTCCAGTGCGTGATG 60.134 52.381 0.00 0.00 0.00 3.07
31 32 1.204146 ACCCTATTCCAGTGCGTGAT 58.796 50.000 0.00 0.00 0.00 3.06
32 33 1.855295 TACCCTATTCCAGTGCGTGA 58.145 50.000 0.00 0.00 0.00 4.35
34 35 3.707611 TGTAATACCCTATTCCAGTGCGT 59.292 43.478 0.00 0.00 0.00 5.24
35 36 4.056050 GTGTAATACCCTATTCCAGTGCG 58.944 47.826 0.00 0.00 0.00 5.34
66 67 1.065272 GGTTTATACTGGTTCGGGCCA 60.065 52.381 4.39 0.00 36.97 5.36
67 68 1.671979 GGTTTATACTGGTTCGGGCC 58.328 55.000 0.00 0.00 0.00 5.80
68 69 1.211212 AGGGTTTATACTGGTTCGGGC 59.789 52.381 0.00 0.00 0.00 6.13
70 71 3.267483 CACAGGGTTTATACTGGTTCGG 58.733 50.000 0.00 0.00 39.00 4.30
71 72 3.930848 GACACAGGGTTTATACTGGTTCG 59.069 47.826 0.00 0.00 39.00 3.95
72 73 5.161943 AGACACAGGGTTTATACTGGTTC 57.838 43.478 0.00 0.00 39.00 3.62
75 76 5.768164 ACAAAAGACACAGGGTTTATACTGG 59.232 40.000 0.00 0.00 39.00 4.00
76 77 6.262273 ACACAAAAGACACAGGGTTTATACTG 59.738 38.462 0.00 0.00 40.48 2.74
77 78 6.362248 ACACAAAAGACACAGGGTTTATACT 58.638 36.000 0.00 0.00 0.00 2.12
78 79 6.628919 ACACAAAAGACACAGGGTTTATAC 57.371 37.500 0.00 0.00 0.00 1.47
79 80 6.603997 ACAACACAAAAGACACAGGGTTTATA 59.396 34.615 0.00 0.00 0.00 0.98
81 82 4.767928 ACAACACAAAAGACACAGGGTTTA 59.232 37.500 0.00 0.00 0.00 2.01
82 83 3.576550 ACAACACAAAAGACACAGGGTTT 59.423 39.130 0.00 0.00 0.00 3.27
84 85 2.802719 ACAACACAAAAGACACAGGGT 58.197 42.857 0.00 0.00 0.00 4.34
85 86 3.443681 AGAACAACACAAAAGACACAGGG 59.556 43.478 0.00 0.00 0.00 4.45
86 87 4.701956 AGAACAACACAAAAGACACAGG 57.298 40.909 0.00 0.00 0.00 4.00
90 91 5.975693 AGGAAAGAACAACACAAAAGACA 57.024 34.783 0.00 0.00 0.00 3.41
91 92 7.535997 ACTAAGGAAAGAACAACACAAAAGAC 58.464 34.615 0.00 0.00 0.00 3.01
92 93 7.696992 ACTAAGGAAAGAACAACACAAAAGA 57.303 32.000 0.00 0.00 0.00 2.52
94 95 9.849166 CTAAACTAAGGAAAGAACAACACAAAA 57.151 29.630 0.00 0.00 0.00 2.44
96 97 8.795842 TCTAAACTAAGGAAAGAACAACACAA 57.204 30.769 0.00 0.00 0.00 3.33
98 99 8.504815 GGATCTAAACTAAGGAAAGAACAACAC 58.495 37.037 0.00 0.00 0.00 3.32
100 101 8.850007 AGGATCTAAACTAAGGAAAGAACAAC 57.150 34.615 0.00 0.00 0.00 3.32
103 104 8.258708 TGCTAGGATCTAAACTAAGGAAAGAAC 58.741 37.037 0.00 0.00 0.00 3.01
104 105 8.375493 TGCTAGGATCTAAACTAAGGAAAGAA 57.625 34.615 0.00 0.00 0.00 2.52
106 107 7.713073 CCTTGCTAGGATCTAAACTAAGGAAAG 59.287 40.741 8.73 0.00 45.05 2.62
108 109 6.408206 GCCTTGCTAGGATCTAAACTAAGGAA 60.408 42.308 19.07 0.00 45.05 3.36
110 111 5.301555 GCCTTGCTAGGATCTAAACTAAGG 58.698 45.833 19.07 1.79 45.05 2.69
111 112 4.985409 CGCCTTGCTAGGATCTAAACTAAG 59.015 45.833 19.07 0.00 45.05 2.18
112 113 4.202223 CCGCCTTGCTAGGATCTAAACTAA 60.202 45.833 19.07 0.00 45.05 2.24
113 114 3.321111 CCGCCTTGCTAGGATCTAAACTA 59.679 47.826 19.07 0.00 45.05 2.24
114 115 2.103263 CCGCCTTGCTAGGATCTAAACT 59.897 50.000 19.07 0.00 45.05 2.66
115 116 2.102588 TCCGCCTTGCTAGGATCTAAAC 59.897 50.000 19.07 0.00 45.05 2.01
116 117 2.365617 CTCCGCCTTGCTAGGATCTAAA 59.634 50.000 19.07 0.00 45.05 1.85
117 118 1.964223 CTCCGCCTTGCTAGGATCTAA 59.036 52.381 19.07 0.00 45.05 2.10
118 119 1.621992 CTCCGCCTTGCTAGGATCTA 58.378 55.000 19.07 0.00 45.05 1.98
120 121 1.115930 TCCTCCGCCTTGCTAGGATC 61.116 60.000 19.07 0.00 45.05 3.36
121 122 1.075226 TCCTCCGCCTTGCTAGGAT 60.075 57.895 19.07 0.00 45.05 3.24
122 123 1.758514 CTCCTCCGCCTTGCTAGGA 60.759 63.158 19.07 2.37 45.05 2.94
123 124 2.060980 ACTCCTCCGCCTTGCTAGG 61.061 63.158 10.15 10.15 45.02 3.02
124 125 1.142748 CACTCCTCCGCCTTGCTAG 59.857 63.158 0.00 0.00 0.00 3.42
125 126 3.019003 GCACTCCTCCGCCTTGCTA 62.019 63.158 0.00 0.00 0.00 3.49
127 128 4.704833 TGCACTCCTCCGCCTTGC 62.705 66.667 0.00 0.00 0.00 4.01
128 129 2.435586 CTGCACTCCTCCGCCTTG 60.436 66.667 0.00 0.00 0.00 3.61
129 130 3.710722 CCTGCACTCCTCCGCCTT 61.711 66.667 0.00 0.00 0.00 4.35
130 131 3.602075 TACCTGCACTCCTCCGCCT 62.602 63.158 0.00 0.00 0.00 5.52
131 132 3.075005 TACCTGCACTCCTCCGCC 61.075 66.667 0.00 0.00 0.00 6.13
134 135 1.965754 CTGCCTACCTGCACTCCTCC 61.966 65.000 0.00 0.00 36.04 4.30
136 137 1.992277 CCTGCCTACCTGCACTCCT 60.992 63.158 0.00 0.00 36.04 3.69
137 138 1.965754 CTCCTGCCTACCTGCACTCC 61.966 65.000 0.00 0.00 36.04 3.85
139 140 1.992277 CCTCCTGCCTACCTGCACT 60.992 63.158 0.00 0.00 36.04 4.40
140 141 2.586792 CCTCCTGCCTACCTGCAC 59.413 66.667 0.00 0.00 36.04 4.57
141 142 3.402681 GCCTCCTGCCTACCTGCA 61.403 66.667 0.00 0.00 39.37 4.41
142 143 4.537433 CGCCTCCTGCCTACCTGC 62.537 72.222 0.00 0.00 36.24 4.85
143 144 1.899437 TTTCGCCTCCTGCCTACCTG 61.899 60.000 0.00 0.00 36.24 4.00
144 145 0.983378 ATTTCGCCTCCTGCCTACCT 60.983 55.000 0.00 0.00 36.24 3.08
145 146 0.533085 GATTTCGCCTCCTGCCTACC 60.533 60.000 0.00 0.00 36.24 3.18
146 147 0.466124 AGATTTCGCCTCCTGCCTAC 59.534 55.000 0.00 0.00 36.24 3.18
147 148 0.753262 GAGATTTCGCCTCCTGCCTA 59.247 55.000 0.00 0.00 36.24 3.93
148 149 1.524482 GAGATTTCGCCTCCTGCCT 59.476 57.895 0.00 0.00 36.24 4.75
149 150 1.524849 GGAGATTTCGCCTCCTGCC 60.525 63.158 0.00 0.00 45.18 4.85
150 151 1.884926 CGGAGATTTCGCCTCCTGC 60.885 63.158 0.00 0.00 46.15 4.85
151 152 1.884926 GCGGAGATTTCGCCTCCTG 60.885 63.158 0.00 0.00 46.15 3.86
158 159 4.559386 GTGCGCGCGGAGATTTCG 62.559 66.667 33.06 1.18 0.00 3.46
159 160 4.223964 GGTGCGCGCGGAGATTTC 62.224 66.667 33.06 16.42 0.00 2.17
168 169 3.488090 GAACACTAGGGTGCGCGC 61.488 66.667 27.26 27.26 46.57 6.86
169 170 3.179265 CGAACACTAGGGTGCGCG 61.179 66.667 13.75 6.74 46.57 6.86
172 173 0.320697 AGGTTCGAACACTAGGGTGC 59.679 55.000 28.24 8.76 46.57 5.01
175 176 2.164624 CTCTCAGGTTCGAACACTAGGG 59.835 54.545 28.24 17.32 0.00 3.53
176 177 2.164624 CCTCTCAGGTTCGAACACTAGG 59.835 54.545 28.24 20.81 0.00 3.02
177 178 3.495670 CCTCTCAGGTTCGAACACTAG 57.504 52.381 28.24 20.11 0.00 2.57
189 190 0.390472 GTTTCGGCAGACCTCTCAGG 60.390 60.000 0.00 0.00 42.49 3.86
190 191 0.390472 GGTTTCGGCAGACCTCTCAG 60.390 60.000 0.00 0.00 33.08 3.35
191 192 1.671742 GGTTTCGGCAGACCTCTCA 59.328 57.895 0.00 0.00 33.08 3.27
193 194 1.415672 TTGGGTTTCGGCAGACCTCT 61.416 55.000 0.00 0.00 36.18 3.69
194 195 0.536460 TTTGGGTTTCGGCAGACCTC 60.536 55.000 0.00 0.00 36.18 3.85
195 196 0.106419 TTTTGGGTTTCGGCAGACCT 60.106 50.000 0.00 0.00 36.18 3.85
197 198 1.067846 GGATTTTGGGTTTCGGCAGAC 60.068 52.381 0.00 0.00 0.00 3.51
199 200 0.109319 CGGATTTTGGGTTTCGGCAG 60.109 55.000 0.00 0.00 0.00 4.85
201 202 0.109458 GTCGGATTTTGGGTTTCGGC 60.109 55.000 0.00 0.00 0.00 5.54
203 204 3.357166 TTTGTCGGATTTTGGGTTTCG 57.643 42.857 0.00 0.00 0.00 3.46
251 252 6.258287 TCAACAACTTCTTGATTTGCCAATTG 59.742 34.615 0.00 0.00 0.00 2.32
422 855 8.650714 GCACTTTTTCTGATAATTGTTCCATTC 58.349 33.333 0.00 0.00 0.00 2.67
437 870 7.699391 CACCTTATATGACATGCACTTTTTCTG 59.301 37.037 0.00 0.00 0.00 3.02
461 894 2.794350 CGGCAACTTTTTGATTGACCAC 59.206 45.455 0.00 0.00 34.24 4.16
520 953 6.944234 ATTTTTAATAGCGGAAGGAGGAAG 57.056 37.500 0.00 0.00 0.00 3.46
569 1002 5.994250 AGCTGATAATACATGACCACTGTT 58.006 37.500 0.00 0.00 0.00 3.16
573 1006 7.227314 TGAATTGAGCTGATAATACATGACCAC 59.773 37.037 0.00 0.00 0.00 4.16
596 1029 5.718146 TGCTTCAAACAAGTCAATGTTGAA 58.282 33.333 0.00 0.00 42.49 2.69
604 1037 4.639755 TGTCATTCTGCTTCAAACAAGTCA 59.360 37.500 0.00 0.00 0.00 3.41
605 1038 4.972440 GTGTCATTCTGCTTCAAACAAGTC 59.028 41.667 0.00 0.00 0.00 3.01
739 1172 9.691362 TCAAGGTTAATCTTATTTGCAAAGTTC 57.309 29.630 18.19 0.99 0.00 3.01
741 1174 9.643693 CATCAAGGTTAATCTTATTTGCAAAGT 57.356 29.630 18.19 8.45 0.00 2.66
796 1229 4.384940 TGATGTGACGAATGACCTTTCAA 58.615 39.130 0.00 0.00 34.61 2.69
808 1242 4.645136 AGCCTTAGACTAATGATGTGACGA 59.355 41.667 2.03 0.00 0.00 4.20
844 1278 6.693545 CGTAGTTGAGATGTTAGATTCTCCAC 59.306 42.308 0.00 0.00 38.05 4.02
1141 1576 1.089920 CAAATTGAGGAGCAGGACGG 58.910 55.000 0.00 0.00 0.00 4.79
1158 1593 7.126726 AGGTAGCCATAATAACTAAGGTGACAA 59.873 37.037 0.00 0.00 0.00 3.18
1174 1609 3.519510 GCATGAGGGATAAGGTAGCCATA 59.480 47.826 0.00 0.00 35.47 2.74
1176 1611 1.699634 GCATGAGGGATAAGGTAGCCA 59.300 52.381 0.00 0.00 35.47 4.75
1263 1703 1.982938 CCTTCCTTCCCCGTCGTCT 60.983 63.158 0.00 0.00 0.00 4.18
1379 1835 5.483231 TCTCACATGTTCCATCTCTTCTTCT 59.517 40.000 0.00 0.00 0.00 2.85
1394 1850 2.233431 GCTGGTCTCTTCTCTCACATGT 59.767 50.000 0.00 0.00 0.00 3.21
1397 1853 2.300956 AGCTGGTCTCTTCTCTCACA 57.699 50.000 0.00 0.00 0.00 3.58
1399 1855 4.518278 ATCTAGCTGGTCTCTTCTCTCA 57.482 45.455 0.00 0.00 0.00 3.27
1411 1867 7.201504 CGATAAAGATACATGCAATCTAGCTGG 60.202 40.741 10.66 0.00 33.32 4.85
1417 1873 6.524734 TGTCCGATAAAGATACATGCAATCT 58.475 36.000 5.53 5.53 35.17 2.40
1418 1874 6.785488 TGTCCGATAAAGATACATGCAATC 57.215 37.500 0.00 0.00 0.00 2.67
1419 1875 7.877612 TGTATGTCCGATAAAGATACATGCAAT 59.122 33.333 0.00 0.00 39.25 3.56
1420 1876 7.213678 TGTATGTCCGATAAAGATACATGCAA 58.786 34.615 0.00 0.00 39.25 4.08
1422 1878 7.652300 TTGTATGTCCGATAAAGATACATGC 57.348 36.000 0.00 0.00 34.16 4.06
1428 1884 9.838339 AGAAAGAATTGTATGTCCGATAAAGAT 57.162 29.630 0.00 0.00 0.00 2.40
1429 1885 9.667107 AAGAAAGAATTGTATGTCCGATAAAGA 57.333 29.630 0.00 0.00 0.00 2.52
1434 1890 7.542130 GCAAAAAGAAAGAATTGTATGTCCGAT 59.458 33.333 0.00 0.00 0.00 4.18
1435 1891 6.861055 GCAAAAAGAAAGAATTGTATGTCCGA 59.139 34.615 0.00 0.00 0.00 4.55
1436 1892 6.089417 GGCAAAAAGAAAGAATTGTATGTCCG 59.911 38.462 0.00 0.00 0.00 4.79
1437 1893 6.928492 TGGCAAAAAGAAAGAATTGTATGTCC 59.072 34.615 0.00 0.00 0.00 4.02
1438 1894 7.945033 TGGCAAAAAGAAAGAATTGTATGTC 57.055 32.000 0.00 0.00 0.00 3.06
1439 1895 8.907222 ATTGGCAAAAAGAAAGAATTGTATGT 57.093 26.923 3.01 0.00 0.00 2.29
1440 1896 9.601971 CAATTGGCAAAAAGAAAGAATTGTATG 57.398 29.630 3.01 0.00 0.00 2.39
1442 1898 7.638134 GCAATTGGCAAAAAGAAAGAATTGTA 58.362 30.769 3.01 0.00 43.97 2.41
1443 1899 6.497437 GCAATTGGCAAAAAGAAAGAATTGT 58.503 32.000 3.01 0.00 43.97 2.71
1459 1915 4.022849 GGACAATATGGACTAGCAATTGGC 60.023 45.833 7.72 0.00 45.30 4.52
1461 1917 6.263842 ACATGGACAATATGGACTAGCAATTG 59.736 38.462 0.00 0.00 34.48 2.32
1462 1918 6.263842 CACATGGACAATATGGACTAGCAATT 59.736 38.462 0.00 0.00 0.00 2.32
1463 1919 5.766670 CACATGGACAATATGGACTAGCAAT 59.233 40.000 0.00 0.00 0.00 3.56
1465 1921 4.164030 ACACATGGACAATATGGACTAGCA 59.836 41.667 0.00 0.00 0.00 3.49
1467 1923 5.463392 CGAACACATGGACAATATGGACTAG 59.537 44.000 0.00 0.00 0.00 2.57
1468 1924 5.128008 TCGAACACATGGACAATATGGACTA 59.872 40.000 0.00 0.00 0.00 2.59
1469 1925 4.081142 TCGAACACATGGACAATATGGACT 60.081 41.667 0.00 0.00 0.00 3.85
1471 1927 4.479786 TCGAACACATGGACAATATGGA 57.520 40.909 0.00 0.00 0.00 3.41
1473 1929 4.035441 TGCATCGAACACATGGACAATATG 59.965 41.667 0.00 0.00 0.00 1.78
1474 1930 4.198530 TGCATCGAACACATGGACAATAT 58.801 39.130 0.00 0.00 0.00 1.28
1476 1932 2.435422 TGCATCGAACACATGGACAAT 58.565 42.857 0.00 0.00 0.00 2.71
1477 1933 1.889545 TGCATCGAACACATGGACAA 58.110 45.000 0.00 0.00 0.00 3.18
1478 1934 1.738908 CATGCATCGAACACATGGACA 59.261 47.619 14.54 0.00 37.99 4.02
1481 1937 0.452585 TGCATGCATCGAACACATGG 59.547 50.000 18.46 8.35 41.17 3.66
1483 1939 2.598589 GTTTGCATGCATCGAACACAT 58.401 42.857 23.37 0.00 0.00 3.21
1485 1941 0.976963 CGTTTGCATGCATCGAACAC 59.023 50.000 29.14 16.06 0.00 3.32
1486 1942 0.590682 ACGTTTGCATGCATCGAACA 59.409 45.000 35.03 16.08 0.00 3.18
1488 1944 0.590682 ACACGTTTGCATGCATCGAA 59.409 45.000 35.03 21.47 0.00 3.71
1489 1945 0.110283 CACACGTTTGCATGCATCGA 60.110 50.000 35.03 17.39 0.00 3.59
1492 1948 1.373246 GCCACACGTTTGCATGCAT 60.373 52.632 23.37 2.82 0.00 3.96
1493 1949 2.014064 AAGCCACACGTTTGCATGCA 62.014 50.000 18.46 18.46 0.00 3.96
1494 1950 0.875474 AAAGCCACACGTTTGCATGC 60.875 50.000 11.82 11.82 0.00 4.06
1496 1952 1.569708 CAAAAGCCACACGTTTGCAT 58.430 45.000 0.00 0.00 40.13 3.96
1500 1956 2.542824 CGATTCCAAAAGCCACACGTTT 60.543 45.455 0.00 0.00 0.00 3.60
1505 1961 2.432444 CTACCGATTCCAAAAGCCACA 58.568 47.619 0.00 0.00 0.00 4.17
1506 1962 1.743394 CCTACCGATTCCAAAAGCCAC 59.257 52.381 0.00 0.00 0.00 5.01
1507 1963 1.353022 ACCTACCGATTCCAAAAGCCA 59.647 47.619 0.00 0.00 0.00 4.75
1510 1966 3.937079 GGTGTACCTACCGATTCCAAAAG 59.063 47.826 0.00 0.00 0.00 2.27
1511 1967 3.583966 AGGTGTACCTACCGATTCCAAAA 59.416 43.478 0.72 0.00 46.48 2.44
1512 1968 3.055675 CAGGTGTACCTACCGATTCCAAA 60.056 47.826 2.72 0.00 46.65 3.28
1513 1969 2.498481 CAGGTGTACCTACCGATTCCAA 59.502 50.000 2.72 0.00 46.65 3.53
1514 1970 2.104967 CAGGTGTACCTACCGATTCCA 58.895 52.381 2.72 0.00 46.65 3.53
1515 1971 1.202498 GCAGGTGTACCTACCGATTCC 60.202 57.143 2.72 0.00 46.65 3.01
1516 1972 1.755380 AGCAGGTGTACCTACCGATTC 59.245 52.381 2.72 0.00 46.65 2.52
1517 1973 1.861982 AGCAGGTGTACCTACCGATT 58.138 50.000 2.72 0.00 46.65 3.34
1519 1975 2.742428 ATAGCAGGTGTACCTACCGA 57.258 50.000 2.72 0.00 46.65 4.69
1520 1976 4.806330 CAATATAGCAGGTGTACCTACCG 58.194 47.826 2.72 0.00 46.65 4.02
1521 1977 4.283722 AGCAATATAGCAGGTGTACCTACC 59.716 45.833 2.72 0.00 46.65 3.18
1522 1978 5.244178 AGAGCAATATAGCAGGTGTACCTAC 59.756 44.000 2.72 0.00 46.65 3.18
1525 1981 4.561105 GAGAGCAATATAGCAGGTGTACC 58.439 47.826 0.00 0.00 36.85 3.34
1528 1984 2.036475 CCGAGAGCAATATAGCAGGTGT 59.964 50.000 0.00 0.00 36.85 4.16
1529 1985 2.297315 TCCGAGAGCAATATAGCAGGTG 59.703 50.000 0.00 0.00 36.85 4.00
1530 1986 2.598565 TCCGAGAGCAATATAGCAGGT 58.401 47.619 0.00 0.00 36.85 4.00
1531 1987 3.883830 ATCCGAGAGCAATATAGCAGG 57.116 47.619 0.00 0.00 36.85 4.85
1532 1988 4.142578 ACGTATCCGAGAGCAATATAGCAG 60.143 45.833 0.00 0.00 37.88 4.24
1533 1989 3.756963 ACGTATCCGAGAGCAATATAGCA 59.243 43.478 0.00 0.00 37.88 3.49
1534 1990 4.099120 CACGTATCCGAGAGCAATATAGC 58.901 47.826 0.00 0.00 37.88 2.97
1535 1991 5.298197 ACACGTATCCGAGAGCAATATAG 57.702 43.478 0.00 0.00 37.88 1.31
1538 1994 4.818005 TCTTACACGTATCCGAGAGCAATA 59.182 41.667 0.00 0.00 37.88 1.90
1540 1996 3.011818 TCTTACACGTATCCGAGAGCAA 58.988 45.455 0.00 0.00 37.88 3.91
1541 1997 2.612672 CTCTTACACGTATCCGAGAGCA 59.387 50.000 0.00 0.00 37.88 4.26
1542 1998 2.602694 GCTCTTACACGTATCCGAGAGC 60.603 54.545 17.07 17.07 44.61 4.09
1543 1999 2.873472 AGCTCTTACACGTATCCGAGAG 59.127 50.000 7.90 8.17 35.54 3.20
1544 2000 2.915349 AGCTCTTACACGTATCCGAGA 58.085 47.619 7.90 0.00 37.88 4.04
1545 2001 3.694535 AAGCTCTTACACGTATCCGAG 57.305 47.619 0.00 0.00 37.88 4.63
1546 2002 5.762825 ATAAAGCTCTTACACGTATCCGA 57.237 39.130 0.00 0.00 37.88 4.55
1547 2003 6.823678 AAATAAAGCTCTTACACGTATCCG 57.176 37.500 0.00 0.00 40.83 4.18
1548 2004 8.662141 TCAAAAATAAAGCTCTTACACGTATCC 58.338 33.333 0.00 0.00 0.00 2.59
1550 2006 9.821662 GTTCAAAAATAAAGCTCTTACACGTAT 57.178 29.630 0.00 0.00 0.00 3.06
1551 2007 9.048446 AGTTCAAAAATAAAGCTCTTACACGTA 57.952 29.630 0.00 0.00 0.00 3.57
1553 2009 8.782533 AAGTTCAAAAATAAAGCTCTTACACG 57.217 30.769 0.00 0.00 0.00 4.49
1615 2071 2.019249 ACTGATGCATGTCCGAATTGG 58.981 47.619 2.46 0.00 40.09 3.16
1616 2072 3.127376 TGAACTGATGCATGTCCGAATTG 59.873 43.478 2.46 0.00 0.00 2.32
1617 2073 3.346315 TGAACTGATGCATGTCCGAATT 58.654 40.909 2.46 0.00 0.00 2.17
1619 2075 2.470983 TGAACTGATGCATGTCCGAA 57.529 45.000 2.46 0.00 0.00 4.30
1620 2076 2.282407 CATGAACTGATGCATGTCCGA 58.718 47.619 2.46 0.00 37.65 4.55
1621 2077 1.268386 GCATGAACTGATGCATGTCCG 60.268 52.381 2.46 0.00 46.77 4.79
1622 2078 2.486951 GCATGAACTGATGCATGTCC 57.513 50.000 2.46 0.00 46.77 4.02
1628 2084 2.447250 CAATCACGCATGAACTGATGC 58.553 47.619 0.00 0.00 44.54 3.91
1629 2085 2.159490 TGCAATCACGCATGAACTGATG 60.159 45.455 0.00 0.00 38.69 3.07
1630 2086 2.086094 TGCAATCACGCATGAACTGAT 58.914 42.857 0.00 0.00 38.69 2.90
1631 2087 1.521580 TGCAATCACGCATGAACTGA 58.478 45.000 0.00 0.00 38.69 3.41
1641 2097 1.325640 CTCGAGTCCAATGCAATCACG 59.674 52.381 3.62 0.00 0.00 4.35
1643 2099 1.338960 TGCTCGAGTCCAATGCAATCA 60.339 47.619 15.13 0.00 0.00 2.57
1644 2100 1.372582 TGCTCGAGTCCAATGCAATC 58.627 50.000 15.13 0.00 0.00 2.67
1645 2101 1.825090 TTGCTCGAGTCCAATGCAAT 58.175 45.000 15.13 0.00 38.49 3.56
1646 2102 1.825090 ATTGCTCGAGTCCAATGCAA 58.175 45.000 15.13 11.26 45.62 4.08
1648 2104 1.258982 CGTATTGCTCGAGTCCAATGC 59.741 52.381 21.53 19.55 33.93 3.56
1650 2106 2.094182 ACACGTATTGCTCGAGTCCAAT 60.094 45.455 15.13 17.11 35.90 3.16
1651 2107 1.271379 ACACGTATTGCTCGAGTCCAA 59.729 47.619 15.13 10.99 0.00 3.53
1652 2108 0.885879 ACACGTATTGCTCGAGTCCA 59.114 50.000 15.13 0.90 0.00 4.02
1653 2109 1.546834 GACACGTATTGCTCGAGTCC 58.453 55.000 15.13 0.00 40.78 3.85
1654 2110 1.135489 TGGACACGTATTGCTCGAGTC 60.135 52.381 15.13 7.10 43.85 3.36
1655 2111 0.885879 TGGACACGTATTGCTCGAGT 59.114 50.000 15.13 0.00 35.21 4.18
1657 2113 1.203758 ACATGGACACGTATTGCTCGA 59.796 47.619 0.00 0.00 0.00 4.04
1658 2114 1.640428 ACATGGACACGTATTGCTCG 58.360 50.000 0.00 0.00 0.00 5.03
1659 2115 3.782046 ACTACATGGACACGTATTGCTC 58.218 45.455 0.00 0.00 0.00 4.26
1660 2116 3.430374 GGACTACATGGACACGTATTGCT 60.430 47.826 0.00 0.00 0.00 3.91
1661 2117 2.864343 GGACTACATGGACACGTATTGC 59.136 50.000 0.00 0.00 0.00 3.56
1662 2118 4.386867 AGGACTACATGGACACGTATTG 57.613 45.455 0.00 0.00 0.00 1.90
1663 2119 4.142004 GGAAGGACTACATGGACACGTATT 60.142 45.833 0.00 0.00 0.00 1.89
1664 2120 3.383825 GGAAGGACTACATGGACACGTAT 59.616 47.826 0.00 0.00 0.00 3.06
1665 2121 2.756760 GGAAGGACTACATGGACACGTA 59.243 50.000 0.00 0.00 0.00 3.57
1666 2122 1.549170 GGAAGGACTACATGGACACGT 59.451 52.381 0.00 0.00 0.00 4.49
1711 3323 9.320352 ACTTATATGTTGTCACGTTATATGCAA 57.680 29.630 0.00 0.00 0.00 4.08
1833 3457 1.401409 GCCATCACGTTTGTCCACATG 60.401 52.381 0.00 0.00 0.00 3.21
2042 3679 8.077991 CACTAATCAAATATGGTGGCTAACATG 58.922 37.037 11.40 0.00 0.00 3.21
2074 3711 0.811616 GGTAATGAGGTGGAGCTGCG 60.812 60.000 0.00 0.00 0.00 5.18
2133 3772 2.159128 CGAGGACTCAGCAATCTCACAT 60.159 50.000 0.00 0.00 0.00 3.21
2321 3960 7.497595 GGAACCAAAATAAAAGAAGACAACCT 58.502 34.615 0.00 0.00 0.00 3.50
2347 3986 4.641094 AGAGTACAATCAAGGTCCGACTAG 59.359 45.833 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.