Multiple sequence alignment - TraesCS4A01G104000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G104000 chr4A 100.000 5359 0 0 1 5359 117665910 117671268 0.000000e+00 9897.0
1 TraesCS4A01G104000 chr4A 89.840 374 36 2 1615 1987 154387087 154387459 3.750000e-131 479.0
2 TraesCS4A01G104000 chr4B 93.173 3413 186 26 1975 5359 428213211 428209818 0.000000e+00 4968.0
3 TraesCS4A01G104000 chr4B 92.371 1337 63 18 245 1566 428214512 428213200 0.000000e+00 1868.0
4 TraesCS4A01G104000 chr4D 92.983 3349 185 22 2032 5359 348056354 348053035 0.000000e+00 4837.0
5 TraesCS4A01G104000 chr4D 93.013 1188 54 13 386 1566 348057597 348056432 0.000000e+00 1707.0
6 TraesCS4A01G104000 chr4D 93.467 398 25 1 1 397 348058409 348058012 1.660000e-164 590.0
7 TraesCS4A01G104000 chr4D 96.078 51 2 0 1975 2025 348056443 348056393 3.440000e-12 84.2
8 TraesCS4A01G104000 chr1A 89.151 424 35 6 1567 1979 432224517 432224094 7.960000e-143 518.0
9 TraesCS4A01G104000 chr5A 91.436 362 30 1 1616 1977 475524391 475524031 3.730000e-136 496.0
10 TraesCS4A01G104000 chr5A 91.011 356 29 3 1623 1977 347326614 347326967 1.350000e-130 477.0
11 TraesCS4A01G104000 chr5A 100.000 31 0 0 145 175 650521123 650521093 2.080000e-04 58.4
12 TraesCS4A01G104000 chr2A 90.959 365 31 2 1615 1977 70928481 70928845 1.730000e-134 490.0
13 TraesCS4A01G104000 chr2A 90.449 356 32 2 1623 1977 147547567 147547921 8.130000e-128 468.0
14 TraesCS4A01G104000 chr6A 86.712 444 43 11 1559 1988 91890888 91890447 3.750000e-131 479.0
15 TraesCS4A01G104000 chr5B 91.011 356 29 3 1623 1977 474746466 474746113 1.350000e-130 477.0
16 TraesCS4A01G104000 chr7A 87.089 426 42 5 1564 1977 80541380 80541804 2.260000e-128 470.0
17 TraesCS4A01G104000 chr3A 86.911 382 45 5 3566 3945 737893868 737894246 1.780000e-114 424.0
18 TraesCS4A01G104000 chr3A 85.496 131 19 0 4294 4424 737894609 737894739 2.600000e-28 137.0
19 TraesCS4A01G104000 chr3B 86.538 364 44 5 3566 3927 815853866 815854226 3.890000e-106 396.0
20 TraesCS4A01G104000 chr3B 85.470 117 17 0 4294 4410 815854606 815854722 7.290000e-24 122.0
21 TraesCS4A01G104000 chr7B 85.106 188 28 0 2628 2815 19683830 19683643 5.480000e-45 193.0
22 TraesCS4A01G104000 chr7D 84.574 188 29 0 2628 2815 75052378 75052191 2.550000e-43 187.0
23 TraesCS4A01G104000 chr3D 85.470 117 17 0 4294 4410 606317042 606316926 7.290000e-24 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G104000 chr4A 117665910 117671268 5358 False 9897.00 9897 100.00000 1 5359 1 chr4A.!!$F1 5358
1 TraesCS4A01G104000 chr4B 428209818 428214512 4694 True 3418.00 4968 92.77200 245 5359 2 chr4B.!!$R1 5114
2 TraesCS4A01G104000 chr4D 348053035 348058409 5374 True 1804.55 4837 93.88525 1 5359 4 chr4D.!!$R1 5358
3 TraesCS4A01G104000 chr3A 737893868 737894739 871 False 280.50 424 86.20350 3566 4424 2 chr3A.!!$F1 858
4 TraesCS4A01G104000 chr3B 815853866 815854722 856 False 259.00 396 86.00400 3566 4410 2 chr3B.!!$F1 844

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
40 41 0.541392 ATACGTCATTGGCTGCCTGA 59.459 50.0 21.03 13.36 0.00 3.86 F
1256 1701 0.036875 AAGCTAGCTGTTGTGACCCC 59.963 55.0 20.16 0.00 0.00 4.95 F
1578 2024 0.036306 ATCGGGAGGCAAAGTTTCGT 59.964 50.0 0.00 0.00 0.00 3.85 F
1705 2151 0.037160 GGGACTTTGGCGGTAGGAAA 59.963 55.0 0.00 0.00 0.00 3.13 F
1818 2264 0.179067 TAGGCGGGTTTTGGCGATAG 60.179 55.0 0.00 0.00 36.92 2.08 F
2416 2905 0.243095 AACCGCCGACACTCTTCTAC 59.757 55.0 0.00 0.00 0.00 2.59 F
4174 4722 0.176449 CCGATCCTGCATCTGACACA 59.824 55.0 0.00 0.00 0.00 3.72 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1446 1891 0.036952 CTTGCAGACGGTCATCCACT 60.037 55.000 11.27 0.00 0.00 4.00 R
2522 3011 0.249398 TAACCGAGGGCTTGAAGCTC 59.751 55.000 17.59 13.88 43.65 4.09 R
2771 3261 1.066645 ACATCGCTGCTGATGACTTCA 60.067 47.619 28.13 0.00 46.98 3.02 R
3694 4198 0.995132 ACCCCCATCATGAGCATGGA 60.995 55.000 14.30 0.00 43.32 3.41 R
3803 4307 2.254546 AGTGTCATCGGCAGTTTGAA 57.745 45.000 0.00 0.00 0.00 2.69 R
4345 4900 1.092348 GGAATGCTACCCAAACGGAC 58.908 55.000 0.00 0.00 34.64 4.79 R
5089 5652 1.330213 GCTAGGTCGAGTTCCTACGTC 59.670 57.143 0.00 0.00 36.60 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 0.541392 ATACGTCATTGGCTGCCTGA 59.459 50.000 21.03 13.36 0.00 3.86
78 79 1.600916 GGCAAAAGGAGTCAGGCGT 60.601 57.895 0.00 0.00 0.00 5.68
111 112 3.855154 GCGAGAGTCGACATGATAAGCAT 60.855 47.826 19.50 0.00 43.74 3.79
132 133 3.309296 TCCCCTGATCTAGAACACCATC 58.691 50.000 0.00 0.00 0.00 3.51
156 157 4.654724 ACTAGGTAGAAGTTTAGGGGATGC 59.345 45.833 0.00 0.00 0.00 3.91
158 159 2.484947 GGTAGAAGTTTAGGGGATGCGG 60.485 54.545 0.00 0.00 0.00 5.69
184 185 5.425217 TGGATGTCCAGCTTCTAAATCACTA 59.575 40.000 0.00 0.00 42.01 2.74
187 188 6.544928 TGTCCAGCTTCTAAATCACTATCA 57.455 37.500 0.00 0.00 0.00 2.15
215 216 2.811431 TGATTTTTGTCTGTCCGCGAAT 59.189 40.909 8.23 0.00 0.00 3.34
216 217 3.997681 TGATTTTTGTCTGTCCGCGAATA 59.002 39.130 8.23 0.00 0.00 1.75
228 229 4.758165 TGTCCGCGAATAGATACTGATACA 59.242 41.667 8.23 0.00 0.00 2.29
351 352 4.268884 GCAGAAGATAAGCGTGGAACTAAG 59.731 45.833 0.00 0.00 31.75 2.18
409 837 4.960938 TCAGGATAATCCCTCGTTCATTG 58.039 43.478 0.00 0.00 37.19 2.82
416 844 2.151202 TCCCTCGTTCATTGTTGCTTC 58.849 47.619 0.00 0.00 0.00 3.86
443 871 4.175787 AGAAGTGTCGTATCAGTTGGAC 57.824 45.455 0.00 0.00 32.07 4.02
482 910 3.680786 GGCAAAACCCTCGGTGGC 61.681 66.667 0.00 0.00 35.34 5.01
499 927 4.047059 CGTGTGGGGCGTAGTCGT 62.047 66.667 0.00 0.00 39.49 4.34
506 934 1.503542 GGGCGTAGTCGTTTCTCGA 59.496 57.895 0.00 0.00 46.83 4.04
573 1001 2.105984 TGCGTTTCTGCAAAGCTGT 58.894 47.368 0.00 0.00 43.02 4.40
593 1021 4.013728 TGTTATACATCCCAGCAAACCAC 58.986 43.478 0.00 0.00 0.00 4.16
651 1080 7.223387 GCTTTGTCTATAAAATTGCCCATTCTG 59.777 37.037 0.00 0.00 0.00 3.02
721 1152 5.507985 GGGTCCAAGCTGCATTAATAATGAC 60.508 44.000 16.45 8.43 41.46 3.06
722 1153 5.300286 GGTCCAAGCTGCATTAATAATGACT 59.700 40.000 16.45 7.34 41.46 3.41
723 1154 6.486657 GGTCCAAGCTGCATTAATAATGACTA 59.513 38.462 16.45 1.85 41.46 2.59
724 1155 7.013274 GGTCCAAGCTGCATTAATAATGACTAA 59.987 37.037 16.45 0.00 41.46 2.24
725 1156 8.571336 GTCCAAGCTGCATTAATAATGACTAAT 58.429 33.333 16.45 0.00 41.46 1.73
726 1157 8.570488 TCCAAGCTGCATTAATAATGACTAATG 58.430 33.333 16.45 8.72 41.46 1.90
727 1158 8.570488 CCAAGCTGCATTAATAATGACTAATGA 58.430 33.333 16.45 0.00 41.46 2.57
769 1200 3.513680 ACGAAAGGACCCAAAACAAAC 57.486 42.857 0.00 0.00 0.00 2.93
772 1203 3.862845 CGAAAGGACCCAAAACAAACAAG 59.137 43.478 0.00 0.00 0.00 3.16
817 1248 1.594293 GTGTATCCCATGGTCGGCG 60.594 63.158 11.73 0.00 0.00 6.46
971 1410 5.116084 TCAAACTCTGGGATTATTGGAGG 57.884 43.478 0.00 0.00 0.00 4.30
1186 1629 0.515564 CGTCTGGCCGGTAAGTTTTG 59.484 55.000 12.43 0.00 0.00 2.44
1256 1701 0.036875 AAGCTAGCTGTTGTGACCCC 59.963 55.000 20.16 0.00 0.00 4.95
1312 1757 0.112218 AGTAACTGGGTTGCATGCCA 59.888 50.000 16.68 0.00 30.81 4.92
1387 1832 3.138625 TCGATTCCGATGAGGCCC 58.861 61.111 0.00 0.00 40.30 5.80
1399 1844 1.267574 TGAGGCCCAGTCATGACCTC 61.268 60.000 22.21 19.87 44.09 3.85
1441 1886 0.179134 CTGTTTCCGGCGTAGGAGAG 60.179 60.000 6.01 0.00 41.98 3.20
1442 1887 1.141234 GTTTCCGGCGTAGGAGAGG 59.859 63.158 6.01 0.00 41.98 3.69
1443 1888 1.000521 TTTCCGGCGTAGGAGAGGA 60.001 57.895 6.01 0.00 41.98 3.71
1444 1889 0.396695 TTTCCGGCGTAGGAGAGGAT 60.397 55.000 6.01 0.00 41.98 3.24
1445 1890 1.107538 TTCCGGCGTAGGAGAGGATG 61.108 60.000 6.01 0.00 41.98 3.51
1446 1891 1.528542 CCGGCGTAGGAGAGGATGA 60.529 63.158 6.01 0.00 0.00 2.92
1447 1892 1.519751 CCGGCGTAGGAGAGGATGAG 61.520 65.000 6.01 0.00 0.00 2.90
1448 1893 0.820074 CGGCGTAGGAGAGGATGAGT 60.820 60.000 0.00 0.00 0.00 3.41
1456 1901 1.691434 GGAGAGGATGAGTGGATGACC 59.309 57.143 0.00 0.00 0.00 4.02
1467 1912 1.296715 GGATGACCGTCTGCAAGGT 59.703 57.895 7.77 7.77 44.64 3.50
1509 1955 0.536006 GGCCGCTGCTTGGATTAGAT 60.536 55.000 0.00 0.00 37.74 1.98
1563 2009 2.503061 CTGGTGAGGCCTCATCGG 59.497 66.667 34.96 34.96 43.44 4.18
1564 2010 3.083349 TGGTGAGGCCTCATCGGG 61.083 66.667 37.07 0.00 43.44 5.14
1565 2011 2.764128 GGTGAGGCCTCATCGGGA 60.764 66.667 37.07 11.75 42.18 5.14
1566 2012 2.801631 GGTGAGGCCTCATCGGGAG 61.802 68.421 37.07 0.00 42.18 4.30
1574 2020 3.558674 CTCATCGGGAGGCAAAGTT 57.441 52.632 0.00 0.00 40.13 2.66
1575 2021 1.826385 CTCATCGGGAGGCAAAGTTT 58.174 50.000 0.00 0.00 40.13 2.66
1576 2022 1.740025 CTCATCGGGAGGCAAAGTTTC 59.260 52.381 0.00 0.00 40.13 2.78
1577 2023 0.447801 CATCGGGAGGCAAAGTTTCG 59.552 55.000 0.00 0.00 0.00 3.46
1578 2024 0.036306 ATCGGGAGGCAAAGTTTCGT 59.964 50.000 0.00 0.00 0.00 3.85
1579 2025 0.882927 TCGGGAGGCAAAGTTTCGTG 60.883 55.000 0.00 0.00 0.00 4.35
1580 2026 0.882927 CGGGAGGCAAAGTTTCGTGA 60.883 55.000 0.00 0.00 0.00 4.35
1581 2027 1.534729 GGGAGGCAAAGTTTCGTGAT 58.465 50.000 0.00 0.00 0.00 3.06
1582 2028 1.886542 GGGAGGCAAAGTTTCGTGATT 59.113 47.619 0.00 0.00 0.00 2.57
1583 2029 2.296190 GGGAGGCAAAGTTTCGTGATTT 59.704 45.455 0.00 0.00 0.00 2.17
1584 2030 3.308530 GGAGGCAAAGTTTCGTGATTTG 58.691 45.455 0.00 0.00 37.07 2.32
1585 2031 3.004315 GGAGGCAAAGTTTCGTGATTTGA 59.996 43.478 1.32 0.00 36.28 2.69
1586 2032 3.964909 AGGCAAAGTTTCGTGATTTGAC 58.035 40.909 1.32 0.00 41.35 3.18
1587 2033 3.049912 GGCAAAGTTTCGTGATTTGACC 58.950 45.455 1.32 0.00 36.20 4.02
1588 2034 3.049912 GCAAAGTTTCGTGATTTGACCC 58.950 45.455 1.32 0.00 36.28 4.46
1589 2035 3.243401 GCAAAGTTTCGTGATTTGACCCT 60.243 43.478 1.32 0.00 36.28 4.34
1590 2036 4.736464 GCAAAGTTTCGTGATTTGACCCTT 60.736 41.667 1.32 0.00 36.28 3.95
1591 2037 5.348164 CAAAGTTTCGTGATTTGACCCTTT 58.652 37.500 0.00 0.00 36.28 3.11
1592 2038 5.592104 AAGTTTCGTGATTTGACCCTTTT 57.408 34.783 0.00 0.00 0.00 2.27
1593 2039 5.592104 AGTTTCGTGATTTGACCCTTTTT 57.408 34.783 0.00 0.00 0.00 1.94
1594 2040 5.588240 AGTTTCGTGATTTGACCCTTTTTC 58.412 37.500 0.00 0.00 0.00 2.29
1595 2041 5.126384 AGTTTCGTGATTTGACCCTTTTTCA 59.874 36.000 0.00 0.00 0.00 2.69
1596 2042 5.584253 TTCGTGATTTGACCCTTTTTCAA 57.416 34.783 0.00 0.00 0.00 2.69
1597 2043 5.584253 TCGTGATTTGACCCTTTTTCAAA 57.416 34.783 0.31 0.31 44.84 2.69
1598 2044 5.967088 TCGTGATTTGACCCTTTTTCAAAA 58.033 33.333 1.90 0.00 44.14 2.44
1599 2045 6.039616 TCGTGATTTGACCCTTTTTCAAAAG 58.960 36.000 5.21 5.21 44.14 2.27
1600 2046 5.276820 CGTGATTTGACCCTTTTTCAAAAGC 60.277 40.000 6.52 0.00 44.14 3.51
1601 2047 5.817296 GTGATTTGACCCTTTTTCAAAAGCT 59.183 36.000 6.52 0.00 44.14 3.74
1602 2048 6.983890 GTGATTTGACCCTTTTTCAAAAGCTA 59.016 34.615 6.52 0.00 44.14 3.32
1603 2049 7.657354 GTGATTTGACCCTTTTTCAAAAGCTAT 59.343 33.333 6.52 0.00 44.14 2.97
1604 2050 8.210265 TGATTTGACCCTTTTTCAAAAGCTATT 58.790 29.630 6.52 0.00 44.14 1.73
1605 2051 8.607441 ATTTGACCCTTTTTCAAAAGCTATTC 57.393 30.769 6.52 1.65 44.14 1.75
1606 2052 5.768317 TGACCCTTTTTCAAAAGCTATTCG 58.232 37.500 6.52 0.00 43.07 3.34
1607 2053 5.533154 TGACCCTTTTTCAAAAGCTATTCGA 59.467 36.000 6.52 0.00 43.07 3.71
1608 2054 6.039941 TGACCCTTTTTCAAAAGCTATTCGAA 59.960 34.615 0.00 0.00 43.07 3.71
1609 2055 6.811954 ACCCTTTTTCAAAAGCTATTCGAAA 58.188 32.000 0.00 0.00 43.07 3.46
1610 2056 7.441836 ACCCTTTTTCAAAAGCTATTCGAAAT 58.558 30.769 0.00 0.00 43.07 2.17
1611 2057 7.598869 ACCCTTTTTCAAAAGCTATTCGAAATC 59.401 33.333 0.00 0.00 43.07 2.17
1612 2058 7.814587 CCCTTTTTCAAAAGCTATTCGAAATCT 59.185 33.333 0.00 0.00 43.07 2.40
1613 2059 8.642020 CCTTTTTCAAAAGCTATTCGAAATCTG 58.358 33.333 0.00 0.00 43.07 2.90
1614 2060 8.519492 TTTTTCAAAAGCTATTCGAAATCTGG 57.481 30.769 0.00 0.00 0.00 3.86
1615 2061 7.447374 TTTCAAAAGCTATTCGAAATCTGGA 57.553 32.000 0.00 0.00 0.00 3.86
1616 2062 7.447374 TTCAAAAGCTATTCGAAATCTGGAA 57.553 32.000 0.00 3.06 0.00 3.53
1617 2063 7.447374 TCAAAAGCTATTCGAAATCTGGAAA 57.553 32.000 0.00 0.00 0.00 3.13
1618 2064 7.881142 TCAAAAGCTATTCGAAATCTGGAAAA 58.119 30.769 0.00 0.00 0.00 2.29
1619 2065 8.356657 TCAAAAGCTATTCGAAATCTGGAAAAA 58.643 29.630 0.00 0.00 0.00 1.94
1641 2087 5.793026 AAATCGAGATCTGACTCTTTTGC 57.207 39.130 0.00 0.00 35.06 3.68
1642 2088 4.734398 ATCGAGATCTGACTCTTTTGCT 57.266 40.909 0.00 0.00 35.06 3.91
1643 2089 5.843673 ATCGAGATCTGACTCTTTTGCTA 57.156 39.130 0.00 0.00 35.06 3.49
1644 2090 4.987832 TCGAGATCTGACTCTTTTGCTAC 58.012 43.478 0.00 0.00 35.06 3.58
1645 2091 4.109050 CGAGATCTGACTCTTTTGCTACC 58.891 47.826 0.00 0.00 35.06 3.18
1646 2092 4.109050 GAGATCTGACTCTTTTGCTACCG 58.891 47.826 0.00 0.00 34.47 4.02
1647 2093 2.080286 TCTGACTCTTTTGCTACCGC 57.920 50.000 0.00 0.00 0.00 5.68
1648 2094 1.079503 CTGACTCTTTTGCTACCGCC 58.920 55.000 0.00 0.00 34.43 6.13
1649 2095 0.394938 TGACTCTTTTGCTACCGCCA 59.605 50.000 0.00 0.00 34.43 5.69
1650 2096 1.079503 GACTCTTTTGCTACCGCCAG 58.920 55.000 0.00 0.00 34.43 4.85
1651 2097 0.685097 ACTCTTTTGCTACCGCCAGA 59.315 50.000 0.00 0.00 34.43 3.86
1652 2098 1.338200 ACTCTTTTGCTACCGCCAGAG 60.338 52.381 0.00 0.00 38.66 3.35
1653 2099 0.685097 TCTTTTGCTACCGCCAGAGT 59.315 50.000 0.00 0.00 34.43 3.24
1654 2100 1.079503 CTTTTGCTACCGCCAGAGTC 58.920 55.000 0.00 0.00 34.43 3.36
1655 2101 0.321298 TTTTGCTACCGCCAGAGTCC 60.321 55.000 0.00 0.00 34.43 3.85
1656 2102 1.476845 TTTGCTACCGCCAGAGTCCA 61.477 55.000 0.00 0.00 34.43 4.02
1657 2103 1.264749 TTGCTACCGCCAGAGTCCAT 61.265 55.000 0.00 0.00 34.43 3.41
1658 2104 1.227380 GCTACCGCCAGAGTCCATG 60.227 63.158 0.00 0.00 0.00 3.66
1659 2105 1.443407 CTACCGCCAGAGTCCATGG 59.557 63.158 4.97 4.97 41.04 3.66
1666 2112 0.467384 CCAGAGTCCATGGCAGTAGG 59.533 60.000 6.96 2.22 0.00 3.18
1667 2113 0.467384 CAGAGTCCATGGCAGTAGGG 59.533 60.000 6.96 0.00 0.00 3.53
1668 2114 0.043334 AGAGTCCATGGCAGTAGGGT 59.957 55.000 6.96 0.00 0.00 4.34
1669 2115 0.466124 GAGTCCATGGCAGTAGGGTC 59.534 60.000 6.96 0.00 0.00 4.46
1670 2116 0.043334 AGTCCATGGCAGTAGGGTCT 59.957 55.000 6.96 0.00 0.00 3.85
1671 2117 1.291033 AGTCCATGGCAGTAGGGTCTA 59.709 52.381 6.96 0.00 0.00 2.59
1672 2118 2.116238 GTCCATGGCAGTAGGGTCTAA 58.884 52.381 6.96 0.00 0.00 2.10
1673 2119 2.116238 TCCATGGCAGTAGGGTCTAAC 58.884 52.381 6.96 0.00 0.00 2.34
1674 2120 1.837439 CCATGGCAGTAGGGTCTAACA 59.163 52.381 0.00 0.00 0.00 2.41
1675 2121 2.158900 CCATGGCAGTAGGGTCTAACAG 60.159 54.545 0.00 0.00 0.00 3.16
1676 2122 0.902531 TGGCAGTAGGGTCTAACAGC 59.097 55.000 0.00 0.00 0.00 4.40
1677 2123 0.178301 GGCAGTAGGGTCTAACAGCC 59.822 60.000 0.00 0.00 43.93 4.85
1683 2129 1.143401 GGGTCTAACAGCCTACCGC 59.857 63.158 0.00 0.00 39.90 5.68
1684 2130 1.143401 GGTCTAACAGCCTACCGCC 59.857 63.158 0.00 0.00 38.78 6.13
1685 2131 1.610554 GGTCTAACAGCCTACCGCCA 61.611 60.000 0.00 0.00 38.78 5.69
1686 2132 0.179108 GTCTAACAGCCTACCGCCAG 60.179 60.000 0.00 0.00 38.78 4.85
1687 2133 1.144057 CTAACAGCCTACCGCCAGG 59.856 63.158 0.00 0.00 45.13 4.45
1688 2134 2.311688 CTAACAGCCTACCGCCAGGG 62.312 65.000 3.06 0.00 43.47 4.45
1689 2135 2.808761 TAACAGCCTACCGCCAGGGA 62.809 60.000 3.06 0.00 43.47 4.20
1690 2136 4.162690 CAGCCTACCGCCAGGGAC 62.163 72.222 3.06 0.00 43.47 4.46
1691 2137 4.400251 AGCCTACCGCCAGGGACT 62.400 66.667 3.06 0.00 43.47 3.85
1692 2138 3.400054 GCCTACCGCCAGGGACTT 61.400 66.667 3.06 0.00 43.47 3.01
1693 2139 2.967946 GCCTACCGCCAGGGACTTT 61.968 63.158 3.06 0.00 43.47 2.66
1694 2140 1.078426 CCTACCGCCAGGGACTTTG 60.078 63.158 0.00 0.00 43.47 2.77
1695 2141 1.078426 CTACCGCCAGGGACTTTGG 60.078 63.158 0.00 0.00 43.47 3.28
1700 2146 3.074281 CCAGGGACTTTGGCGGTA 58.926 61.111 0.00 0.00 34.60 4.02
1701 2147 1.078426 CCAGGGACTTTGGCGGTAG 60.078 63.158 0.00 0.00 34.60 3.18
1702 2148 1.078426 CAGGGACTTTGGCGGTAGG 60.078 63.158 0.00 0.00 34.60 3.18
1703 2149 1.229400 AGGGACTTTGGCGGTAGGA 60.229 57.895 0.00 0.00 27.25 2.94
1704 2150 0.838987 AGGGACTTTGGCGGTAGGAA 60.839 55.000 0.00 0.00 27.25 3.36
1705 2151 0.037160 GGGACTTTGGCGGTAGGAAA 59.963 55.000 0.00 0.00 0.00 3.13
1706 2152 1.162698 GGACTTTGGCGGTAGGAAAC 58.837 55.000 0.00 0.00 0.00 2.78
1707 2153 1.543871 GGACTTTGGCGGTAGGAAACA 60.544 52.381 0.00 0.00 0.00 2.83
1708 2154 2.433436 GACTTTGGCGGTAGGAAACAT 58.567 47.619 0.00 0.00 0.00 2.71
1709 2155 2.418976 GACTTTGGCGGTAGGAAACATC 59.581 50.000 0.00 0.00 0.00 3.06
1710 2156 2.039879 ACTTTGGCGGTAGGAAACATCT 59.960 45.455 0.00 0.00 0.00 2.90
1711 2157 2.396590 TTGGCGGTAGGAAACATCTC 57.603 50.000 0.00 0.00 0.00 2.75
1712 2158 1.568504 TGGCGGTAGGAAACATCTCT 58.431 50.000 0.00 0.00 0.00 3.10
1713 2159 2.742348 TGGCGGTAGGAAACATCTCTA 58.258 47.619 0.00 0.00 0.00 2.43
1714 2160 2.429610 TGGCGGTAGGAAACATCTCTAC 59.570 50.000 0.00 0.00 34.31 2.59
1715 2161 2.223994 GGCGGTAGGAAACATCTCTACC 60.224 54.545 8.30 8.30 45.71 3.18
1717 2163 3.095102 GGTAGGAAACATCTCTACCGC 57.905 52.381 0.00 0.00 42.16 5.68
1718 2164 2.223994 GGTAGGAAACATCTCTACCGCC 60.224 54.545 0.00 0.00 42.16 6.13
1719 2165 1.568504 AGGAAACATCTCTACCGCCA 58.431 50.000 0.00 0.00 0.00 5.69
1720 2166 1.906574 AGGAAACATCTCTACCGCCAA 59.093 47.619 0.00 0.00 0.00 4.52
1721 2167 2.304761 AGGAAACATCTCTACCGCCAAA 59.695 45.455 0.00 0.00 0.00 3.28
1722 2168 2.418976 GGAAACATCTCTACCGCCAAAC 59.581 50.000 0.00 0.00 0.00 2.93
1723 2169 3.335579 GAAACATCTCTACCGCCAAACT 58.664 45.455 0.00 0.00 0.00 2.66
1724 2170 2.386661 ACATCTCTACCGCCAAACTG 57.613 50.000 0.00 0.00 0.00 3.16
1725 2171 1.066143 ACATCTCTACCGCCAAACTGG 60.066 52.381 0.00 0.00 41.55 4.00
1734 2180 2.033448 CCAAACTGGCTGGCGGTA 59.967 61.111 16.61 0.00 0.00 4.02
1735 2181 2.040544 CCAAACTGGCTGGCGGTAG 61.041 63.158 16.61 11.69 0.00 3.18
1736 2182 2.359975 AAACTGGCTGGCGGTAGC 60.360 61.111 16.61 0.00 42.94 3.58
1746 2192 3.732470 GCGGTAGCCTGCATAACC 58.268 61.111 0.00 0.00 37.42 2.85
1747 2193 1.892391 GCGGTAGCCTGCATAACCC 60.892 63.158 0.00 0.00 37.42 4.11
1748 2194 1.830145 CGGTAGCCTGCATAACCCT 59.170 57.895 0.00 0.00 0.00 4.34
1749 2195 1.045407 CGGTAGCCTGCATAACCCTA 58.955 55.000 0.00 0.00 0.00 3.53
1750 2196 1.270147 CGGTAGCCTGCATAACCCTAC 60.270 57.143 0.00 0.00 0.00 3.18
1751 2197 1.071857 GGTAGCCTGCATAACCCTACC 59.928 57.143 10.59 10.59 40.66 3.18
1752 2198 1.045407 TAGCCTGCATAACCCTACCG 58.955 55.000 0.00 0.00 0.00 4.02
1753 2199 0.981277 AGCCTGCATAACCCTACCGT 60.981 55.000 0.00 0.00 0.00 4.83
1754 2200 0.532196 GCCTGCATAACCCTACCGTC 60.532 60.000 0.00 0.00 0.00 4.79
1755 2201 0.828022 CCTGCATAACCCTACCGTCA 59.172 55.000 0.00 0.00 0.00 4.35
1756 2202 1.208535 CCTGCATAACCCTACCGTCAA 59.791 52.381 0.00 0.00 0.00 3.18
1757 2203 2.550978 CTGCATAACCCTACCGTCAAG 58.449 52.381 0.00 0.00 0.00 3.02
1769 2215 2.203294 GTCAAGGTGGTTGGCGGT 60.203 61.111 0.00 0.00 36.71 5.68
1770 2216 1.071814 GTCAAGGTGGTTGGCGGTA 59.928 57.895 0.00 0.00 36.71 4.02
1771 2217 0.953960 GTCAAGGTGGTTGGCGGTAG 60.954 60.000 0.00 0.00 36.71 3.18
1772 2218 1.674322 CAAGGTGGTTGGCGGTAGG 60.674 63.158 0.00 0.00 31.82 3.18
1773 2219 3.562732 AAGGTGGTTGGCGGTAGGC 62.563 63.158 0.00 0.00 44.11 3.93
1784 2230 4.735132 GGTAGGCACGAGCACGCA 62.735 66.667 7.26 0.00 44.61 5.24
1785 2231 3.479269 GTAGGCACGAGCACGCAC 61.479 66.667 7.26 0.00 44.61 5.34
1786 2232 3.680786 TAGGCACGAGCACGCACT 61.681 61.111 7.26 1.98 44.61 4.40
1787 2233 3.914605 TAGGCACGAGCACGCACTG 62.915 63.158 7.26 0.00 44.61 3.66
1802 2248 5.854157 CACGCACTGTGTTTAATACTTAGG 58.146 41.667 9.86 0.00 43.88 2.69
1803 2249 4.390909 ACGCACTGTGTTTAATACTTAGGC 59.609 41.667 9.86 0.00 0.00 3.93
1804 2250 4.491924 CGCACTGTGTTTAATACTTAGGCG 60.492 45.833 9.86 0.00 31.61 5.52
1805 2251 4.201783 GCACTGTGTTTAATACTTAGGCGG 60.202 45.833 9.86 0.00 0.00 6.13
1806 2252 4.331717 CACTGTGTTTAATACTTAGGCGGG 59.668 45.833 0.00 0.00 0.00 6.13
1807 2253 4.019950 ACTGTGTTTAATACTTAGGCGGGT 60.020 41.667 0.00 0.00 0.00 5.28
1808 2254 4.909001 TGTGTTTAATACTTAGGCGGGTT 58.091 39.130 0.00 0.00 0.00 4.11
1809 2255 5.315348 TGTGTTTAATACTTAGGCGGGTTT 58.685 37.500 0.00 0.00 0.00 3.27
1810 2256 5.769162 TGTGTTTAATACTTAGGCGGGTTTT 59.231 36.000 0.00 0.00 0.00 2.43
1811 2257 6.088173 GTGTTTAATACTTAGGCGGGTTTTG 58.912 40.000 0.00 0.00 0.00 2.44
1812 2258 5.183522 TGTTTAATACTTAGGCGGGTTTTGG 59.816 40.000 0.00 0.00 0.00 3.28
1813 2259 1.758936 ATACTTAGGCGGGTTTTGGC 58.241 50.000 0.00 0.00 0.00 4.52
1814 2260 0.674269 TACTTAGGCGGGTTTTGGCG 60.674 55.000 0.00 0.00 36.92 5.69
1815 2261 1.673009 CTTAGGCGGGTTTTGGCGA 60.673 57.895 0.00 0.00 36.92 5.54
1816 2262 1.001887 TTAGGCGGGTTTTGGCGAT 60.002 52.632 0.00 0.00 36.92 4.58
1817 2263 0.252479 TTAGGCGGGTTTTGGCGATA 59.748 50.000 0.00 0.00 36.92 2.92
1818 2264 0.179067 TAGGCGGGTTTTGGCGATAG 60.179 55.000 0.00 0.00 36.92 2.08
1819 2265 2.478033 GGCGGGTTTTGGCGATAGG 61.478 63.158 0.00 0.00 0.00 2.57
1820 2266 2.478033 GCGGGTTTTGGCGATAGGG 61.478 63.158 0.00 0.00 0.00 3.53
1821 2267 2.478033 CGGGTTTTGGCGATAGGGC 61.478 63.158 0.00 0.00 42.69 5.19
1828 2274 3.034030 GGCGATAGGGCATGCAAC 58.966 61.111 21.36 11.90 41.77 4.17
1829 2275 2.555547 GGCGATAGGGCATGCAACC 61.556 63.158 21.36 12.66 41.77 3.77
1835 2281 2.828549 GGGCATGCAACCCTACCG 60.829 66.667 21.36 0.00 44.68 4.02
1836 2282 3.518068 GGCATGCAACCCTACCGC 61.518 66.667 21.36 0.00 0.00 5.68
1837 2283 3.518068 GCATGCAACCCTACCGCC 61.518 66.667 14.21 0.00 0.00 6.13
1838 2284 2.045438 CATGCAACCCTACCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
1839 2285 2.114670 CATGCAACCCTACCGCCAG 61.115 63.158 0.00 0.00 0.00 4.85
1840 2286 3.344137 ATGCAACCCTACCGCCAGG 62.344 63.158 0.00 0.00 45.13 4.45
1853 2299 3.074281 CCAGGTTCCTTGGCGGTA 58.926 61.111 0.00 0.00 0.00 4.02
1854 2300 1.078426 CCAGGTTCCTTGGCGGTAG 60.078 63.158 0.00 0.00 0.00 3.18
1855 2301 1.078426 CAGGTTCCTTGGCGGTAGG 60.078 63.158 0.00 0.00 0.00 3.18
1856 2302 1.538135 AGGTTCCTTGGCGGTAGGT 60.538 57.895 0.00 0.00 34.29 3.08
1857 2303 1.131928 AGGTTCCTTGGCGGTAGGTT 61.132 55.000 0.00 0.00 34.29 3.50
1858 2304 0.958876 GGTTCCTTGGCGGTAGGTTG 60.959 60.000 0.00 0.00 34.29 3.77
1859 2305 0.250597 GTTCCTTGGCGGTAGGTTGT 60.251 55.000 0.00 0.00 34.29 3.32
1860 2306 0.475044 TTCCTTGGCGGTAGGTTGTT 59.525 50.000 0.00 0.00 34.29 2.83
1861 2307 1.350071 TCCTTGGCGGTAGGTTGTTA 58.650 50.000 0.00 0.00 34.29 2.41
1862 2308 1.910671 TCCTTGGCGGTAGGTTGTTAT 59.089 47.619 0.00 0.00 34.29 1.89
1863 2309 3.106054 TCCTTGGCGGTAGGTTGTTATA 58.894 45.455 0.00 0.00 34.29 0.98
1864 2310 3.118665 TCCTTGGCGGTAGGTTGTTATAC 60.119 47.826 0.00 0.00 34.29 1.47
1865 2311 2.985957 TGGCGGTAGGTTGTTATACC 57.014 50.000 0.00 0.00 38.47 2.73
1866 2312 1.485895 TGGCGGTAGGTTGTTATACCC 59.514 52.381 0.00 0.00 38.60 3.69
1867 2313 1.764723 GGCGGTAGGTTGTTATACCCT 59.235 52.381 0.00 0.00 38.60 4.34
1868 2314 2.965147 GGCGGTAGGTTGTTATACCCTA 59.035 50.000 0.00 0.00 38.60 3.53
1869 2315 3.243873 GGCGGTAGGTTGTTATACCCTAC 60.244 52.174 6.55 6.55 46.56 3.18
1873 2319 5.188327 GTAGGTTGTTATACCCTACCGTC 57.812 47.826 0.00 0.00 43.19 4.79
1874 2320 3.711863 AGGTTGTTATACCCTACCGTCA 58.288 45.455 0.00 0.00 39.08 4.35
1875 2321 4.292643 AGGTTGTTATACCCTACCGTCAT 58.707 43.478 0.00 0.00 39.08 3.06
1876 2322 4.100498 AGGTTGTTATACCCTACCGTCATG 59.900 45.833 0.00 0.00 39.08 3.07
1877 2323 4.374399 GTTGTTATACCCTACCGTCATGG 58.626 47.826 0.00 0.00 46.41 3.66
1878 2324 7.143555 GGTTGTTATACCCTACCGTCATGGT 62.144 48.000 0.00 0.00 42.55 3.55
1879 2325 8.840726 GGTTGTTATACCCTACCGTCATGGTC 62.841 50.000 0.00 0.00 40.46 4.02
1886 2332 4.838152 CCGTCATGGTCCCTGGCG 62.838 72.222 13.59 13.59 41.21 5.69
1887 2333 4.838152 CGTCATGGTCCCTGGCGG 62.838 72.222 12.81 0.00 38.04 6.13
1888 2334 3.717294 GTCATGGTCCCTGGCGGT 61.717 66.667 0.00 0.00 0.00 5.68
1889 2335 2.039787 TCATGGTCCCTGGCGGTA 59.960 61.111 0.00 0.00 0.00 4.02
1890 2336 1.613928 TCATGGTCCCTGGCGGTAA 60.614 57.895 0.00 0.00 0.00 2.85
1891 2337 1.451387 CATGGTCCCTGGCGGTAAC 60.451 63.158 0.00 0.00 0.00 2.50
1892 2338 1.921346 ATGGTCCCTGGCGGTAACA 60.921 57.895 0.00 0.00 0.00 2.41
1893 2339 1.493854 ATGGTCCCTGGCGGTAACAA 61.494 55.000 0.00 0.00 0.00 2.83
1894 2340 1.073548 GGTCCCTGGCGGTAACAAA 59.926 57.895 0.00 0.00 0.00 2.83
1895 2341 0.537828 GGTCCCTGGCGGTAACAAAA 60.538 55.000 0.00 0.00 0.00 2.44
1896 2342 0.879090 GTCCCTGGCGGTAACAAAAG 59.121 55.000 0.00 0.00 0.00 2.27
1897 2343 0.766131 TCCCTGGCGGTAACAAAAGA 59.234 50.000 0.00 0.00 0.00 2.52
1898 2344 1.165270 CCCTGGCGGTAACAAAAGAG 58.835 55.000 0.00 0.00 0.00 2.85
1899 2345 1.544759 CCCTGGCGGTAACAAAAGAGT 60.545 52.381 0.00 0.00 0.00 3.24
1900 2346 1.804748 CCTGGCGGTAACAAAAGAGTC 59.195 52.381 0.00 0.00 0.00 3.36
1901 2347 2.489971 CTGGCGGTAACAAAAGAGTCA 58.510 47.619 0.00 0.00 0.00 3.41
1902 2348 2.480419 CTGGCGGTAACAAAAGAGTCAG 59.520 50.000 0.00 0.00 0.00 3.51
1903 2349 2.103432 TGGCGGTAACAAAAGAGTCAGA 59.897 45.455 0.00 0.00 0.00 3.27
1904 2350 3.244422 TGGCGGTAACAAAAGAGTCAGAT 60.244 43.478 0.00 0.00 0.00 2.90
1905 2351 3.371285 GGCGGTAACAAAAGAGTCAGATC 59.629 47.826 0.00 0.00 0.00 2.75
1906 2352 4.246458 GCGGTAACAAAAGAGTCAGATCT 58.754 43.478 0.00 0.00 0.00 2.75
1907 2353 4.691216 GCGGTAACAAAAGAGTCAGATCTT 59.309 41.667 0.00 0.00 41.31 2.40
1908 2354 5.867716 GCGGTAACAAAAGAGTCAGATCTTA 59.132 40.000 0.00 0.00 38.59 2.10
1909 2355 6.367969 GCGGTAACAAAAGAGTCAGATCTTAA 59.632 38.462 0.00 0.00 38.59 1.85
1910 2356 7.064728 GCGGTAACAAAAGAGTCAGATCTTAAT 59.935 37.037 0.00 0.00 38.59 1.40
1911 2357 8.936864 CGGTAACAAAAGAGTCAGATCTTAATT 58.063 33.333 0.00 0.00 38.59 1.40
1938 2384 6.845758 TTTTAAACTAGGGTCAGATCTCGA 57.154 37.500 0.00 0.00 0.00 4.04
1939 2385 6.845758 TTTAAACTAGGGTCAGATCTCGAA 57.154 37.500 0.00 0.00 0.00 3.71
1940 2386 7.419711 TTTAAACTAGGGTCAGATCTCGAAT 57.580 36.000 0.00 0.00 0.00 3.34
1941 2387 8.529424 TTTAAACTAGGGTCAGATCTCGAATA 57.471 34.615 0.00 0.00 0.00 1.75
1942 2388 8.707796 TTAAACTAGGGTCAGATCTCGAATAT 57.292 34.615 0.00 0.00 0.00 1.28
1943 2389 6.582677 AACTAGGGTCAGATCTCGAATATG 57.417 41.667 0.00 0.00 0.00 1.78
1944 2390 5.636123 ACTAGGGTCAGATCTCGAATATGT 58.364 41.667 0.00 0.00 0.00 2.29
1945 2391 6.071984 ACTAGGGTCAGATCTCGAATATGTT 58.928 40.000 0.00 0.00 0.00 2.71
1946 2392 5.878406 AGGGTCAGATCTCGAATATGTTT 57.122 39.130 0.00 0.00 0.00 2.83
1947 2393 5.605534 AGGGTCAGATCTCGAATATGTTTG 58.394 41.667 0.00 0.00 0.00 2.93
1948 2394 4.752101 GGGTCAGATCTCGAATATGTTTGG 59.248 45.833 0.00 0.00 0.00 3.28
1949 2395 5.453339 GGGTCAGATCTCGAATATGTTTGGA 60.453 44.000 0.00 0.00 0.00 3.53
1950 2396 6.049149 GGTCAGATCTCGAATATGTTTGGAA 58.951 40.000 0.00 0.00 0.00 3.53
1951 2397 6.538742 GGTCAGATCTCGAATATGTTTGGAAA 59.461 38.462 0.00 0.00 0.00 3.13
1952 2398 7.065803 GGTCAGATCTCGAATATGTTTGGAAAA 59.934 37.037 0.00 0.00 0.00 2.29
1953 2399 8.450964 GTCAGATCTCGAATATGTTTGGAAAAA 58.549 33.333 0.00 0.00 0.00 1.94
1954 2400 8.668353 TCAGATCTCGAATATGTTTGGAAAAAG 58.332 33.333 0.00 0.00 0.00 2.27
1955 2401 7.912250 CAGATCTCGAATATGTTTGGAAAAAGG 59.088 37.037 0.00 0.00 0.00 3.11
1956 2402 7.829211 AGATCTCGAATATGTTTGGAAAAAGGA 59.171 33.333 0.00 0.00 0.00 3.36
1957 2403 7.938140 TCTCGAATATGTTTGGAAAAAGGAT 57.062 32.000 0.00 0.00 0.00 3.24
1958 2404 7.985476 TCTCGAATATGTTTGGAAAAAGGATC 58.015 34.615 0.00 0.00 0.00 3.36
1959 2405 7.609918 TCTCGAATATGTTTGGAAAAAGGATCA 59.390 33.333 0.00 0.00 0.00 2.92
1960 2406 8.116651 TCGAATATGTTTGGAAAAAGGATCAA 57.883 30.769 0.00 0.00 0.00 2.57
1961 2407 8.580720 TCGAATATGTTTGGAAAAAGGATCAAA 58.419 29.630 0.00 0.00 0.00 2.69
1962 2408 9.202273 CGAATATGTTTGGAAAAAGGATCAAAA 57.798 29.630 0.00 0.00 32.01 2.44
1966 2412 6.112058 TGTTTGGAAAAAGGATCAAAACAGG 58.888 36.000 5.37 0.00 42.76 4.00
1967 2413 6.070538 TGTTTGGAAAAAGGATCAAAACAGGA 60.071 34.615 5.37 0.00 42.76 3.86
1968 2414 6.552445 TTGGAAAAAGGATCAAAACAGGAA 57.448 33.333 0.00 0.00 0.00 3.36
1969 2415 6.552445 TGGAAAAAGGATCAAAACAGGAAA 57.448 33.333 0.00 0.00 0.00 3.13
1970 2416 7.135591 TGGAAAAAGGATCAAAACAGGAAAT 57.864 32.000 0.00 0.00 0.00 2.17
1971 2417 7.572814 TGGAAAAAGGATCAAAACAGGAAATT 58.427 30.769 0.00 0.00 0.00 1.82
1972 2418 8.052141 TGGAAAAAGGATCAAAACAGGAAATTT 58.948 29.630 0.00 0.00 0.00 1.82
1973 2419 9.554395 GGAAAAAGGATCAAAACAGGAAATTTA 57.446 29.630 0.00 0.00 0.00 1.40
1975 2421 8.607441 AAAAGGATCAAAACAGGAAATTTAGC 57.393 30.769 0.00 0.00 0.00 3.09
1976 2422 6.286240 AGGATCAAAACAGGAAATTTAGCC 57.714 37.500 0.00 0.00 0.00 3.93
1977 2423 6.019108 AGGATCAAAACAGGAAATTTAGCCT 58.981 36.000 0.00 0.00 33.99 4.58
1978 2424 6.153510 AGGATCAAAACAGGAAATTTAGCCTC 59.846 38.462 0.00 0.00 30.41 4.70
1979 2425 6.071391 GGATCAAAACAGGAAATTTAGCCTCA 60.071 38.462 0.00 0.00 30.41 3.86
1980 2426 6.916360 TCAAAACAGGAAATTTAGCCTCAT 57.084 33.333 0.00 0.00 30.41 2.90
1981 2427 6.924111 TCAAAACAGGAAATTTAGCCTCATC 58.076 36.000 0.00 0.00 30.41 2.92
1982 2428 5.567138 AAACAGGAAATTTAGCCTCATCG 57.433 39.130 0.00 0.00 30.41 3.84
2127 2616 5.536916 TCCAAAGGCGGAAAGATAAAGAAAA 59.463 36.000 0.00 0.00 29.93 2.29
2133 2622 5.263948 GCGGAAAGATAAAGAAAATCGACC 58.736 41.667 0.00 0.00 0.00 4.79
2152 2641 7.429636 TCGACCGAAAGTAAAATGATTTTCT 57.570 32.000 6.40 2.12 34.19 2.52
2281 2770 3.383698 ACGAGAGATCAAACTAGGGGA 57.616 47.619 0.00 0.00 0.00 4.81
2311 2800 5.481122 TCAACAACATGGTCAATGGATCAAT 59.519 36.000 0.00 0.00 37.77 2.57
2313 2802 7.342541 TCAACAACATGGTCAATGGATCAATAT 59.657 33.333 0.00 0.00 37.77 1.28
2323 2812 6.998074 GTCAATGGATCAATATGTCCCTGTTA 59.002 38.462 0.00 0.00 33.45 2.41
2368 2857 5.767665 TGCTTGGCTCTTTCTTACAATGTTA 59.232 36.000 0.00 0.00 0.00 2.41
2416 2905 0.243095 AACCGCCGACACTCTTCTAC 59.757 55.000 0.00 0.00 0.00 2.59
2428 2917 4.475016 ACACTCTTCTACAATAGGGCCAAT 59.525 41.667 6.18 0.00 0.00 3.16
2435 2924 3.403228 ACAATAGGGCCAATCACCATT 57.597 42.857 6.18 0.00 0.00 3.16
2436 2925 4.534647 ACAATAGGGCCAATCACCATTA 57.465 40.909 6.18 0.00 0.00 1.90
2437 2926 4.215109 ACAATAGGGCCAATCACCATTAC 58.785 43.478 6.18 0.00 0.00 1.89
2442 2931 3.117016 AGGGCCAATCACCATTACATGAT 60.117 43.478 6.18 0.00 37.14 2.45
2447 2936 5.106948 GCCAATCACCATTACATGATCTACG 60.107 44.000 0.00 0.00 34.41 3.51
2482 2971 5.371526 AGCATCCACAACGATCAGATTATT 58.628 37.500 0.00 0.00 0.00 1.40
2492 2981 6.638168 ACGATCAGATTATTCATATGCACG 57.362 37.500 0.00 0.00 32.60 5.34
2493 2982 6.389906 ACGATCAGATTATTCATATGCACGA 58.610 36.000 0.00 0.00 31.62 4.35
2514 3003 3.821600 GACGATAGAGCTACCTCCAATCA 59.178 47.826 0.00 0.00 38.96 2.57
2522 3011 2.801342 GCTACCTCCAATCAAGAGAGCG 60.801 54.545 0.00 0.00 32.86 5.03
2563 3052 1.795170 GCAGCCACTTCAGCCGAAAA 61.795 55.000 0.00 0.00 0.00 2.29
2565 3054 0.954452 AGCCACTTCAGCCGAAAAAG 59.046 50.000 0.00 0.00 0.00 2.27
2584 3073 1.421410 GCGCCCACGACATGTTCTAG 61.421 60.000 0.00 0.00 43.93 2.43
2626 3116 3.055963 TGCTCCCTAATTTGGTGCATTTG 60.056 43.478 15.68 0.00 44.81 2.32
2627 3117 3.055891 GCTCCCTAATTTGGTGCATTTGT 60.056 43.478 13.28 0.00 41.03 2.83
2771 3261 4.012374 ACGTTGATCATTGGCTTTGATCT 58.988 39.130 22.12 7.44 46.28 2.75
2841 3331 6.942532 TTGTGCTAGAACTTGTTTCTCATT 57.057 33.333 1.64 0.00 44.02 2.57
2848 3338 7.589221 GCTAGAACTTGTTTCTCATTGTTCAAG 59.411 37.037 0.00 0.00 44.02 3.02
2985 3475 9.781834 GATGATGTAATCTTCTTCCGTAGATAG 57.218 37.037 0.00 0.00 45.81 2.08
3045 3535 8.786826 TTGACCATTCCTTGTTGTATACTTAG 57.213 34.615 4.17 0.00 0.00 2.18
3079 3569 9.367717 CATTTTGTACCATGAAAACATTTTTCG 57.632 29.630 0.00 0.00 0.00 3.46
3176 3675 1.918609 CACGCTTTCTAGTAAGTCGGC 59.081 52.381 20.74 6.13 32.68 5.54
3177 3676 1.542915 ACGCTTTCTAGTAAGTCGGCA 59.457 47.619 20.74 0.00 32.68 5.69
3191 3690 0.250124 TCGGCATATTTACGGCTGGG 60.250 55.000 0.00 0.00 34.70 4.45
3234 3733 6.998074 TGGCTTGGTATGTTCTCCATATTTAG 59.002 38.462 0.00 0.00 38.29 1.85
3366 3867 3.997681 GTCAAAGTTACCTCTTGCTCTCC 59.002 47.826 0.00 0.00 0.00 3.71
3368 3869 1.187087 AGTTACCTCTTGCTCTCCGG 58.813 55.000 0.00 0.00 0.00 5.14
3604 4108 2.239400 CAGGTATGATCACGGGAGCTA 58.761 52.381 3.82 0.00 0.00 3.32
3694 4198 3.141083 TGATCTAGCCCTCCTCATACAGT 59.859 47.826 0.00 0.00 0.00 3.55
3723 4227 1.303898 TGATGGGGGTTAGCATTGGA 58.696 50.000 0.00 0.00 0.00 3.53
3803 4307 7.256154 CCTCTTTCTAGGTTCTCAGTCTTTTCT 60.256 40.741 0.00 0.00 31.46 2.52
3930 4434 3.329386 TGAAGCATGGAAGAAAGAGACG 58.671 45.455 0.00 0.00 0.00 4.18
4171 4719 0.249657 GACCCGATCCTGCATCTGAC 60.250 60.000 0.00 0.00 0.00 3.51
4174 4722 0.176449 CCGATCCTGCATCTGACACA 59.824 55.000 0.00 0.00 0.00 3.72
4175 4723 1.405933 CCGATCCTGCATCTGACACAA 60.406 52.381 0.00 0.00 0.00 3.33
4205 4755 2.096496 CCACAGATGAAGCGGTGATTTC 59.904 50.000 0.30 0.00 36.29 2.17
4206 4756 2.096496 CACAGATGAAGCGGTGATTTCC 59.904 50.000 0.00 0.00 36.29 3.13
4272 4826 3.808466 AGAGCTCGCTTGATGATGTAA 57.192 42.857 8.37 0.00 0.00 2.41
4278 4832 4.984785 GCTCGCTTGATGATGTAAGTATCA 59.015 41.667 0.00 0.00 41.00 2.15
4280 4834 6.146837 GCTCGCTTGATGATGTAAGTATCATT 59.853 38.462 0.00 0.00 45.30 2.57
4406 4961 7.281100 CCAAGGTGATAAACTAATTCTCTGGTC 59.719 40.741 0.00 0.00 0.00 4.02
4478 5033 1.134371 GGGCTCCACGCTCTAATTCTT 60.134 52.381 0.00 0.00 35.72 2.52
4532 5087 7.112122 TGAATAAGCAACCTGAATCTACACAT 58.888 34.615 0.00 0.00 0.00 3.21
4582 5137 6.428295 ACCAGAACCCGATATTAAATTCCAA 58.572 36.000 0.00 0.00 0.00 3.53
4589 5144 7.532199 ACCCGATATTAAATTCCAAATACCCT 58.468 34.615 0.00 0.00 0.00 4.34
4734 5290 0.614134 TGCCAAGCCATGCCAATACA 60.614 50.000 0.00 0.00 0.00 2.29
4769 5325 7.068839 TGCTTACACTTCCCTCACAAAATTTTA 59.931 33.333 2.44 0.00 0.00 1.52
4825 5382 5.417266 TGCCAGTGCAATTACAATAAAGCTA 59.583 36.000 0.00 0.00 46.66 3.32
4858 5419 5.652518 GCACCAACCTTAACAAACAGTTTA 58.347 37.500 0.00 0.00 41.64 2.01
4967 5530 9.473007 TGGTTTCATAATATTCAAGACAATGGA 57.527 29.630 0.00 0.00 0.00 3.41
5003 5566 0.178873 TTAAGGTGGGGTGAGCTCCT 60.179 55.000 12.15 0.00 35.83 3.69
5027 5590 3.060615 GCCCAGCTCAGCCAACAG 61.061 66.667 0.00 0.00 0.00 3.16
5089 5652 2.236395 ACCGTTTCACTTCCCCTATCAG 59.764 50.000 0.00 0.00 0.00 2.90
5111 5674 1.760192 GTAGGAACTCGACCTAGCCA 58.240 55.000 0.67 0.00 40.15 4.75
5178 5741 2.689691 GGCTGCCCCACCTTATCCA 61.690 63.158 7.66 0.00 0.00 3.41
5186 5749 2.071778 CCACCTTATCCAATGGGGTG 57.928 55.000 15.68 15.68 44.77 4.61
5247 5810 9.489084 AAGTCAAAGTTTTATCTTTTTATGGCC 57.511 29.630 0.00 0.00 35.77 5.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
40 41 1.456287 GTTCTGTCCCAGGCCACTT 59.544 57.895 5.01 0.00 31.51 3.16
46 47 2.690653 TTTGCCGGTTCTGTCCCAGG 62.691 60.000 1.90 0.00 31.51 4.45
48 49 0.821711 CTTTTGCCGGTTCTGTCCCA 60.822 55.000 1.90 0.00 0.00 4.37
90 91 3.340337 TGCTTATCATGTCGACTCTCG 57.660 47.619 17.92 2.52 42.10 4.04
91 92 4.233789 GGATGCTTATCATGTCGACTCTC 58.766 47.826 17.92 0.00 35.05 3.20
111 112 2.940514 TGGTGTTCTAGATCAGGGGA 57.059 50.000 3.67 0.00 0.00 4.81
132 133 5.453480 GCATCCCCTAAACTTCTACCTAGTG 60.453 48.000 0.00 0.00 0.00 2.74
156 157 0.036010 AGAAGCTGGACATCCAACCG 60.036 55.000 1.50 0.00 46.97 4.44
158 159 4.943705 TGATTTAGAAGCTGGACATCCAAC 59.056 41.667 1.50 0.00 46.97 3.77
187 188 3.251004 GGACAGACAAAAATCAGTTCGCT 59.749 43.478 0.00 0.00 0.00 4.93
201 202 3.003378 CAGTATCTATTCGCGGACAGACA 59.997 47.826 0.00 0.00 0.00 3.41
202 203 3.250280 TCAGTATCTATTCGCGGACAGAC 59.750 47.826 0.00 0.00 0.00 3.51
206 207 5.106634 ACTGTATCAGTATCTATTCGCGGAC 60.107 44.000 6.13 0.00 43.46 4.79
228 229 3.220110 TCGGTCCGCTAAATCAGATACT 58.780 45.455 6.34 0.00 0.00 2.12
231 232 5.886474 TCTATATCGGTCCGCTAAATCAGAT 59.114 40.000 6.34 0.00 0.00 2.90
234 235 6.039047 GGTATCTATATCGGTCCGCTAAATCA 59.961 42.308 6.34 0.00 0.00 2.57
351 352 5.230097 CGTTGAGGTGAAGAAAAAGCTTTTC 59.770 40.000 24.04 16.65 0.00 2.29
409 837 3.303395 CGACACTTCTTCAAGGAAGCAAC 60.303 47.826 2.11 0.00 44.51 4.17
416 844 4.810790 ACTGATACGACACTTCTTCAAGG 58.189 43.478 0.00 0.00 33.37 3.61
443 871 1.818060 TGCAAATCTTTCGGGTGATGG 59.182 47.619 0.00 0.00 0.00 3.51
482 910 3.562779 AACGACTACGCCCCACACG 62.563 63.158 0.00 0.00 43.96 4.49
497 925 4.590400 ATCAGCAGAAAATCGAGAAACG 57.410 40.909 0.00 0.00 44.09 3.60
498 926 6.909357 CCATAATCAGCAGAAAATCGAGAAAC 59.091 38.462 0.00 0.00 0.00 2.78
499 927 6.599244 ACCATAATCAGCAGAAAATCGAGAAA 59.401 34.615 0.00 0.00 0.00 2.52
506 934 5.361857 CCCTGAACCATAATCAGCAGAAAAT 59.638 40.000 0.00 0.00 42.36 1.82
573 1001 4.308526 TGTGGTTTGCTGGGATGTATAA 57.691 40.909 0.00 0.00 0.00 0.98
677 1107 2.378038 CCTCTCTCCTCTCTTGTCCAG 58.622 57.143 0.00 0.00 0.00 3.86
680 1110 1.006639 ACCCCTCTCTCCTCTCTTGTC 59.993 57.143 0.00 0.00 0.00 3.18
721 1152 3.393800 CTGTATTCCACCGCCTCATTAG 58.606 50.000 0.00 0.00 0.00 1.73
722 1153 2.484770 GCTGTATTCCACCGCCTCATTA 60.485 50.000 0.00 0.00 31.64 1.90
723 1154 1.747206 GCTGTATTCCACCGCCTCATT 60.747 52.381 0.00 0.00 31.64 2.57
724 1155 0.179045 GCTGTATTCCACCGCCTCAT 60.179 55.000 0.00 0.00 31.64 2.90
725 1156 1.220749 GCTGTATTCCACCGCCTCA 59.779 57.895 0.00 0.00 31.64 3.86
726 1157 0.392461 TTGCTGTATTCCACCGCCTC 60.392 55.000 0.00 0.00 36.61 4.70
727 1158 0.676782 GTTGCTGTATTCCACCGCCT 60.677 55.000 0.00 0.00 36.61 5.52
747 1178 4.645588 TGTTTGTTTTGGGTCCTTTCGTAT 59.354 37.500 0.00 0.00 0.00 3.06
769 1200 1.521681 GCTACGGGCTAGTGGCTTG 60.522 63.158 12.74 0.00 43.87 4.01
817 1248 0.100503 GGGACATATTTGCACGGCAC 59.899 55.000 0.00 0.00 38.71 5.01
879 1310 1.153958 GGTCTTGAATGCGCTTGGC 60.154 57.895 9.73 0.00 43.96 4.52
911 1342 3.630204 CGCTCGTGTGCAAAGAGT 58.370 55.556 13.56 0.00 34.69 3.24
971 1410 3.685835 GCCCTAGAATCCAAGGAAAGGTC 60.686 52.174 1.16 0.00 34.58 3.85
1099 1542 3.338250 TTCCTCCGGCCCTGCAAT 61.338 61.111 0.00 0.00 0.00 3.56
1220 1664 5.650703 GCTAGCTTACAAAATAAACTCCCCA 59.349 40.000 7.70 0.00 0.00 4.96
1256 1701 2.818432 AGAAAGGAAGTGCATGCAGAAG 59.182 45.455 23.41 0.00 0.00 2.85
1312 1757 3.258123 AGCAAAGCCGACCAAATTAACAT 59.742 39.130 0.00 0.00 0.00 2.71
1387 1832 2.027385 TCTCCATCGAGGTCATGACTG 58.973 52.381 24.50 14.39 39.02 3.51
1399 1844 2.477825 GTGTCATCCACATCTCCATCG 58.522 52.381 0.00 0.00 43.92 3.84
1422 1867 0.179134 CTCTCCTACGCCGGAAACAG 60.179 60.000 5.05 0.00 31.44 3.16
1441 1886 1.115467 AGACGGTCATCCACTCATCC 58.885 55.000 11.27 0.00 0.00 3.51
1442 1887 1.804372 GCAGACGGTCATCCACTCATC 60.804 57.143 11.27 0.00 0.00 2.92
1443 1888 0.176680 GCAGACGGTCATCCACTCAT 59.823 55.000 11.27 0.00 0.00 2.90
1444 1889 1.184970 TGCAGACGGTCATCCACTCA 61.185 55.000 11.27 0.00 0.00 3.41
1445 1890 0.037326 TTGCAGACGGTCATCCACTC 60.037 55.000 11.27 0.00 0.00 3.51
1446 1891 0.036952 CTTGCAGACGGTCATCCACT 60.037 55.000 11.27 0.00 0.00 4.00
1447 1892 1.021390 CCTTGCAGACGGTCATCCAC 61.021 60.000 11.27 0.00 0.00 4.02
1448 1893 1.296392 CCTTGCAGACGGTCATCCA 59.704 57.895 11.27 1.28 0.00 3.41
1456 1901 0.108898 CCTCTCTCACCTTGCAGACG 60.109 60.000 0.00 0.00 0.00 4.18
1467 1912 1.056660 ACGAAAAAGCCCCTCTCTCA 58.943 50.000 0.00 0.00 0.00 3.27
1563 2009 3.004315 TCAAATCACGAAACTTTGCCTCC 59.996 43.478 0.00 0.00 31.50 4.30
1564 2010 3.975035 GTCAAATCACGAAACTTTGCCTC 59.025 43.478 0.00 0.00 31.50 4.70
1565 2011 3.243401 GGTCAAATCACGAAACTTTGCCT 60.243 43.478 0.00 0.00 31.50 4.75
1566 2012 3.049912 GGTCAAATCACGAAACTTTGCC 58.950 45.455 0.00 0.00 31.50 4.52
1567 2013 3.049912 GGGTCAAATCACGAAACTTTGC 58.950 45.455 0.00 0.00 31.50 3.68
1568 2014 4.568152 AGGGTCAAATCACGAAACTTTG 57.432 40.909 0.00 0.00 0.00 2.77
1569 2015 5.592104 AAAGGGTCAAATCACGAAACTTT 57.408 34.783 0.00 0.00 0.00 2.66
1570 2016 5.592104 AAAAGGGTCAAATCACGAAACTT 57.408 34.783 0.00 0.00 0.00 2.66
1571 2017 5.126384 TGAAAAAGGGTCAAATCACGAAACT 59.874 36.000 0.00 0.00 0.00 2.66
1572 2018 5.344884 TGAAAAAGGGTCAAATCACGAAAC 58.655 37.500 0.00 0.00 0.00 2.78
1573 2019 5.584253 TGAAAAAGGGTCAAATCACGAAA 57.416 34.783 0.00 0.00 0.00 3.46
1574 2020 5.584253 TTGAAAAAGGGTCAAATCACGAA 57.416 34.783 0.00 0.00 32.13 3.85
1575 2021 5.584253 TTTGAAAAAGGGTCAAATCACGA 57.416 34.783 0.00 0.00 39.46 4.35
1576 2022 5.276820 GCTTTTGAAAAAGGGTCAAATCACG 60.277 40.000 15.40 0.00 42.82 4.35
1577 2023 5.817296 AGCTTTTGAAAAAGGGTCAAATCAC 59.183 36.000 15.40 0.00 42.82 3.06
1578 2024 5.988287 AGCTTTTGAAAAAGGGTCAAATCA 58.012 33.333 15.40 0.00 42.82 2.57
1579 2025 8.607441 AATAGCTTTTGAAAAAGGGTCAAATC 57.393 30.769 15.40 0.00 42.82 2.17
1580 2026 7.384932 CGAATAGCTTTTGAAAAAGGGTCAAAT 59.615 33.333 15.40 0.00 42.82 2.32
1581 2027 6.699642 CGAATAGCTTTTGAAAAAGGGTCAAA 59.300 34.615 15.40 0.00 44.24 2.69
1582 2028 6.039941 TCGAATAGCTTTTGAAAAAGGGTCAA 59.960 34.615 15.40 0.00 44.24 3.18
1583 2029 5.533154 TCGAATAGCTTTTGAAAAAGGGTCA 59.467 36.000 15.40 0.00 44.24 4.02
1584 2030 6.009115 TCGAATAGCTTTTGAAAAAGGGTC 57.991 37.500 15.40 1.75 44.24 4.46
1585 2031 6.399639 TTCGAATAGCTTTTGAAAAAGGGT 57.600 33.333 15.40 4.01 44.24 4.34
1586 2032 7.814587 AGATTTCGAATAGCTTTTGAAAAAGGG 59.185 33.333 19.20 0.00 44.24 3.95
1587 2033 8.642020 CAGATTTCGAATAGCTTTTGAAAAAGG 58.358 33.333 19.20 12.06 44.24 3.11
1588 2034 8.642020 CCAGATTTCGAATAGCTTTTGAAAAAG 58.358 33.333 19.20 10.53 46.25 2.27
1589 2035 8.356657 TCCAGATTTCGAATAGCTTTTGAAAAA 58.643 29.630 19.20 8.34 32.86 1.94
1590 2036 7.881142 TCCAGATTTCGAATAGCTTTTGAAAA 58.119 30.769 19.20 10.10 32.86 2.29
1591 2037 7.447374 TCCAGATTTCGAATAGCTTTTGAAA 57.553 32.000 18.31 18.31 33.56 2.69
1592 2038 7.447374 TTCCAGATTTCGAATAGCTTTTGAA 57.553 32.000 0.00 0.00 0.00 2.69
1593 2039 7.447374 TTTCCAGATTTCGAATAGCTTTTGA 57.553 32.000 0.00 0.00 0.00 2.69
1594 2040 8.519492 TTTTTCCAGATTTCGAATAGCTTTTG 57.481 30.769 0.00 0.00 0.00 2.44
1617 2063 6.429385 AGCAAAAGAGTCAGATCTCGATTTTT 59.571 34.615 0.00 1.97 39.21 1.94
1618 2064 5.936956 AGCAAAAGAGTCAGATCTCGATTTT 59.063 36.000 0.00 0.00 39.21 1.82
1619 2065 5.486526 AGCAAAAGAGTCAGATCTCGATTT 58.513 37.500 0.00 0.00 39.21 2.17
1620 2066 5.083533 AGCAAAAGAGTCAGATCTCGATT 57.916 39.130 0.00 0.00 39.21 3.34
1621 2067 4.734398 AGCAAAAGAGTCAGATCTCGAT 57.266 40.909 0.00 0.00 39.21 3.59
1622 2068 4.142359 GGTAGCAAAAGAGTCAGATCTCGA 60.142 45.833 0.00 0.00 39.21 4.04
1623 2069 4.109050 GGTAGCAAAAGAGTCAGATCTCG 58.891 47.826 0.00 0.00 39.21 4.04
1624 2070 4.109050 CGGTAGCAAAAGAGTCAGATCTC 58.891 47.826 0.00 0.00 34.96 2.75
1625 2071 3.677424 GCGGTAGCAAAAGAGTCAGATCT 60.677 47.826 0.00 0.00 44.35 2.75
1626 2072 2.605366 GCGGTAGCAAAAGAGTCAGATC 59.395 50.000 0.00 0.00 44.35 2.75
1627 2073 2.622436 GCGGTAGCAAAAGAGTCAGAT 58.378 47.619 0.00 0.00 44.35 2.90
1628 2074 2.080286 GCGGTAGCAAAAGAGTCAGA 57.920 50.000 0.00 0.00 44.35 3.27
1632 2078 3.931747 ACTCTGGCGGTAGCAAAAGAGT 61.932 50.000 12.24 12.24 46.20 3.24
1640 2086 1.227380 CATGGACTCTGGCGGTAGC 60.227 63.158 0.00 0.00 44.18 3.58
1641 2087 1.443407 CCATGGACTCTGGCGGTAG 59.557 63.158 5.56 0.00 0.00 3.18
1642 2088 3.628989 CCATGGACTCTGGCGGTA 58.371 61.111 5.56 0.00 0.00 4.02
1647 2093 0.467384 CCTACTGCCATGGACTCTGG 59.533 60.000 18.40 7.54 36.81 3.86
1648 2094 0.467384 CCCTACTGCCATGGACTCTG 59.533 60.000 18.40 4.49 0.00 3.35
1649 2095 0.043334 ACCCTACTGCCATGGACTCT 59.957 55.000 18.40 0.00 0.00 3.24
1650 2096 0.466124 GACCCTACTGCCATGGACTC 59.534 60.000 18.40 0.00 0.00 3.36
1651 2097 0.043334 AGACCCTACTGCCATGGACT 59.957 55.000 18.40 0.00 0.00 3.85
1652 2098 1.789523 TAGACCCTACTGCCATGGAC 58.210 55.000 18.40 7.64 0.00 4.02
1653 2099 2.116238 GTTAGACCCTACTGCCATGGA 58.884 52.381 18.40 0.00 0.00 3.41
1654 2100 1.837439 TGTTAGACCCTACTGCCATGG 59.163 52.381 7.63 7.63 0.00 3.66
1655 2101 2.743183 GCTGTTAGACCCTACTGCCATG 60.743 54.545 0.00 0.00 34.38 3.66
1656 2102 1.486726 GCTGTTAGACCCTACTGCCAT 59.513 52.381 0.00 0.00 34.38 4.40
1657 2103 0.902531 GCTGTTAGACCCTACTGCCA 59.097 55.000 0.00 0.00 34.38 4.92
1658 2104 3.762674 GCTGTTAGACCCTACTGCC 57.237 57.895 0.00 0.00 34.38 4.85
1659 2105 1.196012 AGGCTGTTAGACCCTACTGC 58.804 55.000 0.00 0.00 38.16 4.40
1660 2106 2.694109 GGTAGGCTGTTAGACCCTACTG 59.306 54.545 13.81 0.00 46.54 2.74
1661 2107 2.686118 CGGTAGGCTGTTAGACCCTACT 60.686 54.545 13.81 0.00 46.54 2.57
1662 2108 1.680207 CGGTAGGCTGTTAGACCCTAC 59.320 57.143 0.00 7.39 46.60 3.18
1663 2109 2.025863 GCGGTAGGCTGTTAGACCCTA 61.026 57.143 0.00 0.00 39.11 3.53
1664 2110 1.328430 GCGGTAGGCTGTTAGACCCT 61.328 60.000 0.00 0.00 39.11 4.34
1665 2111 1.143401 GCGGTAGGCTGTTAGACCC 59.857 63.158 0.00 0.00 39.11 4.46
1666 2112 1.143401 GGCGGTAGGCTGTTAGACC 59.857 63.158 0.00 0.00 42.94 3.85
1667 2113 0.179108 CTGGCGGTAGGCTGTTAGAC 60.179 60.000 0.00 0.00 44.18 2.59
1668 2114 1.327690 CCTGGCGGTAGGCTGTTAGA 61.328 60.000 0.00 0.00 44.18 2.10
1669 2115 1.144057 CCTGGCGGTAGGCTGTTAG 59.856 63.158 0.00 0.00 44.18 2.34
1670 2116 2.363975 CCCTGGCGGTAGGCTGTTA 61.364 63.158 0.00 0.00 44.18 2.41
1671 2117 3.717294 CCCTGGCGGTAGGCTGTT 61.717 66.667 0.00 0.00 44.18 3.16
1672 2118 4.715130 TCCCTGGCGGTAGGCTGT 62.715 66.667 0.00 0.00 44.18 4.40
1673 2119 4.162690 GTCCCTGGCGGTAGGCTG 62.163 72.222 0.00 0.00 44.18 4.85
1674 2120 3.925914 AAGTCCCTGGCGGTAGGCT 62.926 63.158 0.00 0.00 44.18 4.58
1675 2121 2.967946 AAAGTCCCTGGCGGTAGGC 61.968 63.158 0.00 0.00 44.11 3.93
1676 2122 1.078426 CAAAGTCCCTGGCGGTAGG 60.078 63.158 0.00 0.00 37.59 3.18
1677 2123 1.078426 CCAAAGTCCCTGGCGGTAG 60.078 63.158 0.00 0.00 0.00 3.18
1678 2124 3.074281 CCAAAGTCCCTGGCGGTA 58.926 61.111 0.00 0.00 0.00 4.02
1683 2129 1.078426 CTACCGCCAAAGTCCCTGG 60.078 63.158 0.00 0.00 36.99 4.45
1684 2130 1.078426 CCTACCGCCAAAGTCCCTG 60.078 63.158 0.00 0.00 0.00 4.45
1685 2131 0.838987 TTCCTACCGCCAAAGTCCCT 60.839 55.000 0.00 0.00 0.00 4.20
1686 2132 0.037160 TTTCCTACCGCCAAAGTCCC 59.963 55.000 0.00 0.00 0.00 4.46
1687 2133 1.162698 GTTTCCTACCGCCAAAGTCC 58.837 55.000 0.00 0.00 0.00 3.85
1688 2134 1.886886 TGTTTCCTACCGCCAAAGTC 58.113 50.000 0.00 0.00 0.00 3.01
1689 2135 2.039879 AGATGTTTCCTACCGCCAAAGT 59.960 45.455 0.00 0.00 0.00 2.66
1690 2136 2.678336 GAGATGTTTCCTACCGCCAAAG 59.322 50.000 0.00 0.00 0.00 2.77
1691 2137 2.304761 AGAGATGTTTCCTACCGCCAAA 59.695 45.455 0.00 0.00 0.00 3.28
1692 2138 1.906574 AGAGATGTTTCCTACCGCCAA 59.093 47.619 0.00 0.00 0.00 4.52
1693 2139 1.568504 AGAGATGTTTCCTACCGCCA 58.431 50.000 0.00 0.00 0.00 5.69
1694 2140 2.223994 GGTAGAGATGTTTCCTACCGCC 60.224 54.545 0.00 0.00 41.83 6.13
1695 2141 3.095102 GGTAGAGATGTTTCCTACCGC 57.905 52.381 0.00 0.00 41.83 5.68
1697 2143 2.223994 GGCGGTAGAGATGTTTCCTACC 60.224 54.545 0.00 0.00 45.47 3.18
1698 2144 2.429610 TGGCGGTAGAGATGTTTCCTAC 59.570 50.000 0.00 0.00 33.79 3.18
1699 2145 2.742348 TGGCGGTAGAGATGTTTCCTA 58.258 47.619 0.00 0.00 0.00 2.94
1700 2146 1.568504 TGGCGGTAGAGATGTTTCCT 58.431 50.000 0.00 0.00 0.00 3.36
1701 2147 2.396590 TTGGCGGTAGAGATGTTTCC 57.603 50.000 0.00 0.00 0.00 3.13
1702 2148 3.125316 CAGTTTGGCGGTAGAGATGTTTC 59.875 47.826 0.00 0.00 0.00 2.78
1703 2149 3.074412 CAGTTTGGCGGTAGAGATGTTT 58.926 45.455 0.00 0.00 0.00 2.83
1704 2150 2.615493 CCAGTTTGGCGGTAGAGATGTT 60.615 50.000 0.00 0.00 0.00 2.71
1705 2151 1.066143 CCAGTTTGGCGGTAGAGATGT 60.066 52.381 0.00 0.00 0.00 3.06
1706 2152 1.656652 CCAGTTTGGCGGTAGAGATG 58.343 55.000 0.00 0.00 0.00 2.90
1717 2163 2.033448 TACCGCCAGCCAGTTTGG 59.967 61.111 0.00 0.00 41.55 3.28
1718 2164 2.690778 GCTACCGCCAGCCAGTTTG 61.691 63.158 0.00 0.00 35.40 2.93
1719 2165 2.359975 GCTACCGCCAGCCAGTTT 60.360 61.111 0.00 0.00 35.40 2.66
1729 2175 1.892391 GGGTTATGCAGGCTACCGC 60.892 63.158 0.00 0.00 0.00 5.68
1730 2176 1.045407 TAGGGTTATGCAGGCTACCG 58.955 55.000 0.00 0.00 0.00 4.02
1731 2177 1.071857 GGTAGGGTTATGCAGGCTACC 59.928 57.143 0.00 0.00 0.00 3.18
1732 2178 1.270147 CGGTAGGGTTATGCAGGCTAC 60.270 57.143 0.00 0.00 0.00 3.58
1733 2179 1.045407 CGGTAGGGTTATGCAGGCTA 58.955 55.000 0.00 0.00 0.00 3.93
1734 2180 0.981277 ACGGTAGGGTTATGCAGGCT 60.981 55.000 0.00 0.00 0.00 4.58
1735 2181 0.532196 GACGGTAGGGTTATGCAGGC 60.532 60.000 0.00 0.00 0.00 4.85
1736 2182 0.828022 TGACGGTAGGGTTATGCAGG 59.172 55.000 0.00 0.00 0.00 4.85
1737 2183 2.550978 CTTGACGGTAGGGTTATGCAG 58.449 52.381 0.00 0.00 0.00 4.41
1738 2184 1.208535 CCTTGACGGTAGGGTTATGCA 59.791 52.381 0.00 0.00 0.00 3.96
1739 2185 1.208776 ACCTTGACGGTAGGGTTATGC 59.791 52.381 2.22 0.00 46.73 3.14
1740 2186 2.419574 CCACCTTGACGGTAGGGTTATG 60.420 54.545 2.22 0.00 46.94 1.90
1741 2187 1.835531 CCACCTTGACGGTAGGGTTAT 59.164 52.381 2.22 0.00 46.94 1.89
1742 2188 1.269012 CCACCTTGACGGTAGGGTTA 58.731 55.000 2.22 0.00 46.94 2.85
1743 2189 0.765519 ACCACCTTGACGGTAGGGTT 60.766 55.000 2.22 0.00 46.94 4.11
1744 2190 0.765519 AACCACCTTGACGGTAGGGT 60.766 55.000 2.22 0.00 46.94 4.34
1745 2191 0.321298 CAACCACCTTGACGGTAGGG 60.321 60.000 2.22 0.00 46.94 3.53
1746 2192 0.321298 CCAACCACCTTGACGGTAGG 60.321 60.000 0.00 0.00 46.94 3.18
1747 2193 0.953960 GCCAACCACCTTGACGGTAG 60.954 60.000 0.00 0.00 46.94 3.18
1748 2194 1.071814 GCCAACCACCTTGACGGTA 59.928 57.895 0.00 0.00 46.94 4.02
1750 2196 3.353836 CGCCAACCACCTTGACGG 61.354 66.667 0.00 0.00 32.49 4.79
1751 2197 2.718747 TACCGCCAACCACCTTGACG 62.719 60.000 0.00 0.00 35.64 4.35
1752 2198 0.953960 CTACCGCCAACCACCTTGAC 60.954 60.000 0.00 0.00 30.42 3.18
1753 2199 1.373435 CTACCGCCAACCACCTTGA 59.627 57.895 0.00 0.00 30.42 3.02
1754 2200 1.674322 CCTACCGCCAACCACCTTG 60.674 63.158 0.00 0.00 0.00 3.61
1755 2201 2.754375 CCTACCGCCAACCACCTT 59.246 61.111 0.00 0.00 0.00 3.50
1756 2202 4.029809 GCCTACCGCCAACCACCT 62.030 66.667 0.00 0.00 0.00 4.00
1757 2203 4.338710 TGCCTACCGCCAACCACC 62.339 66.667 0.00 0.00 36.24 4.61
1758 2204 3.053896 GTGCCTACCGCCAACCAC 61.054 66.667 0.00 0.00 36.24 4.16
1759 2205 4.690719 CGTGCCTACCGCCAACCA 62.691 66.667 0.00 0.00 36.24 3.67
1760 2206 4.382320 TCGTGCCTACCGCCAACC 62.382 66.667 0.00 0.00 36.24 3.77
1761 2207 2.813908 CTCGTGCCTACCGCCAAC 60.814 66.667 0.00 0.00 36.24 3.77
1762 2208 4.752879 GCTCGTGCCTACCGCCAA 62.753 66.667 0.00 0.00 36.24 4.52
1767 2213 4.735132 TGCGTGCTCGTGCCTACC 62.735 66.667 10.18 0.00 39.49 3.18
1768 2214 3.479269 GTGCGTGCTCGTGCCTAC 61.479 66.667 10.18 0.00 39.49 3.18
1769 2215 3.680786 AGTGCGTGCTCGTGCCTA 61.681 61.111 10.18 0.00 39.49 3.93
1772 2218 4.360027 CACAGTGCGTGCTCGTGC 62.360 66.667 10.18 1.71 39.19 5.34
1780 2226 4.390909 GCCTAAGTATTAAACACAGTGCGT 59.609 41.667 0.00 0.00 0.00 5.24
1781 2227 4.491924 CGCCTAAGTATTAAACACAGTGCG 60.492 45.833 0.00 0.00 31.52 5.34
1782 2228 4.201783 CCGCCTAAGTATTAAACACAGTGC 60.202 45.833 0.00 0.00 0.00 4.40
1783 2229 4.331717 CCCGCCTAAGTATTAAACACAGTG 59.668 45.833 0.00 0.00 0.00 3.66
1784 2230 4.019950 ACCCGCCTAAGTATTAAACACAGT 60.020 41.667 0.00 0.00 0.00 3.55
1785 2231 4.510571 ACCCGCCTAAGTATTAAACACAG 58.489 43.478 0.00 0.00 0.00 3.66
1786 2232 4.556592 ACCCGCCTAAGTATTAAACACA 57.443 40.909 0.00 0.00 0.00 3.72
1787 2233 5.885230 AAACCCGCCTAAGTATTAAACAC 57.115 39.130 0.00 0.00 0.00 3.32
1788 2234 5.183522 CCAAAACCCGCCTAAGTATTAAACA 59.816 40.000 0.00 0.00 0.00 2.83
1789 2235 5.643664 CCAAAACCCGCCTAAGTATTAAAC 58.356 41.667 0.00 0.00 0.00 2.01
1790 2236 4.158209 GCCAAAACCCGCCTAAGTATTAAA 59.842 41.667 0.00 0.00 0.00 1.52
1791 2237 3.695556 GCCAAAACCCGCCTAAGTATTAA 59.304 43.478 0.00 0.00 0.00 1.40
1792 2238 3.281158 GCCAAAACCCGCCTAAGTATTA 58.719 45.455 0.00 0.00 0.00 0.98
1793 2239 2.097036 GCCAAAACCCGCCTAAGTATT 58.903 47.619 0.00 0.00 0.00 1.89
1794 2240 1.758936 GCCAAAACCCGCCTAAGTAT 58.241 50.000 0.00 0.00 0.00 2.12
1795 2241 0.674269 CGCCAAAACCCGCCTAAGTA 60.674 55.000 0.00 0.00 0.00 2.24
1796 2242 1.969589 CGCCAAAACCCGCCTAAGT 60.970 57.895 0.00 0.00 0.00 2.24
1797 2243 1.029947 ATCGCCAAAACCCGCCTAAG 61.030 55.000 0.00 0.00 0.00 2.18
1798 2244 0.252479 TATCGCCAAAACCCGCCTAA 59.748 50.000 0.00 0.00 0.00 2.69
1799 2245 0.179067 CTATCGCCAAAACCCGCCTA 60.179 55.000 0.00 0.00 0.00 3.93
1800 2246 1.451387 CTATCGCCAAAACCCGCCT 60.451 57.895 0.00 0.00 0.00 5.52
1801 2247 2.478033 CCTATCGCCAAAACCCGCC 61.478 63.158 0.00 0.00 0.00 6.13
1802 2248 2.478033 CCCTATCGCCAAAACCCGC 61.478 63.158 0.00 0.00 0.00 6.13
1803 2249 2.478033 GCCCTATCGCCAAAACCCG 61.478 63.158 0.00 0.00 0.00 5.28
1804 2250 0.755327 ATGCCCTATCGCCAAAACCC 60.755 55.000 0.00 0.00 0.00 4.11
1805 2251 0.385390 CATGCCCTATCGCCAAAACC 59.615 55.000 0.00 0.00 0.00 3.27
1806 2252 0.249031 GCATGCCCTATCGCCAAAAC 60.249 55.000 6.36 0.00 0.00 2.43
1807 2253 0.682532 TGCATGCCCTATCGCCAAAA 60.683 50.000 16.68 0.00 0.00 2.44
1808 2254 0.682532 TTGCATGCCCTATCGCCAAA 60.683 50.000 16.68 0.00 0.00 3.28
1809 2255 1.077140 TTGCATGCCCTATCGCCAA 60.077 52.632 16.68 0.00 0.00 4.52
1810 2256 1.823470 GTTGCATGCCCTATCGCCA 60.823 57.895 16.68 0.00 0.00 5.69
1811 2257 2.555547 GGTTGCATGCCCTATCGCC 61.556 63.158 16.68 3.02 0.00 5.54
1812 2258 2.555547 GGGTTGCATGCCCTATCGC 61.556 63.158 16.68 5.70 42.81 4.58
1813 2259 3.749981 GGGTTGCATGCCCTATCG 58.250 61.111 16.68 0.00 42.81 2.92
1818 2264 2.828549 CGGTAGGGTTGCATGCCC 60.829 66.667 16.68 16.67 46.43 5.36
1819 2265 3.518068 GCGGTAGGGTTGCATGCC 61.518 66.667 16.68 0.00 0.00 4.40
1820 2266 3.518068 GGCGGTAGGGTTGCATGC 61.518 66.667 11.82 11.82 0.00 4.06
1821 2267 2.045438 TGGCGGTAGGGTTGCATG 60.045 61.111 0.00 0.00 0.00 4.06
1822 2268 2.272146 CTGGCGGTAGGGTTGCAT 59.728 61.111 0.00 0.00 0.00 3.96
1823 2269 4.028490 CCTGGCGGTAGGGTTGCA 62.028 66.667 0.00 0.00 34.06 4.08
1824 2270 3.562732 AACCTGGCGGTAGGGTTGC 62.563 63.158 0.00 0.00 44.73 4.17
1825 2271 1.376812 GAACCTGGCGGTAGGGTTG 60.377 63.158 1.14 0.00 44.73 3.77
1826 2272 2.599757 GGAACCTGGCGGTAGGGTT 61.600 63.158 0.00 0.00 44.73 4.11
1827 2273 3.007323 GGAACCTGGCGGTAGGGT 61.007 66.667 0.00 0.00 44.73 4.34
1828 2274 2.298661 AAGGAACCTGGCGGTAGGG 61.299 63.158 0.00 0.00 44.73 3.53
1829 2275 1.078426 CAAGGAACCTGGCGGTAGG 60.078 63.158 0.00 0.00 44.73 3.18
1830 2276 1.078426 CCAAGGAACCTGGCGGTAG 60.078 63.158 0.00 0.00 44.73 3.18
1831 2277 3.074281 CCAAGGAACCTGGCGGTA 58.926 61.111 0.00 0.00 44.73 4.02
1835 2281 3.262448 TACCGCCAAGGAACCTGGC 62.262 63.158 17.83 17.83 45.00 4.85
1836 2282 1.078426 CTACCGCCAAGGAACCTGG 60.078 63.158 0.00 0.00 45.00 4.45
1837 2283 1.078426 CCTACCGCCAAGGAACCTG 60.078 63.158 0.00 0.00 45.00 4.00
1838 2284 1.131928 AACCTACCGCCAAGGAACCT 61.132 55.000 3.26 0.00 45.00 3.50
1839 2285 0.958876 CAACCTACCGCCAAGGAACC 60.959 60.000 3.26 0.00 45.00 3.62
1840 2286 0.250597 ACAACCTACCGCCAAGGAAC 60.251 55.000 3.26 0.00 45.00 3.62
1841 2287 0.475044 AACAACCTACCGCCAAGGAA 59.525 50.000 3.26 0.00 45.00 3.36
1842 2288 1.350071 TAACAACCTACCGCCAAGGA 58.650 50.000 3.26 0.00 45.00 3.36
1843 2289 3.990838 GGTATAACAACCTACCGCCAAGG 60.991 52.174 0.00 0.00 40.35 3.61
1844 2290 3.200483 GGTATAACAACCTACCGCCAAG 58.800 50.000 0.00 0.00 36.53 3.61
1845 2291 2.093021 GGGTATAACAACCTACCGCCAA 60.093 50.000 0.00 0.00 39.65 4.52
1846 2292 1.485895 GGGTATAACAACCTACCGCCA 59.514 52.381 0.00 0.00 39.65 5.69
1847 2293 1.764723 AGGGTATAACAACCTACCGCC 59.235 52.381 0.00 0.00 39.65 6.13
1852 2298 4.865905 TGACGGTAGGGTATAACAACCTA 58.134 43.478 9.23 0.00 39.65 3.08
1853 2299 3.711863 TGACGGTAGGGTATAACAACCT 58.288 45.455 9.23 0.00 39.65 3.50
1854 2300 4.374399 CATGACGGTAGGGTATAACAACC 58.626 47.826 2.17 2.17 38.94 3.77
1855 2301 4.374399 CCATGACGGTAGGGTATAACAAC 58.626 47.826 0.00 0.00 0.00 3.32
1856 2302 4.675976 CCATGACGGTAGGGTATAACAA 57.324 45.455 0.00 0.00 0.00 2.83
1869 2315 4.838152 CGCCAGGGACCATGACGG 62.838 72.222 7.96 0.00 42.50 4.79
1870 2316 4.838152 CCGCCAGGGACCATGACG 62.838 72.222 7.96 7.95 38.47 4.35
1871 2317 1.906105 TTACCGCCAGGGACCATGAC 61.906 60.000 7.96 0.00 43.47 3.06
1872 2318 1.613928 TTACCGCCAGGGACCATGA 60.614 57.895 7.96 0.00 43.47 3.07
1873 2319 1.451387 GTTACCGCCAGGGACCATG 60.451 63.158 0.00 0.00 43.47 3.66
1874 2320 1.493854 TTGTTACCGCCAGGGACCAT 61.494 55.000 0.00 0.00 43.47 3.55
1875 2321 1.706995 TTTGTTACCGCCAGGGACCA 61.707 55.000 0.00 0.00 43.47 4.02
1876 2322 0.537828 TTTTGTTACCGCCAGGGACC 60.538 55.000 0.00 0.00 43.47 4.46
1877 2323 0.879090 CTTTTGTTACCGCCAGGGAC 59.121 55.000 0.00 0.00 43.47 4.46
1878 2324 0.766131 TCTTTTGTTACCGCCAGGGA 59.234 50.000 0.00 0.00 43.47 4.20
1879 2325 1.165270 CTCTTTTGTTACCGCCAGGG 58.835 55.000 0.00 0.00 43.47 4.45
1880 2326 1.804748 GACTCTTTTGTTACCGCCAGG 59.195 52.381 0.00 0.00 45.13 4.45
1881 2327 2.480419 CTGACTCTTTTGTTACCGCCAG 59.520 50.000 0.00 0.00 0.00 4.85
1882 2328 2.103432 TCTGACTCTTTTGTTACCGCCA 59.897 45.455 0.00 0.00 0.00 5.69
1883 2329 2.762745 TCTGACTCTTTTGTTACCGCC 58.237 47.619 0.00 0.00 0.00 6.13
1884 2330 4.246458 AGATCTGACTCTTTTGTTACCGC 58.754 43.478 0.00 0.00 0.00 5.68
1885 2331 7.884816 TTAAGATCTGACTCTTTTGTTACCG 57.115 36.000 0.00 0.00 36.82 4.02
1914 2360 7.235935 TCGAGATCTGACCCTAGTTTAAAAA 57.764 36.000 0.00 0.00 0.00 1.94
1915 2361 6.845758 TCGAGATCTGACCCTAGTTTAAAA 57.154 37.500 0.00 0.00 0.00 1.52
1916 2362 6.845758 TTCGAGATCTGACCCTAGTTTAAA 57.154 37.500 0.00 0.00 0.00 1.52
1917 2363 8.577296 CATATTCGAGATCTGACCCTAGTTTAA 58.423 37.037 0.00 0.00 0.00 1.52
1918 2364 7.724506 ACATATTCGAGATCTGACCCTAGTTTA 59.275 37.037 0.00 0.00 0.00 2.01
1919 2365 6.551601 ACATATTCGAGATCTGACCCTAGTTT 59.448 38.462 0.00 0.00 0.00 2.66
1920 2366 6.071984 ACATATTCGAGATCTGACCCTAGTT 58.928 40.000 0.00 0.00 0.00 2.24
1921 2367 5.636123 ACATATTCGAGATCTGACCCTAGT 58.364 41.667 0.00 0.00 0.00 2.57
1922 2368 6.582677 AACATATTCGAGATCTGACCCTAG 57.417 41.667 0.00 0.00 0.00 3.02
1923 2369 6.239317 CCAAACATATTCGAGATCTGACCCTA 60.239 42.308 0.00 0.00 0.00 3.53
1924 2370 5.453903 CCAAACATATTCGAGATCTGACCCT 60.454 44.000 0.00 0.00 0.00 4.34
1925 2371 4.752101 CCAAACATATTCGAGATCTGACCC 59.248 45.833 0.00 0.00 0.00 4.46
1926 2372 5.601662 TCCAAACATATTCGAGATCTGACC 58.398 41.667 0.00 0.00 0.00 4.02
1927 2373 7.539712 TTTCCAAACATATTCGAGATCTGAC 57.460 36.000 0.00 0.00 0.00 3.51
1928 2374 8.560355 TTTTTCCAAACATATTCGAGATCTGA 57.440 30.769 0.00 0.00 0.00 3.27
1929 2375 7.912250 CCTTTTTCCAAACATATTCGAGATCTG 59.088 37.037 0.00 0.00 0.00 2.90
1930 2376 7.829211 TCCTTTTTCCAAACATATTCGAGATCT 59.171 33.333 0.00 0.00 0.00 2.75
1931 2377 7.985476 TCCTTTTTCCAAACATATTCGAGATC 58.015 34.615 0.00 0.00 0.00 2.75
1932 2378 7.938140 TCCTTTTTCCAAACATATTCGAGAT 57.062 32.000 0.00 0.00 0.00 2.75
1933 2379 7.609918 TGATCCTTTTTCCAAACATATTCGAGA 59.390 33.333 0.00 0.00 0.00 4.04
1934 2380 7.761409 TGATCCTTTTTCCAAACATATTCGAG 58.239 34.615 0.00 0.00 0.00 4.04
1935 2381 7.695480 TGATCCTTTTTCCAAACATATTCGA 57.305 32.000 0.00 0.00 0.00 3.71
1936 2382 8.755696 TTTGATCCTTTTTCCAAACATATTCG 57.244 30.769 0.00 0.00 0.00 3.34
1938 2384 9.844257 TGTTTTGATCCTTTTTCCAAACATATT 57.156 25.926 0.00 0.00 35.22 1.28
1939 2385 9.492973 CTGTTTTGATCCTTTTTCCAAACATAT 57.507 29.630 4.27 0.00 37.79 1.78
1940 2386 7.930865 CCTGTTTTGATCCTTTTTCCAAACATA 59.069 33.333 4.27 0.00 37.79 2.29
1941 2387 6.767423 CCTGTTTTGATCCTTTTTCCAAACAT 59.233 34.615 4.27 0.00 37.79 2.71
1942 2388 6.070538 TCCTGTTTTGATCCTTTTTCCAAACA 60.071 34.615 0.00 0.00 36.77 2.83
1943 2389 6.345298 TCCTGTTTTGATCCTTTTTCCAAAC 58.655 36.000 0.00 0.00 32.33 2.93
1944 2390 6.552445 TCCTGTTTTGATCCTTTTTCCAAA 57.448 33.333 0.00 0.00 0.00 3.28
1945 2391 6.552445 TTCCTGTTTTGATCCTTTTTCCAA 57.448 33.333 0.00 0.00 0.00 3.53
1946 2392 6.552445 TTTCCTGTTTTGATCCTTTTTCCA 57.448 33.333 0.00 0.00 0.00 3.53
1947 2393 8.450578 AAATTTCCTGTTTTGATCCTTTTTCC 57.549 30.769 0.00 0.00 0.00 3.13
1949 2395 9.056005 GCTAAATTTCCTGTTTTGATCCTTTTT 57.944 29.630 0.00 0.00 0.00 1.94
1950 2396 7.661437 GGCTAAATTTCCTGTTTTGATCCTTTT 59.339 33.333 0.00 0.00 0.00 2.27
1951 2397 7.016563 AGGCTAAATTTCCTGTTTTGATCCTTT 59.983 33.333 0.00 0.00 0.00 3.11
1952 2398 6.498303 AGGCTAAATTTCCTGTTTTGATCCTT 59.502 34.615 0.00 0.00 0.00 3.36
1953 2399 6.019108 AGGCTAAATTTCCTGTTTTGATCCT 58.981 36.000 0.00 0.00 0.00 3.24
1954 2400 6.071391 TGAGGCTAAATTTCCTGTTTTGATCC 60.071 38.462 3.24 0.00 31.71 3.36
1955 2401 6.924111 TGAGGCTAAATTTCCTGTTTTGATC 58.076 36.000 3.24 0.00 31.71 2.92
1956 2402 6.916360 TGAGGCTAAATTTCCTGTTTTGAT 57.084 33.333 3.24 0.00 31.71 2.57
1957 2403 6.349280 CGATGAGGCTAAATTTCCTGTTTTGA 60.349 38.462 3.24 0.00 31.71 2.69
1958 2404 5.801947 CGATGAGGCTAAATTTCCTGTTTTG 59.198 40.000 3.24 0.00 31.71 2.44
1959 2405 5.105756 CCGATGAGGCTAAATTTCCTGTTTT 60.106 40.000 3.24 0.00 31.71 2.43
1960 2406 4.399303 CCGATGAGGCTAAATTTCCTGTTT 59.601 41.667 3.24 0.00 31.71 2.83
1961 2407 3.947834 CCGATGAGGCTAAATTTCCTGTT 59.052 43.478 3.24 0.00 31.71 3.16
1962 2408 3.545703 CCGATGAGGCTAAATTTCCTGT 58.454 45.455 3.24 0.00 31.71 4.00
1963 2409 2.880890 CCCGATGAGGCTAAATTTCCTG 59.119 50.000 3.24 0.00 39.21 3.86
1964 2410 2.777692 TCCCGATGAGGCTAAATTTCCT 59.222 45.455 0.00 0.00 39.21 3.36
1965 2411 3.208747 TCCCGATGAGGCTAAATTTCC 57.791 47.619 0.00 0.00 39.21 3.13
1966 2412 5.163713 GCATATCCCGATGAGGCTAAATTTC 60.164 44.000 0.00 0.00 39.21 2.17
1967 2413 4.702131 GCATATCCCGATGAGGCTAAATTT 59.298 41.667 0.00 0.00 39.21 1.82
1968 2414 4.263462 TGCATATCCCGATGAGGCTAAATT 60.263 41.667 0.00 0.00 39.21 1.82
1969 2415 3.264193 TGCATATCCCGATGAGGCTAAAT 59.736 43.478 0.00 0.00 39.21 1.40
1970 2416 2.637382 TGCATATCCCGATGAGGCTAAA 59.363 45.455 0.00 0.00 39.21 1.85
1971 2417 2.234661 CTGCATATCCCGATGAGGCTAA 59.765 50.000 0.00 0.00 39.21 3.09
1972 2418 1.827344 CTGCATATCCCGATGAGGCTA 59.173 52.381 0.00 0.00 39.21 3.93
1973 2419 0.612229 CTGCATATCCCGATGAGGCT 59.388 55.000 0.00 0.00 39.21 4.58
1974 2420 0.610174 TCTGCATATCCCGATGAGGC 59.390 55.000 0.00 0.00 39.21 4.70
1975 2421 1.206610 CCTCTGCATATCCCGATGAGG 59.793 57.143 0.00 0.00 40.63 3.86
1976 2422 2.166050 CTCCTCTGCATATCCCGATGAG 59.834 54.545 0.00 0.00 0.00 2.90
1977 2423 2.174360 CTCCTCTGCATATCCCGATGA 58.826 52.381 0.00 0.00 0.00 2.92
1978 2424 1.405256 GCTCCTCTGCATATCCCGATG 60.405 57.143 0.00 0.00 0.00 3.84
1979 2425 0.901124 GCTCCTCTGCATATCCCGAT 59.099 55.000 0.00 0.00 0.00 4.18
1980 2426 1.527433 CGCTCCTCTGCATATCCCGA 61.527 60.000 0.00 0.00 0.00 5.14
1981 2427 1.080230 CGCTCCTCTGCATATCCCG 60.080 63.158 0.00 0.00 0.00 5.14
1982 2428 1.294780 CCGCTCCTCTGCATATCCC 59.705 63.158 0.00 0.00 0.00 3.85
2067 2555 3.253432 ACGGCAAATGTTCTTCTTCTTCC 59.747 43.478 0.00 0.00 0.00 3.46
2127 2616 7.962918 CAGAAAATCATTTTACTTTCGGTCGAT 59.037 33.333 0.00 0.00 33.86 3.59
2133 2622 6.089417 GGCACCAGAAAATCATTTTACTTTCG 59.911 38.462 0.00 0.00 33.86 3.46
2206 2695 9.813080 GAAATTAATAAGCTAGCCATAAAGACG 57.187 33.333 12.13 0.00 0.00 4.18
2248 2737 6.715347 TGATCTCTCGTTTTCTCATGGATA 57.285 37.500 0.00 0.00 0.00 2.59
2253 2742 7.038659 CCTAGTTTGATCTCTCGTTTTCTCAT 58.961 38.462 0.00 0.00 0.00 2.90
2254 2743 6.390721 CCTAGTTTGATCTCTCGTTTTCTCA 58.609 40.000 0.00 0.00 0.00 3.27
2281 2770 5.279106 CCATTGACCATGTTGTTGAACTCAT 60.279 40.000 0.00 0.00 32.79 2.90
2311 2800 7.744733 TCATATGATTGCTTAACAGGGACATA 58.255 34.615 0.00 0.00 0.00 2.29
2313 2802 6.000246 TCATATGATTGCTTAACAGGGACA 58.000 37.500 0.00 0.00 0.00 4.02
2323 2812 3.198409 TGGTCGCTCATATGATTGCTT 57.802 42.857 5.72 0.00 0.00 3.91
2348 2837 8.458573 TTTTCTAACATTGTAAGAAAGAGCCA 57.541 30.769 0.00 0.00 39.62 4.75
2368 2857 5.126779 GTGACTTCAGGAAGGTTCTTTTCT 58.873 41.667 13.19 0.00 42.53 2.52
2416 2905 4.214310 TGTAATGGTGATTGGCCCTATTG 58.786 43.478 0.00 0.00 0.00 1.90
2428 2917 6.096282 TCTCAACGTAGATCATGTAATGGTGA 59.904 38.462 0.00 0.00 38.18 4.02
2435 2924 8.076781 GCTCTTAATCTCAACGTAGATCATGTA 58.923 37.037 1.38 0.00 35.10 2.29
2436 2925 6.920758 GCTCTTAATCTCAACGTAGATCATGT 59.079 38.462 1.38 0.00 35.10 3.21
2437 2926 6.920210 TGCTCTTAATCTCAACGTAGATCATG 59.080 38.462 1.38 0.00 35.10 3.07
2442 2931 5.359860 TGGATGCTCTTAATCTCAACGTAGA 59.640 40.000 0.00 0.00 0.00 2.59
2447 2936 5.446473 CGTTGTGGATGCTCTTAATCTCAAC 60.446 44.000 0.00 0.00 36.59 3.18
2482 2971 2.814336 AGCTCTATCGTCGTGCATATGA 59.186 45.455 6.97 0.00 0.00 2.15
2492 2981 3.821600 TGATTGGAGGTAGCTCTATCGTC 59.178 47.826 20.67 13.35 0.00 4.20
2493 2982 3.833732 TGATTGGAGGTAGCTCTATCGT 58.166 45.455 20.67 5.16 0.00 3.73
2514 3003 0.390998 GGCTTGAAGCTCGCTCTCTT 60.391 55.000 17.59 0.00 41.99 2.85
2522 3011 0.249398 TAACCGAGGGCTTGAAGCTC 59.751 55.000 17.59 13.88 43.65 4.09
2563 3052 2.281484 AACATGTCGTGGGCGCTT 60.281 55.556 7.64 0.00 38.14 4.68
2565 3054 1.421410 CTAGAACATGTCGTGGGCGC 61.421 60.000 0.00 0.00 38.14 6.53
2626 3116 4.957759 ATTTCATGGGCTACGTACAAAC 57.042 40.909 0.00 0.00 0.00 2.93
2627 3117 5.336055 CCAAATTTCATGGGCTACGTACAAA 60.336 40.000 0.00 0.00 34.15 2.83
2771 3261 1.066645 ACATCGCTGCTGATGACTTCA 60.067 47.619 28.13 0.00 46.98 3.02
2787 3277 8.461222 TGAATTGTATCCTCACATTTTGACATC 58.539 33.333 0.00 0.00 0.00 3.06
2963 3453 9.521841 TCATCTATCTACGGAAGAAGATTACAT 57.478 33.333 9.72 0.00 37.89 2.29
3079 3569 8.345565 GTGGAAATGTACCATGAGATTTATCAC 58.654 37.037 0.00 1.70 39.69 3.06
3159 3656 6.846325 AAATATGCCGACTTACTAGAAAGC 57.154 37.500 0.00 0.00 0.00 3.51
3176 3675 1.864711 CGACACCCAGCCGTAAATATG 59.135 52.381 0.00 0.00 0.00 1.78
3177 3676 1.483415 ACGACACCCAGCCGTAAATAT 59.517 47.619 0.00 0.00 34.52 1.28
3191 3690 2.093783 GCCACATTACAAGCTACGACAC 59.906 50.000 0.00 0.00 0.00 3.67
3234 3733 6.734104 AAATCTGAGCAGATGTTTCTACAC 57.266 37.500 13.30 0.00 46.75 2.90
3308 3809 9.417561 ACTAATGATGTCATTTCAAATCAGGAT 57.582 29.630 12.95 0.00 43.48 3.24
3310 3811 8.900781 AGACTAATGATGTCATTTCAAATCAGG 58.099 33.333 12.95 0.00 43.48 3.86
3366 3867 4.095932 TGCTATACGATAATCTACCTGCCG 59.904 45.833 0.00 0.00 0.00 5.69
3368 3869 6.197364 ACTGCTATACGATAATCTACCTGC 57.803 41.667 0.00 0.00 0.00 4.85
3489 3993 2.165030 GGACATGCTTCTTTGGTGATGG 59.835 50.000 0.00 0.00 0.00 3.51
3604 4108 2.946329 TGCAATACACGGTTGAAACAGT 59.054 40.909 0.00 0.00 37.83 3.55
3694 4198 0.995132 ACCCCCATCATGAGCATGGA 60.995 55.000 14.30 0.00 43.32 3.41
3723 4227 6.239008 CGGGGAATATCACATTGCAAATAACT 60.239 38.462 1.71 0.00 0.00 2.24
3803 4307 2.254546 AGTGTCATCGGCAGTTTGAA 57.745 45.000 0.00 0.00 0.00 2.69
3886 4390 5.515797 ACACCCTTCAGAAAAGCTTTAAC 57.484 39.130 13.10 9.94 0.00 2.01
3930 4434 4.913784 TGTACCAAACCCTTCTTATCACC 58.086 43.478 0.00 0.00 0.00 4.02
3971 4504 5.607477 CATCCTTAAAAGATAGGTACCGCA 58.393 41.667 6.18 0.00 33.15 5.69
4211 4761 9.899661 ATAGTACTTGATATCTCTGCTAGGTAG 57.100 37.037 0.00 0.00 0.00 3.18
4286 4841 7.401060 TCCAAATGGATACCTACATATGGTT 57.599 36.000 7.80 0.00 39.78 3.67
4345 4900 1.092348 GGAATGCTACCCAAACGGAC 58.908 55.000 0.00 0.00 34.64 4.79
4560 5115 9.893305 GTATTTGGAATTTAATATCGGGTTCTG 57.107 33.333 0.00 0.00 0.00 3.02
4582 5137 5.995897 GCGAGGATATACACAAAAGGGTATT 59.004 40.000 0.00 0.00 32.72 1.89
4589 5144 4.746535 TCTGGCGAGGATATACACAAAA 57.253 40.909 0.00 0.00 0.00 2.44
4698 5254 5.631512 GCTTGGCAAACGATTTTGTGTATAA 59.368 36.000 0.00 0.00 43.62 0.98
4858 5419 4.054780 ACAACTTACACGTGTGACAGAT 57.945 40.909 30.83 15.00 0.00 2.90
4921 5484 7.865706 AACCATGTTATCTTGTTAGCTAAGG 57.134 36.000 6.38 2.51 0.00 2.69
4967 5530 7.125659 CCCACCTTAAATTATGTCCATCCTTTT 59.874 37.037 0.00 0.00 0.00 2.27
5003 5566 1.601759 GCTGAGCTGGGCAAGTGAA 60.602 57.895 0.00 0.00 0.00 3.18
5027 5590 4.578105 GTCTGGGATGTTGGATCATCTTTC 59.422 45.833 0.00 0.00 42.45 2.62
5089 5652 1.330213 GCTAGGTCGAGTTCCTACGTC 59.670 57.143 0.00 0.00 36.60 4.34
5148 5711 2.280186 GCAGCCGCGCTACCTAAT 60.280 61.111 5.56 0.00 36.40 1.73
5186 5749 1.781786 TCTAGAGTCATGGGTGGAGC 58.218 55.000 0.00 0.00 0.00 4.70


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.