Multiple sequence alignment - TraesCS4A01G104500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G104500 chr4A 100.000 4060 0 0 1 4060 117897693 117893634 0.000000e+00 7498.0
1 TraesCS4A01G104500 chr4D 89.245 2027 103 44 1 1978 347516149 347518109 0.000000e+00 2429.0
2 TraesCS4A01G104500 chr4D 88.128 876 56 14 2423 3289 347518387 347519223 0.000000e+00 998.0
3 TraesCS4A01G104500 chr4B 87.420 2186 121 57 51 2159 428020369 428022477 0.000000e+00 2372.0
4 TraesCS4A01G104500 chr4B 91.535 697 29 13 2638 3314 428022635 428023321 0.000000e+00 933.0
5 TraesCS4A01G104500 chr4B 100.000 37 0 0 1 37 428020341 428020377 7.280000e-08 69.4
6 TraesCS4A01G104500 chr3D 85.962 691 79 13 3378 4060 583050822 583051502 0.000000e+00 723.0
7 TraesCS4A01G104500 chr7B 84.783 690 91 9 3379 4060 136889187 136889870 0.000000e+00 680.0
8 TraesCS4A01G104500 chr7B 89.474 266 20 2 2155 2420 142777989 142778246 3.030000e-86 329.0
9 TraesCS4A01G104500 chr1D 84.840 686 90 9 3378 4056 460746088 460746766 0.000000e+00 678.0
10 TraesCS4A01G104500 chr1D 83.913 690 95 10 3379 4058 402432398 402433081 0.000000e+00 645.0
11 TraesCS4A01G104500 chr7A 84.241 698 87 10 3376 4060 94311977 94312664 0.000000e+00 658.0
12 TraesCS4A01G104500 chr3B 83.450 713 101 9 3359 4060 728802639 728801933 0.000000e+00 647.0
13 TraesCS4A01G104500 chr2D 83.721 688 97 8 3379 4058 450206871 450207551 1.590000e-178 636.0
14 TraesCS4A01G104500 chr7D 84.804 612 82 7 3414 4019 235399349 235399955 4.490000e-169 604.0
15 TraesCS4A01G104500 chr5A 81.268 694 118 8 3377 4058 430514066 430514759 5.930000e-153 551.0
16 TraesCS4A01G104500 chr5A 91.667 264 14 1 2157 2420 32977254 32976999 3.860000e-95 359.0
17 TraesCS4A01G104500 chr5A 89.630 270 23 1 2156 2420 442554225 442553956 5.030000e-89 339.0
18 TraesCS4A01G104500 chr6A 90.977 266 16 5 2155 2420 48881837 48882094 6.460000e-93 351.0
19 TraesCS4A01G104500 chrUn 89.773 264 24 3 2157 2420 96661817 96661557 6.500000e-88 335.0
20 TraesCS4A01G104500 chr5B 89.773 264 22 3 2157 2420 133590718 133590460 2.340000e-87 333.0
21 TraesCS4A01G104500 chr5B 89.773 264 19 2 2157 2420 609157861 609157606 8.410000e-87 331.0
22 TraesCS4A01G104500 chr2B 88.406 276 25 6 2146 2420 17028837 17029106 3.910000e-85 326.0
23 TraesCS4A01G104500 chr1B 89.098 266 21 4 2155 2420 540510075 540510332 1.410000e-84 324.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G104500 chr4A 117893634 117897693 4059 True 7498.0 7498 100.0000 1 4060 1 chr4A.!!$R1 4059
1 TraesCS4A01G104500 chr4D 347516149 347519223 3074 False 1713.5 2429 88.6865 1 3289 2 chr4D.!!$F1 3288
2 TraesCS4A01G104500 chr4B 428020341 428023321 2980 False 1124.8 2372 92.9850 1 3314 3 chr4B.!!$F1 3313
3 TraesCS4A01G104500 chr3D 583050822 583051502 680 False 723.0 723 85.9620 3378 4060 1 chr3D.!!$F1 682
4 TraesCS4A01G104500 chr7B 136889187 136889870 683 False 680.0 680 84.7830 3379 4060 1 chr7B.!!$F1 681
5 TraesCS4A01G104500 chr1D 460746088 460746766 678 False 678.0 678 84.8400 3378 4056 1 chr1D.!!$F2 678
6 TraesCS4A01G104500 chr1D 402432398 402433081 683 False 645.0 645 83.9130 3379 4058 1 chr1D.!!$F1 679
7 TraesCS4A01G104500 chr7A 94311977 94312664 687 False 658.0 658 84.2410 3376 4060 1 chr7A.!!$F1 684
8 TraesCS4A01G104500 chr3B 728801933 728802639 706 True 647.0 647 83.4500 3359 4060 1 chr3B.!!$R1 701
9 TraesCS4A01G104500 chr2D 450206871 450207551 680 False 636.0 636 83.7210 3379 4058 1 chr2D.!!$F1 679
10 TraesCS4A01G104500 chr7D 235399349 235399955 606 False 604.0 604 84.8040 3414 4019 1 chr7D.!!$F1 605
11 TraesCS4A01G104500 chr5A 430514066 430514759 693 False 551.0 551 81.2680 3377 4058 1 chr5A.!!$F1 681

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
669 708 0.105246 CCTGCCTCCTACCATCCTCT 60.105 60.0 0.00 0.0 0.0 3.69 F
921 1001 0.109039 GGACGCACACCTCTTCTCTC 60.109 60.0 0.00 0.0 0.0 3.20 F
1663 1747 0.109039 GACAGAGGAGAGCAACGGTC 60.109 60.0 0.00 0.0 0.0 4.79 F
1703 1787 0.109272 GTCGATTCGGTGCTGTCAGA 60.109 55.0 3.32 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2498 2697 0.038892 ACAACGCCGACAATACGTCT 60.039 50.000 0.00 0.00 42.98 4.18 R
2726 2925 0.461135 GCTCTTCTCTCCTCCTGCAG 59.539 60.000 6.78 6.78 0.00 4.41 R
2732 2932 0.461135 CAGGCTGCTCTTCTCTCCTC 59.539 60.000 0.00 0.00 0.00 3.71 R
3096 3327 1.133982 AGCATCGCAACAACAACAACA 59.866 42.857 0.00 0.00 0.00 3.33 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.419381 AAAACCCACGGGCAAAAGAT 58.581 45.000 0.69 0.00 39.32 2.40
41 42 2.296073 AAACCCACGGGCAAAAGATA 57.704 45.000 0.69 0.00 39.32 1.98
42 43 2.296073 AACCCACGGGCAAAAGATAA 57.704 45.000 0.69 0.00 39.32 1.75
43 44 2.525105 ACCCACGGGCAAAAGATAAT 57.475 45.000 0.69 0.00 39.32 1.28
44 45 3.655615 ACCCACGGGCAAAAGATAATA 57.344 42.857 0.69 0.00 39.32 0.98
45 46 3.551846 ACCCACGGGCAAAAGATAATAG 58.448 45.455 0.69 0.00 39.32 1.73
46 47 3.053917 ACCCACGGGCAAAAGATAATAGT 60.054 43.478 0.69 0.00 39.32 2.12
48 49 4.514066 CCCACGGGCAAAAGATAATAGTAC 59.486 45.833 0.00 0.00 0.00 2.73
49 50 5.365619 CCACGGGCAAAAGATAATAGTACT 58.634 41.667 0.00 0.00 0.00 2.73
50 51 6.463331 CCCACGGGCAAAAGATAATAGTACTA 60.463 42.308 4.77 4.77 0.00 1.82
51 52 6.423001 CCACGGGCAAAAGATAATAGTACTAC 59.577 42.308 4.31 0.00 0.00 2.73
52 53 6.143438 CACGGGCAAAAGATAATAGTACTACG 59.857 42.308 4.31 2.16 0.00 3.51
53 54 5.118203 CGGGCAAAAGATAATAGTACTACGC 59.882 44.000 4.31 0.00 0.00 4.42
54 55 5.118203 GGGCAAAAGATAATAGTACTACGCG 59.882 44.000 3.53 3.53 0.00 6.01
55 56 5.118203 GGCAAAAGATAATAGTACTACGCGG 59.882 44.000 12.47 0.00 0.00 6.46
56 57 5.388164 GCAAAAGATAATAGTACTACGCGGC 60.388 44.000 12.47 0.00 0.00 6.53
57 58 5.443185 AAAGATAATAGTACTACGCGGCA 57.557 39.130 12.47 0.00 0.00 5.69
58 59 5.443185 AAGATAATAGTACTACGCGGCAA 57.557 39.130 12.47 0.00 0.00 4.52
140 141 1.266989 CCCTTCACGTGGCTTTCTTTC 59.733 52.381 17.00 0.00 0.00 2.62
141 142 2.222027 CCTTCACGTGGCTTTCTTTCT 58.778 47.619 17.00 0.00 0.00 2.52
142 143 2.031682 CCTTCACGTGGCTTTCTTTCTG 60.032 50.000 17.00 0.00 0.00 3.02
143 144 0.944386 TCACGTGGCTTTCTTTCTGC 59.056 50.000 17.00 0.00 0.00 4.26
198 199 0.532862 ATTGCAGATTACGAGGCCCG 60.533 55.000 11.48 11.48 45.44 6.13
284 289 8.154203 TCTTTTATCAGTGGAATCAGTGTTACA 58.846 33.333 0.00 0.00 43.12 2.41
303 308 1.741706 CAATCTCAGTCCCACATGCAC 59.258 52.381 0.00 0.00 0.00 4.57
304 309 0.254178 ATCTCAGTCCCACATGCACC 59.746 55.000 0.00 0.00 0.00 5.01
422 459 0.901124 GCCTCTCATGTGACTCCTGT 59.099 55.000 0.00 0.00 0.00 4.00
436 473 7.378966 TGTGACTCCTGTATTCAGAGTTTTAG 58.621 38.462 0.12 0.00 43.76 1.85
465 502 4.990526 AGGTGAACCATGGGATCATTATC 58.009 43.478 21.18 11.05 36.89 1.75
482 520 8.985315 ATCATTATCCTTCTCAGTTTGCAATA 57.015 30.769 0.00 0.00 0.00 1.90
509 547 5.238650 CCTACGTTGGAGAAAACTGTGAAAT 59.761 40.000 10.83 0.00 0.00 2.17
528 566 8.311109 TGTGAAATGCTGAAGAATGTACTACTA 58.689 33.333 0.00 0.00 0.00 1.82
529 567 8.596380 GTGAAATGCTGAAGAATGTACTACTAC 58.404 37.037 0.00 0.00 0.00 2.73
530 568 7.764443 TGAAATGCTGAAGAATGTACTACTACC 59.236 37.037 0.00 0.00 0.00 3.18
664 703 1.496429 CAAATCCCTGCCTCCTACCAT 59.504 52.381 0.00 0.00 0.00 3.55
668 707 1.124477 CCCTGCCTCCTACCATCCTC 61.124 65.000 0.00 0.00 0.00 3.71
669 708 0.105246 CCTGCCTCCTACCATCCTCT 60.105 60.000 0.00 0.00 0.00 3.69
670 709 1.337118 CTGCCTCCTACCATCCTCTC 58.663 60.000 0.00 0.00 0.00 3.20
671 710 0.468214 TGCCTCCTACCATCCTCTCG 60.468 60.000 0.00 0.00 0.00 4.04
672 711 0.178987 GCCTCCTACCATCCTCTCGA 60.179 60.000 0.00 0.00 0.00 4.04
673 712 1.611519 CCTCCTACCATCCTCTCGAC 58.388 60.000 0.00 0.00 0.00 4.20
700 751 1.577328 CTTCTCACGCCCGCAACAAT 61.577 55.000 0.00 0.00 0.00 2.71
712 779 2.159366 CCGCAACAATCGTAGAGAGAGT 60.159 50.000 0.00 0.00 43.63 3.24
714 781 3.182967 GCAACAATCGTAGAGAGAGTGG 58.817 50.000 0.00 0.00 43.63 4.00
716 783 3.367646 ACAATCGTAGAGAGAGTGGGA 57.632 47.619 0.00 0.00 43.63 4.37
920 1000 1.867919 CGGACGCACACCTCTTCTCT 61.868 60.000 0.00 0.00 0.00 3.10
921 1001 0.109039 GGACGCACACCTCTTCTCTC 60.109 60.000 0.00 0.00 0.00 3.20
922 1002 0.109039 GACGCACACCTCTTCTCTCC 60.109 60.000 0.00 0.00 0.00 3.71
923 1003 1.216710 CGCACACCTCTTCTCTCCC 59.783 63.158 0.00 0.00 0.00 4.30
924 1004 1.599576 GCACACCTCTTCTCTCCCC 59.400 63.158 0.00 0.00 0.00 4.81
925 1005 1.904990 GCACACCTCTTCTCTCCCCC 61.905 65.000 0.00 0.00 0.00 5.40
1011 1091 0.460284 CGGGAGGAATGTCTGAACCG 60.460 60.000 0.00 0.00 0.00 4.44
1063 1143 1.635487 AGCCACCTTCTTGGATTGCTA 59.365 47.619 0.00 0.00 39.24 3.49
1065 1145 2.019984 CCACCTTCTTGGATTGCTAGC 58.980 52.381 8.10 8.10 39.24 3.42
1066 1146 2.356535 CCACCTTCTTGGATTGCTAGCT 60.357 50.000 17.23 0.00 39.24 3.32
1085 1165 0.472471 TGGGTGCTTTCTCGGTTTCT 59.528 50.000 0.00 0.00 0.00 2.52
1167 1247 1.589993 CGAGCTGCGTGTAGATGGG 60.590 63.158 0.00 0.00 34.64 4.00
1168 1248 1.227380 GAGCTGCGTGTAGATGGGG 60.227 63.158 0.00 0.00 0.00 4.96
1171 1251 1.144057 CTGCGTGTAGATGGGGGTC 59.856 63.158 0.00 0.00 0.00 4.46
1243 1324 1.529244 GGATCGCAGGGGAAATGGG 60.529 63.158 0.00 0.00 0.00 4.00
1418 1502 2.865079 TGCGTCAACCCCTTTAATTCA 58.135 42.857 0.00 0.00 0.00 2.57
1419 1503 2.554893 TGCGTCAACCCCTTTAATTCAC 59.445 45.455 0.00 0.00 0.00 3.18
1440 1524 1.965643 ACTGTTGGTTCGGTACAGCTA 59.034 47.619 0.00 0.00 42.28 3.32
1653 1737 4.200283 GCGCCGGAGACAGAGGAG 62.200 72.222 10.31 0.00 0.00 3.69
1654 1738 2.438614 CGCCGGAGACAGAGGAGA 60.439 66.667 5.05 0.00 0.00 3.71
1655 1739 2.477176 CGCCGGAGACAGAGGAGAG 61.477 68.421 5.05 0.00 0.00 3.20
1656 1740 2.781158 GCCGGAGACAGAGGAGAGC 61.781 68.421 5.05 0.00 0.00 4.09
1657 1741 1.379176 CCGGAGACAGAGGAGAGCA 60.379 63.158 0.00 0.00 0.00 4.26
1658 1742 0.967887 CCGGAGACAGAGGAGAGCAA 60.968 60.000 0.00 0.00 0.00 3.91
1659 1743 0.172352 CGGAGACAGAGGAGAGCAAC 59.828 60.000 0.00 0.00 0.00 4.17
1660 1744 0.172352 GGAGACAGAGGAGAGCAACG 59.828 60.000 0.00 0.00 0.00 4.10
1662 1746 0.540830 AGACAGAGGAGAGCAACGGT 60.541 55.000 0.00 0.00 0.00 4.83
1663 1747 0.109039 GACAGAGGAGAGCAACGGTC 60.109 60.000 0.00 0.00 0.00 4.79
1664 1748 1.216710 CAGAGGAGAGCAACGGTCC 59.783 63.158 0.00 0.00 0.00 4.46
1665 1749 1.077625 AGAGGAGAGCAACGGTCCT 59.922 57.895 0.00 0.00 43.76 3.85
1666 1750 1.216710 GAGGAGAGCAACGGTCCTG 59.783 63.158 0.00 0.00 41.00 3.86
1667 1751 2.435059 GGAGAGCAACGGTCCTGC 60.435 66.667 0.00 0.00 40.24 4.85
1668 1752 2.343758 GAGAGCAACGGTCCTGCA 59.656 61.111 7.48 0.00 42.48 4.41
1669 1753 1.739562 GAGAGCAACGGTCCTGCAG 60.740 63.158 6.78 6.78 42.48 4.41
1670 1754 2.031163 GAGCAACGGTCCTGCAGT 59.969 61.111 13.81 0.00 42.48 4.40
1671 1755 1.185618 AGAGCAACGGTCCTGCAGTA 61.186 55.000 13.81 0.00 42.48 2.74
1692 1776 2.508891 GCTGAGCACCGTCGATTCG 61.509 63.158 0.00 0.00 0.00 3.34
1701 1785 1.443702 CGTCGATTCGGTGCTGTCA 60.444 57.895 6.18 0.00 0.00 3.58
1703 1787 0.109272 GTCGATTCGGTGCTGTCAGA 60.109 55.000 3.32 0.00 0.00 3.27
1709 1793 2.262915 GGTGCTGTCAGACCCTCG 59.737 66.667 3.32 0.00 0.00 4.63
1710 1794 2.433318 GTGCTGTCAGACCCTCGC 60.433 66.667 3.32 0.00 0.00 5.03
1711 1795 4.056125 TGCTGTCAGACCCTCGCG 62.056 66.667 3.32 0.00 0.00 5.87
1713 1797 4.803426 CTGTCAGACCCTCGCGCC 62.803 72.222 0.00 0.00 0.00 6.53
1966 2059 1.885887 GCAGGTTTACAATGAGTGCCA 59.114 47.619 0.00 0.00 0.00 4.92
2036 2223 8.863872 TTGCTATAGGGATAATTAGCCTTTTC 57.136 34.615 18.82 2.87 31.02 2.29
2038 2225 8.322091 TGCTATAGGGATAATTAGCCTTTTCTC 58.678 37.037 18.82 1.80 31.02 2.87
2044 2236 6.272558 GGGATAATTAGCCTTTTCTCCTAGGA 59.727 42.308 18.82 11.98 33.13 2.94
2082 2278 5.529800 TCCTAAGTTTGTGCAGAGTTTTACC 59.470 40.000 0.00 0.00 0.00 2.85
2147 2346 6.571605 TCACATGTGTGTTTTCATCATGTTT 58.428 32.000 24.63 0.00 45.55 2.83
2161 2360 8.984891 TTCATCATGTTTTTAATGTTAGGCTG 57.015 30.769 0.00 0.00 0.00 4.85
2163 2362 6.909550 TCATGTTTTTAATGTTAGGCTGGT 57.090 33.333 0.00 0.00 0.00 4.00
2164 2363 7.296628 TCATGTTTTTAATGTTAGGCTGGTT 57.703 32.000 0.00 0.00 0.00 3.67
2166 2365 6.472686 TGTTTTTAATGTTAGGCTGGTTGT 57.527 33.333 0.00 0.00 0.00 3.32
2167 2366 7.584122 TGTTTTTAATGTTAGGCTGGTTGTA 57.416 32.000 0.00 0.00 0.00 2.41
2169 2368 8.643324 TGTTTTTAATGTTAGGCTGGTTGTAAT 58.357 29.630 0.00 0.00 0.00 1.89
2170 2369 8.921670 GTTTTTAATGTTAGGCTGGTTGTAATG 58.078 33.333 0.00 0.00 0.00 1.90
2171 2370 6.767524 TTAATGTTAGGCTGGTTGTAATGG 57.232 37.500 0.00 0.00 0.00 3.16
2172 2371 3.080300 TGTTAGGCTGGTTGTAATGGG 57.920 47.619 0.00 0.00 0.00 4.00
2173 2372 2.291282 TGTTAGGCTGGTTGTAATGGGG 60.291 50.000 0.00 0.00 0.00 4.96
2174 2373 1.974028 TAGGCTGGTTGTAATGGGGA 58.026 50.000 0.00 0.00 0.00 4.81
2175 2374 0.625849 AGGCTGGTTGTAATGGGGAG 59.374 55.000 0.00 0.00 0.00 4.30
2176 2375 0.331616 GGCTGGTTGTAATGGGGAGT 59.668 55.000 0.00 0.00 0.00 3.85
2177 2376 1.562475 GGCTGGTTGTAATGGGGAGTA 59.438 52.381 0.00 0.00 0.00 2.59
2178 2377 2.174854 GGCTGGTTGTAATGGGGAGTAT 59.825 50.000 0.00 0.00 0.00 2.12
2179 2378 3.477530 GCTGGTTGTAATGGGGAGTATC 58.522 50.000 0.00 0.00 0.00 2.24
2180 2379 3.118038 GCTGGTTGTAATGGGGAGTATCA 60.118 47.826 0.00 0.00 36.25 2.15
2181 2380 4.446311 GCTGGTTGTAATGGGGAGTATCAT 60.446 45.833 0.00 0.00 36.25 2.45
2182 2381 5.221843 GCTGGTTGTAATGGGGAGTATCATA 60.222 44.000 0.00 0.00 36.25 2.15
2183 2382 6.522459 GCTGGTTGTAATGGGGAGTATCATAT 60.522 42.308 0.00 0.00 36.25 1.78
2184 2383 7.311046 GCTGGTTGTAATGGGGAGTATCATATA 60.311 40.741 0.00 0.00 36.25 0.86
2185 2384 7.913789 TGGTTGTAATGGGGAGTATCATATAC 58.086 38.462 0.00 0.00 36.25 1.47
2186 2385 7.737607 TGGTTGTAATGGGGAGTATCATATACT 59.262 37.037 0.00 0.00 36.25 2.12
2187 2386 9.263446 GGTTGTAATGGGGAGTATCATATACTA 57.737 37.037 0.00 0.00 36.25 1.82
2227 2426 8.366359 TGCATATGATACTGGTGTATGATACT 57.634 34.615 6.97 0.00 37.80 2.12
2228 2427 9.474313 TGCATATGATACTGGTGTATGATACTA 57.526 33.333 6.97 0.00 37.80 1.82
2234 2433 9.244292 TGATACTGGTGTATGATACTATCTTCC 57.756 37.037 4.03 0.00 39.29 3.46
2235 2434 9.469097 GATACTGGTGTATGATACTATCTTCCT 57.531 37.037 4.03 0.00 39.29 3.36
2238 2437 9.830186 ACTGGTGTATGATACTATCTTCCTAAT 57.170 33.333 4.03 0.00 0.00 1.73
2240 2439 8.531982 TGGTGTATGATACTATCTTCCTAATGC 58.468 37.037 4.03 0.00 0.00 3.56
2241 2440 8.531982 GGTGTATGATACTATCTTCCTAATGCA 58.468 37.037 4.03 0.00 0.00 3.96
2301 2500 9.838975 TTTATTGTTATGCATGACACAAAGTAG 57.161 29.630 22.61 0.00 33.02 2.57
2302 2501 5.295431 TGTTATGCATGACACAAAGTAGC 57.705 39.130 19.43 0.00 0.00 3.58
2303 2502 4.759183 TGTTATGCATGACACAAAGTAGCA 59.241 37.500 19.43 0.00 37.13 3.49
2304 2503 5.415389 TGTTATGCATGACACAAAGTAGCAT 59.585 36.000 19.43 0.00 42.36 3.79
2305 2504 6.597280 TGTTATGCATGACACAAAGTAGCATA 59.403 34.615 19.43 0.00 41.02 3.14
2306 2505 7.120432 TGTTATGCATGACACAAAGTAGCATAA 59.880 33.333 19.43 11.53 44.38 1.90
2307 2506 5.295431 TGCATGACACAAAGTAGCATAAC 57.705 39.130 0.00 0.00 30.65 1.89
2308 2507 4.759183 TGCATGACACAAAGTAGCATAACA 59.241 37.500 0.00 0.00 30.65 2.41
2309 2508 5.415389 TGCATGACACAAAGTAGCATAACAT 59.585 36.000 0.00 0.00 30.65 2.71
2310 2509 6.072008 TGCATGACACAAAGTAGCATAACATT 60.072 34.615 0.00 0.00 30.65 2.71
2311 2510 6.808212 GCATGACACAAAGTAGCATAACATTT 59.192 34.615 0.00 0.00 0.00 2.32
2312 2511 7.967854 GCATGACACAAAGTAGCATAACATTTA 59.032 33.333 0.00 0.00 0.00 1.40
2358 2557 7.943079 TGATATTGCATCCTCTTTTTCTTCA 57.057 32.000 0.00 0.00 0.00 3.02
2359 2558 8.529424 TGATATTGCATCCTCTTTTTCTTCAT 57.471 30.769 0.00 0.00 0.00 2.57
2360 2559 8.974238 TGATATTGCATCCTCTTTTTCTTCATT 58.026 29.630 0.00 0.00 0.00 2.57
2361 2560 9.813446 GATATTGCATCCTCTTTTTCTTCATTT 57.187 29.630 0.00 0.00 0.00 2.32
2365 2564 8.991243 TGCATCCTCTTTTTCTTCATTTAATG 57.009 30.769 0.00 0.00 0.00 1.90
2366 2565 7.546667 TGCATCCTCTTTTTCTTCATTTAATGC 59.453 33.333 0.00 0.00 35.15 3.56
2367 2566 7.763071 GCATCCTCTTTTTCTTCATTTAATGCT 59.237 33.333 0.00 0.00 32.64 3.79
2375 2574 9.638239 TTTTTCTTCATTTAATGCTATGACACC 57.362 29.630 0.00 0.00 30.89 4.16
2376 2575 8.579850 TTTCTTCATTTAATGCTATGACACCT 57.420 30.769 0.00 0.00 30.89 4.00
2377 2576 7.792374 TCTTCATTTAATGCTATGACACCTC 57.208 36.000 0.00 0.00 30.89 3.85
2378 2577 7.337938 TCTTCATTTAATGCTATGACACCTCA 58.662 34.615 0.00 0.00 30.89 3.86
2379 2578 7.994911 TCTTCATTTAATGCTATGACACCTCAT 59.005 33.333 0.00 0.00 40.47 2.90
2380 2579 7.734924 TCATTTAATGCTATGACACCTCATC 57.265 36.000 0.00 0.00 38.21 2.92
2381 2580 7.281841 TCATTTAATGCTATGACACCTCATCA 58.718 34.615 0.00 0.00 38.21 3.07
2382 2581 7.774625 TCATTTAATGCTATGACACCTCATCAA 59.225 33.333 0.00 0.00 38.21 2.57
2383 2582 7.936496 TTTAATGCTATGACACCTCATCAAA 57.064 32.000 0.00 0.00 38.21 2.69
2384 2583 7.936496 TTAATGCTATGACACCTCATCAAAA 57.064 32.000 0.00 0.00 38.21 2.44
2385 2584 8.523915 TTAATGCTATGACACCTCATCAAAAT 57.476 30.769 0.00 0.00 38.21 1.82
2386 2585 7.414222 AATGCTATGACACCTCATCAAAATT 57.586 32.000 0.00 0.00 38.21 1.82
2387 2586 6.198650 TGCTATGACACCTCATCAAAATTG 57.801 37.500 0.00 0.00 38.21 2.32
2388 2587 5.039333 GCTATGACACCTCATCAAAATTGC 58.961 41.667 0.00 0.00 38.21 3.56
2389 2588 5.163581 GCTATGACACCTCATCAAAATTGCT 60.164 40.000 0.00 0.00 38.21 3.91
2390 2589 5.733620 ATGACACCTCATCAAAATTGCTT 57.266 34.783 0.00 0.00 30.64 3.91
2391 2590 6.839124 ATGACACCTCATCAAAATTGCTTA 57.161 33.333 0.00 0.00 30.64 3.09
2392 2591 6.647334 TGACACCTCATCAAAATTGCTTAA 57.353 33.333 0.00 0.00 0.00 1.85
2393 2592 7.230849 TGACACCTCATCAAAATTGCTTAAT 57.769 32.000 0.00 0.00 0.00 1.40
2394 2593 7.669427 TGACACCTCATCAAAATTGCTTAATT 58.331 30.769 0.00 0.00 0.00 1.40
2395 2594 7.599621 TGACACCTCATCAAAATTGCTTAATTG 59.400 33.333 0.00 0.00 0.00 2.32
2396 2595 6.875195 ACACCTCATCAAAATTGCTTAATTGG 59.125 34.615 0.00 0.00 0.00 3.16
2397 2596 6.875195 CACCTCATCAAAATTGCTTAATTGGT 59.125 34.615 0.00 0.00 0.00 3.67
2398 2597 8.034215 CACCTCATCAAAATTGCTTAATTGGTA 58.966 33.333 0.00 0.00 0.00 3.25
2399 2598 8.761689 ACCTCATCAAAATTGCTTAATTGGTAT 58.238 29.630 0.00 0.00 0.00 2.73
2400 2599 9.037737 CCTCATCAAAATTGCTTAATTGGTATG 57.962 33.333 0.00 0.00 0.00 2.39
2401 2600 8.422973 TCATCAAAATTGCTTAATTGGTATGC 57.577 30.769 0.00 0.00 34.25 3.14
2402 2601 8.039538 TCATCAAAATTGCTTAATTGGTATGCA 58.960 29.630 0.00 0.00 40.19 3.96
2403 2602 8.832521 CATCAAAATTGCTTAATTGGTATGCAT 58.167 29.630 3.79 3.79 41.18 3.96
2404 2603 8.199176 TCAAAATTGCTTAATTGGTATGCATG 57.801 30.769 10.16 0.00 41.18 4.06
2405 2604 8.039538 TCAAAATTGCTTAATTGGTATGCATGA 58.960 29.630 10.16 0.00 41.18 3.07
2406 2605 8.832521 CAAAATTGCTTAATTGGTATGCATGAT 58.167 29.630 10.16 0.00 41.18 2.45
2408 2607 9.480053 AAATTGCTTAATTGGTATGCATGATAC 57.520 29.630 10.16 0.00 41.18 2.24
2409 2608 7.822161 TTGCTTAATTGGTATGCATGATACT 57.178 32.000 10.16 0.00 41.18 2.12
2410 2609 8.916628 TTGCTTAATTGGTATGCATGATACTA 57.083 30.769 10.16 0.00 41.18 1.82
2411 2610 8.552083 TGCTTAATTGGTATGCATGATACTAG 57.448 34.615 10.16 0.00 37.81 2.57
2412 2611 7.119699 TGCTTAATTGGTATGCATGATACTAGC 59.880 37.037 10.16 9.12 37.81 3.42
2413 2612 7.335422 GCTTAATTGGTATGCATGATACTAGCT 59.665 37.037 10.16 0.00 37.64 3.32
2414 2613 9.875691 CTTAATTGGTATGCATGATACTAGCTA 57.124 33.333 10.16 0.00 37.64 3.32
2416 2615 8.728337 AATTGGTATGCATGATACTAGCTATG 57.272 34.615 10.16 0.00 37.64 2.23
2417 2616 7.480760 TTGGTATGCATGATACTAGCTATGA 57.519 36.000 10.16 0.00 37.64 2.15
2418 2617 7.666063 TGGTATGCATGATACTAGCTATGAT 57.334 36.000 10.16 0.00 37.64 2.45
2419 2618 8.766994 TGGTATGCATGATACTAGCTATGATA 57.233 34.615 10.16 0.00 37.64 2.15
2420 2619 9.372189 TGGTATGCATGATACTAGCTATGATAT 57.628 33.333 10.16 0.00 37.64 1.63
2424 2623 8.082672 TGCATGATACTAGCTATGATATTGGT 57.917 34.615 0.00 0.00 0.00 3.67
2425 2624 9.200817 TGCATGATACTAGCTATGATATTGGTA 57.799 33.333 0.00 0.00 0.00 3.25
2429 2628 9.936329 TGATACTAGCTATGATATTGGTATGGA 57.064 33.333 0.00 0.00 0.00 3.41
2431 2630 7.667575 ACTAGCTATGATATTGGTATGGAGG 57.332 40.000 0.00 0.00 0.00 4.30
2432 2631 5.965033 AGCTATGATATTGGTATGGAGGG 57.035 43.478 0.00 0.00 0.00 4.30
2433 2632 5.603750 AGCTATGATATTGGTATGGAGGGA 58.396 41.667 0.00 0.00 0.00 4.20
2434 2633 6.032039 AGCTATGATATTGGTATGGAGGGAA 58.968 40.000 0.00 0.00 0.00 3.97
2435 2634 6.680197 AGCTATGATATTGGTATGGAGGGAAT 59.320 38.462 0.00 0.00 0.00 3.01
2436 2635 7.851451 AGCTATGATATTGGTATGGAGGGAATA 59.149 37.037 0.00 0.00 0.00 1.75
2437 2636 8.153550 GCTATGATATTGGTATGGAGGGAATAG 58.846 40.741 0.00 0.00 0.00 1.73
2442 2641 5.499004 TTGGTATGGAGGGAATAGTATGC 57.501 43.478 0.00 0.00 0.00 3.14
2472 2671 4.580167 TGCCTATGTCAGTGGAATAATTGC 59.420 41.667 0.00 0.00 0.00 3.56
2478 2677 6.751514 TGTCAGTGGAATAATTGCGTTTAT 57.248 33.333 0.00 0.00 0.00 1.40
2479 2678 7.851387 TGTCAGTGGAATAATTGCGTTTATA 57.149 32.000 0.00 0.00 0.00 0.98
2480 2679 8.445275 TGTCAGTGGAATAATTGCGTTTATAT 57.555 30.769 0.00 0.00 0.00 0.86
2481 2680 9.549078 TGTCAGTGGAATAATTGCGTTTATATA 57.451 29.630 0.00 0.00 0.00 0.86
2483 2682 9.772973 TCAGTGGAATAATTGCGTTTATATAGT 57.227 29.630 0.00 0.00 0.00 2.12
2520 2719 1.623081 CGTATTGTCGGCGTTGTGCT 61.623 55.000 6.85 0.00 45.43 4.40
2526 2725 1.737735 TCGGCGTTGTGCTCATCTG 60.738 57.895 6.85 0.00 45.43 2.90
2527 2726 2.029288 CGGCGTTGTGCTCATCTGT 61.029 57.895 0.00 0.00 45.43 3.41
2528 2727 0.735978 CGGCGTTGTGCTCATCTGTA 60.736 55.000 0.00 0.00 45.43 2.74
2539 2738 4.019858 TGCTCATCTGTAGTACTTCAGCT 58.980 43.478 21.21 11.57 0.00 4.24
2545 2744 4.417437 TCTGTAGTACTTCAGCTTCCCTT 58.583 43.478 21.21 0.00 0.00 3.95
2567 2766 4.538746 TTTTTGTGTTCCGGACCTTTTT 57.461 36.364 1.83 0.00 0.00 1.94
2568 2767 5.656213 TTTTTGTGTTCCGGACCTTTTTA 57.344 34.783 1.83 0.00 0.00 1.52
2569 2768 5.656213 TTTTGTGTTCCGGACCTTTTTAA 57.344 34.783 1.83 0.00 0.00 1.52
2596 2795 2.431057 AGGATAGGAAGCCGTTGTGTAG 59.569 50.000 0.00 0.00 35.82 2.74
2604 2803 4.521010 GAAGCCGTTGTGTAGTTTGTTAC 58.479 43.478 0.00 0.00 0.00 2.50
2608 2807 2.540931 CGTTGTGTAGTTTGTTACGCCT 59.459 45.455 0.00 0.00 34.04 5.52
2625 2824 3.452627 ACGCCTCTCCATTGATTCTTACT 59.547 43.478 0.00 0.00 0.00 2.24
2626 2825 4.054671 CGCCTCTCCATTGATTCTTACTC 58.945 47.826 0.00 0.00 0.00 2.59
2627 2826 4.384940 GCCTCTCCATTGATTCTTACTCC 58.615 47.826 0.00 0.00 0.00 3.85
2628 2827 4.141620 GCCTCTCCATTGATTCTTACTCCA 60.142 45.833 0.00 0.00 0.00 3.86
2629 2828 5.363939 CCTCTCCATTGATTCTTACTCCAC 58.636 45.833 0.00 0.00 0.00 4.02
2630 2829 5.130145 CCTCTCCATTGATTCTTACTCCACT 59.870 44.000 0.00 0.00 0.00 4.00
2631 2830 6.325028 CCTCTCCATTGATTCTTACTCCACTA 59.675 42.308 0.00 0.00 0.00 2.74
2632 2831 7.353414 TCTCCATTGATTCTTACTCCACTAG 57.647 40.000 0.00 0.00 0.00 2.57
2678 2877 8.276252 TCTTTTTATAGCACCCACTATGTTTC 57.724 34.615 0.00 0.00 34.66 2.78
2707 2906 1.672363 CATACCGATTGTGCTGTGCAT 59.328 47.619 0.00 0.00 41.91 3.96
2725 2924 6.971602 TGTGCATAACTAACGGAATTTTTCA 58.028 32.000 0.00 0.00 0.00 2.69
2726 2925 6.858993 TGTGCATAACTAACGGAATTTTTCAC 59.141 34.615 0.00 0.00 0.00 3.18
2732 2932 3.369546 AACGGAATTTTTCACTGCAGG 57.630 42.857 19.93 7.28 0.00 4.85
2888 3102 6.165577 CAAGGAGAAGGAGAAAGAAGAGAAG 58.834 44.000 0.00 0.00 0.00 2.85
3029 3255 4.467107 AGGAGGTCGGAGGGGCTC 62.467 72.222 0.00 0.00 0.00 4.70
3070 3296 2.743718 CCACTGACCGAGCCTGTT 59.256 61.111 0.00 0.00 0.00 3.16
3071 3297 1.374758 CCACTGACCGAGCCTGTTC 60.375 63.158 0.00 0.00 0.00 3.18
3072 3298 1.668294 CACTGACCGAGCCTGTTCT 59.332 57.895 0.00 0.00 0.00 3.01
3073 3299 0.668706 CACTGACCGAGCCTGTTCTG 60.669 60.000 0.00 0.00 0.00 3.02
3074 3300 1.115930 ACTGACCGAGCCTGTTCTGT 61.116 55.000 0.00 0.00 0.00 3.41
3087 3318 3.812053 CCTGTTCTGTTCTGGTCTCAAAG 59.188 47.826 0.00 0.00 0.00 2.77
3095 3326 3.795688 TCTGGTCTCAAAGGCATCTTT 57.204 42.857 0.00 0.00 43.41 2.52
3096 3327 4.104383 TCTGGTCTCAAAGGCATCTTTT 57.896 40.909 0.00 0.00 40.92 2.27
3097 3328 3.822735 TCTGGTCTCAAAGGCATCTTTTG 59.177 43.478 0.00 0.00 40.92 2.44
3115 3346 1.554392 TGTTGTTGTTGTTGCGATGC 58.446 45.000 0.00 0.00 0.00 3.91
3136 3373 3.338249 CTCTCAAAAGCATCCCGAGAAA 58.662 45.455 0.00 0.00 32.61 2.52
3167 3404 0.028770 GTGTGTTGCACTTGCGCTTA 59.971 50.000 9.73 0.00 45.83 3.09
3209 3446 4.848562 TCTACAGCGTTGGGAGTATATG 57.151 45.455 3.74 0.00 0.00 1.78
3235 3476 4.329256 GGAATAAGGCTTTACTCGTGTGAC 59.671 45.833 4.45 0.00 0.00 3.67
3290 3533 5.705609 AGTGGATTCCATGTGTTGTTTAC 57.294 39.130 9.01 0.00 35.28 2.01
3299 3542 5.464057 TCCATGTGTTGTTTACTAGTGTTCG 59.536 40.000 5.39 0.00 0.00 3.95
3314 3557 2.552315 GTGTTCGAAAGCAAAGGGATGA 59.448 45.455 0.00 0.00 0.00 2.92
3315 3558 2.552315 TGTTCGAAAGCAAAGGGATGAC 59.448 45.455 0.00 0.00 0.00 3.06
3316 3559 2.814336 GTTCGAAAGCAAAGGGATGACT 59.186 45.455 0.00 0.00 0.00 3.41
3317 3560 3.973206 TCGAAAGCAAAGGGATGACTA 57.027 42.857 0.00 0.00 0.00 2.59
3318 3561 4.280436 TCGAAAGCAAAGGGATGACTAA 57.720 40.909 0.00 0.00 0.00 2.24
3319 3562 4.843728 TCGAAAGCAAAGGGATGACTAAT 58.156 39.130 0.00 0.00 0.00 1.73
3320 3563 5.984725 TCGAAAGCAAAGGGATGACTAATA 58.015 37.500 0.00 0.00 0.00 0.98
3321 3564 5.815740 TCGAAAGCAAAGGGATGACTAATAC 59.184 40.000 0.00 0.00 0.00 1.89
3322 3565 5.584649 CGAAAGCAAAGGGATGACTAATACA 59.415 40.000 0.00 0.00 0.00 2.29
3323 3566 6.456988 CGAAAGCAAAGGGATGACTAATACAC 60.457 42.308 0.00 0.00 0.00 2.90
3324 3567 4.781934 AGCAAAGGGATGACTAATACACC 58.218 43.478 0.00 0.00 0.00 4.16
3325 3568 3.883489 GCAAAGGGATGACTAATACACCC 59.117 47.826 0.00 0.00 37.79 4.61
3329 3572 4.371681 AGGGATGACTAATACACCCTTGT 58.628 43.478 0.00 0.00 44.27 3.16
3330 3573 4.788617 AGGGATGACTAATACACCCTTGTT 59.211 41.667 0.00 0.00 44.27 2.83
3331 3574 5.104485 AGGGATGACTAATACACCCTTGTTC 60.104 44.000 0.00 0.00 44.27 3.18
3332 3575 5.338871 GGGATGACTAATACACCCTTGTTCA 60.339 44.000 0.00 0.00 37.15 3.18
3333 3576 5.585047 GGATGACTAATACACCCTTGTTCAC 59.415 44.000 0.00 0.00 37.15 3.18
3334 3577 5.554437 TGACTAATACACCCTTGTTCACA 57.446 39.130 0.00 0.00 37.15 3.58
3335 3578 5.931294 TGACTAATACACCCTTGTTCACAA 58.069 37.500 0.00 0.00 37.15 3.33
3336 3579 6.358178 TGACTAATACACCCTTGTTCACAAA 58.642 36.000 0.00 0.00 37.15 2.83
3337 3580 7.001674 TGACTAATACACCCTTGTTCACAAAT 58.998 34.615 0.00 0.00 37.15 2.32
3338 3581 8.158132 TGACTAATACACCCTTGTTCACAAATA 58.842 33.333 0.00 0.00 37.15 1.40
3339 3582 9.174166 GACTAATACACCCTTGTTCACAAATAT 57.826 33.333 0.00 0.00 37.15 1.28
3343 3586 9.747898 AATACACCCTTGTTCACAAATATAAGA 57.252 29.630 0.00 0.00 37.15 2.10
3344 3587 9.920946 ATACACCCTTGTTCACAAATATAAGAT 57.079 29.630 0.00 0.00 37.15 2.40
3345 3588 8.055279 ACACCCTTGTTCACAAATATAAGATG 57.945 34.615 0.00 0.00 35.15 2.90
3346 3589 7.669722 ACACCCTTGTTCACAAATATAAGATGT 59.330 33.333 0.00 0.00 35.15 3.06
3347 3590 8.522830 CACCCTTGTTCACAAATATAAGATGTT 58.477 33.333 0.00 0.00 35.15 2.71
3348 3591 8.739972 ACCCTTGTTCACAAATATAAGATGTTC 58.260 33.333 0.00 0.00 35.15 3.18
3349 3592 8.190784 CCCTTGTTCACAAATATAAGATGTTCC 58.809 37.037 0.00 0.00 35.15 3.62
3350 3593 8.739039 CCTTGTTCACAAATATAAGATGTTCCA 58.261 33.333 0.00 0.00 35.15 3.53
3352 3595 9.906660 TTGTTCACAAATATAAGATGTTCCAAC 57.093 29.630 0.00 0.00 32.11 3.77
3353 3596 9.072375 TGTTCACAAATATAAGATGTTCCAACA 57.928 29.630 0.00 0.00 44.06 3.33
3369 3612 8.690203 TGTTCCAACATTTTTCTGAATCTAGA 57.310 30.769 0.00 0.00 33.17 2.43
3370 3613 9.300681 TGTTCCAACATTTTTCTGAATCTAGAT 57.699 29.630 0.00 0.00 33.17 1.98
3373 3616 9.958180 TCCAACATTTTTCTGAATCTAGATACA 57.042 29.630 5.46 0.00 0.00 2.29
3403 3646 1.856014 GCGTTTGGTTATCTGCATCGC 60.856 52.381 0.00 0.00 34.93 4.58
3409 3652 5.888691 TTGGTTATCTGCATCGCTTTTAA 57.111 34.783 0.00 0.00 0.00 1.52
3410 3653 5.888691 TGGTTATCTGCATCGCTTTTAAA 57.111 34.783 0.00 0.00 0.00 1.52
3486 3729 8.597662 AAATTAACATCTGCATATTGATTGGC 57.402 30.769 0.00 0.00 0.00 4.52
3511 3754 2.311463 TGTATCCTCTCTAGCCTGCAC 58.689 52.381 0.00 0.00 0.00 4.57
3568 3812 7.043391 GCAAACTTATTTCAGGAGAAACACAAC 60.043 37.037 0.00 0.00 45.79 3.32
3612 3856 3.053917 AGGACAGTTGTGTGGTAACCTTT 60.054 43.478 0.00 0.00 36.88 3.11
3621 3865 5.942961 TGTGTGGTAACCTTTTCCTTGATA 58.057 37.500 0.00 0.00 0.00 2.15
3672 3924 9.120538 TGAAGAACTAAACTAGAGCAACAAAAT 57.879 29.630 0.00 0.00 0.00 1.82
3705 3958 3.375922 ACAAACACAAGTCTTAACCACGG 59.624 43.478 0.00 0.00 0.00 4.94
3741 3995 6.903883 AAGCCAACATAGTACGATAAGTTG 57.096 37.500 10.39 10.39 35.27 3.16
3784 4041 1.746220 CCAACAACCAACAAGGAACGA 59.254 47.619 0.00 0.00 41.22 3.85
3802 4062 3.730761 GCAACAGCTCAGGCGGTG 61.731 66.667 0.00 0.00 45.39 4.94
3805 4065 2.807107 AACAGCTCAGGCGGTGACA 61.807 57.895 0.00 0.00 45.39 3.58
3811 4072 2.664851 CAGGCGGTGACAGCGAAA 60.665 61.111 29.64 0.00 42.41 3.46
3844 4105 2.064434 TCTTGCATTTGGTGACCACA 57.936 45.000 2.46 0.00 30.78 4.17
3903 4165 1.377725 CGGGGTCAGCTGCTTGAAT 60.378 57.895 9.47 0.00 0.00 2.57
3921 4183 3.386402 TGAATGTCAGCATGTACCCGATA 59.614 43.478 0.00 0.00 37.40 2.92
3926 4188 3.741344 GTCAGCATGTACCCGATAATGAC 59.259 47.826 0.00 0.00 37.40 3.06
3937 4199 2.159156 CCGATAATGACCTGGTGAACGA 60.159 50.000 2.82 0.00 0.00 3.85
3938 4200 3.517602 CGATAATGACCTGGTGAACGAA 58.482 45.455 2.82 0.00 0.00 3.85
3940 4202 1.523758 AATGACCTGGTGAACGAAGC 58.476 50.000 2.82 0.00 0.00 3.86
3941 4203 0.670546 ATGACCTGGTGAACGAAGCG 60.671 55.000 2.82 0.00 0.00 4.68
3954 4216 4.660938 AAGCGGAAGGTGGCCCAC 62.661 66.667 4.93 4.93 43.76 4.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 2.951642 ACCTTGCCGCGTAGTACTATTA 59.048 45.455 5.75 0.00 0.00 0.98
41 42 1.753073 ACCTTGCCGCGTAGTACTATT 59.247 47.619 5.75 0.00 0.00 1.73
42 43 1.066605 CACCTTGCCGCGTAGTACTAT 59.933 52.381 5.75 0.00 0.00 2.12
43 44 0.452987 CACCTTGCCGCGTAGTACTA 59.547 55.000 4.92 0.00 0.00 1.82
44 45 1.214589 CACCTTGCCGCGTAGTACT 59.785 57.895 4.92 0.00 0.00 2.73
45 46 0.801067 CTCACCTTGCCGCGTAGTAC 60.801 60.000 4.92 0.00 0.00 2.73
46 47 1.509463 CTCACCTTGCCGCGTAGTA 59.491 57.895 4.92 0.00 0.00 1.82
48 49 2.509336 CCTCACCTTGCCGCGTAG 60.509 66.667 4.92 0.00 0.00 3.51
49 50 3.307906 ACCTCACCTTGCCGCGTA 61.308 61.111 4.92 0.00 0.00 4.42
50 51 4.988598 CACCTCACCTTGCCGCGT 62.989 66.667 4.92 0.00 0.00 6.01
51 52 3.958147 ATCACCTCACCTTGCCGCG 62.958 63.158 0.00 0.00 0.00 6.46
52 53 2.045926 ATCACCTCACCTTGCCGC 60.046 61.111 0.00 0.00 0.00 6.53
53 54 1.746615 CCATCACCTCACCTTGCCG 60.747 63.158 0.00 0.00 0.00 5.69
54 55 1.379044 CCCATCACCTCACCTTGCC 60.379 63.158 0.00 0.00 0.00 4.52
55 56 1.379044 CCCCATCACCTCACCTTGC 60.379 63.158 0.00 0.00 0.00 4.01
56 57 1.379044 GCCCCATCACCTCACCTTG 60.379 63.158 0.00 0.00 0.00 3.61
57 58 2.616458 GGCCCCATCACCTCACCTT 61.616 63.158 0.00 0.00 0.00 3.50
58 59 3.017581 GGCCCCATCACCTCACCT 61.018 66.667 0.00 0.00 0.00 4.00
140 141 3.795041 CAGAGGGAGGGCAGGCAG 61.795 72.222 0.00 0.00 0.00 4.85
141 142 2.763988 TAACAGAGGGAGGGCAGGCA 62.764 60.000 0.00 0.00 0.00 4.75
142 143 1.348775 ATAACAGAGGGAGGGCAGGC 61.349 60.000 0.00 0.00 0.00 4.85
143 144 0.471617 CATAACAGAGGGAGGGCAGG 59.528 60.000 0.00 0.00 0.00 4.85
198 199 1.379044 CATGTGGGGTCTTGGCCTC 60.379 63.158 3.32 0.00 0.00 4.70
284 289 1.340405 GGTGCATGTGGGACTGAGATT 60.340 52.381 0.00 0.00 38.05 2.40
303 308 2.029838 AGCTAACGGAGATTGCAAGG 57.970 50.000 4.94 0.00 0.00 3.61
304 309 3.786635 ACTAGCTAACGGAGATTGCAAG 58.213 45.455 4.94 0.00 0.00 4.01
311 320 2.376109 CCCTTGACTAGCTAACGGAGA 58.624 52.381 0.00 0.00 0.00 3.71
436 473 3.963129 TCCCATGGTTCACCTTCATAAC 58.037 45.455 11.73 0.00 36.82 1.89
444 481 4.082125 GGATAATGATCCCATGGTTCACC 58.918 47.826 11.73 7.18 45.48 4.02
465 502 4.583871 AGGAGTATTGCAAACTGAGAAGG 58.416 43.478 15.84 0.00 0.00 3.46
473 510 3.998341 TCCAACGTAGGAGTATTGCAAAC 59.002 43.478 1.71 3.36 32.77 2.93
509 547 5.715279 AGTGGTAGTAGTACATTCTTCAGCA 59.285 40.000 9.89 0.00 0.00 4.41
528 566 6.540995 TCTTTCACTCTACTGTAGTAGTGGT 58.459 40.000 27.66 15.30 46.08 4.16
529 567 7.362229 CCTTCTTTCACTCTACTGTAGTAGTGG 60.362 44.444 27.66 19.52 46.08 4.00
530 568 7.531716 CCTTCTTTCACTCTACTGTAGTAGTG 58.468 42.308 25.23 25.23 46.08 2.74
670 709 1.512310 GTGAGAAGCGTCGAGGTCG 60.512 63.158 7.01 0.00 41.45 4.79
671 710 1.512310 CGTGAGAAGCGTCGAGGTC 60.512 63.158 7.01 0.00 0.00 3.85
672 711 2.561885 CGTGAGAAGCGTCGAGGT 59.438 61.111 7.01 0.00 0.00 3.85
673 712 2.876645 GCGTGAGAAGCGTCGAGG 60.877 66.667 0.00 0.00 0.00 4.63
700 751 1.487142 CCTCTCCCACTCTCTCTACGA 59.513 57.143 0.00 0.00 0.00 3.43
712 779 0.252284 GAAGGTGTCTCCCTCTCCCA 60.252 60.000 0.00 0.00 36.75 4.37
714 781 1.324005 CGGAAGGTGTCTCCCTCTCC 61.324 65.000 0.00 0.00 36.75 3.71
716 783 1.985116 GCGGAAGGTGTCTCCCTCT 60.985 63.158 0.00 0.00 36.75 3.69
896 976 3.785189 GAGGTGTGCGTCCGTGTGT 62.785 63.158 0.00 0.00 0.00 3.72
897 977 2.971428 AAGAGGTGTGCGTCCGTGTG 62.971 60.000 0.00 0.00 0.00 3.82
900 980 2.143594 GAGAAGAGGTGTGCGTCCGT 62.144 60.000 0.00 0.00 0.00 4.69
922 1002 4.387765 AGGGGAAGGGGAAGGGGG 62.388 72.222 0.00 0.00 0.00 5.40
923 1003 3.023735 CAGGGGAAGGGGAAGGGG 61.024 72.222 0.00 0.00 0.00 4.79
924 1004 3.744155 GCAGGGGAAGGGGAAGGG 61.744 72.222 0.00 0.00 0.00 3.95
925 1005 3.744155 GGCAGGGGAAGGGGAAGG 61.744 72.222 0.00 0.00 0.00 3.46
1011 1091 4.120331 GACCTGCATTGCGTGGCC 62.120 66.667 17.04 0.00 0.00 5.36
1065 1145 0.875059 GAAACCGAGAAAGCACCCAG 59.125 55.000 0.00 0.00 0.00 4.45
1066 1146 0.472471 AGAAACCGAGAAAGCACCCA 59.528 50.000 0.00 0.00 0.00 4.51
1085 1165 9.396022 GGATAAACAATCAAAGAATCTGTCCTA 57.604 33.333 0.00 0.00 36.20 2.94
1161 1241 1.012049 TCCCCATTAAGACCCCCATCT 59.988 52.381 0.00 0.00 0.00 2.90
1167 1247 2.913617 CCTAGGATCCCCATTAAGACCC 59.086 54.545 8.55 0.00 33.88 4.46
1168 1248 3.841255 CTCCTAGGATCCCCATTAAGACC 59.159 52.174 13.12 0.00 33.88 3.85
1171 1251 4.147667 TCCTCCTAGGATCCCCATTAAG 57.852 50.000 13.12 0.00 40.06 1.85
1204 1284 3.891366 CCACACAAATGAGAGAAAAGGGT 59.109 43.478 0.00 0.00 0.00 4.34
1261 1345 4.944372 GTCCTCATACCGCCGGCG 62.944 72.222 41.00 41.00 39.44 6.46
1270 1354 1.327690 GGCACTCCACCGTCCTCATA 61.328 60.000 0.00 0.00 0.00 2.15
1369 1453 2.093235 GGAATGTGGACAGAGGAGAAGG 60.093 54.545 0.00 0.00 0.00 3.46
1380 1464 1.663695 CATGGGTACGGAATGTGGAC 58.336 55.000 0.00 0.00 0.00 4.02
1418 1502 1.808891 GCTGTACCGAACCAACAGTGT 60.809 52.381 0.00 0.00 42.10 3.55
1419 1503 0.865769 GCTGTACCGAACCAACAGTG 59.134 55.000 3.89 0.00 42.10 3.66
1440 1524 7.040755 TGTCACCGAATCACAGAACAAAATTAT 60.041 33.333 0.00 0.00 0.00 1.28
1646 1730 1.216710 GGACCGTTGCTCTCCTCTG 59.783 63.158 0.00 0.00 0.00 3.35
1647 1731 1.077625 AGGACCGTTGCTCTCCTCT 59.922 57.895 0.00 0.00 27.04 3.69
1650 1734 2.435059 GCAGGACCGTTGCTCTCC 60.435 66.667 0.00 0.00 38.51 3.71
1652 1736 1.185618 TACTGCAGGACCGTTGCTCT 61.186 55.000 19.93 0.00 42.02 4.09
1653 1737 0.108138 ATACTGCAGGACCGTTGCTC 60.108 55.000 19.93 0.00 42.02 4.26
1654 1738 0.108138 GATACTGCAGGACCGTTGCT 60.108 55.000 19.93 0.00 42.02 3.91
1655 1739 1.421410 CGATACTGCAGGACCGTTGC 61.421 60.000 19.93 0.00 41.86 4.17
1656 1740 1.421410 GCGATACTGCAGGACCGTTG 61.421 60.000 15.80 0.00 34.15 4.10
1657 1741 1.153628 GCGATACTGCAGGACCGTT 60.154 57.895 15.80 0.00 34.15 4.44
1658 1742 2.052690 AGCGATACTGCAGGACCGT 61.053 57.895 15.80 0.00 37.31 4.83
1659 1743 1.589993 CAGCGATACTGCAGGACCG 60.590 63.158 19.93 14.92 40.19 4.79
1660 1744 0.249238 CTCAGCGATACTGCAGGACC 60.249 60.000 19.93 0.00 46.76 4.46
1662 1746 1.322538 TGCTCAGCGATACTGCAGGA 61.323 55.000 19.93 10.84 46.76 3.86
1663 1747 1.142531 TGCTCAGCGATACTGCAGG 59.857 57.895 19.93 0.31 46.76 4.85
1664 1748 1.150567 GGTGCTCAGCGATACTGCAG 61.151 60.000 13.48 13.48 46.76 4.41
1665 1749 1.153568 GGTGCTCAGCGATACTGCA 60.154 57.895 0.00 0.00 46.76 4.41
1666 1750 3.711348 GGTGCTCAGCGATACTGC 58.289 61.111 0.00 0.00 46.76 4.40
1692 1776 2.262915 CGAGGGTCTGACAGCACC 59.737 66.667 10.38 12.94 0.00 5.01
1715 1799 4.162690 ATCCCTTGTCCTCGCCGC 62.163 66.667 0.00 0.00 0.00 6.53
1716 1800 2.202932 CATCCCTTGTCCTCGCCG 60.203 66.667 0.00 0.00 0.00 6.46
1717 1801 2.190578 CCATCCCTTGTCCTCGCC 59.809 66.667 0.00 0.00 0.00 5.54
1839 1923 2.186384 CTCTCCTCCTTGCAGGCG 59.814 66.667 0.00 0.00 34.61 5.52
1841 1925 2.588989 GGCTCTCCTCCTTGCAGG 59.411 66.667 0.00 0.00 36.46 4.85
1857 1944 3.062466 TCAGAGTCCTCCGTGCGG 61.062 66.667 3.94 3.94 0.00 5.69
1904 1997 2.579787 GATCGACGTCACCAGCGG 60.580 66.667 17.16 0.00 0.00 5.52
1917 2010 2.568696 ACCTCACTGAATCACGATCG 57.431 50.000 14.88 14.88 0.00 3.69
2009 2196 9.828691 AAAAGGCTAATTATCCCTATAGCAAAT 57.171 29.630 1.64 0.00 41.93 2.32
2010 2197 9.297037 GAAAAGGCTAATTATCCCTATAGCAAA 57.703 33.333 1.64 0.00 41.93 3.68
2016 2203 7.896806 AGGAGAAAAGGCTAATTATCCCTAT 57.103 36.000 17.94 3.24 37.59 2.57
2019 2206 6.272558 TCCTAGGAGAAAAGGCTAATTATCCC 59.727 42.308 17.94 0.00 37.59 3.85
2024 2211 6.644308 AACTCCTAGGAGAAAAGGCTAATT 57.356 37.500 39.72 19.46 44.53 1.40
2036 2223 6.399639 GAGTAATCTGGAAACTCCTAGGAG 57.600 45.833 33.24 33.24 46.91 3.69
2044 2236 7.661847 CACAAACTTAGGAGTAATCTGGAAACT 59.338 37.037 0.00 0.00 34.21 2.66
2063 2255 5.652452 AGAAAGGTAAAACTCTGCACAAACT 59.348 36.000 0.00 0.00 0.00 2.66
2082 2278 3.118592 AGCCTAATTCCTGTCGGAGAAAG 60.119 47.826 0.00 0.00 42.75 2.62
2124 2323 6.831727 AAACATGATGAAAACACACATGTG 57.168 33.333 24.25 24.25 46.64 3.21
2137 2336 7.178274 ACCAGCCTAACATTAAAAACATGATGA 59.822 33.333 0.00 0.00 0.00 2.92
2147 2346 6.153680 CCCATTACAACCAGCCTAACATTAAA 59.846 38.462 0.00 0.00 0.00 1.52
2159 2358 4.771114 TGATACTCCCCATTACAACCAG 57.229 45.455 0.00 0.00 0.00 4.00
2161 2360 8.147244 AGTATATGATACTCCCCATTACAACC 57.853 38.462 0.00 0.00 0.00 3.77
2201 2400 8.985922 AGTATCATACACCAGTATCATATGCAT 58.014 33.333 3.79 3.79 38.88 3.96
2202 2401 8.366359 AGTATCATACACCAGTATCATATGCA 57.634 34.615 0.00 0.00 38.88 3.96
2208 2407 9.244292 GGAAGATAGTATCATACACCAGTATCA 57.756 37.037 12.66 0.00 38.88 2.15
2209 2408 9.469097 AGGAAGATAGTATCATACACCAGTATC 57.531 37.037 12.66 0.00 38.88 2.24
2212 2411 9.830186 ATTAGGAAGATAGTATCATACACCAGT 57.170 33.333 12.66 0.00 0.00 4.00
2214 2413 8.531982 GCATTAGGAAGATAGTATCATACACCA 58.468 37.037 12.66 0.00 0.00 4.17
2215 2414 8.531982 TGCATTAGGAAGATAGTATCATACACC 58.468 37.037 12.66 7.66 0.00 4.16
2275 2474 9.838975 CTACTTTGTGTCATGCATAACAATAAA 57.161 29.630 3.65 8.58 32.90 1.40
2276 2475 7.967854 GCTACTTTGTGTCATGCATAACAATAA 59.032 33.333 3.65 0.48 32.90 1.40
2277 2476 7.120432 TGCTACTTTGTGTCATGCATAACAATA 59.880 33.333 3.65 3.88 32.90 1.90
2278 2477 6.072008 TGCTACTTTGTGTCATGCATAACAAT 60.072 34.615 3.65 2.96 32.90 2.71
2279 2478 5.240403 TGCTACTTTGTGTCATGCATAACAA 59.760 36.000 3.65 10.55 0.00 2.83
2280 2479 4.759183 TGCTACTTTGTGTCATGCATAACA 59.241 37.500 0.00 0.00 0.00 2.41
2281 2480 5.295431 TGCTACTTTGTGTCATGCATAAC 57.705 39.130 0.00 0.00 0.00 1.89
2282 2481 7.120432 TGTTATGCTACTTTGTGTCATGCATAA 59.880 33.333 0.00 11.75 42.61 1.90
2283 2482 6.597280 TGTTATGCTACTTTGTGTCATGCATA 59.403 34.615 0.00 0.00 39.27 3.14
2284 2483 5.415389 TGTTATGCTACTTTGTGTCATGCAT 59.585 36.000 0.00 0.00 40.50 3.96
2285 2484 4.759183 TGTTATGCTACTTTGTGTCATGCA 59.241 37.500 0.00 0.00 35.34 3.96
2286 2485 5.295431 TGTTATGCTACTTTGTGTCATGC 57.705 39.130 0.00 0.00 0.00 4.06
2332 2531 9.631257 TGAAGAAAAAGAGGATGCAATATCATA 57.369 29.630 0.00 0.00 0.00 2.15
2333 2532 8.529424 TGAAGAAAAAGAGGATGCAATATCAT 57.471 30.769 0.00 0.00 0.00 2.45
2334 2533 7.943079 TGAAGAAAAAGAGGATGCAATATCA 57.057 32.000 0.00 0.00 0.00 2.15
2335 2534 9.813446 AAATGAAGAAAAAGAGGATGCAATATC 57.187 29.630 0.00 0.00 0.00 1.63
2339 2538 9.426837 CATTAAATGAAGAAAAAGAGGATGCAA 57.573 29.630 0.00 0.00 0.00 4.08
2340 2539 7.546667 GCATTAAATGAAGAAAAAGAGGATGCA 59.453 33.333 0.00 0.00 35.15 3.96
2341 2540 7.763071 AGCATTAAATGAAGAAAAAGAGGATGC 59.237 33.333 0.00 0.00 35.23 3.91
2349 2548 9.638239 GGTGTCATAGCATTAAATGAAGAAAAA 57.362 29.630 0.00 0.00 34.06 1.94
2350 2549 9.023962 AGGTGTCATAGCATTAAATGAAGAAAA 57.976 29.630 0.00 0.00 34.06 2.29
2351 2550 8.579850 AGGTGTCATAGCATTAAATGAAGAAA 57.420 30.769 0.00 0.00 34.06 2.52
2352 2551 7.828717 TGAGGTGTCATAGCATTAAATGAAGAA 59.171 33.333 0.00 0.00 34.06 2.52
2353 2552 7.337938 TGAGGTGTCATAGCATTAAATGAAGA 58.662 34.615 0.00 0.00 34.06 2.87
2354 2553 7.558161 TGAGGTGTCATAGCATTAAATGAAG 57.442 36.000 0.00 0.00 34.06 3.02
2355 2554 7.774625 TGATGAGGTGTCATAGCATTAAATGAA 59.225 33.333 0.00 0.00 43.92 2.57
2356 2555 7.281841 TGATGAGGTGTCATAGCATTAAATGA 58.718 34.615 0.00 0.00 43.92 2.57
2357 2556 7.500720 TGATGAGGTGTCATAGCATTAAATG 57.499 36.000 0.00 0.00 43.92 2.32
2358 2557 8.523915 TTTGATGAGGTGTCATAGCATTAAAT 57.476 30.769 0.00 0.00 43.92 1.40
2359 2558 7.936496 TTTGATGAGGTGTCATAGCATTAAA 57.064 32.000 0.00 0.00 43.92 1.52
2360 2559 7.936496 TTTTGATGAGGTGTCATAGCATTAA 57.064 32.000 0.00 0.00 43.92 1.40
2361 2560 8.407832 CAATTTTGATGAGGTGTCATAGCATTA 58.592 33.333 0.00 0.00 43.92 1.90
2362 2561 7.262772 CAATTTTGATGAGGTGTCATAGCATT 58.737 34.615 0.00 0.00 43.92 3.56
2363 2562 6.682113 GCAATTTTGATGAGGTGTCATAGCAT 60.682 38.462 0.00 0.00 43.92 3.79
2364 2563 5.393352 GCAATTTTGATGAGGTGTCATAGCA 60.393 40.000 0.00 0.00 43.92 3.49
2365 2564 5.039333 GCAATTTTGATGAGGTGTCATAGC 58.961 41.667 0.00 0.00 43.92 2.97
2366 2565 6.446781 AGCAATTTTGATGAGGTGTCATAG 57.553 37.500 0.00 0.00 43.92 2.23
2367 2566 6.839124 AAGCAATTTTGATGAGGTGTCATA 57.161 33.333 0.00 0.00 43.92 2.15
2368 2567 5.733620 AAGCAATTTTGATGAGGTGTCAT 57.266 34.783 0.00 0.00 46.75 3.06
2369 2568 6.647334 TTAAGCAATTTTGATGAGGTGTCA 57.353 33.333 0.00 0.00 37.02 3.58
2370 2569 7.063780 CCAATTAAGCAATTTTGATGAGGTGTC 59.936 37.037 0.00 0.00 31.82 3.67
2371 2570 6.875195 CCAATTAAGCAATTTTGATGAGGTGT 59.125 34.615 0.00 0.00 31.82 4.16
2372 2571 6.875195 ACCAATTAAGCAATTTTGATGAGGTG 59.125 34.615 0.00 0.00 31.82 4.00
2373 2572 7.008021 ACCAATTAAGCAATTTTGATGAGGT 57.992 32.000 0.00 0.00 31.82 3.85
2374 2573 9.037737 CATACCAATTAAGCAATTTTGATGAGG 57.962 33.333 0.00 0.00 31.82 3.86
2375 2574 8.545420 GCATACCAATTAAGCAATTTTGATGAG 58.455 33.333 0.00 0.00 31.82 2.90
2376 2575 8.039538 TGCATACCAATTAAGCAATTTTGATGA 58.960 29.630 0.00 0.00 31.46 2.92
2377 2576 8.199176 TGCATACCAATTAAGCAATTTTGATG 57.801 30.769 0.00 0.00 31.46 3.07
2378 2577 8.832521 CATGCATACCAATTAAGCAATTTTGAT 58.167 29.630 0.00 0.00 37.90 2.57
2379 2578 8.039538 TCATGCATACCAATTAAGCAATTTTGA 58.960 29.630 0.00 0.00 37.90 2.69
2380 2579 8.199176 TCATGCATACCAATTAAGCAATTTTG 57.801 30.769 0.00 0.00 37.90 2.44
2381 2580 8.967664 ATCATGCATACCAATTAAGCAATTTT 57.032 26.923 0.00 0.00 37.90 1.82
2382 2581 9.480053 GTATCATGCATACCAATTAAGCAATTT 57.520 29.630 0.00 0.00 37.90 1.82
2383 2582 8.863086 AGTATCATGCATACCAATTAAGCAATT 58.137 29.630 0.00 0.00 37.90 2.32
2384 2583 8.413309 AGTATCATGCATACCAATTAAGCAAT 57.587 30.769 0.00 0.00 37.90 3.56
2385 2584 7.822161 AGTATCATGCATACCAATTAAGCAA 57.178 32.000 0.00 0.00 37.90 3.91
2386 2585 7.119699 GCTAGTATCATGCATACCAATTAAGCA 59.880 37.037 0.00 0.00 38.62 3.91
2387 2586 7.335422 AGCTAGTATCATGCATACCAATTAAGC 59.665 37.037 0.00 2.56 38.62 3.09
2388 2587 8.783833 AGCTAGTATCATGCATACCAATTAAG 57.216 34.615 0.00 0.00 38.62 1.85
2390 2589 9.822185 CATAGCTAGTATCATGCATACCAATTA 57.178 33.333 0.00 0.00 38.62 1.40
2391 2590 8.542926 TCATAGCTAGTATCATGCATACCAATT 58.457 33.333 0.00 0.00 38.62 2.32
2392 2591 8.082672 TCATAGCTAGTATCATGCATACCAAT 57.917 34.615 0.00 0.00 38.62 3.16
2393 2592 7.480760 TCATAGCTAGTATCATGCATACCAA 57.519 36.000 0.00 0.00 38.62 3.67
2394 2593 7.666063 ATCATAGCTAGTATCATGCATACCA 57.334 36.000 0.00 0.00 38.62 3.25
2398 2597 8.712103 ACCAATATCATAGCTAGTATCATGCAT 58.288 33.333 0.00 0.00 0.00 3.96
2399 2598 8.082672 ACCAATATCATAGCTAGTATCATGCA 57.917 34.615 0.00 0.00 0.00 3.96
2403 2602 9.936329 TCCATACCAATATCATAGCTAGTATCA 57.064 33.333 0.00 0.00 0.00 2.15
2405 2604 9.373450 CCTCCATACCAATATCATAGCTAGTAT 57.627 37.037 0.00 0.00 0.00 2.12
2406 2605 7.785028 CCCTCCATACCAATATCATAGCTAGTA 59.215 40.741 0.00 0.00 0.00 1.82
2407 2606 6.613271 CCCTCCATACCAATATCATAGCTAGT 59.387 42.308 0.00 0.00 0.00 2.57
2408 2607 6.841229 TCCCTCCATACCAATATCATAGCTAG 59.159 42.308 0.00 0.00 0.00 3.42
2409 2608 6.752091 TCCCTCCATACCAATATCATAGCTA 58.248 40.000 0.00 0.00 0.00 3.32
2410 2609 5.603750 TCCCTCCATACCAATATCATAGCT 58.396 41.667 0.00 0.00 0.00 3.32
2411 2610 5.957771 TCCCTCCATACCAATATCATAGC 57.042 43.478 0.00 0.00 0.00 2.97
2412 2611 9.218525 ACTATTCCCTCCATACCAATATCATAG 57.781 37.037 0.00 0.00 0.00 2.23
2414 2613 9.749996 ATACTATTCCCTCCATACCAATATCAT 57.250 33.333 0.00 0.00 0.00 2.45
2415 2614 8.992349 CATACTATTCCCTCCATACCAATATCA 58.008 37.037 0.00 0.00 0.00 2.15
2416 2615 7.934120 GCATACTATTCCCTCCATACCAATATC 59.066 40.741 0.00 0.00 0.00 1.63
2417 2616 7.405858 TGCATACTATTCCCTCCATACCAATAT 59.594 37.037 0.00 0.00 0.00 1.28
2418 2617 6.733334 TGCATACTATTCCCTCCATACCAATA 59.267 38.462 0.00 0.00 0.00 1.90
2419 2618 5.551583 TGCATACTATTCCCTCCATACCAAT 59.448 40.000 0.00 0.00 0.00 3.16
2420 2619 4.910913 TGCATACTATTCCCTCCATACCAA 59.089 41.667 0.00 0.00 0.00 3.67
2421 2620 4.286032 GTGCATACTATTCCCTCCATACCA 59.714 45.833 0.00 0.00 0.00 3.25
2422 2621 4.532521 AGTGCATACTATTCCCTCCATACC 59.467 45.833 0.00 0.00 34.74 2.73
2423 2622 5.482908 CAGTGCATACTATTCCCTCCATAC 58.517 45.833 0.00 0.00 34.74 2.39
2424 2623 4.020218 GCAGTGCATACTATTCCCTCCATA 60.020 45.833 11.09 0.00 34.74 2.74
2425 2624 3.244700 GCAGTGCATACTATTCCCTCCAT 60.245 47.826 11.09 0.00 34.74 3.41
2426 2625 2.104792 GCAGTGCATACTATTCCCTCCA 59.895 50.000 11.09 0.00 34.74 3.86
2427 2626 2.104792 TGCAGTGCATACTATTCCCTCC 59.895 50.000 15.37 0.00 34.74 4.30
2428 2627 3.475566 TGCAGTGCATACTATTCCCTC 57.524 47.619 15.37 0.00 34.74 4.30
2442 2641 2.034104 ACTGACATAGGCATGCAGTG 57.966 50.000 21.36 16.31 42.61 3.66
2454 2653 5.643379 AAACGCAATTATTCCACTGACAT 57.357 34.783 0.00 0.00 0.00 3.06
2455 2654 6.751514 ATAAACGCAATTATTCCACTGACA 57.248 33.333 0.00 0.00 0.00 3.58
2478 2677 6.883217 ACGTCTGTCTCCTTTTCTGTACTATA 59.117 38.462 0.00 0.00 0.00 1.31
2479 2678 5.711036 ACGTCTGTCTCCTTTTCTGTACTAT 59.289 40.000 0.00 0.00 0.00 2.12
2480 2679 5.068636 ACGTCTGTCTCCTTTTCTGTACTA 58.931 41.667 0.00 0.00 0.00 1.82
2481 2680 3.890147 ACGTCTGTCTCCTTTTCTGTACT 59.110 43.478 0.00 0.00 0.00 2.73
2482 2681 4.240175 ACGTCTGTCTCCTTTTCTGTAC 57.760 45.455 0.00 0.00 0.00 2.90
2483 2682 6.015688 ACAATACGTCTGTCTCCTTTTCTGTA 60.016 38.462 0.00 0.00 0.00 2.74
2498 2697 0.038892 ACAACGCCGACAATACGTCT 60.039 50.000 0.00 0.00 42.98 4.18
2520 2719 4.402793 GGGAAGCTGAAGTACTACAGATGA 59.597 45.833 0.00 0.00 36.38 2.92
2549 2748 5.855740 AATTAAAAAGGTCCGGAACACAA 57.144 34.783 24.28 7.96 0.00 3.33
2566 2765 4.657039 ACGGCTTCCTATCCTGGTAATTAA 59.343 41.667 0.00 0.00 0.00 1.40
2567 2766 4.228824 ACGGCTTCCTATCCTGGTAATTA 58.771 43.478 0.00 0.00 0.00 1.40
2568 2767 3.046374 ACGGCTTCCTATCCTGGTAATT 58.954 45.455 0.00 0.00 0.00 1.40
2569 2768 2.690840 ACGGCTTCCTATCCTGGTAAT 58.309 47.619 0.00 0.00 0.00 1.89
2596 2795 3.071479 TCAATGGAGAGGCGTAACAAAC 58.929 45.455 0.00 0.00 0.00 2.93
2604 2803 4.054671 GAGTAAGAATCAATGGAGAGGCG 58.945 47.826 0.00 0.00 0.00 5.52
2608 2807 7.126061 TCTAGTGGAGTAAGAATCAATGGAGA 58.874 38.462 0.00 0.00 0.00 3.71
2625 2824 3.206964 CAGACGCATCTACTCTAGTGGA 58.793 50.000 0.00 0.00 39.83 4.02
2626 2825 2.946329 ACAGACGCATCTACTCTAGTGG 59.054 50.000 0.00 0.00 32.25 4.00
2627 2826 3.790456 GCACAGACGCATCTACTCTAGTG 60.790 52.174 0.00 0.00 32.25 2.74
2628 2827 2.356382 GCACAGACGCATCTACTCTAGT 59.644 50.000 0.00 0.00 32.25 2.57
2629 2828 2.356069 TGCACAGACGCATCTACTCTAG 59.644 50.000 0.00 0.00 36.86 2.43
2630 2829 2.365582 TGCACAGACGCATCTACTCTA 58.634 47.619 0.00 0.00 36.86 2.43
2631 2830 1.177401 TGCACAGACGCATCTACTCT 58.823 50.000 0.00 0.00 36.86 3.24
2632 2831 3.721625 TGCACAGACGCATCTACTC 57.278 52.632 0.00 0.00 36.86 2.59
2678 2877 2.564771 ACAATCGGTATGATGGTGCAG 58.435 47.619 0.00 0.00 39.89 4.41
2707 2906 6.293735 CCTGCAGTGAAAAATTCCGTTAGTTA 60.294 38.462 13.81 0.00 0.00 2.24
2725 2924 1.851304 CTCTTCTCTCCTCCTGCAGT 58.149 55.000 13.81 0.00 0.00 4.40
2726 2925 0.461135 GCTCTTCTCTCCTCCTGCAG 59.539 60.000 6.78 6.78 0.00 4.41
2732 2932 0.461135 CAGGCTGCTCTTCTCTCCTC 59.539 60.000 0.00 0.00 0.00 3.71
2771 2971 1.209998 GGTAGCTCGCTTCGGATTTC 58.790 55.000 0.00 0.00 0.00 2.17
2828 3028 2.033194 GCTGTAGTGCGGGTTGTCC 61.033 63.158 0.00 0.00 0.00 4.02
2942 3156 4.059459 GACTGCACGTCGTTGCCG 62.059 66.667 14.37 11.49 42.25 5.69
3070 3296 1.768275 TGCCTTTGAGACCAGAACAGA 59.232 47.619 0.00 0.00 0.00 3.41
3071 3297 2.260844 TGCCTTTGAGACCAGAACAG 57.739 50.000 0.00 0.00 0.00 3.16
3072 3298 2.373169 AGATGCCTTTGAGACCAGAACA 59.627 45.455 0.00 0.00 0.00 3.18
3073 3299 3.064900 AGATGCCTTTGAGACCAGAAC 57.935 47.619 0.00 0.00 0.00 3.01
3074 3300 3.795688 AAGATGCCTTTGAGACCAGAA 57.204 42.857 0.00 0.00 0.00 3.02
3087 3318 4.727448 GCAACAACAACAACAAAAGATGCC 60.727 41.667 0.00 0.00 0.00 4.40
3095 3326 1.923204 GCATCGCAACAACAACAACAA 59.077 42.857 0.00 0.00 0.00 2.83
3096 3327 1.133982 AGCATCGCAACAACAACAACA 59.866 42.857 0.00 0.00 0.00 3.33
3097 3328 1.780860 GAGCATCGCAACAACAACAAC 59.219 47.619 0.00 0.00 0.00 3.32
3115 3346 2.680312 TCTCGGGATGCTTTTGAGAG 57.320 50.000 0.00 0.00 32.30 3.20
3136 3373 1.299541 CAACACACTTGAGCTTCCGT 58.700 50.000 0.00 0.00 0.00 4.69
3163 3400 1.308998 ACACCAGTGCAAGTGTAAGC 58.691 50.000 14.78 0.00 45.14 3.09
3209 3446 4.694037 ACACGAGTAAAGCCTTATTCCAAC 59.306 41.667 0.00 0.00 0.00 3.77
3272 3515 7.435068 ACACTAGTAAACAACACATGGAATC 57.565 36.000 0.00 0.00 0.00 2.52
3278 3521 7.542534 TTTCGAACACTAGTAAACAACACAT 57.457 32.000 0.00 0.00 0.00 3.21
3290 3533 3.399330 TCCCTTTGCTTTCGAACACTAG 58.601 45.455 0.00 0.00 0.00 2.57
3299 3542 6.183360 GGTGTATTAGTCATCCCTTTGCTTTC 60.183 42.308 0.00 0.00 0.00 2.62
3317 3560 9.747898 TCTTATATTTGTGAACAAGGGTGTATT 57.252 29.630 0.00 0.00 36.80 1.89
3318 3561 9.920946 ATCTTATATTTGTGAACAAGGGTGTAT 57.079 29.630 0.00 0.00 36.80 2.29
3319 3562 9.173021 CATCTTATATTTGTGAACAAGGGTGTA 57.827 33.333 0.00 0.00 36.80 2.90
3320 3563 7.669722 ACATCTTATATTTGTGAACAAGGGTGT 59.330 33.333 0.00 0.00 40.75 4.16
3321 3564 8.055279 ACATCTTATATTTGTGAACAAGGGTG 57.945 34.615 0.00 0.00 37.15 4.61
3322 3565 8.650143 AACATCTTATATTTGTGAACAAGGGT 57.350 30.769 0.00 0.00 37.15 4.34
3323 3566 8.190784 GGAACATCTTATATTTGTGAACAAGGG 58.809 37.037 0.00 0.00 37.15 3.95
3324 3567 8.739039 TGGAACATCTTATATTTGTGAACAAGG 58.261 33.333 0.00 0.00 37.15 3.61
3326 3569 9.906660 GTTGGAACATCTTATATTTGTGAACAA 57.093 29.630 0.00 0.00 39.30 2.83
3327 3570 9.072375 TGTTGGAACATCTTATATTTGTGAACA 57.928 29.630 0.00 0.00 39.30 3.18
3344 3587 8.690203 TCTAGATTCAGAAAAATGTTGGAACA 57.310 30.769 0.00 0.00 44.06 3.18
3347 3590 9.958180 TGTATCTAGATTCAGAAAAATGTTGGA 57.042 29.630 11.25 0.00 0.00 3.53
3358 3601 9.935241 GCATCCTAAAATGTATCTAGATTCAGA 57.065 33.333 11.25 5.03 0.00 3.27
3359 3602 8.867935 CGCATCCTAAAATGTATCTAGATTCAG 58.132 37.037 11.25 0.00 0.00 3.02
3360 3603 8.367911 ACGCATCCTAAAATGTATCTAGATTCA 58.632 33.333 11.25 12.62 0.00 2.57
3361 3604 8.764524 ACGCATCCTAAAATGTATCTAGATTC 57.235 34.615 11.25 6.47 0.00 2.52
3362 3605 9.561069 AAACGCATCCTAAAATGTATCTAGATT 57.439 29.630 11.25 0.00 0.00 2.40
3363 3606 8.993121 CAAACGCATCCTAAAATGTATCTAGAT 58.007 33.333 10.73 10.73 0.00 1.98
3364 3607 7.441157 CCAAACGCATCCTAAAATGTATCTAGA 59.559 37.037 0.00 0.00 0.00 2.43
3365 3608 7.226720 ACCAAACGCATCCTAAAATGTATCTAG 59.773 37.037 0.00 0.00 0.00 2.43
3366 3609 7.051623 ACCAAACGCATCCTAAAATGTATCTA 58.948 34.615 0.00 0.00 0.00 1.98
3367 3610 5.885912 ACCAAACGCATCCTAAAATGTATCT 59.114 36.000 0.00 0.00 0.00 1.98
3368 3611 6.131544 ACCAAACGCATCCTAAAATGTATC 57.868 37.500 0.00 0.00 0.00 2.24
3369 3612 6.524101 AACCAAACGCATCCTAAAATGTAT 57.476 33.333 0.00 0.00 0.00 2.29
3370 3613 5.968528 AACCAAACGCATCCTAAAATGTA 57.031 34.783 0.00 0.00 0.00 2.29
3371 3614 4.864704 AACCAAACGCATCCTAAAATGT 57.135 36.364 0.00 0.00 0.00 2.71
3372 3615 6.692681 CAGATAACCAAACGCATCCTAAAATG 59.307 38.462 0.00 0.00 0.00 2.32
3373 3616 6.680378 GCAGATAACCAAACGCATCCTAAAAT 60.680 38.462 0.00 0.00 0.00 1.82
3374 3617 5.392595 GCAGATAACCAAACGCATCCTAAAA 60.393 40.000 0.00 0.00 0.00 1.52
3403 3646 7.920682 AGGACAAGTATGCAAAGTGTTTAAAAG 59.079 33.333 0.00 0.00 0.00 2.27
3409 3652 7.370383 CAATTAGGACAAGTATGCAAAGTGTT 58.630 34.615 0.00 0.00 0.00 3.32
3410 3653 6.071952 CCAATTAGGACAAGTATGCAAAGTGT 60.072 38.462 0.00 0.00 41.22 3.55
3486 3729 3.056678 CAGGCTAGAGAGGATACATGCAG 60.057 52.174 0.00 0.00 41.41 4.41
3568 3812 4.141287 TGGATGTAACCAAACAACTGGAG 58.859 43.478 0.00 0.00 38.96 3.86
3612 3856 8.561536 TCTAATAACCTCACCATATCAAGGAA 57.438 34.615 0.00 0.00 32.99 3.36
3621 3865 3.780294 TGTGCCTCTAATAACCTCACCAT 59.220 43.478 0.00 0.00 0.00 3.55
3672 3924 5.883673 AGACTTGTGTTTGTGCCTAAGTTTA 59.116 36.000 0.00 0.00 0.00 2.01
3705 3958 7.593825 ACTATGTTGGCTTAAAACTTGTGATC 58.406 34.615 0.00 0.00 0.00 2.92
3741 3995 6.183360 TGGTTTAAGACTTGGGTTTCGTTTAC 60.183 38.462 0.00 0.00 0.00 2.01
3802 4062 2.495939 CATAACAACGCTTTCGCTGTC 58.504 47.619 0.00 0.00 43.31 3.51
3805 4065 1.156736 AGCATAACAACGCTTTCGCT 58.843 45.000 0.00 0.00 39.84 4.93
3811 4072 2.619013 GCAAGAAGCATAACAACGCT 57.381 45.000 0.00 0.00 44.79 5.07
3825 4086 2.064434 TGTGGTCACCAAATGCAAGA 57.936 45.000 0.00 0.00 34.18 3.02
3832 4093 1.169661 GCGTGGATGTGGTCACCAAA 61.170 55.000 0.00 0.00 34.18 3.28
3873 4134 1.191489 TGACCCCGACAGCATGAAGA 61.191 55.000 0.00 0.00 39.69 2.87
3881 4142 3.245668 AAGCAGCTGACCCCGACAG 62.246 63.158 20.43 0.00 38.27 3.51
3895 4157 2.749076 GGTACATGCTGACATTCAAGCA 59.251 45.455 0.00 0.00 35.91 3.91
3903 4165 3.386402 TCATTATCGGGTACATGCTGACA 59.614 43.478 0.00 0.00 0.00 3.58
3921 4183 1.523758 GCTTCGTTCACCAGGTCATT 58.476 50.000 0.00 0.00 0.00 2.57
3926 4188 1.291877 CTTCCGCTTCGTTCACCAGG 61.292 60.000 0.00 0.00 0.00 4.45
3937 4199 4.660938 GTGGGCCACCTTCCGCTT 62.661 66.667 26.51 0.00 37.76 4.68
3954 4216 0.475906 GGGTCATCCTTGATCAGGGG 59.524 60.000 22.65 15.68 44.12 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.