Multiple sequence alignment - TraesCS4A01G103700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G103700 chr4A 100.000 4609 0 0 1 4609 117284518 117279910 0.000000e+00 8512.0
1 TraesCS4A01G103700 chr4D 90.827 1112 56 22 1465 2569 348304323 348305395 0.000000e+00 1447.0
2 TraesCS4A01G103700 chr4D 94.169 909 38 9 3713 4609 348310004 348310909 0.000000e+00 1371.0
3 TraesCS4A01G103700 chr4D 88.879 1106 64 23 2574 3669 348305474 348306530 0.000000e+00 1306.0
4 TraesCS4A01G103700 chr4D 88.581 578 39 12 1 570 348302956 348303514 0.000000e+00 676.0
5 TraesCS4A01G103700 chr4D 83.676 680 42 20 592 1229 348303562 348304214 1.110000e-160 577.0
6 TraesCS4A01G103700 chr4B 93.246 918 44 9 3702 4609 428466528 428467437 0.000000e+00 1336.0
7 TraesCS4A01G103700 chr4B 91.561 628 44 7 2574 3195 428465447 428466071 0.000000e+00 857.0
8 TraesCS4A01G103700 chr4B 92.955 582 33 6 1769 2346 428463370 428463947 0.000000e+00 841.0
9 TraesCS4A01G103700 chr4B 84.831 712 50 25 1 700 428459790 428460455 0.000000e+00 664.0
10 TraesCS4A01G103700 chr4B 91.364 440 29 3 1338 1774 428461310 428461743 1.100000e-165 593.0
11 TraesCS4A01G103700 chr4B 87.309 457 19 6 716 1141 428460515 428460963 1.930000e-133 486.0
12 TraesCS4A01G103700 chr4B 93.237 207 13 1 2363 2569 428465166 428465371 2.080000e-78 303.0
13 TraesCS4A01G103700 chr4B 87.983 233 17 7 3262 3490 428466076 428466301 9.830000e-67 265.0
14 TraesCS4A01G103700 chr4B 90.000 140 9 2 3559 3693 428466320 428466459 4.740000e-40 176.0
15 TraesCS4A01G103700 chr4B 92.157 102 6 2 1126 1226 428461213 428461313 4.810000e-30 143.0
16 TraesCS4A01G103700 chr6B 95.690 116 5 0 1218 1333 120355511 120355396 2.190000e-43 187.0
17 TraesCS4A01G103700 chr6B 93.600 125 6 2 1216 1339 197245550 197245673 7.870000e-43 185.0
18 TraesCS4A01G103700 chr6B 90.541 74 7 0 3200 3273 139885221 139885294 1.060000e-16 99.0
19 TraesCS4A01G103700 chr6B 86.207 58 7 1 2576 2633 436493283 436493339 1.380000e-05 62.1
20 TraesCS4A01G103700 chr3D 95.726 117 4 1 1224 1339 128992638 128992754 2.190000e-43 187.0
21 TraesCS4A01G103700 chr1A 94.915 118 6 0 1223 1340 444123713 444123596 7.870000e-43 185.0
22 TraesCS4A01G103700 chr1A 87.209 86 11 0 3188 3273 27361936 27362021 1.060000e-16 99.0
23 TraesCS4A01G103700 chr5D 91.176 136 11 1 1225 1360 339105067 339105201 2.830000e-42 183.0
24 TraesCS4A01G103700 chr5D 92.857 70 4 1 3196 3264 371786367 371786436 2.930000e-17 100.0
25 TraesCS4A01G103700 chr5D 82.857 70 9 2 2578 2645 368000017 368000085 4.980000e-05 60.2
26 TraesCS4A01G103700 chr2B 94.958 119 3 2 1226 1344 743331703 743331818 2.830000e-42 183.0
27 TraesCS4A01G103700 chr6D 92.248 129 5 4 1206 1332 289719000 289718875 1.320000e-40 178.0
28 TraesCS4A01G103700 chr6D 90.000 70 6 1 3212 3280 155602028 155601959 6.350000e-14 89.8
29 TraesCS4A01G103700 chr6D 84.906 53 7 1 2576 2628 274302755 274302806 8.000000e-03 52.8
30 TraesCS4A01G103700 chr5B 90.977 133 11 1 1226 1357 614236427 614236295 1.320000e-40 178.0
31 TraesCS4A01G103700 chr7B 88.811 143 11 3 1223 1365 594046785 594046648 2.210000e-38 171.0
32 TraesCS4A01G103700 chr5A 91.781 73 6 0 3196 3268 474816545 474816617 8.160000e-18 102.0
33 TraesCS4A01G103700 chr5A 100.000 28 0 0 3478 3505 340626375 340626348 8.000000e-03 52.8
34 TraesCS4A01G103700 chr7D 90.541 74 7 0 3200 3273 165657940 165657867 1.060000e-16 99.0
35 TraesCS4A01G103700 chr2A 88.312 77 9 0 3197 3273 45481573 45481649 4.910000e-15 93.5
36 TraesCS4A01G103700 chr6A 90.000 70 6 1 3212 3280 209391408 209391339 6.350000e-14 89.8
37 TraesCS4A01G103700 chr6A 84.906 53 7 1 2576 2628 392941980 392941929 8.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G103700 chr4A 117279910 117284518 4608 True 8512.0 8512 100.0000 1 4609 1 chr4A.!!$R1 4608
1 TraesCS4A01G103700 chr4D 348302956 348310909 7953 False 1075.4 1447 89.2264 1 4609 5 chr4D.!!$F1 4608
2 TraesCS4A01G103700 chr4B 428459790 428467437 7647 False 566.4 1336 90.4643 1 4609 10 chr4B.!!$F1 4608

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 831 0.099968 CGACTAATTGTCTCCGGCGA 59.900 55.000 9.30 0.00 43.25 5.54 F
1336 1750 0.375106 CGAACGGAGGGAGTACGTAC 59.625 60.000 18.10 18.10 40.31 3.67 F
1399 1813 1.002544 AGCACCCTAAGCTCACTCAAC 59.997 52.381 0.00 0.00 38.01 3.18 F
1565 1996 1.202891 AGGAACTGCAAGGTACCAACC 60.203 52.381 15.94 1.53 31.29 3.77 F
3071 6424 0.613260 ACGCCTGAAATACCAGCTCA 59.387 50.000 0.00 0.00 32.97 4.26 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1565 1996 0.588737 TCGGAAGATGAGCTCGATCG 59.411 55.000 9.36 9.36 33.31 3.69 R
2352 4424 2.110188 AGCTGATATAAGGGACCGAGGA 59.890 50.000 0.00 0.00 0.00 3.71 R
2569 5843 2.667470 AGACTACATCCCTATGTGCGT 58.333 47.619 1.34 0.00 45.99 5.24 R
3458 6813 0.462789 TTCCTTAACGAGATCGGGGC 59.537 55.000 7.22 0.00 44.95 5.80 R
4164 10991 0.108585 TCAACCTGGACCTTGTGCTC 59.891 55.000 0.00 0.00 0.00 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 4.557205 ACGATGTTTCCTTATATCTCGGC 58.443 43.478 0.00 0.00 0.00 5.54
36 37 4.038763 ACGATGTTTCCTTATATCTCGGCA 59.961 41.667 0.00 0.00 0.00 5.69
51 52 0.575390 CGGCATCGGTTCGTGTTATC 59.425 55.000 0.00 0.00 0.00 1.75
64 65 3.386726 TCGTGTTATCTTCCAATCCCGAT 59.613 43.478 0.00 0.00 0.00 4.18
69 70 7.201661 CGTGTTATCTTCCAATCCCGATAAAAA 60.202 37.037 0.00 0.00 32.15 1.94
80 81 5.070770 TCCCGATAAAAACTTACACGCTA 57.929 39.130 0.00 0.00 0.00 4.26
145 146 3.306502 CCAAATATGCATGCCAGGGAATC 60.307 47.826 16.68 0.00 0.00 2.52
237 238 8.908786 GCATATAGGCCATGCTTTTATATAGA 57.091 34.615 17.12 0.00 44.35 1.98
238 239 8.997323 GCATATAGGCCATGCTTTTATATAGAG 58.003 37.037 17.12 1.60 44.35 2.43
273 278 8.301252 ACAAACTGGGTCTTATTGTAAACTTT 57.699 30.769 0.00 0.00 32.81 2.66
354 371 1.695242 TGAACCGGTGCTCCTTTCTTA 59.305 47.619 15.35 0.00 0.00 2.10
422 439 4.166144 ACATATTAAGGGGTTGCTAGCAGT 59.834 41.667 18.45 4.54 0.00 4.40
438 455 5.408909 GCTAGCAGTATCGACTACATACAGA 59.591 44.000 10.63 0.00 33.32 3.41
439 456 6.092944 GCTAGCAGTATCGACTACATACAGAT 59.907 42.308 10.63 0.00 33.32 2.90
440 457 6.885952 AGCAGTATCGACTACATACAGATT 57.114 37.500 0.00 0.00 33.32 2.40
441 458 6.904498 AGCAGTATCGACTACATACAGATTC 58.096 40.000 0.00 0.00 33.32 2.52
442 459 6.486993 AGCAGTATCGACTACATACAGATTCA 59.513 38.462 0.00 0.00 33.32 2.57
443 460 7.175816 AGCAGTATCGACTACATACAGATTCAT 59.824 37.037 0.00 0.00 33.32 2.57
444 461 7.483375 GCAGTATCGACTACATACAGATTCATC 59.517 40.741 0.00 0.00 33.32 2.92
461 478 0.578683 ATCATTCATGCGTTCGCTCG 59.421 50.000 17.63 9.00 0.00 5.03
544 561 3.750130 GTCCTAATCGCTCTATGTCGGTA 59.250 47.826 0.00 0.00 0.00 4.02
562 579 2.827921 GGTACCTCGTAGTTTCTTCCCA 59.172 50.000 4.06 0.00 0.00 4.37
571 621 1.275573 AGTTTCTTCCCAGTACGAGGC 59.724 52.381 0.00 0.00 0.00 4.70
581 631 2.693591 CCAGTACGAGGCTCCTAATTGA 59.306 50.000 9.32 0.00 0.00 2.57
582 632 3.132289 CCAGTACGAGGCTCCTAATTGAA 59.868 47.826 9.32 0.00 0.00 2.69
583 633 4.382685 CCAGTACGAGGCTCCTAATTGAAA 60.383 45.833 9.32 0.00 0.00 2.69
584 634 5.360591 CAGTACGAGGCTCCTAATTGAAAT 58.639 41.667 9.32 0.00 0.00 2.17
585 635 5.235186 CAGTACGAGGCTCCTAATTGAAATG 59.765 44.000 9.32 0.00 0.00 2.32
586 636 4.222124 ACGAGGCTCCTAATTGAAATGT 57.778 40.909 9.32 0.00 0.00 2.71
587 637 3.941483 ACGAGGCTCCTAATTGAAATGTG 59.059 43.478 9.32 0.00 0.00 3.21
588 638 4.191544 CGAGGCTCCTAATTGAAATGTGA 58.808 43.478 9.32 0.00 0.00 3.58
589 639 4.635765 CGAGGCTCCTAATTGAAATGTGAA 59.364 41.667 9.32 0.00 0.00 3.18
590 640 5.123820 CGAGGCTCCTAATTGAAATGTGAAA 59.876 40.000 9.32 0.00 0.00 2.69
598 648 5.616488 AATTGAAATGTGAAATGCTTGGC 57.384 34.783 0.00 0.00 0.00 4.52
601 651 2.068837 AATGTGAAATGCTTGGCGTG 57.931 45.000 0.00 0.00 0.00 5.34
605 655 0.515127 TGAAATGCTTGGCGTGTACG 59.485 50.000 0.00 0.00 43.27 3.67
628 678 1.757118 CAACGAGCTCCAGGGAGATAA 59.243 52.381 19.34 0.00 41.31 1.75
630 680 0.312416 CGAGCTCCAGGGAGATAACG 59.688 60.000 19.34 9.65 41.31 3.18
638 688 2.223923 CCAGGGAGATAACGAAGAGCTG 60.224 54.545 0.00 0.00 0.00 4.24
640 690 1.482278 GGAGATAACGAAGAGCTGCG 58.518 55.000 0.00 0.00 0.00 5.18
700 754 1.543802 TCGGCATGTTTTCAACCATCC 59.456 47.619 0.00 0.00 32.48 3.51
701 755 1.732077 CGGCATGTTTTCAACCATCCG 60.732 52.381 0.00 0.00 32.48 4.18
702 756 1.543802 GGCATGTTTTCAACCATCCGA 59.456 47.619 0.00 0.00 32.48 4.55
722 820 4.379186 CCGATAGTACGATGCCGACTAATT 60.379 45.833 0.00 0.00 39.50 1.40
733 831 0.099968 CGACTAATTGTCTCCGGCGA 59.900 55.000 9.30 0.00 43.25 5.54
740 838 2.434185 GTCTCCGGCGAATGTGCA 60.434 61.111 9.30 0.00 36.28 4.57
817 930 7.359181 CGCTTCTTCTTCTTCTTCTTCTTCTTC 60.359 40.741 0.00 0.00 0.00 2.87
855 968 1.735920 CAGCTGACGTCTGTGCTCC 60.736 63.158 21.51 6.60 33.03 4.70
881 1017 6.342906 TCAAAGTTTTCTTCGTACTTCTCCA 58.657 36.000 0.00 0.00 39.48 3.86
906 1042 2.676176 GCCCTACTTCCGTTTACCAGTC 60.676 54.545 0.00 0.00 0.00 3.51
911 1047 0.600782 TTCCGTTTACCAGTCCGCAC 60.601 55.000 0.00 0.00 0.00 5.34
914 1050 0.599204 CGTTTACCAGTCCGCACAGT 60.599 55.000 0.00 0.00 0.00 3.55
968 1104 7.541162 TGTATACTAGTACATTTTGTGCGTCT 58.459 34.615 4.31 0.00 38.05 4.18
992 1128 1.134580 GCTCCTTGATCACTAGCTGCA 60.135 52.381 13.36 0.00 0.00 4.41
1095 1238 7.870445 GTGATCACTAGATGGATTTTCTACTCC 59.130 40.741 18.83 0.00 33.72 3.85
1103 1246 4.380531 TGGATTTTCTACTCCATGATCGC 58.619 43.478 0.00 0.00 36.63 4.58
1104 1247 4.101585 TGGATTTTCTACTCCATGATCGCT 59.898 41.667 0.00 0.00 36.63 4.93
1105 1248 5.059833 GGATTTTCTACTCCATGATCGCTT 58.940 41.667 0.00 0.00 0.00 4.68
1178 1592 0.673644 CCTACCTTGACACCCGCTTG 60.674 60.000 0.00 0.00 0.00 4.01
1228 1642 2.093106 CCAGGTCGTCTGCTTACTACT 58.907 52.381 3.61 0.00 42.05 2.57
1229 1643 2.097791 CCAGGTCGTCTGCTTACTACTC 59.902 54.545 3.61 0.00 42.05 2.59
1230 1644 2.097791 CAGGTCGTCTGCTTACTACTCC 59.902 54.545 0.00 0.00 36.60 3.85
1231 1645 1.404748 GGTCGTCTGCTTACTACTCCC 59.595 57.143 0.00 0.00 0.00 4.30
1232 1646 2.367486 GTCGTCTGCTTACTACTCCCT 58.633 52.381 0.00 0.00 0.00 4.20
1233 1647 2.355444 GTCGTCTGCTTACTACTCCCTC 59.645 54.545 0.00 0.00 0.00 4.30
1234 1648 1.677052 CGTCTGCTTACTACTCCCTCC 59.323 57.143 0.00 0.00 0.00 4.30
1235 1649 1.677052 GTCTGCTTACTACTCCCTCCG 59.323 57.143 0.00 0.00 0.00 4.63
1236 1650 1.284198 TCTGCTTACTACTCCCTCCGT 59.716 52.381 0.00 0.00 0.00 4.69
1237 1651 2.100989 CTGCTTACTACTCCCTCCGTT 58.899 52.381 0.00 0.00 0.00 4.44
1238 1652 2.097825 TGCTTACTACTCCCTCCGTTC 58.902 52.381 0.00 0.00 0.00 3.95
1239 1653 2.097825 GCTTACTACTCCCTCCGTTCA 58.902 52.381 0.00 0.00 0.00 3.18
1240 1654 2.099427 GCTTACTACTCCCTCCGTTCAG 59.901 54.545 0.00 0.00 0.00 3.02
1241 1655 3.618351 CTTACTACTCCCTCCGTTCAGA 58.382 50.000 0.00 0.00 0.00 3.27
1242 1656 2.599408 ACTACTCCCTCCGTTCAGAA 57.401 50.000 0.00 0.00 0.00 3.02
1243 1657 3.103080 ACTACTCCCTCCGTTCAGAAT 57.897 47.619 0.00 0.00 0.00 2.40
1244 1658 3.442076 ACTACTCCCTCCGTTCAGAATT 58.558 45.455 0.00 0.00 0.00 2.17
1245 1659 4.607239 ACTACTCCCTCCGTTCAGAATTA 58.393 43.478 0.00 0.00 0.00 1.40
1246 1660 3.889520 ACTCCCTCCGTTCAGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
1247 1661 3.442076 ACTCCCTCCGTTCAGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
1248 1662 3.838903 ACTCCCTCCGTTCAGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
1249 1663 4.184629 CTCCCTCCGTTCAGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
1250 1664 3.581332 TCCCTCCGTTCAGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
1251 1665 3.933332 CCCTCCGTTCAGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
1252 1666 3.612860 CCTCCGTTCAGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
1253 1667 2.991190 TCCGTTCAGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
1254 1668 2.734606 CCGTTCAGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
1255 1669 3.181530 CCGTTCAGAATTACTTGTCGCAG 60.182 47.826 0.00 0.00 0.00 5.18
1256 1670 3.673338 CGTTCAGAATTACTTGTCGCAGA 59.327 43.478 0.00 0.00 0.00 4.26
1257 1671 4.149922 CGTTCAGAATTACTTGTCGCAGAA 59.850 41.667 0.00 0.00 39.69 3.02
1258 1672 5.333035 CGTTCAGAATTACTTGTCGCAGAAA 60.333 40.000 0.00 0.00 39.69 2.52
1259 1673 6.603095 GTTCAGAATTACTTGTCGCAGAAAT 58.397 36.000 0.00 0.00 39.69 2.17
1260 1674 7.411480 CGTTCAGAATTACTTGTCGCAGAAATA 60.411 37.037 0.00 0.00 39.69 1.40
1261 1675 7.525688 TCAGAATTACTTGTCGCAGAAATAG 57.474 36.000 0.00 0.00 39.69 1.73
1262 1676 7.320399 TCAGAATTACTTGTCGCAGAAATAGA 58.680 34.615 0.00 0.00 39.69 1.98
1263 1677 7.981789 TCAGAATTACTTGTCGCAGAAATAGAT 59.018 33.333 0.00 0.00 39.69 1.98
1264 1678 8.060679 CAGAATTACTTGTCGCAGAAATAGATG 58.939 37.037 0.00 0.00 39.69 2.90
1265 1679 7.766278 AGAATTACTTGTCGCAGAAATAGATGT 59.234 33.333 0.00 0.00 39.69 3.06
1266 1680 8.942338 AATTACTTGTCGCAGAAATAGATGTA 57.058 30.769 0.00 0.00 39.69 2.29
1267 1681 9.547753 AATTACTTGTCGCAGAAATAGATGTAT 57.452 29.630 0.00 0.00 39.69 2.29
1268 1682 8.575565 TTACTTGTCGCAGAAATAGATGTATC 57.424 34.615 0.00 0.00 39.69 2.24
1269 1683 6.810911 ACTTGTCGCAGAAATAGATGTATCT 58.189 36.000 0.00 0.00 39.69 1.98
1270 1684 7.941919 ACTTGTCGCAGAAATAGATGTATCTA 58.058 34.615 4.22 4.22 40.45 1.98
1271 1685 8.079203 ACTTGTCGCAGAAATAGATGTATCTAG 58.921 37.037 7.57 0.00 39.84 2.43
1272 1686 7.745620 TGTCGCAGAAATAGATGTATCTAGA 57.254 36.000 7.57 0.00 39.84 2.43
1273 1687 7.585867 TGTCGCAGAAATAGATGTATCTAGAC 58.414 38.462 0.00 7.60 39.84 2.59
1274 1688 6.739100 GTCGCAGAAATAGATGTATCTAGACG 59.261 42.308 0.00 5.27 39.84 4.18
1275 1689 6.427242 TCGCAGAAATAGATGTATCTAGACGT 59.573 38.462 0.00 0.00 42.20 4.34
1276 1690 7.601508 TCGCAGAAATAGATGTATCTAGACGTA 59.398 37.037 0.00 0.00 42.20 3.57
1277 1691 8.391859 CGCAGAAATAGATGTATCTAGACGTAT 58.608 37.037 0.00 0.00 42.20 3.06
1304 1718 9.893634 TTTAGTTTTAGATACATCCATTTCCGA 57.106 29.630 0.00 0.00 0.00 4.55
1305 1719 9.542462 TTAGTTTTAGATACATCCATTTCCGAG 57.458 33.333 0.00 0.00 0.00 4.63
1306 1720 7.792032 AGTTTTAGATACATCCATTTCCGAGA 58.208 34.615 0.00 0.00 0.00 4.04
1307 1721 7.711339 AGTTTTAGATACATCCATTTCCGAGAC 59.289 37.037 0.00 0.00 0.00 3.36
1308 1722 6.724893 TTAGATACATCCATTTCCGAGACA 57.275 37.500 0.00 0.00 0.00 3.41
1309 1723 5.614324 AGATACATCCATTTCCGAGACAA 57.386 39.130 0.00 0.00 0.00 3.18
1310 1724 5.605534 AGATACATCCATTTCCGAGACAAG 58.394 41.667 0.00 0.00 0.00 3.16
1311 1725 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
1312 1726 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
1313 1727 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
1314 1728 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
1315 1729 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
1316 1730 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
1317 1731 5.183228 TCCATTTCCGAGACAAGTAATTCC 58.817 41.667 0.00 0.00 0.00 3.01
1318 1732 4.034048 CCATTTCCGAGACAAGTAATTCCG 59.966 45.833 0.00 0.00 0.00 4.30
1319 1733 4.524316 TTTCCGAGACAAGTAATTCCGA 57.476 40.909 0.00 0.00 0.00 4.55
1320 1734 4.524316 TTCCGAGACAAGTAATTCCGAA 57.476 40.909 0.00 0.00 0.00 4.30
1321 1735 3.841643 TCCGAGACAAGTAATTCCGAAC 58.158 45.455 0.00 0.00 0.00 3.95
1322 1736 2.597305 CCGAGACAAGTAATTCCGAACG 59.403 50.000 0.00 0.00 0.00 3.95
1323 1737 2.597305 CGAGACAAGTAATTCCGAACGG 59.403 50.000 6.94 6.94 0.00 4.44
1324 1738 3.671433 CGAGACAAGTAATTCCGAACGGA 60.671 47.826 12.04 12.04 43.52 4.69
1325 1739 3.846360 AGACAAGTAATTCCGAACGGAG 58.154 45.455 15.34 5.60 46.06 4.63
1326 1740 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
1327 1741 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
1328 1742 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
1329 1743 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
1330 1744 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
1331 1745 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
1332 1746 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
1333 1747 1.308069 TTCCGAACGGAGGGAGTACG 61.308 60.000 15.34 0.00 46.06 3.67
1336 1750 0.375106 CGAACGGAGGGAGTACGTAC 59.625 60.000 18.10 18.10 40.31 3.67
1374 1788 3.881089 TCCGAAACTTCCTTTCCTCAAAC 59.119 43.478 0.00 0.00 35.68 2.93
1397 1811 1.825474 GTAGCACCCTAAGCTCACTCA 59.175 52.381 0.00 0.00 42.32 3.41
1399 1813 1.002544 AGCACCCTAAGCTCACTCAAC 59.997 52.381 0.00 0.00 38.01 3.18
1404 1818 3.196685 ACCCTAAGCTCACTCAACATCTC 59.803 47.826 0.00 0.00 0.00 2.75
1405 1819 3.450457 CCCTAAGCTCACTCAACATCTCT 59.550 47.826 0.00 0.00 0.00 3.10
1406 1820 4.431809 CCTAAGCTCACTCAACATCTCTG 58.568 47.826 0.00 0.00 0.00 3.35
1407 1821 2.383368 AGCTCACTCAACATCTCTGC 57.617 50.000 0.00 0.00 0.00 4.26
1408 1822 1.622312 AGCTCACTCAACATCTCTGCA 59.378 47.619 0.00 0.00 0.00 4.41
1409 1823 2.236644 AGCTCACTCAACATCTCTGCAT 59.763 45.455 0.00 0.00 0.00 3.96
1410 1824 2.352034 GCTCACTCAACATCTCTGCATG 59.648 50.000 0.00 0.00 0.00 4.06
1411 1825 3.597255 CTCACTCAACATCTCTGCATGT 58.403 45.455 0.00 0.00 38.74 3.21
1413 1827 3.999001 TCACTCAACATCTCTGCATGTTC 59.001 43.478 0.42 0.00 43.75 3.18
1414 1828 3.126514 CACTCAACATCTCTGCATGTTCC 59.873 47.826 0.42 0.00 43.75 3.62
1417 1831 3.262660 TCAACATCTCTGCATGTTCCTCT 59.737 43.478 0.42 0.00 43.75 3.69
1418 1832 3.996921 ACATCTCTGCATGTTCCTCTT 57.003 42.857 0.00 0.00 32.81 2.85
1450 1864 5.920840 ACCGATATCTACATGTTCATGTTCG 59.079 40.000 20.87 20.60 36.08 3.95
1456 1870 6.852858 TCTACATGTTCATGTTCGTTTTGA 57.147 33.333 20.87 2.95 36.08 2.69
1565 1996 1.202891 AGGAACTGCAAGGTACCAACC 60.203 52.381 15.94 1.53 31.29 3.77
1566 1997 4.769075 AGGAACTGCAAGGTACCAACCG 62.769 54.545 15.94 1.74 31.29 4.44
1598 2029 2.030451 TCTTCCGATGATCGATGCTCTG 60.030 50.000 17.52 0.00 43.74 3.35
1603 2034 3.379240 CGATGATCGATGCTCTGTTTCT 58.621 45.455 9.62 0.00 43.74 2.52
1609 2040 2.165234 TCGATGCTCTGTTTCTCTCCAG 59.835 50.000 0.00 0.00 0.00 3.86
1767 2201 6.652205 AAGATTTACCCCAAGAATCAGGTA 57.348 37.500 0.00 0.00 33.34 3.08
1787 3853 8.367911 TCAGGTATGGCTAGACTAAAATACATG 58.632 37.037 10.62 10.62 35.01 3.21
1810 3876 5.105106 TGGCGTCTCCTATTTAGATTGTCAA 60.105 40.000 0.00 0.00 35.26 3.18
1811 3877 5.815740 GGCGTCTCCTATTTAGATTGTCAAA 59.184 40.000 0.00 0.00 0.00 2.69
1812 3878 6.018669 GGCGTCTCCTATTTAGATTGTCAAAG 60.019 42.308 0.00 0.00 0.00 2.77
1813 3879 6.535508 GCGTCTCCTATTTAGATTGTCAAAGT 59.464 38.462 0.00 0.00 0.00 2.66
1815 3881 9.021863 CGTCTCCTATTTAGATTGTCAAAGTAC 57.978 37.037 0.00 0.00 0.00 2.73
1818 3884 9.535878 CTCCTATTTAGATTGTCAAAGTACTCC 57.464 37.037 0.00 0.00 0.00 3.85
1819 3885 9.268282 TCCTATTTAGATTGTCAAAGTACTCCT 57.732 33.333 0.00 0.00 0.00 3.69
1826 3892 8.779354 AGATTGTCAAAGTACTCCTAACATTC 57.221 34.615 0.00 5.39 0.00 2.67
1827 3893 8.598041 AGATTGTCAAAGTACTCCTAACATTCT 58.402 33.333 0.00 7.36 0.00 2.40
1828 3894 9.220767 GATTGTCAAAGTACTCCTAACATTCTT 57.779 33.333 0.00 0.00 0.00 2.52
1855 3921 6.780706 TCGAGTGTTAAGATGTTCCTTTTC 57.219 37.500 0.00 0.00 0.00 2.29
1898 3966 5.215160 CCTAGAGCACAACAACAAAATGAC 58.785 41.667 0.00 0.00 0.00 3.06
1908 3976 5.041191 ACAACAAAATGACAGGAGAGAGT 57.959 39.130 0.00 0.00 0.00 3.24
1926 3994 7.772757 GGAGAGAGTTTGGATTTGATCAAGTAT 59.227 37.037 8.41 0.00 0.00 2.12
2023 4091 1.750778 CACTACCCATTGGTCATTGGC 59.249 52.381 1.20 0.00 43.06 4.52
2024 4092 1.357420 ACTACCCATTGGTCATTGGCA 59.643 47.619 1.20 0.00 43.06 4.92
2039 4107 5.357878 GTCATTGGCAACCTCATGATTCTTA 59.642 40.000 0.00 0.00 30.60 2.10
2189 4261 2.999355 CTGGCAAGAGCTAAGAACACTC 59.001 50.000 0.00 0.00 41.70 3.51
2192 4264 2.664085 GCAAGAGCTAAGAACACTCGTC 59.336 50.000 0.00 0.00 37.91 4.20
2204 4276 4.209288 AGAACACTCGTCGAAATTCAACTG 59.791 41.667 12.65 0.00 0.00 3.16
2242 4314 6.588348 TGCTGATTACTAACATGTGATTCG 57.412 37.500 0.00 0.00 0.00 3.34
2280 4352 4.655963 AGCTGCTCTGGACAAAATAGAAA 58.344 39.130 0.00 0.00 0.00 2.52
2281 4353 4.457257 AGCTGCTCTGGACAAAATAGAAAC 59.543 41.667 0.00 0.00 0.00 2.78
2346 4418 4.887071 AGTTCAGTCTGGTAATTTTGCACA 59.113 37.500 0.00 0.00 0.00 4.57
2347 4419 5.009010 AGTTCAGTCTGGTAATTTTGCACAG 59.991 40.000 0.00 0.00 0.00 3.66
2351 4423 3.826524 TCTGGTAATTTTGCACAGACCA 58.173 40.909 0.00 0.00 33.62 4.02
2352 4424 4.406456 TCTGGTAATTTTGCACAGACCAT 58.594 39.130 5.80 0.00 36.42 3.55
2354 4426 3.509575 TGGTAATTTTGCACAGACCATCC 59.490 43.478 0.00 0.00 32.10 3.51
2356 4428 4.142381 GGTAATTTTGCACAGACCATCCTC 60.142 45.833 0.00 0.00 0.00 3.71
2468 5742 8.421249 TTGTTGATGGATTCCAAGTATTCTTT 57.579 30.769 9.98 0.00 36.95 2.52
2495 5769 6.020121 CCAACATAAAGAACTACGATACCACG 60.020 42.308 0.00 0.00 39.31 4.94
2518 5792 1.211457 AGGAAGGCCTAACATGCAGAG 59.789 52.381 5.16 0.00 44.74 3.35
2561 5835 3.921021 CACGACATCTTTCAGGAGTGTAC 59.079 47.826 0.00 0.00 0.00 2.90
2569 5843 3.823281 TTCAGGAGTGTACCGTTTTGA 57.177 42.857 0.00 0.00 34.73 2.69
2570 5844 3.102052 TCAGGAGTGTACCGTTTTGAC 57.898 47.619 0.00 0.00 34.73 3.18
2586 5934 3.452755 TTGACGCACATAGGGATGTAG 57.547 47.619 0.00 0.00 44.82 2.74
2589 5937 2.623889 GACGCACATAGGGATGTAGTCT 59.376 50.000 13.85 0.00 44.82 3.24
2684 6033 8.252417 AGTGAATAATGCATGTGCTAAAAATCA 58.748 29.630 0.00 2.06 42.66 2.57
2686 6035 8.871862 TGAATAATGCATGTGCTAAAAATCAAC 58.128 29.630 0.00 0.00 42.66 3.18
2687 6036 8.774890 AATAATGCATGTGCTAAAAATCAACA 57.225 26.923 0.00 0.00 42.66 3.33
2693 6042 8.068977 TGCATGTGCTAAAAATCAACAATTTTC 58.931 29.630 6.55 0.00 42.71 2.29
2729 6078 6.583806 GGTAGCTCAAATCTTTGACACATTTG 59.416 38.462 1.28 7.12 41.88 2.32
2764 6116 3.992260 ACATGTAGAGTACATCTCCGC 57.008 47.619 0.00 0.00 45.83 5.54
2856 6209 3.897505 GCCCCAGCTCCATATGTAATTTT 59.102 43.478 1.24 0.00 35.50 1.82
2866 6219 7.113965 GCTCCATATGTAATTTTCGCATCTTTG 59.886 37.037 1.24 0.00 0.00 2.77
2882 6235 6.584184 CGCATCTTTGAGTGTCTATGTATAGG 59.416 42.308 0.00 0.00 0.00 2.57
2900 6253 8.824756 TGTATAGGAACTTACTCATGAGAACT 57.175 34.615 29.27 15.86 41.75 3.01
2926 6279 6.152661 GGAAACATGTGTAGGAAATGAATGGA 59.847 38.462 0.00 0.00 0.00 3.41
3026 6379 6.628187 CGTTCTAGCAACGATTAACTATGTG 58.372 40.000 17.21 0.00 45.64 3.21
3071 6424 0.613260 ACGCCTGAAATACCAGCTCA 59.387 50.000 0.00 0.00 32.97 4.26
3146 6499 9.932207 TGCTTTTACTAGTATGTAGTTTTAGCA 57.068 29.630 2.79 6.01 34.04 3.49
3170 6523 4.883585 TGGCACACCAAATAGAGATCATTC 59.116 41.667 0.00 0.00 45.37 2.67
3186 6539 9.311916 AGAGATCATTCGACTCTTATTTGAAAG 57.688 33.333 0.00 0.00 37.69 2.62
3200 6553 9.933723 TCTTATTTGAAAGTACTTACTACACCC 57.066 33.333 8.92 0.00 34.99 4.61
3201 6554 9.939802 CTTATTTGAAAGTACTTACTACACCCT 57.060 33.333 8.92 0.00 34.99 4.34
3218 6571 8.365647 ACTACACCCTCCGTTCATTAATATAAG 58.634 37.037 0.00 0.00 0.00 1.73
3268 6621 9.132521 CTGCCAAAACATCTTACATTTAAGAAG 57.867 33.333 5.46 4.15 45.52 2.85
3335 6689 3.486383 TGGAAGTCTTGCCTTAACCAAG 58.514 45.455 1.19 5.23 40.72 3.61
3396 6750 2.624838 CTGCTCATCCACCAGTGTTTTT 59.375 45.455 0.00 0.00 0.00 1.94
3480 6835 2.954318 CCCCGATCTCGTTAAGGAAGTA 59.046 50.000 0.00 0.00 37.74 2.24
3481 6836 3.004524 CCCCGATCTCGTTAAGGAAGTAG 59.995 52.174 0.00 0.00 37.74 2.57
3497 6852 6.422333 AGGAAGTAGTTGTAGTAGTACTCCC 58.578 44.000 5.96 0.00 34.07 4.30
3514 6869 0.104304 CCCTCCGTCCAAGTAATCCG 59.896 60.000 0.00 0.00 0.00 4.18
3518 6873 0.756903 CCGTCCAAGTAATCCGGGAT 59.243 55.000 2.97 2.97 35.11 3.85
3535 6890 5.247564 TCCGGGATGGAGGTAATATTACTTG 59.752 44.000 21.86 4.34 43.74 3.16
3574 6940 4.085357 TGGTGACATCTGCTGTTTTACT 57.915 40.909 0.00 0.00 38.54 2.24
3575 6941 3.814842 TGGTGACATCTGCTGTTTTACTG 59.185 43.478 0.00 0.00 38.54 2.74
3576 6942 4.065088 GGTGACATCTGCTGTTTTACTGA 58.935 43.478 0.00 0.00 38.54 3.41
3577 6943 4.697352 GGTGACATCTGCTGTTTTACTGAT 59.303 41.667 0.00 0.00 38.54 2.90
3578 6944 5.391310 GGTGACATCTGCTGTTTTACTGATG 60.391 44.000 7.92 7.92 43.74 3.07
3579 6945 4.696877 TGACATCTGCTGTTTTACTGATGG 59.303 41.667 12.48 0.00 42.94 3.51
3580 6946 4.910195 ACATCTGCTGTTTTACTGATGGA 58.090 39.130 12.48 0.00 42.94 3.41
3581 6947 4.940046 ACATCTGCTGTTTTACTGATGGAG 59.060 41.667 12.48 0.00 42.94 3.86
3582 6948 4.623932 TCTGCTGTTTTACTGATGGAGT 57.376 40.909 0.00 0.00 38.88 3.85
3583 6949 4.318332 TCTGCTGTTTTACTGATGGAGTG 58.682 43.478 0.00 0.00 35.96 3.51
3584 6950 2.813754 TGCTGTTTTACTGATGGAGTGC 59.186 45.455 0.00 0.00 35.96 4.40
3585 6951 3.077359 GCTGTTTTACTGATGGAGTGCT 58.923 45.455 0.00 0.00 35.96 4.40
3586 6952 3.120060 GCTGTTTTACTGATGGAGTGCTG 60.120 47.826 0.00 0.00 35.96 4.41
3587 6953 4.318332 CTGTTTTACTGATGGAGTGCTGA 58.682 43.478 0.00 0.00 35.96 4.26
3588 6954 4.910195 TGTTTTACTGATGGAGTGCTGAT 58.090 39.130 0.00 0.00 35.96 2.90
3589 6955 4.696877 TGTTTTACTGATGGAGTGCTGATG 59.303 41.667 0.00 0.00 35.96 3.07
3590 6956 4.558226 TTTACTGATGGAGTGCTGATGT 57.442 40.909 0.00 0.00 35.96 3.06
3591 6957 4.558226 TTACTGATGGAGTGCTGATGTT 57.442 40.909 0.00 0.00 35.96 2.71
3592 6958 3.430042 ACTGATGGAGTGCTGATGTTT 57.570 42.857 0.00 0.00 31.75 2.83
3593 6959 3.759581 ACTGATGGAGTGCTGATGTTTT 58.240 40.909 0.00 0.00 31.75 2.43
3635 7001 1.839994 TCTCTTGGATTTGGATCGGCT 59.160 47.619 0.00 0.00 32.84 5.52
3653 7088 2.548904 GGCTGATGACTGATGAAGCATC 59.451 50.000 0.00 0.00 40.88 3.91
3709 10521 9.793245 GCTATGTACTATAACGCAAATAAGTTG 57.207 33.333 0.00 0.00 40.50 3.16
3735 10547 7.571059 GCATCGAATAAACAACAAATTGCCTTT 60.571 33.333 0.00 0.00 39.66 3.11
3738 10550 5.687770 ATAAACAACAAATTGCCTTTGCC 57.312 34.783 8.35 0.00 46.81 4.52
3743 10555 0.397564 CAAATTGCCTTTGCCTGGGT 59.602 50.000 0.00 0.00 37.98 4.51
3752 10567 1.684386 TTTGCCTGGGTGCCAAGTTG 61.684 55.000 0.00 0.00 30.80 3.16
3762 10577 0.682532 TGCCAAGTTGTTGCCAGTCA 60.683 50.000 1.45 0.00 31.64 3.41
3783 10598 3.630769 CACAGACGCTCCTACTATTACCA 59.369 47.826 0.00 0.00 0.00 3.25
3786 10601 4.023878 CAGACGCTCCTACTATTACCAGTC 60.024 50.000 0.00 0.00 0.00 3.51
3834 10649 7.492524 TGTACTAATACTGAGAGCCAATGAAG 58.507 38.462 0.00 0.00 32.00 3.02
3852 10675 9.158233 CCAATGAAGAACATATTTCTTTGCATT 57.842 29.630 11.63 12.90 38.73 3.56
3909 10732 2.744202 CGTTAATGCCCAGGATATCAGC 59.256 50.000 4.83 2.44 0.00 4.26
3927 10750 5.378230 TCAGCATCTAGAACCAAATGGAT 57.622 39.130 6.42 0.00 38.94 3.41
3932 10755 5.564259 GCATCTAGAACCAAATGGATGATGC 60.564 44.000 20.79 20.79 39.86 3.91
3949 10772 6.205270 GGATGATGCAACAACCTCAAAATTTT 59.795 34.615 14.94 0.00 31.45 1.82
3982 10805 7.359933 CCAACAATGCGTGTATTTTTAAGCAAT 60.360 33.333 0.00 0.00 40.60 3.56
4164 10991 0.951558 AAACCTGCAACCTAAGCACG 59.048 50.000 0.00 0.00 37.02 5.34
4244 11075 7.373493 CCATAATAAATCAGGTTGAATGGAGC 58.627 38.462 0.00 0.00 34.57 4.70
4272 11103 1.066136 CTCTATCACATGCGCCGATG 58.934 55.000 4.18 5.40 0.00 3.84
4328 11160 5.046376 TGACACACACATGATAAGACCTGAT 60.046 40.000 0.00 0.00 0.00 2.90
4533 11366 0.541863 ATCCTGGCTAACAAGGACCG 59.458 55.000 0.00 0.00 31.94 4.79
4557 11390 4.755123 CCGCCCAAAAGTATTACCTGATAG 59.245 45.833 0.00 0.00 0.00 2.08
4576 11409 5.882557 TGATAGAGTTTTCAAATGGAGGAGC 59.117 40.000 0.00 0.00 0.00 4.70
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
10 11 6.091437 CCGAGATATAAGGAAACATCGTACC 58.909 44.000 0.00 0.00 0.00 3.34
18 19 3.927142 CCGATGCCGAGATATAAGGAAAC 59.073 47.826 0.00 0.00 38.22 2.78
35 36 3.517602 TGGAAGATAACACGAACCGATG 58.482 45.455 0.00 0.00 0.00 3.84
36 37 3.880047 TGGAAGATAACACGAACCGAT 57.120 42.857 0.00 0.00 0.00 4.18
51 52 7.248437 GTGTAAGTTTTTATCGGGATTGGAAG 58.752 38.462 0.00 0.00 0.00 3.46
69 70 9.659830 CTGAAAAGTTAAAATTAGCGTGTAAGT 57.340 29.630 0.00 0.00 0.00 2.24
232 233 8.822805 ACCCAGTTTGTCTGTTTATTCTCTATA 58.177 33.333 0.00 0.00 42.19 1.31
234 235 7.016268 AGACCCAGTTTGTCTGTTTATTCTCTA 59.984 37.037 0.00 0.00 41.40 2.43
236 237 5.998363 AGACCCAGTTTGTCTGTTTATTCTC 59.002 40.000 0.00 0.00 41.40 2.87
237 238 5.941788 AGACCCAGTTTGTCTGTTTATTCT 58.058 37.500 0.00 0.00 41.40 2.40
238 239 6.635030 AAGACCCAGTTTGTCTGTTTATTC 57.365 37.500 0.00 0.00 42.10 1.75
241 242 7.057894 ACAATAAGACCCAGTTTGTCTGTTTA 58.942 34.615 0.00 0.00 42.10 2.01
243 244 5.445964 ACAATAAGACCCAGTTTGTCTGTT 58.554 37.500 0.00 0.00 42.10 3.16
273 278 9.261180 GAATGATCATCCTTTACGAGACAATAA 57.739 33.333 9.06 0.00 0.00 1.40
291 296 8.274259 GCATTCAGCACAACTCAGAATGATCA 62.274 42.308 15.30 0.00 44.68 2.92
354 371 7.390718 GTGTGGACAACTAAAATTGATAGGAGT 59.609 37.037 4.18 2.32 33.57 3.85
438 455 2.615447 AGCGAACGCATGAATGATGAAT 59.385 40.909 20.66 0.00 44.88 2.57
439 456 2.009051 AGCGAACGCATGAATGATGAA 58.991 42.857 20.66 0.00 44.88 2.57
440 457 1.594397 GAGCGAACGCATGAATGATGA 59.406 47.619 20.66 0.00 44.88 2.92
441 458 1.655600 CGAGCGAACGCATGAATGATG 60.656 52.381 20.66 0.00 44.88 3.07
442 459 0.578683 CGAGCGAACGCATGAATGAT 59.421 50.000 20.66 0.00 44.88 2.45
443 460 1.420641 CCGAGCGAACGCATGAATGA 61.421 55.000 20.66 0.00 44.88 2.57
444 461 1.011904 CCGAGCGAACGCATGAATG 60.012 57.895 20.66 4.16 44.88 2.67
507 524 1.003839 GGACAGGTTCGTGGCATCA 60.004 57.895 0.00 0.00 0.00 3.07
516 533 4.038162 ACATAGAGCGATTAGGACAGGTTC 59.962 45.833 0.00 0.00 0.00 3.62
544 561 2.606378 ACTGGGAAGAAACTACGAGGT 58.394 47.619 0.00 0.00 0.00 3.85
562 579 5.104900 ACATTTCAATTAGGAGCCTCGTACT 60.105 40.000 0.00 0.00 0.00 2.73
571 621 7.277098 CCAAGCATTTCACATTTCAATTAGGAG 59.723 37.037 0.00 0.00 0.00 3.69
581 631 2.224018 ACACGCCAAGCATTTCACATTT 60.224 40.909 0.00 0.00 0.00 2.32
582 632 1.340889 ACACGCCAAGCATTTCACATT 59.659 42.857 0.00 0.00 0.00 2.71
583 633 0.961019 ACACGCCAAGCATTTCACAT 59.039 45.000 0.00 0.00 0.00 3.21
584 634 1.265635 GTACACGCCAAGCATTTCACA 59.734 47.619 0.00 0.00 0.00 3.58
585 635 1.724654 CGTACACGCCAAGCATTTCAC 60.725 52.381 0.00 0.00 0.00 3.18
586 636 0.515127 CGTACACGCCAAGCATTTCA 59.485 50.000 0.00 0.00 0.00 2.69
587 637 0.515564 ACGTACACGCCAAGCATTTC 59.484 50.000 0.85 0.00 44.43 2.17
588 638 0.948678 AACGTACACGCCAAGCATTT 59.051 45.000 0.85 0.00 44.43 2.32
589 639 0.515564 GAACGTACACGCCAAGCATT 59.484 50.000 0.85 0.00 44.43 3.56
590 640 0.601576 TGAACGTACACGCCAAGCAT 60.602 50.000 0.85 0.00 44.43 3.79
598 648 0.701303 GAGCTCGTTGAACGTACACG 59.299 55.000 17.86 7.56 43.14 4.49
601 651 1.337821 CTGGAGCTCGTTGAACGTAC 58.662 55.000 17.86 10.75 43.14 3.67
605 655 0.390472 CTCCCTGGAGCTCGTTGAAC 60.390 60.000 7.83 0.00 35.31 3.18
628 678 2.377628 TTTGGTCCGCAGCTCTTCGT 62.378 55.000 0.00 0.00 0.00 3.85
630 680 0.603975 ACTTTGGTCCGCAGCTCTTC 60.604 55.000 0.00 0.00 0.00 2.87
638 688 1.228657 GGACAGTGACTTTGGTCCGC 61.229 60.000 5.03 0.00 40.29 5.54
700 754 3.800929 TTAGTCGGCATCGTACTATCG 57.199 47.619 0.00 0.00 37.69 2.92
701 755 5.458891 ACAATTAGTCGGCATCGTACTATC 58.541 41.667 0.00 0.00 37.69 2.08
702 756 5.449107 ACAATTAGTCGGCATCGTACTAT 57.551 39.130 0.00 0.00 37.69 2.12
722 820 2.434185 GCACATTCGCCGGAGACA 60.434 61.111 7.66 0.00 0.00 3.41
733 831 2.771089 CCACGATATAGGCTGCACATT 58.229 47.619 0.50 0.00 0.00 2.71
757 855 4.101790 GCCATGTCACGGCGGTTG 62.102 66.667 13.24 0.45 40.35 3.77
855 968 6.073711 GGAGAAGTACGAAGAAAACTTTGAGG 60.074 42.308 0.00 0.00 33.72 3.86
911 1047 5.050490 AGCGTATATAAAGCACTTCCACTG 58.950 41.667 12.29 0.00 0.00 3.66
914 1050 6.575267 TGTAAGCGTATATAAAGCACTTCCA 58.425 36.000 12.29 1.87 0.00 3.53
968 1104 1.678627 GCTAGTGATCAAGGAGCTCGA 59.321 52.381 7.83 0.00 0.00 4.04
1095 1238 1.149964 TCAGCGAGCAAGCGATCATG 61.150 55.000 0.00 0.00 43.00 3.07
1178 1592 2.362369 TAGAGAGGTGGCTGCTGGC 61.362 63.158 10.40 10.40 40.90 4.85
1214 1628 1.677052 GGAGGGAGTAGTAAGCAGACG 59.323 57.143 0.00 0.00 0.00 4.18
1228 1642 3.581332 ACAAGTAATTCTGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
1229 1643 3.933332 GACAAGTAATTCTGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
1230 1644 3.612860 CGACAAGTAATTCTGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
1231 1645 3.060895 GCGACAAGTAATTCTGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
1232 1646 2.991190 GCGACAAGTAATTCTGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
1233 1647 2.734606 TGCGACAAGTAATTCTGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
1234 1648 3.673338 TCTGCGACAAGTAATTCTGAACG 59.327 43.478 0.00 0.00 0.00 3.95
1235 1649 5.591643 TTCTGCGACAAGTAATTCTGAAC 57.408 39.130 0.00 0.00 0.00 3.18
1236 1650 6.801539 ATTTCTGCGACAAGTAATTCTGAA 57.198 33.333 0.00 0.00 0.00 3.02
1237 1651 7.320399 TCTATTTCTGCGACAAGTAATTCTGA 58.680 34.615 0.00 0.00 0.00 3.27
1238 1652 7.525688 TCTATTTCTGCGACAAGTAATTCTG 57.474 36.000 0.00 0.00 0.00 3.02
1239 1653 7.766278 ACATCTATTTCTGCGACAAGTAATTCT 59.234 33.333 0.00 0.00 0.00 2.40
1240 1654 7.910304 ACATCTATTTCTGCGACAAGTAATTC 58.090 34.615 0.00 0.00 0.00 2.17
1241 1655 7.849804 ACATCTATTTCTGCGACAAGTAATT 57.150 32.000 0.00 0.00 0.00 1.40
1242 1656 9.197694 GATACATCTATTTCTGCGACAAGTAAT 57.802 33.333 0.00 0.00 0.00 1.89
1243 1657 8.414003 AGATACATCTATTTCTGCGACAAGTAA 58.586 33.333 0.00 0.00 34.85 2.24
1244 1658 7.941919 AGATACATCTATTTCTGCGACAAGTA 58.058 34.615 0.00 0.00 34.85 2.24
1245 1659 6.810911 AGATACATCTATTTCTGCGACAAGT 58.189 36.000 0.00 0.00 34.85 3.16
1246 1660 8.293157 TCTAGATACATCTATTTCTGCGACAAG 58.707 37.037 0.00 0.00 38.60 3.16
1247 1661 8.076781 GTCTAGATACATCTATTTCTGCGACAA 58.923 37.037 0.00 0.00 38.60 3.18
1248 1662 7.571428 CGTCTAGATACATCTATTTCTGCGACA 60.571 40.741 0.00 0.00 38.60 4.35
1249 1663 6.739100 CGTCTAGATACATCTATTTCTGCGAC 59.261 42.308 0.00 2.21 38.60 5.19
1250 1664 6.427242 ACGTCTAGATACATCTATTTCTGCGA 59.573 38.462 0.00 0.00 38.60 5.10
1251 1665 6.604012 ACGTCTAGATACATCTATTTCTGCG 58.396 40.000 0.00 0.00 38.60 5.18
1278 1692 9.893634 TCGGAAATGGATGTATCTAAAACTAAA 57.106 29.630 0.00 0.00 0.00 1.85
1279 1693 9.542462 CTCGGAAATGGATGTATCTAAAACTAA 57.458 33.333 0.00 0.00 0.00 2.24
1280 1694 8.920174 TCTCGGAAATGGATGTATCTAAAACTA 58.080 33.333 0.00 0.00 0.00 2.24
1281 1695 7.711339 GTCTCGGAAATGGATGTATCTAAAACT 59.289 37.037 0.00 0.00 0.00 2.66
1282 1696 7.494625 TGTCTCGGAAATGGATGTATCTAAAAC 59.505 37.037 0.00 0.00 0.00 2.43
1283 1697 7.561251 TGTCTCGGAAATGGATGTATCTAAAA 58.439 34.615 0.00 0.00 0.00 1.52
1284 1698 7.119709 TGTCTCGGAAATGGATGTATCTAAA 57.880 36.000 0.00 0.00 0.00 1.85
1285 1699 6.724893 TGTCTCGGAAATGGATGTATCTAA 57.275 37.500 0.00 0.00 0.00 2.10
1286 1700 6.323996 ACTTGTCTCGGAAATGGATGTATCTA 59.676 38.462 0.00 0.00 0.00 1.98
1287 1701 5.129485 ACTTGTCTCGGAAATGGATGTATCT 59.871 40.000 0.00 0.00 0.00 1.98
1288 1702 5.360591 ACTTGTCTCGGAAATGGATGTATC 58.639 41.667 0.00 0.00 0.00 2.24
1289 1703 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
1290 1704 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
1291 1705 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
1292 1706 6.238484 GGAATTACTTGTCTCGGAAATGGATG 60.238 42.308 0.00 0.00 0.00 3.51
1293 1707 5.823045 GGAATTACTTGTCTCGGAAATGGAT 59.177 40.000 0.00 0.00 0.00 3.41
1294 1708 5.183228 GGAATTACTTGTCTCGGAAATGGA 58.817 41.667 0.00 0.00 0.00 3.41
1295 1709 4.034048 CGGAATTACTTGTCTCGGAAATGG 59.966 45.833 0.00 0.00 0.00 3.16
1296 1710 4.868171 TCGGAATTACTTGTCTCGGAAATG 59.132 41.667 0.00 0.00 0.00 2.32
1297 1711 5.080969 TCGGAATTACTTGTCTCGGAAAT 57.919 39.130 0.00 0.00 0.00 2.17
1298 1712 4.524316 TCGGAATTACTTGTCTCGGAAA 57.476 40.909 0.00 0.00 0.00 3.13
1299 1713 4.240096 GTTCGGAATTACTTGTCTCGGAA 58.760 43.478 0.00 0.00 0.00 4.30
1300 1714 3.671433 CGTTCGGAATTACTTGTCTCGGA 60.671 47.826 0.00 0.00 0.00 4.55
1301 1715 2.597305 CGTTCGGAATTACTTGTCTCGG 59.403 50.000 0.00 0.00 0.00 4.63
1302 1716 2.597305 CCGTTCGGAATTACTTGTCTCG 59.403 50.000 5.19 0.00 0.00 4.04
1303 1717 3.841643 TCCGTTCGGAATTACTTGTCTC 58.158 45.455 11.66 0.00 0.00 3.36
1304 1718 3.368116 CCTCCGTTCGGAATTACTTGTCT 60.368 47.826 14.79 0.00 33.41 3.41
1305 1719 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
1306 1720 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
1307 1721 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
1308 1722 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
1309 1723 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
1310 1724 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
1311 1725 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
1312 1726 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
1313 1727 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
1314 1728 1.308069 CGTACTCCCTCCGTTCGGAA 61.308 60.000 14.79 0.04 33.41 4.30
1315 1729 1.746615 CGTACTCCCTCCGTTCGGA 60.747 63.158 13.34 13.34 0.00 4.55
1316 1730 0.744414 TACGTACTCCCTCCGTTCGG 60.744 60.000 4.74 4.74 36.12 4.30
1317 1731 0.375106 GTACGTACTCCCTCCGTTCG 59.625 60.000 18.47 0.00 36.12 3.95
1318 1732 1.743996 AGTACGTACTCCCTCCGTTC 58.256 55.000 22.45 0.00 36.12 3.95
1319 1733 2.237392 AGTAGTACGTACTCCCTCCGTT 59.763 50.000 30.53 7.49 37.41 4.44
1320 1734 1.834263 AGTAGTACGTACTCCCTCCGT 59.166 52.381 30.53 8.23 37.41 4.69
1321 1735 2.611225 AGTAGTACGTACTCCCTCCG 57.389 55.000 30.53 0.00 37.41 4.63
1322 1736 3.181492 GCAAAGTAGTACGTACTCCCTCC 60.181 52.174 30.53 14.52 41.50 4.30
1323 1737 3.693578 AGCAAAGTAGTACGTACTCCCTC 59.306 47.826 30.53 18.48 41.50 4.30
1324 1738 3.694926 AGCAAAGTAGTACGTACTCCCT 58.305 45.455 30.53 23.11 41.50 4.20
1325 1739 4.446994 AAGCAAAGTAGTACGTACTCCC 57.553 45.455 30.53 21.39 41.50 4.30
1326 1740 5.707931 AGAAAGCAAAGTAGTACGTACTCC 58.292 41.667 30.53 20.39 41.50 3.85
1327 1741 7.083230 AGAAGAAAGCAAAGTAGTACGTACTC 58.917 38.462 30.53 20.84 41.50 2.59
1328 1742 6.979465 AGAAGAAAGCAAAGTAGTACGTACT 58.021 36.000 29.62 29.62 44.51 2.73
1329 1743 6.307558 GGAGAAGAAAGCAAAGTAGTACGTAC 59.692 42.308 18.10 18.10 0.00 3.67
1330 1744 6.385033 GGAGAAGAAAGCAAAGTAGTACGTA 58.615 40.000 0.00 0.00 0.00 3.57
1331 1745 5.228665 GGAGAAGAAAGCAAAGTAGTACGT 58.771 41.667 0.00 0.00 0.00 3.57
1332 1746 4.323868 CGGAGAAGAAAGCAAAGTAGTACG 59.676 45.833 0.00 0.00 0.00 3.67
1333 1747 5.467705 TCGGAGAAGAAAGCAAAGTAGTAC 58.532 41.667 0.00 0.00 0.00 2.73
1336 1750 5.467063 AGTTTCGGAGAAGAAAGCAAAGTAG 59.533 40.000 0.00 0.00 45.90 2.57
1374 1788 2.169352 AGTGAGCTTAGGGTGCTACATG 59.831 50.000 0.00 0.00 41.30 3.21
1397 1811 3.996921 AGAGGAACATGCAGAGATGTT 57.003 42.857 3.12 3.12 46.89 2.71
1399 1813 3.181499 GCAAAGAGGAACATGCAGAGATG 60.181 47.826 0.00 0.00 38.63 2.90
1404 1818 0.169672 CCGCAAAGAGGAACATGCAG 59.830 55.000 0.00 0.00 38.69 4.41
1405 1819 1.243342 CCCGCAAAGAGGAACATGCA 61.243 55.000 0.00 0.00 38.69 3.96
1406 1820 1.508088 CCCGCAAAGAGGAACATGC 59.492 57.895 0.00 0.00 35.49 4.06
1407 1821 1.243342 TGCCCGCAAAGAGGAACATG 61.243 55.000 0.00 0.00 0.00 3.21
1408 1822 1.074775 TGCCCGCAAAGAGGAACAT 59.925 52.632 0.00 0.00 0.00 2.71
1409 1823 1.896660 GTGCCCGCAAAGAGGAACA 60.897 57.895 0.00 0.00 0.00 3.18
1410 1824 2.626780 GGTGCCCGCAAAGAGGAAC 61.627 63.158 0.00 0.00 0.00 3.62
1411 1825 2.282180 GGTGCCCGCAAAGAGGAA 60.282 61.111 0.00 0.00 0.00 3.36
1450 1864 6.093219 ACATGAGCACAGAGATATGTCAAAAC 59.907 38.462 0.00 0.00 0.00 2.43
1456 1870 4.161001 TCACACATGAGCACAGAGATATGT 59.839 41.667 0.00 0.00 0.00 2.29
1520 1951 2.322830 CCATGCTCGCTGCGCATAT 61.323 57.895 18.65 7.98 45.65 1.78
1565 1996 0.588737 TCGGAAGATGAGCTCGATCG 59.411 55.000 9.36 9.36 33.31 3.69
1609 2040 5.998363 ACCTAACCAAAGAAGACAACTCATC 59.002 40.000 0.00 0.00 0.00 2.92
1671 2105 1.072505 CTGCAAACCCTGGTACCGT 59.927 57.895 7.57 0.00 0.00 4.83
1743 2177 5.903923 ACCTGATTCTTGGGGTAAATCTTT 58.096 37.500 0.00 0.00 31.99 2.52
1767 2201 4.997395 CGCCATGTATTTTAGTCTAGCCAT 59.003 41.667 0.00 0.00 0.00 4.40
1787 3853 4.945246 TGACAATCTAAATAGGAGACGCC 58.055 43.478 0.00 0.00 0.00 5.68
1810 3876 9.804758 CTCGATAAAAGAATGTTAGGAGTACTT 57.195 33.333 0.00 0.00 0.00 2.24
1811 3877 8.968969 ACTCGATAAAAGAATGTTAGGAGTACT 58.031 33.333 0.00 0.00 35.19 2.73
1812 3878 9.021863 CACTCGATAAAAGAATGTTAGGAGTAC 57.978 37.037 0.00 0.00 34.92 2.73
1813 3879 8.746530 ACACTCGATAAAAGAATGTTAGGAGTA 58.253 33.333 0.00 0.00 34.92 2.59
1815 3881 8.480643 AACACTCGATAAAAGAATGTTAGGAG 57.519 34.615 0.00 0.00 31.24 3.69
1816 3882 9.932207 TTAACACTCGATAAAAGAATGTTAGGA 57.068 29.630 1.61 0.00 31.24 2.94
1821 3887 9.436957 ACATCTTAACACTCGATAAAAGAATGT 57.563 29.630 0.00 0.00 28.55 2.71
1825 3891 8.311836 AGGAACATCTTAACACTCGATAAAAGA 58.688 33.333 0.00 0.00 0.00 2.52
1826 3892 8.480643 AGGAACATCTTAACACTCGATAAAAG 57.519 34.615 0.00 0.00 0.00 2.27
1827 3893 8.842358 AAGGAACATCTTAACACTCGATAAAA 57.158 30.769 0.00 0.00 0.00 1.52
1828 3894 8.842358 AAAGGAACATCTTAACACTCGATAAA 57.158 30.769 0.00 0.00 0.00 1.40
1898 3966 5.494724 TGATCAAATCCAAACTCTCTCCTG 58.505 41.667 0.00 0.00 0.00 3.86
1926 3994 4.127171 GGCCTTCGAAATTGCTGTCTATA 58.873 43.478 12.09 0.00 0.00 1.31
2054 4126 4.657814 TGCTTTTCAGGATCCTAAGGTT 57.342 40.909 15.67 0.00 0.00 3.50
2233 4305 2.183478 TGACCAGCAACGAATCACAT 57.817 45.000 0.00 0.00 0.00 3.21
2242 4314 2.159462 GCAGCTTCTATTGACCAGCAAC 60.159 50.000 4.11 0.00 39.78 4.17
2280 4352 6.296030 CCATCATCAAATTTTGAAAGGGAGGT 60.296 38.462 15.34 0.00 43.95 3.85
2281 4353 6.110707 CCATCATCAAATTTTGAAAGGGAGG 58.889 40.000 15.34 11.65 43.95 4.30
2349 4421 3.441101 TGATATAAGGGACCGAGGATGG 58.559 50.000 0.00 0.00 0.00 3.51
2350 4422 3.118956 GCTGATATAAGGGACCGAGGATG 60.119 52.174 0.00 0.00 0.00 3.51
2351 4423 3.100671 GCTGATATAAGGGACCGAGGAT 58.899 50.000 0.00 0.00 0.00 3.24
2352 4424 2.110188 AGCTGATATAAGGGACCGAGGA 59.890 50.000 0.00 0.00 0.00 3.71
2354 4426 4.590918 TCTAGCTGATATAAGGGACCGAG 58.409 47.826 0.00 0.00 0.00 4.63
2356 4428 5.923733 ATTCTAGCTGATATAAGGGACCG 57.076 43.478 0.00 0.00 0.00 4.79
2468 5742 5.813672 GGTATCGTAGTTCTTTATGTTGGCA 59.186 40.000 0.00 0.00 0.00 4.92
2518 5792 5.446473 CGTGTTCTTGCTACCTTGATGAATC 60.446 44.000 0.00 0.00 0.00 2.52
2569 5843 2.667470 AGACTACATCCCTATGTGCGT 58.333 47.619 1.34 0.00 45.99 5.24
2570 5844 3.735237 AAGACTACATCCCTATGTGCG 57.265 47.619 1.34 0.00 45.99 5.34
2655 6003 9.734620 TTTTTAGCACATGCATTATTCACTATC 57.265 29.630 6.64 0.00 45.16 2.08
2703 6052 4.713553 TGTGTCAAAGATTTGAGCTACCA 58.286 39.130 8.22 0.61 46.80 3.25
2704 6053 5.886960 ATGTGTCAAAGATTTGAGCTACC 57.113 39.130 8.22 0.00 46.80 3.18
2720 6069 9.838975 TGTTTGTACATATTCATCAAATGTGTC 57.161 29.630 0.00 0.00 43.78 3.67
2764 6116 7.581476 AGTTTCAGGAAAAATACACATGTACG 58.419 34.615 0.00 0.00 30.57 3.67
2838 6191 5.422666 TGCGAAAATTACATATGGAGCTG 57.577 39.130 7.80 0.00 0.00 4.24
2846 6199 8.039603 ACACTCAAAGATGCGAAAATTACATA 57.960 30.769 0.00 0.00 0.00 2.29
2850 6203 6.801539 AGACACTCAAAGATGCGAAAATTA 57.198 33.333 0.00 0.00 0.00 1.40
2856 6209 4.456280 ACATAGACACTCAAAGATGCGA 57.544 40.909 0.00 0.00 0.00 5.10
2866 6219 9.339850 TGAGTAAGTTCCTATACATAGACACTC 57.660 37.037 0.00 0.00 32.05 3.51
2882 6235 6.706270 TGTTTCCAGTTCTCATGAGTAAGTTC 59.294 38.462 21.92 1.35 0.00 3.01
2900 6253 6.071447 CCATTCATTTCCTACACATGTTTCCA 60.071 38.462 0.00 0.00 0.00 3.53
3026 6379 9.433153 TGAGATCATCATCTTTATAGCATTGAC 57.567 33.333 0.00 0.00 39.71 3.18
3071 6424 4.353777 TCCTTAGCTTGTATGTCTGGACT 58.646 43.478 0.00 0.00 0.00 3.85
3146 6499 4.508551 TGATCTCTATTTGGTGTGCCAT 57.491 40.909 0.00 0.00 45.56 4.40
3186 6539 3.758554 TGAACGGAGGGTGTAGTAAGTAC 59.241 47.826 0.00 0.00 0.00 2.73
3198 6551 8.848474 AACATCTTATATTAATGAACGGAGGG 57.152 34.615 0.00 0.00 0.00 4.30
3240 6593 8.637986 TCTTAAATGTAAGATGTTTTGGCAGTT 58.362 29.630 0.84 0.00 40.68 3.16
3308 6662 5.475564 GGTTAAGGCAAGACTTCCATAAACA 59.524 40.000 0.00 0.00 32.02 2.83
3315 6669 3.487372 ACTTGGTTAAGGCAAGACTTCC 58.513 45.455 0.00 0.00 38.26 3.46
3316 6670 6.262496 ACTTTACTTGGTTAAGGCAAGACTTC 59.738 38.462 0.00 0.00 38.26 3.01
3458 6813 0.462789 TTCCTTAACGAGATCGGGGC 59.537 55.000 7.22 0.00 44.95 5.80
3480 6835 3.265479 ACGGAGGGAGTACTACTACAACT 59.735 47.826 4.77 0.00 27.88 3.16
3481 6836 3.615155 ACGGAGGGAGTACTACTACAAC 58.385 50.000 4.77 0.00 27.88 3.32
3514 6869 5.876357 TGCAAGTAATATTACCTCCATCCC 58.124 41.667 19.74 3.74 34.19 3.85
3518 6873 5.665812 AGTCCTGCAAGTAATATTACCTCCA 59.334 40.000 19.74 13.35 34.19 3.86
3552 6909 4.456911 CAGTAAAACAGCAGATGTCACCAT 59.543 41.667 0.00 0.00 43.00 3.55
3572 6938 3.430042 AAACATCAGCACTCCATCAGT 57.570 42.857 0.00 0.00 34.67 3.41
3573 6939 4.778534 AAAAACATCAGCACTCCATCAG 57.221 40.909 0.00 0.00 0.00 2.90
3574 6940 4.154015 CGTAAAAACATCAGCACTCCATCA 59.846 41.667 0.00 0.00 0.00 3.07
3575 6941 4.154195 ACGTAAAAACATCAGCACTCCATC 59.846 41.667 0.00 0.00 0.00 3.51
3576 6942 4.072131 ACGTAAAAACATCAGCACTCCAT 58.928 39.130 0.00 0.00 0.00 3.41
3577 6943 3.249799 CACGTAAAAACATCAGCACTCCA 59.750 43.478 0.00 0.00 0.00 3.86
3578 6944 3.810373 CACGTAAAAACATCAGCACTCC 58.190 45.455 0.00 0.00 0.00 3.85
3579 6945 3.226347 GCACGTAAAAACATCAGCACTC 58.774 45.455 0.00 0.00 0.00 3.51
3580 6946 2.616376 TGCACGTAAAAACATCAGCACT 59.384 40.909 0.00 0.00 0.00 4.40
3581 6947 2.973224 CTGCACGTAAAAACATCAGCAC 59.027 45.455 0.00 0.00 0.00 4.40
3582 6948 2.875317 TCTGCACGTAAAAACATCAGCA 59.125 40.909 0.00 0.00 0.00 4.41
3583 6949 3.536158 TCTGCACGTAAAAACATCAGC 57.464 42.857 0.00 0.00 0.00 4.26
3584 6950 8.064222 CCTTATATCTGCACGTAAAAACATCAG 58.936 37.037 0.00 0.00 0.00 2.90
3585 6951 7.011950 CCCTTATATCTGCACGTAAAAACATCA 59.988 37.037 0.00 0.00 0.00 3.07
3586 6952 7.012044 ACCCTTATATCTGCACGTAAAAACATC 59.988 37.037 0.00 0.00 0.00 3.06
3587 6953 6.826741 ACCCTTATATCTGCACGTAAAAACAT 59.173 34.615 0.00 0.00 0.00 2.71
3588 6954 6.174760 ACCCTTATATCTGCACGTAAAAACA 58.825 36.000 0.00 0.00 0.00 2.83
3589 6955 6.673154 ACCCTTATATCTGCACGTAAAAAC 57.327 37.500 0.00 0.00 0.00 2.43
3590 6956 7.690952 AAACCCTTATATCTGCACGTAAAAA 57.309 32.000 0.00 0.00 0.00 1.94
3591 6957 7.608761 AGAAAACCCTTATATCTGCACGTAAAA 59.391 33.333 0.00 0.00 0.00 1.52
3592 6958 7.107542 AGAAAACCCTTATATCTGCACGTAAA 58.892 34.615 0.00 0.00 0.00 2.01
3593 6959 6.646267 AGAAAACCCTTATATCTGCACGTAA 58.354 36.000 0.00 0.00 0.00 3.18
3635 7001 2.207590 GCGATGCTTCATCAGTCATCA 58.792 47.619 7.47 0.00 40.54 3.07
3709 10521 5.348451 AGGCAATTTGTTGTTTATTCGATGC 59.652 36.000 0.00 0.00 0.00 3.91
3711 10523 7.795859 CAAAGGCAATTTGTTGTTTATTCGAT 58.204 30.769 5.67 0.00 42.84 3.59
3736 10548 2.133641 AACAACTTGGCACCCAGGC 61.134 57.895 0.00 0.00 44.50 4.85
3738 10550 1.067916 GCAACAACTTGGCACCCAG 59.932 57.895 0.00 0.00 33.81 4.45
3752 10567 1.560860 GAGCGTCTGTGACTGGCAAC 61.561 60.000 0.00 0.00 0.00 4.17
3762 10577 3.884091 CTGGTAATAGTAGGAGCGTCTGT 59.116 47.826 0.00 0.00 0.00 3.41
3811 10626 7.898014 TCTTCATTGGCTCTCAGTATTAGTA 57.102 36.000 0.00 0.00 0.00 1.82
3813 10628 7.044181 TGTTCTTCATTGGCTCTCAGTATTAG 58.956 38.462 0.00 0.00 0.00 1.73
3815 10630 5.809001 TGTTCTTCATTGGCTCTCAGTATT 58.191 37.500 0.00 0.00 0.00 1.89
3816 10631 5.426689 TGTTCTTCATTGGCTCTCAGTAT 57.573 39.130 0.00 0.00 0.00 2.12
3817 10632 4.890158 TGTTCTTCATTGGCTCTCAGTA 57.110 40.909 0.00 0.00 0.00 2.74
3834 10649 9.028185 GGAGAATGAATGCAAAGAAATATGTTC 57.972 33.333 0.00 0.00 0.00 3.18
3852 10675 5.364735 TGCTGAGAAGATATGTGGAGAATGA 59.635 40.000 0.00 0.00 0.00 2.57
3909 10732 5.533528 TGCATCATCCATTTGGTTCTAGATG 59.466 40.000 0.00 0.00 36.34 2.90
3927 10750 5.526846 GGAAAATTTTGAGGTTGTTGCATCA 59.473 36.000 8.47 0.00 0.00 3.07
3932 10755 4.273235 GCTGGGAAAATTTTGAGGTTGTTG 59.727 41.667 8.47 0.00 0.00 3.33
3949 10772 2.676121 CGCATTGTTGGGCTGGGA 60.676 61.111 0.00 0.00 0.00 4.37
3982 10805 0.810426 TGGTGCGTTTGAACTGCGTA 60.810 50.000 6.34 0.00 33.37 4.42
4164 10991 0.108585 TCAACCTGGACCTTGTGCTC 59.891 55.000 0.00 0.00 0.00 4.26
4244 11075 3.665871 CGCATGTGATAGAGATGTGTACG 59.334 47.826 0.00 0.00 32.42 3.67
4272 11103 2.119495 TCAACCTAGGATCTGAAGCCC 58.881 52.381 17.98 0.00 0.00 5.19
4328 11160 5.547465 CCATGCGGGTTATTCAGTAATCTA 58.453 41.667 0.00 0.00 0.00 1.98
4533 11366 1.404035 CAGGTAATACTTTTGGGCGGC 59.596 52.381 0.00 0.00 0.00 6.53
4557 11390 4.520492 TGAAGCTCCTCCATTTGAAAACTC 59.480 41.667 0.00 0.00 0.00 3.01
4576 11409 2.616960 TGTGCGGCACTAACTATGAAG 58.383 47.619 30.81 0.00 35.11 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.