Multiple sequence alignment - TraesCS4A01G103400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G103400 chr4A 100.000 4391 0 0 1 4391 116853654 116849264 0.000000e+00 8109.0
1 TraesCS4A01G103400 chr4D 95.077 3981 120 22 1 3939 348562804 348566750 0.000000e+00 6196.0
2 TraesCS4A01G103400 chr4D 79.588 1798 331 26 1610 3394 348698393 348700167 0.000000e+00 1254.0
3 TraesCS4A01G103400 chr4D 93.301 209 13 1 3937 4144 348566783 348566991 1.530000e-79 307.0
4 TraesCS4A01G103400 chr4D 95.652 46 1 1 4143 4187 8984760 8984805 6.090000e-09 73.1
5 TraesCS4A01G103400 chr4B 96.610 2979 54 17 966 3939 428844924 428847860 0.000000e+00 4898.0
6 TraesCS4A01G103400 chr4B 89.261 717 28 14 151 844 428843932 428844622 0.000000e+00 852.0
7 TraesCS4A01G103400 chr4B 83.963 767 117 3 1508 2271 428899342 428900105 0.000000e+00 730.0
8 TraesCS4A01G103400 chr4B 80.778 926 166 10 2475 3393 428900290 428901210 0.000000e+00 713.0
9 TraesCS4A01G103400 chr4B 94.286 35 2 0 80 114 428843857 428843891 2.000000e-03 54.7
10 TraesCS4A01G103400 chr3D 76.592 1931 378 54 1478 3389 460180041 460181916 0.000000e+00 994.0
11 TraesCS4A01G103400 chr3B 76.474 1934 375 58 1478 3389 609801983 609803858 0.000000e+00 977.0
12 TraesCS4A01G103400 chr3B 78.285 723 139 14 1508 2221 24019141 24018428 2.410000e-122 449.0
13 TraesCS4A01G103400 chr3B 87.500 64 4 4 4184 4245 760212373 760212434 2.190000e-08 71.3
14 TraesCS4A01G103400 chr3A 76.398 1932 380 56 1478 3389 602224983 602226858 0.000000e+00 972.0
15 TraesCS4A01G103400 chr1B 77.125 953 201 16 2449 3392 50205057 50206001 1.800000e-148 536.0
16 TraesCS4A01G103400 chr1A 76.688 948 204 16 2452 3389 31253366 31252426 1.090000e-140 510.0
17 TraesCS4A01G103400 chr5B 79.127 733 143 8 1494 2221 112021360 112020633 8.480000e-137 497.0
18 TraesCS4A01G103400 chr1D 78.611 720 142 10 1490 2203 32738176 32738889 2.390000e-127 466.0
19 TraesCS4A01G103400 chr5A 78.502 721 141 13 1508 2221 96983814 96984527 1.110000e-125 460.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G103400 chr4A 116849264 116853654 4390 True 8109.0 8109 100.000000 1 4391 1 chr4A.!!$R1 4390
1 TraesCS4A01G103400 chr4D 348562804 348566991 4187 False 3251.5 6196 94.189000 1 4144 2 chr4D.!!$F3 4143
2 TraesCS4A01G103400 chr4D 348698393 348700167 1774 False 1254.0 1254 79.588000 1610 3394 1 chr4D.!!$F2 1784
3 TraesCS4A01G103400 chr4B 428843857 428847860 4003 False 1934.9 4898 93.385667 80 3939 3 chr4B.!!$F1 3859
4 TraesCS4A01G103400 chr4B 428899342 428901210 1868 False 721.5 730 82.370500 1508 3393 2 chr4B.!!$F2 1885
5 TraesCS4A01G103400 chr3D 460180041 460181916 1875 False 994.0 994 76.592000 1478 3389 1 chr3D.!!$F1 1911
6 TraesCS4A01G103400 chr3B 609801983 609803858 1875 False 977.0 977 76.474000 1478 3389 1 chr3B.!!$F1 1911
7 TraesCS4A01G103400 chr3B 24018428 24019141 713 True 449.0 449 78.285000 1508 2221 1 chr3B.!!$R1 713
8 TraesCS4A01G103400 chr3A 602224983 602226858 1875 False 972.0 972 76.398000 1478 3389 1 chr3A.!!$F1 1911
9 TraesCS4A01G103400 chr1B 50205057 50206001 944 False 536.0 536 77.125000 2449 3392 1 chr1B.!!$F1 943
10 TraesCS4A01G103400 chr1A 31252426 31253366 940 True 510.0 510 76.688000 2452 3389 1 chr1A.!!$R1 937
11 TraesCS4A01G103400 chr5B 112020633 112021360 727 True 497.0 497 79.127000 1494 2221 1 chr5B.!!$R1 727
12 TraesCS4A01G103400 chr1D 32738176 32738889 713 False 466.0 466 78.611000 1490 2203 1 chr1D.!!$F1 713
13 TraesCS4A01G103400 chr5A 96983814 96984527 713 False 460.0 460 78.502000 1508 2221 1 chr5A.!!$F1 713

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
815 862 0.179062 ATCTGATTGCGTGCTCCTCC 60.179 55.000 0.0 0.0 0.00 4.30 F
836 883 1.003118 CGGGTTGACTCCTCAAATGGA 59.997 52.381 0.0 0.0 38.17 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 2150 1.596934 GAGGAACAGCACGATGGGA 59.403 57.895 0.0 0.0 0.00 4.37 R
3538 3775 1.023513 AGGCAGCAAACATCTCGCTC 61.024 55.000 0.0 0.0 32.48 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 1.589630 CCACACCCGACGAGATGAA 59.410 57.895 0.00 0.00 0.00 2.57
53 55 1.148273 GGCGAGCCCCAATACATGA 59.852 57.895 0.00 0.00 0.00 3.07
85 87 1.466856 TACGACCTGGTCATACGCTT 58.533 50.000 25.42 1.38 32.09 4.68
127 129 1.334960 CCAGATGACACGTGGTTTTGC 60.335 52.381 21.57 3.96 0.00 3.68
134 136 3.119316 TGACACGTGGTTTTGCAAATCTT 60.119 39.130 21.57 0.00 0.00 2.40
145 147 5.982465 TTTGCAAATCTTAAAGCAACCAC 57.018 34.783 8.05 0.00 45.53 4.16
146 148 3.988819 TGCAAATCTTAAAGCAACCACC 58.011 40.909 0.00 0.00 33.48 4.61
147 149 3.244044 TGCAAATCTTAAAGCAACCACCC 60.244 43.478 0.00 0.00 33.48 4.61
149 151 4.559153 CAAATCTTAAAGCAACCACCCAG 58.441 43.478 0.00 0.00 0.00 4.45
214 237 2.545969 TGGTTGCACCTACCAGGAA 58.454 52.632 4.57 0.00 40.65 3.36
245 268 7.118825 CAGTGCTATTGATGGATAATGACGATT 59.881 37.037 0.00 0.00 0.00 3.34
357 387 4.118410 CAGCACTGCAAAACAATAAACCA 58.882 39.130 3.30 0.00 0.00 3.67
389 419 5.942826 TGTGCCACACAAACATATCAGATAA 59.057 36.000 0.00 0.00 41.69 1.75
390 420 6.432472 TGTGCCACACAAACATATCAGATAAA 59.568 34.615 0.00 0.00 41.69 1.40
391 421 7.040132 TGTGCCACACAAACATATCAGATAAAA 60.040 33.333 0.00 0.00 41.69 1.52
392 422 7.812191 GTGCCACACAAACATATCAGATAAAAA 59.188 33.333 0.00 0.00 34.08 1.94
509 542 1.669115 CTGACTCTGGCCAACACCG 60.669 63.158 7.01 0.00 0.00 4.94
547 580 3.876300 GGTGTCAGCCAGCGTTAG 58.124 61.111 0.00 0.00 0.00 2.34
548 581 2.391389 GGTGTCAGCCAGCGTTAGC 61.391 63.158 0.00 0.00 45.58 3.09
591 624 3.589988 CTGAGCTACACTTAACCACCTG 58.410 50.000 0.00 0.00 0.00 4.00
644 677 4.270153 AGAGCCCTCCACCCACCA 62.270 66.667 0.00 0.00 0.00 4.17
806 853 0.379669 GCCAACCTCATCTGATTGCG 59.620 55.000 0.00 0.00 0.00 4.85
815 862 0.179062 ATCTGATTGCGTGCTCCTCC 60.179 55.000 0.00 0.00 0.00 4.30
836 883 1.003118 CGGGTTGACTCCTCAAATGGA 59.997 52.381 0.00 0.00 38.17 3.41
865 912 7.541437 GCTATAAGAATGGTTACTGGTACGATC 59.459 40.741 0.00 0.00 0.00 3.69
867 914 4.028131 AGAATGGTTACTGGTACGATCCA 58.972 43.478 0.00 0.00 36.00 3.41
902 949 1.142870 CTCCATCGACCTCTCTCTCCT 59.857 57.143 0.00 0.00 0.00 3.69
903 950 1.142060 TCCATCGACCTCTCTCTCCTC 59.858 57.143 0.00 0.00 0.00 3.71
904 951 1.142870 CCATCGACCTCTCTCTCCTCT 59.857 57.143 0.00 0.00 0.00 3.69
909 956 2.170607 CGACCTCTCTCTCCTCTTCTCT 59.829 54.545 0.00 0.00 0.00 3.10
964 1011 2.285827 GCAGAGTGTGCGTAGATTCT 57.714 50.000 0.00 0.00 43.99 2.40
1131 1358 1.349542 ACTACCAGCACCACCACCAA 61.350 55.000 0.00 0.00 0.00 3.67
1224 1451 2.465920 CTCAAGCGCGTCAACGAC 59.534 61.111 8.43 0.00 43.02 4.34
1338 1565 3.941188 CACACCAGCCTCACCGGT 61.941 66.667 0.00 0.00 34.25 5.28
1340 1567 3.941188 CACCAGCCTCACCGGTGT 61.941 66.667 32.74 12.31 44.27 4.16
1341 1568 3.626924 ACCAGCCTCACCGGTGTC 61.627 66.667 32.74 22.01 34.25 3.67
1342 1569 4.742201 CCAGCCTCACCGGTGTCG 62.742 72.222 32.74 23.69 34.25 4.35
1902 2129 4.805231 CGCCGGCGTGTGTCCATA 62.805 66.667 39.71 0.00 34.35 2.74
2295 2522 1.450531 GCATGGGCCCGAAGATGAAG 61.451 60.000 21.17 0.00 0.00 3.02
3538 3775 1.308998 GCGTGTGATTAAGATGGGGG 58.691 55.000 0.00 0.00 0.00 5.40
3541 3778 2.576615 GTGTGATTAAGATGGGGGAGC 58.423 52.381 0.00 0.00 0.00 4.70
3556 3793 1.427020 GAGCGAGATGTTTGCTGCC 59.573 57.895 0.00 0.00 46.85 4.85
3575 3812 5.346011 GCTGCCTGTAAATTTGTTTCTAAGC 59.654 40.000 0.00 0.00 0.00 3.09
3602 3839 6.455360 AACGATATCATGGCAAGTTGAAAT 57.545 33.333 7.16 0.00 0.00 2.17
3621 3858 5.818336 TGAAATTTGAAACTGTAGTCCGACA 59.182 36.000 0.00 0.00 0.00 4.35
3643 3880 5.221303 ACAATATGATTTTCCCGCCATCTTG 60.221 40.000 0.00 0.00 32.72 3.02
3650 3887 0.764369 TCCCGCCATCTTGCCTCTAT 60.764 55.000 0.00 0.00 0.00 1.98
3655 3892 4.074970 CCGCCATCTTGCCTCTATATTTT 58.925 43.478 0.00 0.00 0.00 1.82
3656 3893 4.520492 CCGCCATCTTGCCTCTATATTTTT 59.480 41.667 0.00 0.00 0.00 1.94
3657 3894 5.455392 CGCCATCTTGCCTCTATATTTTTG 58.545 41.667 0.00 0.00 0.00 2.44
3659 3896 6.238731 CGCCATCTTGCCTCTATATTTTTGAA 60.239 38.462 0.00 0.00 0.00 2.69
3660 3897 7.491682 GCCATCTTGCCTCTATATTTTTGAAA 58.508 34.615 0.00 0.00 0.00 2.69
3661 3898 7.436376 GCCATCTTGCCTCTATATTTTTGAAAC 59.564 37.037 0.00 0.00 0.00 2.78
3662 3899 8.689972 CCATCTTGCCTCTATATTTTTGAAACT 58.310 33.333 0.00 0.00 0.00 2.66
3676 3913 7.633193 TTTTTGAAACTTAAGTGCAGAGGTA 57.367 32.000 9.34 0.00 0.00 3.08
3694 3931 5.189145 AGAGGTATCGACTTTGTTTGGGTAT 59.811 40.000 0.00 0.00 0.00 2.73
3695 3932 6.381994 AGAGGTATCGACTTTGTTTGGGTATA 59.618 38.462 0.00 0.00 0.00 1.47
3696 3933 7.070821 AGAGGTATCGACTTTGTTTGGGTATAT 59.929 37.037 0.00 0.00 0.00 0.86
3697 3934 6.990349 AGGTATCGACTTTGTTTGGGTATATG 59.010 38.462 0.00 0.00 0.00 1.78
3698 3935 6.987992 GGTATCGACTTTGTTTGGGTATATGA 59.012 38.462 0.00 0.00 0.00 2.15
3699 3936 7.660208 GGTATCGACTTTGTTTGGGTATATGAT 59.340 37.037 0.00 0.00 0.00 2.45
3700 3937 9.701098 GTATCGACTTTGTTTGGGTATATGATA 57.299 33.333 0.00 0.00 0.00 2.15
3710 3947 7.176515 TGTTTGGGTATATGATATGATTGTGCC 59.823 37.037 0.00 0.00 0.00 5.01
3722 3959 0.321671 ATTGTGCCGTAGTGTGCTCT 59.678 50.000 0.00 0.00 0.00 4.09
3751 3988 4.837093 AGAACGATGGGAAAGGTATTGA 57.163 40.909 0.00 0.00 0.00 2.57
3763 4000 5.277345 GGAAAGGTATTGATGTGACGCATAC 60.277 44.000 0.43 0.00 38.06 2.39
3879 4123 3.132467 CCCTTGGTAGTTGTAGCTACTCC 59.868 52.174 23.84 16.89 40.70 3.85
3922 4166 0.385751 GACATTCTCGGCGGATGAGA 59.614 55.000 19.93 8.54 40.59 3.27
3957 4236 2.100631 CACAGAAACCCTAGCGCCG 61.101 63.158 2.29 0.00 0.00 6.46
3973 4252 2.202932 CGCCGCCTAGAGCATTGT 60.203 61.111 0.00 0.00 44.04 2.71
3988 4267 0.328258 ATTGTTTCACCCCCTCTCCG 59.672 55.000 0.00 0.00 0.00 4.63
4019 4298 1.647346 TGTTACTAGCAAATCCCGCG 58.353 50.000 0.00 0.00 0.00 6.46
4020 4299 0.935196 GTTACTAGCAAATCCCGCGG 59.065 55.000 21.04 21.04 0.00 6.46
4047 4326 1.363807 GTTGCAGCAGGGTTGTTCC 59.636 57.895 0.00 0.00 0.00 3.62
4049 4328 4.043200 GCAGCAGGGTTGTTCCGC 62.043 66.667 0.00 0.00 37.00 5.54
4079 4358 4.870426 CGCGTATGGATATGCCTATTTTCT 59.130 41.667 0.00 0.00 41.15 2.52
4080 4359 5.351465 CGCGTATGGATATGCCTATTTTCTT 59.649 40.000 0.00 0.00 41.15 2.52
4139 4419 0.392461 GGAGTAAATGAGGCGGTGCA 60.392 55.000 0.00 0.00 0.00 4.57
4144 4424 0.250901 AAATGAGGCGGTGCAACTCT 60.251 50.000 0.00 0.00 36.74 3.24
4145 4425 0.674895 AATGAGGCGGTGCAACTCTC 60.675 55.000 13.09 13.09 36.74 3.20
4146 4426 1.548357 ATGAGGCGGTGCAACTCTCT 61.548 55.000 18.47 5.93 36.74 3.10
4147 4427 1.004440 GAGGCGGTGCAACTCTCTT 60.004 57.895 12.81 0.00 36.74 2.85
4148 4428 1.294659 GAGGCGGTGCAACTCTCTTG 61.295 60.000 12.81 0.00 36.74 3.02
4149 4429 1.301716 GGCGGTGCAACTCTCTTGA 60.302 57.895 0.00 0.00 36.74 3.02
4150 4430 0.884704 GGCGGTGCAACTCTCTTGAA 60.885 55.000 0.00 0.00 36.74 2.69
4151 4431 0.235926 GCGGTGCAACTCTCTTGAAC 59.764 55.000 0.00 0.00 36.74 3.18
4152 4432 0.868406 CGGTGCAACTCTCTTGAACC 59.132 55.000 0.00 0.55 43.32 3.62
4153 4433 1.541233 CGGTGCAACTCTCTTGAACCT 60.541 52.381 0.00 0.00 44.33 3.50
4154 4434 1.876156 GGTGCAACTCTCTTGAACCTG 59.124 52.381 0.00 0.00 43.40 4.00
4155 4435 2.485479 GGTGCAACTCTCTTGAACCTGA 60.485 50.000 0.00 0.00 43.40 3.86
4156 4436 3.206150 GTGCAACTCTCTTGAACCTGAA 58.794 45.455 0.00 0.00 0.00 3.02
4157 4437 3.002759 GTGCAACTCTCTTGAACCTGAAC 59.997 47.826 0.00 0.00 0.00 3.18
4158 4438 3.206150 GCAACTCTCTTGAACCTGAACA 58.794 45.455 0.00 0.00 0.00 3.18
4159 4439 3.249559 GCAACTCTCTTGAACCTGAACAG 59.750 47.826 0.00 0.00 0.00 3.16
4160 4440 4.697514 CAACTCTCTTGAACCTGAACAGA 58.302 43.478 3.19 0.00 0.00 3.41
4161 4441 5.303971 CAACTCTCTTGAACCTGAACAGAT 58.696 41.667 3.19 0.00 0.00 2.90
4162 4442 6.459066 CAACTCTCTTGAACCTGAACAGATA 58.541 40.000 3.19 0.00 0.00 1.98
4163 4443 6.031751 ACTCTCTTGAACCTGAACAGATAC 57.968 41.667 3.19 0.00 0.00 2.24
4164 4444 5.777732 ACTCTCTTGAACCTGAACAGATACT 59.222 40.000 3.19 0.00 0.00 2.12
4165 4445 6.030548 TCTCTTGAACCTGAACAGATACTG 57.969 41.667 3.19 0.00 37.52 2.74
4166 4446 4.569943 TCTTGAACCTGAACAGATACTGC 58.430 43.478 3.19 0.00 34.37 4.40
4167 4447 4.040339 TCTTGAACCTGAACAGATACTGCA 59.960 41.667 3.19 0.00 34.37 4.41
4168 4448 3.930336 TGAACCTGAACAGATACTGCAG 58.070 45.455 13.48 13.48 34.37 4.41
4169 4449 2.393271 ACCTGAACAGATACTGCAGC 57.607 50.000 15.27 0.00 34.37 5.25
4170 4450 1.625315 ACCTGAACAGATACTGCAGCA 59.375 47.619 15.27 0.00 34.37 4.41
4171 4451 2.038952 ACCTGAACAGATACTGCAGCAA 59.961 45.455 15.27 2.03 34.37 3.91
4172 4452 2.676839 CCTGAACAGATACTGCAGCAAG 59.323 50.000 15.27 1.99 34.37 4.01
4173 4453 3.332919 CTGAACAGATACTGCAGCAAGT 58.667 45.455 15.27 2.68 34.37 3.16
4174 4454 3.069289 TGAACAGATACTGCAGCAAGTG 58.931 45.455 15.27 9.36 34.37 3.16
4175 4455 2.847327 ACAGATACTGCAGCAAGTGT 57.153 45.000 15.27 10.05 34.37 3.55
4176 4456 2.693069 ACAGATACTGCAGCAAGTGTC 58.307 47.619 15.27 2.84 38.27 3.67
4177 4457 1.657594 CAGATACTGCAGCAAGTGTCG 59.342 52.381 15.27 0.00 41.65 4.35
4178 4458 1.002366 GATACTGCAGCAAGTGTCGG 58.998 55.000 15.27 0.00 30.09 4.79
4179 4459 0.608130 ATACTGCAGCAAGTGTCGGA 59.392 50.000 15.27 0.00 0.00 4.55
4180 4460 0.608130 TACTGCAGCAAGTGTCGGAT 59.392 50.000 15.27 0.00 0.00 4.18
4181 4461 0.952497 ACTGCAGCAAGTGTCGGATG 60.952 55.000 15.27 0.00 0.00 3.51
4182 4462 2.249557 CTGCAGCAAGTGTCGGATGC 62.250 60.000 0.00 0.00 40.34 3.91
4183 4463 3.044059 GCAGCAAGTGTCGGATGCC 62.044 63.158 0.00 0.00 40.93 4.40
4184 4464 1.672030 CAGCAAGTGTCGGATGCCA 60.672 57.895 0.00 0.00 40.93 4.92
4185 4465 1.028330 CAGCAAGTGTCGGATGCCAT 61.028 55.000 0.00 0.00 40.93 4.40
4186 4466 0.541392 AGCAAGTGTCGGATGCCATA 59.459 50.000 0.00 0.00 40.93 2.74
4187 4467 0.657840 GCAAGTGTCGGATGCCATAC 59.342 55.000 0.00 0.00 34.03 2.39
4188 4468 1.299541 CAAGTGTCGGATGCCATACC 58.700 55.000 0.00 0.00 0.00 2.73
4189 4469 0.180406 AAGTGTCGGATGCCATACCC 59.820 55.000 0.00 0.00 0.00 3.69
4190 4470 0.980754 AGTGTCGGATGCCATACCCA 60.981 55.000 0.00 0.00 0.00 4.51
4191 4471 0.107410 GTGTCGGATGCCATACCCAA 60.107 55.000 0.00 0.00 0.00 4.12
4192 4472 0.180171 TGTCGGATGCCATACCCAAG 59.820 55.000 0.00 0.00 0.00 3.61
4193 4473 1.148273 TCGGATGCCATACCCAAGC 59.852 57.895 0.00 0.00 0.00 4.01
4194 4474 1.898574 CGGATGCCATACCCAAGCC 60.899 63.158 0.00 0.00 0.00 4.35
4195 4475 1.531602 GGATGCCATACCCAAGCCC 60.532 63.158 0.00 0.00 0.00 5.19
4196 4476 1.531602 GATGCCATACCCAAGCCCC 60.532 63.158 0.00 0.00 0.00 5.80
4197 4477 2.011617 GATGCCATACCCAAGCCCCT 62.012 60.000 0.00 0.00 0.00 4.79
4198 4478 0.700963 ATGCCATACCCAAGCCCCTA 60.701 55.000 0.00 0.00 0.00 3.53
4199 4479 0.700963 TGCCATACCCAAGCCCCTAT 60.701 55.000 0.00 0.00 0.00 2.57
4200 4480 0.482887 GCCATACCCAAGCCCCTATT 59.517 55.000 0.00 0.00 0.00 1.73
4201 4481 1.133167 GCCATACCCAAGCCCCTATTT 60.133 52.381 0.00 0.00 0.00 1.40
4202 4482 2.876581 CCATACCCAAGCCCCTATTTC 58.123 52.381 0.00 0.00 0.00 2.17
4203 4483 2.490902 CCATACCCAAGCCCCTATTTCC 60.491 54.545 0.00 0.00 0.00 3.13
4204 4484 0.841289 TACCCAAGCCCCTATTTCCG 59.159 55.000 0.00 0.00 0.00 4.30
4205 4485 1.152756 CCCAAGCCCCTATTTCCGG 60.153 63.158 0.00 0.00 0.00 5.14
4206 4486 1.152756 CCAAGCCCCTATTTCCGGG 60.153 63.158 0.00 0.00 42.82 5.73
4214 4494 3.525800 CCCTATTTCCGGGGATGATTT 57.474 47.619 0.00 0.00 45.18 2.17
4215 4495 3.421844 CCCTATTTCCGGGGATGATTTC 58.578 50.000 0.00 0.00 45.18 2.17
4216 4496 3.074538 CCCTATTTCCGGGGATGATTTCT 59.925 47.826 0.00 0.00 45.18 2.52
4217 4497 4.327680 CCTATTTCCGGGGATGATTTCTC 58.672 47.826 0.00 0.00 0.00 2.87
4218 4498 4.042187 CCTATTTCCGGGGATGATTTCTCT 59.958 45.833 0.00 0.00 0.00 3.10
4219 4499 3.560636 TTTCCGGGGATGATTTCTCTC 57.439 47.619 0.00 0.00 0.00 3.20
4220 4500 1.424638 TCCGGGGATGATTTCTCTCC 58.575 55.000 0.00 0.00 0.00 3.71
4221 4501 1.062121 TCCGGGGATGATTTCTCTCCT 60.062 52.381 0.00 0.00 0.00 3.69
4222 4502 2.179204 TCCGGGGATGATTTCTCTCCTA 59.821 50.000 0.00 0.00 0.00 2.94
4223 4503 2.564947 CCGGGGATGATTTCTCTCCTAG 59.435 54.545 0.00 0.00 0.00 3.02
4224 4504 3.501349 CGGGGATGATTTCTCTCCTAGA 58.499 50.000 0.00 0.00 0.00 2.43
4225 4505 4.093011 CGGGGATGATTTCTCTCCTAGAT 58.907 47.826 0.00 0.00 33.05 1.98
4226 4506 4.530161 CGGGGATGATTTCTCTCCTAGATT 59.470 45.833 0.00 0.00 33.05 2.40
4227 4507 5.337169 CGGGGATGATTTCTCTCCTAGATTC 60.337 48.000 0.00 0.00 33.05 2.52
4228 4508 5.545723 GGGGATGATTTCTCTCCTAGATTCA 59.454 44.000 0.00 0.00 33.60 2.57
4229 4509 6.463360 GGGATGATTTCTCTCCTAGATTCAC 58.537 44.000 0.00 0.00 32.53 3.18
4230 4510 6.463360 GGATGATTTCTCTCCTAGATTCACC 58.537 44.000 0.00 0.00 32.53 4.02
4231 4511 5.878406 TGATTTCTCTCCTAGATTCACCC 57.122 43.478 0.00 0.00 33.05 4.61
4232 4512 5.280499 TGATTTCTCTCCTAGATTCACCCA 58.720 41.667 0.00 0.00 33.05 4.51
4233 4513 5.129485 TGATTTCTCTCCTAGATTCACCCAC 59.871 44.000 0.00 0.00 33.05 4.61
4234 4514 4.338795 TTCTCTCCTAGATTCACCCACT 57.661 45.455 0.00 0.00 33.05 4.00
4235 4515 4.338795 TCTCTCCTAGATTCACCCACTT 57.661 45.455 0.00 0.00 0.00 3.16
4236 4516 4.026744 TCTCTCCTAGATTCACCCACTTG 58.973 47.826 0.00 0.00 0.00 3.16
4237 4517 3.107601 TCTCCTAGATTCACCCACTTGG 58.892 50.000 0.00 0.00 41.37 3.61
4238 4518 3.107601 CTCCTAGATTCACCCACTTGGA 58.892 50.000 0.00 0.00 37.39 3.53
4239 4519 3.713764 CTCCTAGATTCACCCACTTGGAT 59.286 47.826 0.00 0.00 35.73 3.41
4240 4520 3.455910 TCCTAGATTCACCCACTTGGATG 59.544 47.826 0.00 0.00 37.39 3.51
4241 4521 3.455910 CCTAGATTCACCCACTTGGATGA 59.544 47.826 0.00 0.00 37.39 2.92
4242 4522 4.080356 CCTAGATTCACCCACTTGGATGAA 60.080 45.833 7.55 7.55 38.02 2.57
4243 4523 4.387026 AGATTCACCCACTTGGATGAAA 57.613 40.909 9.20 0.00 37.55 2.69
4244 4524 4.338879 AGATTCACCCACTTGGATGAAAG 58.661 43.478 9.20 0.00 37.55 2.62
4245 4525 3.593442 TTCACCCACTTGGATGAAAGT 57.407 42.857 2.21 0.00 41.08 2.66
4253 4533 3.654414 ACTTGGATGAAAGTGACTCGAC 58.346 45.455 0.00 0.00 38.95 4.20
4254 4534 2.347697 TGGATGAAAGTGACTCGACG 57.652 50.000 0.00 0.00 0.00 5.12
4255 4535 1.067846 TGGATGAAAGTGACTCGACGG 60.068 52.381 0.00 0.00 0.00 4.79
4256 4536 1.067776 GGATGAAAGTGACTCGACGGT 60.068 52.381 0.00 0.00 0.00 4.83
4257 4537 2.609737 GGATGAAAGTGACTCGACGGTT 60.610 50.000 0.00 0.00 0.00 4.44
4258 4538 3.366679 GGATGAAAGTGACTCGACGGTTA 60.367 47.826 0.00 0.00 0.00 2.85
4259 4539 3.713858 TGAAAGTGACTCGACGGTTAA 57.286 42.857 0.00 0.00 0.00 2.01
4260 4540 4.247267 TGAAAGTGACTCGACGGTTAAT 57.753 40.909 0.00 0.00 0.00 1.40
4261 4541 3.985279 TGAAAGTGACTCGACGGTTAATG 59.015 43.478 0.00 0.00 0.00 1.90
4262 4542 2.649331 AGTGACTCGACGGTTAATGG 57.351 50.000 0.00 0.00 0.00 3.16
4263 4543 1.203994 AGTGACTCGACGGTTAATGGG 59.796 52.381 0.00 0.00 0.00 4.00
4264 4544 0.533491 TGACTCGACGGTTAATGGGG 59.467 55.000 0.00 0.00 0.00 4.96
4265 4545 0.533951 GACTCGACGGTTAATGGGGT 59.466 55.000 0.00 0.00 0.00 4.95
4266 4546 1.750778 GACTCGACGGTTAATGGGGTA 59.249 52.381 0.00 0.00 0.00 3.69
4267 4547 2.363359 GACTCGACGGTTAATGGGGTAT 59.637 50.000 0.00 0.00 0.00 2.73
4268 4548 3.565307 ACTCGACGGTTAATGGGGTATA 58.435 45.455 0.00 0.00 0.00 1.47
4269 4549 3.571401 ACTCGACGGTTAATGGGGTATAG 59.429 47.826 0.00 0.00 0.00 1.31
4270 4550 2.892852 TCGACGGTTAATGGGGTATAGG 59.107 50.000 0.00 0.00 0.00 2.57
4271 4551 2.611224 CGACGGTTAATGGGGTATAGGC 60.611 54.545 0.00 0.00 0.00 3.93
4272 4552 2.369532 GACGGTTAATGGGGTATAGGCA 59.630 50.000 0.00 0.00 0.00 4.75
4273 4553 2.105306 ACGGTTAATGGGGTATAGGCAC 59.895 50.000 0.00 0.00 0.00 5.01
4274 4554 2.774687 GGTTAATGGGGTATAGGCACG 58.225 52.381 0.00 0.00 0.00 5.34
4275 4555 2.105306 GGTTAATGGGGTATAGGCACGT 59.895 50.000 0.00 0.00 0.00 4.49
4276 4556 3.135994 GTTAATGGGGTATAGGCACGTG 58.864 50.000 12.28 12.28 0.00 4.49
4277 4557 1.209621 AATGGGGTATAGGCACGTGT 58.790 50.000 18.38 0.00 0.00 4.49
4278 4558 2.091098 ATGGGGTATAGGCACGTGTA 57.909 50.000 18.38 2.52 0.00 2.90
4279 4559 2.091098 TGGGGTATAGGCACGTGTAT 57.909 50.000 18.38 10.46 0.00 2.29
4280 4560 2.400573 TGGGGTATAGGCACGTGTATT 58.599 47.619 18.38 5.65 0.00 1.89
4281 4561 2.773087 TGGGGTATAGGCACGTGTATTT 59.227 45.455 18.38 4.03 0.00 1.40
4282 4562 3.200385 TGGGGTATAGGCACGTGTATTTT 59.800 43.478 18.38 1.55 0.00 1.82
4283 4563 4.201657 GGGGTATAGGCACGTGTATTTTT 58.798 43.478 18.38 0.46 0.00 1.94
4298 4578 3.363920 TTTTTGGGCTCCTGGGGT 58.636 55.556 0.00 0.00 0.00 4.95
4299 4579 1.152355 TTTTTGGGCTCCTGGGGTG 60.152 57.895 0.00 0.00 0.00 4.61
4300 4580 1.955458 TTTTTGGGCTCCTGGGGTGT 61.955 55.000 0.00 0.00 0.00 4.16
4301 4581 1.068943 TTTTGGGCTCCTGGGGTGTA 61.069 55.000 0.00 0.00 0.00 2.90
4302 4582 1.497309 TTTGGGCTCCTGGGGTGTAG 61.497 60.000 0.00 0.00 0.00 2.74
4303 4583 2.040606 GGGCTCCTGGGGTGTAGA 59.959 66.667 0.00 0.00 0.00 2.59
4304 4584 1.384643 GGGCTCCTGGGGTGTAGAT 60.385 63.158 0.00 0.00 0.00 1.98
4305 4585 0.988678 GGGCTCCTGGGGTGTAGATT 60.989 60.000 0.00 0.00 0.00 2.40
4306 4586 0.919710 GGCTCCTGGGGTGTAGATTT 59.080 55.000 0.00 0.00 0.00 2.17
4307 4587 1.134068 GGCTCCTGGGGTGTAGATTTC 60.134 57.143 0.00 0.00 0.00 2.17
4308 4588 1.840635 GCTCCTGGGGTGTAGATTTCT 59.159 52.381 0.00 0.00 0.00 2.52
4309 4589 2.420687 GCTCCTGGGGTGTAGATTTCTG 60.421 54.545 0.00 0.00 0.00 3.02
4310 4590 2.840651 CTCCTGGGGTGTAGATTTCTGT 59.159 50.000 0.00 0.00 0.00 3.41
4311 4591 2.571653 TCCTGGGGTGTAGATTTCTGTG 59.428 50.000 0.00 0.00 0.00 3.66
4312 4592 2.356125 CCTGGGGTGTAGATTTCTGTGG 60.356 54.545 0.00 0.00 0.00 4.17
4313 4593 2.305927 CTGGGGTGTAGATTTCTGTGGT 59.694 50.000 0.00 0.00 0.00 4.16
4314 4594 2.039746 TGGGGTGTAGATTTCTGTGGTG 59.960 50.000 0.00 0.00 0.00 4.17
4315 4595 2.304761 GGGGTGTAGATTTCTGTGGTGA 59.695 50.000 0.00 0.00 0.00 4.02
4316 4596 3.054361 GGGGTGTAGATTTCTGTGGTGAT 60.054 47.826 0.00 0.00 0.00 3.06
4317 4597 4.567747 GGGGTGTAGATTTCTGTGGTGATT 60.568 45.833 0.00 0.00 0.00 2.57
4318 4598 4.396166 GGGTGTAGATTTCTGTGGTGATTG 59.604 45.833 0.00 0.00 0.00 2.67
4319 4599 5.003804 GGTGTAGATTTCTGTGGTGATTGT 58.996 41.667 0.00 0.00 0.00 2.71
4320 4600 6.170506 GGTGTAGATTTCTGTGGTGATTGTA 58.829 40.000 0.00 0.00 0.00 2.41
4321 4601 6.313905 GGTGTAGATTTCTGTGGTGATTGTAG 59.686 42.308 0.00 0.00 0.00 2.74
4322 4602 6.313905 GTGTAGATTTCTGTGGTGATTGTAGG 59.686 42.308 0.00 0.00 0.00 3.18
4323 4603 4.265073 AGATTTCTGTGGTGATTGTAGGC 58.735 43.478 0.00 0.00 0.00 3.93
4324 4604 3.788227 TTTCTGTGGTGATTGTAGGCT 57.212 42.857 0.00 0.00 0.00 4.58
4325 4605 3.788227 TTCTGTGGTGATTGTAGGCTT 57.212 42.857 0.00 0.00 0.00 4.35
4326 4606 3.788227 TCTGTGGTGATTGTAGGCTTT 57.212 42.857 0.00 0.00 0.00 3.51
4327 4607 3.674997 TCTGTGGTGATTGTAGGCTTTC 58.325 45.455 0.00 0.00 0.00 2.62
4328 4608 2.416547 CTGTGGTGATTGTAGGCTTTCG 59.583 50.000 0.00 0.00 0.00 3.46
4329 4609 1.737793 GTGGTGATTGTAGGCTTTCGG 59.262 52.381 0.00 0.00 0.00 4.30
4330 4610 1.349688 TGGTGATTGTAGGCTTTCGGT 59.650 47.619 0.00 0.00 0.00 4.69
4331 4611 1.737793 GGTGATTGTAGGCTTTCGGTG 59.262 52.381 0.00 0.00 0.00 4.94
4332 4612 2.614481 GGTGATTGTAGGCTTTCGGTGA 60.614 50.000 0.00 0.00 0.00 4.02
4333 4613 3.071479 GTGATTGTAGGCTTTCGGTGAA 58.929 45.455 0.00 0.00 0.00 3.18
4334 4614 3.500680 GTGATTGTAGGCTTTCGGTGAAA 59.499 43.478 0.00 0.00 0.00 2.69
4335 4615 4.023536 GTGATTGTAGGCTTTCGGTGAAAA 60.024 41.667 0.00 0.00 30.84 2.29
4336 4616 4.764823 TGATTGTAGGCTTTCGGTGAAAAT 59.235 37.500 0.00 0.00 30.84 1.82
4337 4617 5.242838 TGATTGTAGGCTTTCGGTGAAAATT 59.757 36.000 0.00 0.00 30.84 1.82
4338 4618 5.523438 TTGTAGGCTTTCGGTGAAAATTT 57.477 34.783 0.00 0.00 30.84 1.82
4339 4619 5.116069 TGTAGGCTTTCGGTGAAAATTTC 57.884 39.130 0.00 0.00 30.84 2.17
4340 4620 3.660501 AGGCTTTCGGTGAAAATTTCC 57.339 42.857 3.00 0.00 30.84 3.13
4341 4621 3.230976 AGGCTTTCGGTGAAAATTTCCT 58.769 40.909 3.00 0.00 30.84 3.36
4342 4622 3.005791 AGGCTTTCGGTGAAAATTTCCTG 59.994 43.478 3.00 0.64 30.84 3.86
4343 4623 3.005367 GGCTTTCGGTGAAAATTTCCTGA 59.995 43.478 3.00 2.94 30.84 3.86
4344 4624 4.500716 GGCTTTCGGTGAAAATTTCCTGAA 60.501 41.667 3.00 8.40 30.84 3.02
4345 4625 4.444388 GCTTTCGGTGAAAATTTCCTGAAC 59.556 41.667 13.95 2.83 30.84 3.18
4346 4626 5.584253 TTTCGGTGAAAATTTCCTGAACA 57.416 34.783 13.95 6.99 30.33 3.18
4347 4627 5.782893 TTCGGTGAAAATTTCCTGAACAT 57.217 34.783 3.00 0.00 0.00 2.71
4348 4628 5.119931 TCGGTGAAAATTTCCTGAACATG 57.880 39.130 3.00 0.00 0.00 3.21
4349 4629 3.674753 CGGTGAAAATTTCCTGAACATGC 59.325 43.478 3.00 0.00 0.00 4.06
4350 4630 4.559300 CGGTGAAAATTTCCTGAACATGCT 60.559 41.667 3.00 0.00 0.00 3.79
4351 4631 5.299949 GGTGAAAATTTCCTGAACATGCTT 58.700 37.500 3.00 0.00 0.00 3.91
4352 4632 5.178067 GGTGAAAATTTCCTGAACATGCTTG 59.822 40.000 3.00 0.00 0.00 4.01
4353 4633 4.751098 TGAAAATTTCCTGAACATGCTTGC 59.249 37.500 3.00 0.00 0.00 4.01
4354 4634 4.612264 AAATTTCCTGAACATGCTTGCT 57.388 36.364 0.00 0.00 0.00 3.91
4355 4635 3.587797 ATTTCCTGAACATGCTTGCTG 57.412 42.857 0.00 0.00 0.00 4.41
4356 4636 2.275134 TTCCTGAACATGCTTGCTGA 57.725 45.000 0.00 0.00 0.00 4.26
4357 4637 2.502142 TCCTGAACATGCTTGCTGAT 57.498 45.000 0.00 0.00 0.00 2.90
4358 4638 2.799017 TCCTGAACATGCTTGCTGATT 58.201 42.857 0.00 0.00 0.00 2.57
4359 4639 2.751259 TCCTGAACATGCTTGCTGATTC 59.249 45.455 0.00 0.00 0.00 2.52
4360 4640 2.753452 CCTGAACATGCTTGCTGATTCT 59.247 45.455 0.00 0.00 0.00 2.40
4361 4641 3.427638 CCTGAACATGCTTGCTGATTCTG 60.428 47.826 0.00 1.07 0.00 3.02
4362 4642 3.151554 TGAACATGCTTGCTGATTCTGT 58.848 40.909 0.00 0.00 0.00 3.41
4363 4643 3.057806 TGAACATGCTTGCTGATTCTGTG 60.058 43.478 0.00 0.00 0.00 3.66
4364 4644 1.201647 ACATGCTTGCTGATTCTGTGC 59.798 47.619 0.00 0.00 0.00 4.57
4365 4645 1.201414 CATGCTTGCTGATTCTGTGCA 59.799 47.619 0.00 0.00 34.69 4.57
4366 4646 1.541379 TGCTTGCTGATTCTGTGCAT 58.459 45.000 0.00 0.00 36.55 3.96
4367 4647 1.201414 TGCTTGCTGATTCTGTGCATG 59.799 47.619 0.00 0.00 36.55 4.06
4368 4648 1.201647 GCTTGCTGATTCTGTGCATGT 59.798 47.619 0.00 0.00 36.55 3.21
4369 4649 2.863739 CTTGCTGATTCTGTGCATGTG 58.136 47.619 0.00 0.00 36.55 3.21
4370 4650 1.900245 TGCTGATTCTGTGCATGTGT 58.100 45.000 0.00 0.00 0.00 3.72
4371 4651 1.808343 TGCTGATTCTGTGCATGTGTC 59.192 47.619 0.00 0.00 0.00 3.67
4372 4652 2.082231 GCTGATTCTGTGCATGTGTCT 58.918 47.619 0.00 0.00 0.00 3.41
4373 4653 3.264947 GCTGATTCTGTGCATGTGTCTA 58.735 45.455 0.00 0.00 0.00 2.59
4374 4654 3.309138 GCTGATTCTGTGCATGTGTCTAG 59.691 47.826 0.00 0.00 0.00 2.43
4375 4655 3.264947 TGATTCTGTGCATGTGTCTAGC 58.735 45.455 0.00 0.00 0.00 3.42
4376 4656 2.837532 TTCTGTGCATGTGTCTAGCA 57.162 45.000 0.00 0.00 35.63 3.49
4377 4657 2.837532 TCTGTGCATGTGTCTAGCAA 57.162 45.000 0.00 0.00 40.35 3.91
4378 4658 3.124578 TCTGTGCATGTGTCTAGCAAA 57.875 42.857 0.00 0.00 40.35 3.68
4379 4659 3.678289 TCTGTGCATGTGTCTAGCAAAT 58.322 40.909 0.00 0.00 40.35 2.32
4380 4660 4.074259 TCTGTGCATGTGTCTAGCAAATT 58.926 39.130 0.00 0.00 40.35 1.82
4381 4661 4.154737 TCTGTGCATGTGTCTAGCAAATTC 59.845 41.667 0.00 0.00 40.35 2.17
4382 4662 4.074259 TGTGCATGTGTCTAGCAAATTCT 58.926 39.130 0.00 0.00 40.35 2.40
4383 4663 4.083164 TGTGCATGTGTCTAGCAAATTCTG 60.083 41.667 0.00 0.00 40.35 3.02
4384 4664 4.074259 TGCATGTGTCTAGCAAATTCTGT 58.926 39.130 0.00 0.00 34.97 3.41
4385 4665 4.520111 TGCATGTGTCTAGCAAATTCTGTT 59.480 37.500 0.00 0.00 34.97 3.16
4386 4666 5.704978 TGCATGTGTCTAGCAAATTCTGTTA 59.295 36.000 0.00 0.00 34.97 2.41
4387 4667 6.024049 GCATGTGTCTAGCAAATTCTGTTAC 58.976 40.000 0.00 0.00 0.00 2.50
4388 4668 5.839262 TGTGTCTAGCAAATTCTGTTACG 57.161 39.130 0.00 0.00 0.00 3.18
4389 4669 5.294356 TGTGTCTAGCAAATTCTGTTACGT 58.706 37.500 0.00 0.00 0.00 3.57
4390 4670 5.176774 TGTGTCTAGCAAATTCTGTTACGTG 59.823 40.000 0.00 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 4.088421 CCGTTTCATCTCGTCGGG 57.912 61.111 0.00 0.00 37.92 5.14
19 20 2.165301 GCCCGTTTCATCTCGTCGG 61.165 63.158 0.00 0.00 40.72 4.79
20 21 2.505498 CGCCCGTTTCATCTCGTCG 61.505 63.158 0.00 0.00 0.00 5.12
24 25 2.174319 GGCTCGCCCGTTTCATCTC 61.174 63.158 0.00 0.00 0.00 2.75
25 26 2.125106 GGCTCGCCCGTTTCATCT 60.125 61.111 0.00 0.00 0.00 2.90
48 50 8.883731 CAGGTCGTATAAGATTTTCTTTCATGT 58.116 33.333 0.00 0.00 37.89 3.21
53 55 7.391620 TGACCAGGTCGTATAAGATTTTCTTT 58.608 34.615 15.24 0.00 35.24 2.52
71 73 2.101415 TGAGATGAAGCGTATGACCAGG 59.899 50.000 0.00 0.00 0.00 4.45
85 87 2.174854 TCGATGGGGTCTACTGAGATGA 59.825 50.000 0.00 0.00 33.14 2.92
127 129 4.559153 CTGGGTGGTTGCTTTAAGATTTG 58.441 43.478 0.00 0.00 0.00 2.32
134 136 1.145571 ACTCCTGGGTGGTTGCTTTA 58.854 50.000 0.00 0.00 37.07 1.85
145 147 1.203050 ACATTTGGGTCAACTCCTGGG 60.203 52.381 0.00 0.00 0.00 4.45
146 148 1.888512 CACATTTGGGTCAACTCCTGG 59.111 52.381 0.00 0.00 0.00 4.45
147 149 2.862541 TCACATTTGGGTCAACTCCTG 58.137 47.619 0.00 0.00 0.00 3.86
149 151 2.493278 CCATCACATTTGGGTCAACTCC 59.507 50.000 0.00 0.00 0.00 3.85
214 237 9.358406 TCATTATCCATCAATAGCACTGAAAAT 57.642 29.630 0.00 0.00 0.00 1.82
245 268 0.111639 GGGTGCTTGGGTTACTTGGA 59.888 55.000 0.00 0.00 0.00 3.53
329 352 4.383850 TTGTTTTGCAGTGCTGTAATGT 57.616 36.364 17.60 0.00 35.24 2.71
357 387 3.118847 TGTTTGTGTGGCACATCATGTTT 60.119 39.130 24.95 0.00 44.16 2.83
392 422 4.735873 GCAACTTCTCTGCTCTTGCTTTTT 60.736 41.667 0.00 0.00 40.48 1.94
393 423 3.243334 GCAACTTCTCTGCTCTTGCTTTT 60.243 43.478 0.00 0.00 40.48 2.27
395 425 1.878734 GCAACTTCTCTGCTCTTGCTT 59.121 47.619 0.00 0.00 40.48 3.91
477 510 0.329596 AGTCAGGAAATGTGGAGGCC 59.670 55.000 0.00 0.00 0.00 5.19
548 581 5.233326 GCCAAAGCTCACCAAATGGGTAG 62.233 52.174 4.17 1.98 42.03 3.18
549 582 3.406678 GCCAAAGCTCACCAAATGGGTA 61.407 50.000 4.17 0.00 42.03 3.69
550 583 2.713034 GCCAAAGCTCACCAAATGGGT 61.713 52.381 4.17 0.00 43.92 4.51
644 677 0.185175 GGGGTCAAGAAGGTGGTTGT 59.815 55.000 0.00 0.00 0.00 3.32
779 826 3.376935 ATGAGGTTGGCGAGCGAGG 62.377 63.158 0.00 0.00 0.00 4.63
780 827 1.880340 GATGAGGTTGGCGAGCGAG 60.880 63.158 0.00 0.00 0.00 5.03
815 862 1.453155 CATTTGAGGAGTCAACCCGG 58.547 55.000 0.00 0.00 42.60 5.73
836 883 7.255520 CGTACCAGTAACCATTCTTATAGCTCT 60.256 40.741 0.00 0.00 0.00 4.09
865 912 1.139853 GGAGCTGGTTGGACTCTATGG 59.860 57.143 0.00 0.00 0.00 2.74
867 914 2.254152 TGGAGCTGGTTGGACTCTAT 57.746 50.000 0.00 0.00 0.00 1.98
902 949 1.092921 GCGGCGAGAGAGAGAGAAGA 61.093 60.000 12.98 0.00 0.00 2.87
903 950 1.355210 GCGGCGAGAGAGAGAGAAG 59.645 63.158 12.98 0.00 0.00 2.85
904 951 2.465299 CGCGGCGAGAGAGAGAGAA 61.465 63.158 19.16 0.00 0.00 2.87
947 994 6.458232 AATCTAAGAATCTACGCACACTCT 57.542 37.500 0.00 0.00 0.00 3.24
948 995 8.804688 ATAAATCTAAGAATCTACGCACACTC 57.195 34.615 0.00 0.00 0.00 3.51
955 1002 6.468319 CCCGCGTATAAATCTAAGAATCTACG 59.532 42.308 4.92 0.00 35.19 3.51
956 1003 6.750963 CCCCGCGTATAAATCTAAGAATCTAC 59.249 42.308 4.92 0.00 0.00 2.59
957 1004 6.660521 TCCCCGCGTATAAATCTAAGAATCTA 59.339 38.462 4.92 0.00 0.00 1.98
958 1005 5.479375 TCCCCGCGTATAAATCTAAGAATCT 59.521 40.000 4.92 0.00 0.00 2.40
959 1006 5.717119 TCCCCGCGTATAAATCTAAGAATC 58.283 41.667 4.92 0.00 0.00 2.52
960 1007 5.721232 CTCCCCGCGTATAAATCTAAGAAT 58.279 41.667 4.92 0.00 0.00 2.40
961 1008 4.560108 GCTCCCCGCGTATAAATCTAAGAA 60.560 45.833 4.92 0.00 0.00 2.52
962 1009 3.057033 GCTCCCCGCGTATAAATCTAAGA 60.057 47.826 4.92 0.00 0.00 2.10
963 1010 3.251571 GCTCCCCGCGTATAAATCTAAG 58.748 50.000 4.92 0.00 0.00 2.18
964 1011 3.308438 GCTCCCCGCGTATAAATCTAA 57.692 47.619 4.92 0.00 0.00 2.10
1338 1565 3.968568 CCGACACCGACACCGACA 61.969 66.667 0.00 0.00 38.22 4.35
1374 1601 1.148310 CGGTGAACTTGAGCACGAAT 58.852 50.000 0.00 0.00 35.91 3.34
1590 1817 1.377725 CTTCCTGATGCGGTTGGCT 60.378 57.895 0.00 0.00 44.05 4.75
1641 1868 1.774254 AGGTTGTTGTCCATGGACTCA 59.226 47.619 37.92 31.91 44.80 3.41
1923 2150 1.596934 GAGGAACAGCACGATGGGA 59.403 57.895 0.00 0.00 0.00 4.37
3538 3775 1.023513 AGGCAGCAAACATCTCGCTC 61.024 55.000 0.00 0.00 32.48 5.03
3541 3778 1.725641 TACAGGCAGCAAACATCTCG 58.274 50.000 0.00 0.00 0.00 4.04
3556 3793 9.103048 CGTTACAGCTTAGAAACAAATTTACAG 57.897 33.333 0.00 0.00 0.00 2.74
3575 3812 5.523552 TCAACTTGCCATGATATCGTTACAG 59.476 40.000 0.00 0.00 0.00 2.74
3602 3839 7.156000 TCATATTGTCGGACTACAGTTTCAAA 58.844 34.615 9.88 0.00 0.00 2.69
3621 3858 4.262164 GCAAGATGGCGGGAAAATCATATT 60.262 41.667 0.00 0.00 0.00 1.28
3643 3880 9.290483 GCACTTAAGTTTCAAAAATATAGAGGC 57.710 33.333 5.07 0.00 0.00 4.70
3650 3887 8.232913 ACCTCTGCACTTAAGTTTCAAAAATA 57.767 30.769 5.07 0.00 0.00 1.40
3655 3892 5.637810 CGATACCTCTGCACTTAAGTTTCAA 59.362 40.000 5.07 0.00 0.00 2.69
3656 3893 5.047590 TCGATACCTCTGCACTTAAGTTTCA 60.048 40.000 5.07 6.29 0.00 2.69
3657 3894 5.288952 GTCGATACCTCTGCACTTAAGTTTC 59.711 44.000 5.07 1.49 0.00 2.78
3659 3896 4.463186 AGTCGATACCTCTGCACTTAAGTT 59.537 41.667 5.07 0.00 0.00 2.66
3660 3897 4.017808 AGTCGATACCTCTGCACTTAAGT 58.982 43.478 1.12 1.12 0.00 2.24
3661 3898 4.640789 AGTCGATACCTCTGCACTTAAG 57.359 45.455 0.00 0.00 0.00 1.85
3662 3899 5.168569 CAAAGTCGATACCTCTGCACTTAA 58.831 41.667 0.00 0.00 0.00 1.85
3663 3900 4.219944 ACAAAGTCGATACCTCTGCACTTA 59.780 41.667 0.00 0.00 0.00 2.24
3668 3905 3.125316 CCAAACAAAGTCGATACCTCTGC 59.875 47.826 0.00 0.00 0.00 4.26
3676 3913 9.219603 CATATCATATACCCAAACAAAGTCGAT 57.780 33.333 0.00 0.00 0.00 3.59
3694 3931 5.925969 CACACTACGGCACAATCATATCATA 59.074 40.000 0.00 0.00 0.00 2.15
3695 3932 4.751600 CACACTACGGCACAATCATATCAT 59.248 41.667 0.00 0.00 0.00 2.45
3696 3933 4.119136 CACACTACGGCACAATCATATCA 58.881 43.478 0.00 0.00 0.00 2.15
3697 3934 3.059597 GCACACTACGGCACAATCATATC 60.060 47.826 0.00 0.00 0.00 1.63
3698 3935 2.872245 GCACACTACGGCACAATCATAT 59.128 45.455 0.00 0.00 0.00 1.78
3699 3936 2.093711 AGCACACTACGGCACAATCATA 60.094 45.455 0.00 0.00 0.00 2.15
3700 3937 1.086696 GCACACTACGGCACAATCAT 58.913 50.000 0.00 0.00 0.00 2.45
3710 3947 3.063588 TCTTCGTCATAGAGCACACTACG 59.936 47.826 0.00 0.00 0.00 3.51
3722 3959 4.430007 CTTTCCCATCGTTCTTCGTCATA 58.570 43.478 0.00 0.00 40.80 2.15
3751 3988 1.464608 GTGTGCTTGTATGCGTCACAT 59.535 47.619 1.25 0.00 43.18 3.21
3763 4000 4.478699 CTCACCAAACATATGTGTGCTTG 58.521 43.478 19.12 16.89 38.92 4.01
3922 4166 1.203038 TGTGGGTGCCAACTTCATGAT 60.203 47.619 0.00 0.00 34.18 2.45
3957 4236 0.378610 GAAACAATGCTCTAGGCGGC 59.621 55.000 0.00 0.00 45.43 6.53
3963 4242 1.992557 AGGGGGTGAAACAATGCTCTA 59.007 47.619 0.00 0.00 39.98 2.43
3967 4246 1.177401 GAGAGGGGGTGAAACAATGC 58.823 55.000 0.00 0.00 39.98 3.56
3973 4252 1.057851 ACAACGGAGAGGGGGTGAAA 61.058 55.000 0.00 0.00 0.00 2.69
3988 4267 4.575885 TGCTAGTAACATCCTCCAACAAC 58.424 43.478 0.00 0.00 0.00 3.32
4019 4298 1.304381 TGCTGCAACCATCCTTCCC 60.304 57.895 0.00 0.00 0.00 3.97
4020 4299 1.318158 CCTGCTGCAACCATCCTTCC 61.318 60.000 3.02 0.00 0.00 3.46
4049 4328 3.551890 GGCATATCCATACGCGAACATAG 59.448 47.826 15.93 0.00 34.01 2.23
4064 4343 6.148480 ACGATCAGCAAGAAAATAGGCATATC 59.852 38.462 0.00 0.00 0.00 1.63
4079 4358 3.380004 AGAAAACAACCAACGATCAGCAA 59.620 39.130 0.00 0.00 0.00 3.91
4080 4359 2.948979 AGAAAACAACCAACGATCAGCA 59.051 40.909 0.00 0.00 0.00 4.41
4139 4419 5.559148 ATCTGTTCAGGTTCAAGAGAGTT 57.441 39.130 0.00 0.00 0.00 3.01
4144 4424 4.040339 TGCAGTATCTGTTCAGGTTCAAGA 59.960 41.667 0.00 0.00 33.43 3.02
4145 4425 4.318332 TGCAGTATCTGTTCAGGTTCAAG 58.682 43.478 0.00 0.00 33.43 3.02
4146 4426 4.318332 CTGCAGTATCTGTTCAGGTTCAA 58.682 43.478 5.25 0.00 33.43 2.69
4147 4427 3.866066 GCTGCAGTATCTGTTCAGGTTCA 60.866 47.826 16.64 0.00 33.43 3.18
4148 4428 2.675348 GCTGCAGTATCTGTTCAGGTTC 59.325 50.000 16.64 0.00 33.43 3.62
4149 4429 2.038952 TGCTGCAGTATCTGTTCAGGTT 59.961 45.455 16.64 0.00 33.43 3.50
4150 4430 1.625315 TGCTGCAGTATCTGTTCAGGT 59.375 47.619 16.64 0.00 33.43 4.00
4151 4431 2.391616 TGCTGCAGTATCTGTTCAGG 57.608 50.000 16.64 0.00 33.43 3.86
4152 4432 3.124806 CACTTGCTGCAGTATCTGTTCAG 59.875 47.826 16.64 5.72 33.43 3.02
4153 4433 3.069289 CACTTGCTGCAGTATCTGTTCA 58.931 45.455 16.64 0.00 33.43 3.18
4154 4434 3.070018 ACACTTGCTGCAGTATCTGTTC 58.930 45.455 16.64 0.00 33.43 3.18
4155 4435 3.070018 GACACTTGCTGCAGTATCTGTT 58.930 45.455 16.64 0.70 33.43 3.16
4156 4436 2.693069 GACACTTGCTGCAGTATCTGT 58.307 47.619 16.64 14.32 33.43 3.41
4157 4437 1.657594 CGACACTTGCTGCAGTATCTG 59.342 52.381 16.64 11.20 34.12 2.90
4158 4438 1.404717 CCGACACTTGCTGCAGTATCT 60.405 52.381 16.64 0.00 0.00 1.98
4159 4439 1.002366 CCGACACTTGCTGCAGTATC 58.998 55.000 16.64 4.27 0.00 2.24
4160 4440 0.608130 TCCGACACTTGCTGCAGTAT 59.392 50.000 16.64 0.00 0.00 2.12
4161 4441 0.608130 ATCCGACACTTGCTGCAGTA 59.392 50.000 16.64 8.31 0.00 2.74
4162 4442 0.952497 CATCCGACACTTGCTGCAGT 60.952 55.000 16.64 0.00 0.00 4.40
4163 4443 1.792301 CATCCGACACTTGCTGCAG 59.208 57.895 10.11 10.11 0.00 4.41
4164 4444 2.327343 GCATCCGACACTTGCTGCA 61.327 57.895 0.00 0.00 33.61 4.41
4165 4445 2.482374 GCATCCGACACTTGCTGC 59.518 61.111 0.00 0.00 33.61 5.25
4166 4446 1.028330 ATGGCATCCGACACTTGCTG 61.028 55.000 0.00 0.00 36.62 4.41
4167 4447 0.541392 TATGGCATCCGACACTTGCT 59.459 50.000 1.65 0.00 36.62 3.91
4168 4448 0.657840 GTATGGCATCCGACACTTGC 59.342 55.000 1.65 0.00 27.59 4.01
4169 4449 1.299541 GGTATGGCATCCGACACTTG 58.700 55.000 1.65 0.00 27.59 3.16
4170 4450 0.180406 GGGTATGGCATCCGACACTT 59.820 55.000 1.65 0.00 27.59 3.16
4171 4451 0.980754 TGGGTATGGCATCCGACACT 60.981 55.000 1.65 0.00 27.59 3.55
4172 4452 0.107410 TTGGGTATGGCATCCGACAC 60.107 55.000 1.65 0.00 27.59 3.67
4173 4453 0.180171 CTTGGGTATGGCATCCGACA 59.820 55.000 1.65 0.00 0.00 4.35
4174 4454 1.166531 GCTTGGGTATGGCATCCGAC 61.167 60.000 1.65 0.00 0.00 4.79
4175 4455 1.148273 GCTTGGGTATGGCATCCGA 59.852 57.895 1.65 0.00 0.00 4.55
4176 4456 1.898574 GGCTTGGGTATGGCATCCG 60.899 63.158 1.65 0.00 0.00 4.18
4177 4457 1.531602 GGGCTTGGGTATGGCATCC 60.532 63.158 1.65 5.29 0.00 3.51
4178 4458 1.531602 GGGGCTTGGGTATGGCATC 60.532 63.158 1.65 0.00 0.00 3.91
4179 4459 0.700963 TAGGGGCTTGGGTATGGCAT 60.701 55.000 4.88 4.88 0.00 4.40
4180 4460 0.700963 ATAGGGGCTTGGGTATGGCA 60.701 55.000 0.00 0.00 0.00 4.92
4181 4461 0.482887 AATAGGGGCTTGGGTATGGC 59.517 55.000 0.00 0.00 0.00 4.40
4182 4462 2.490902 GGAAATAGGGGCTTGGGTATGG 60.491 54.545 0.00 0.00 0.00 2.74
4183 4463 2.814097 CGGAAATAGGGGCTTGGGTATG 60.814 54.545 0.00 0.00 0.00 2.39
4184 4464 1.423921 CGGAAATAGGGGCTTGGGTAT 59.576 52.381 0.00 0.00 0.00 2.73
4185 4465 0.841289 CGGAAATAGGGGCTTGGGTA 59.159 55.000 0.00 0.00 0.00 3.69
4186 4466 1.613061 CGGAAATAGGGGCTTGGGT 59.387 57.895 0.00 0.00 0.00 4.51
4187 4467 1.152756 CCGGAAATAGGGGCTTGGG 60.153 63.158 0.00 0.00 0.00 4.12
4188 4468 1.152756 CCCGGAAATAGGGGCTTGG 60.153 63.158 0.73 0.00 45.14 3.61
4189 4469 4.579127 CCCGGAAATAGGGGCTTG 57.421 61.111 0.73 0.00 45.14 4.01
4195 4475 4.042187 AGAGAAATCATCCCCGGAAATAGG 59.958 45.833 0.73 0.00 0.00 2.57
4196 4476 5.234466 AGAGAAATCATCCCCGGAAATAG 57.766 43.478 0.73 0.00 0.00 1.73
4197 4477 4.041691 GGAGAGAAATCATCCCCGGAAATA 59.958 45.833 0.73 0.00 0.00 1.40
4198 4478 3.181439 GGAGAGAAATCATCCCCGGAAAT 60.181 47.826 0.73 0.00 0.00 2.17
4199 4479 2.172717 GGAGAGAAATCATCCCCGGAAA 59.827 50.000 0.73 0.00 0.00 3.13
4200 4480 1.768870 GGAGAGAAATCATCCCCGGAA 59.231 52.381 0.73 0.00 0.00 4.30
4201 4481 1.062121 AGGAGAGAAATCATCCCCGGA 60.062 52.381 0.73 0.00 33.30 5.14
4202 4482 1.428869 AGGAGAGAAATCATCCCCGG 58.571 55.000 0.00 0.00 33.30 5.73
4203 4483 3.501349 TCTAGGAGAGAAATCATCCCCG 58.499 50.000 0.00 0.00 33.30 5.73
4204 4484 5.545723 TGAATCTAGGAGAGAAATCATCCCC 59.454 44.000 0.00 0.00 37.85 4.81
4205 4485 6.463360 GTGAATCTAGGAGAGAAATCATCCC 58.537 44.000 0.00 0.00 37.85 3.85
4206 4486 6.463360 GGTGAATCTAGGAGAGAAATCATCC 58.537 44.000 0.00 0.00 37.85 3.51
4207 4487 6.042552 TGGGTGAATCTAGGAGAGAAATCATC 59.957 42.308 0.00 0.00 37.85 2.92
4208 4488 5.907662 TGGGTGAATCTAGGAGAGAAATCAT 59.092 40.000 0.00 0.00 37.85 2.45
4209 4489 5.129485 GTGGGTGAATCTAGGAGAGAAATCA 59.871 44.000 0.00 0.00 37.85 2.57
4210 4490 5.365314 AGTGGGTGAATCTAGGAGAGAAATC 59.635 44.000 0.00 0.00 37.85 2.17
4211 4491 5.284582 AGTGGGTGAATCTAGGAGAGAAAT 58.715 41.667 0.00 0.00 37.85 2.17
4212 4492 4.689062 AGTGGGTGAATCTAGGAGAGAAA 58.311 43.478 0.00 0.00 37.85 2.52
4213 4493 4.338795 AGTGGGTGAATCTAGGAGAGAA 57.661 45.455 0.00 0.00 37.85 2.87
4214 4494 4.026744 CAAGTGGGTGAATCTAGGAGAGA 58.973 47.826 0.00 0.00 39.01 3.10
4215 4495 3.133721 CCAAGTGGGTGAATCTAGGAGAG 59.866 52.174 0.00 0.00 0.00 3.20
4216 4496 3.107601 CCAAGTGGGTGAATCTAGGAGA 58.892 50.000 0.00 0.00 0.00 3.71
4217 4497 3.107601 TCCAAGTGGGTGAATCTAGGAG 58.892 50.000 0.00 0.00 38.11 3.69
4218 4498 3.199442 TCCAAGTGGGTGAATCTAGGA 57.801 47.619 0.00 0.00 38.11 2.94
4232 4512 3.654414 GTCGAGTCACTTTCATCCAAGT 58.346 45.455 0.00 0.00 37.49 3.16
4233 4513 2.663602 CGTCGAGTCACTTTCATCCAAG 59.336 50.000 0.00 0.00 0.00 3.61
4234 4514 2.609491 CCGTCGAGTCACTTTCATCCAA 60.609 50.000 0.00 0.00 0.00 3.53
4235 4515 1.067846 CCGTCGAGTCACTTTCATCCA 60.068 52.381 0.00 0.00 0.00 3.41
4236 4516 1.067776 ACCGTCGAGTCACTTTCATCC 60.068 52.381 0.00 0.00 0.00 3.51
4237 4517 2.349297 ACCGTCGAGTCACTTTCATC 57.651 50.000 0.00 0.00 0.00 2.92
4238 4518 2.814280 AACCGTCGAGTCACTTTCAT 57.186 45.000 0.00 0.00 0.00 2.57
4239 4519 3.713858 TTAACCGTCGAGTCACTTTCA 57.286 42.857 0.00 0.00 0.00 2.69
4240 4520 3.367025 CCATTAACCGTCGAGTCACTTTC 59.633 47.826 0.00 0.00 0.00 2.62
4241 4521 3.323243 CCATTAACCGTCGAGTCACTTT 58.677 45.455 0.00 0.00 0.00 2.66
4242 4522 2.353406 CCCATTAACCGTCGAGTCACTT 60.353 50.000 0.00 0.00 0.00 3.16
4243 4523 1.203994 CCCATTAACCGTCGAGTCACT 59.796 52.381 0.00 0.00 0.00 3.41
4244 4524 1.636988 CCCATTAACCGTCGAGTCAC 58.363 55.000 0.00 0.00 0.00 3.67
4245 4525 0.533491 CCCCATTAACCGTCGAGTCA 59.467 55.000 0.00 0.00 0.00 3.41
4246 4526 0.533951 ACCCCATTAACCGTCGAGTC 59.466 55.000 0.00 0.00 0.00 3.36
4247 4527 1.851304 TACCCCATTAACCGTCGAGT 58.149 50.000 0.00 0.00 0.00 4.18
4248 4528 3.057033 CCTATACCCCATTAACCGTCGAG 60.057 52.174 0.00 0.00 0.00 4.04
4249 4529 2.892852 CCTATACCCCATTAACCGTCGA 59.107 50.000 0.00 0.00 0.00 4.20
4250 4530 2.611224 GCCTATACCCCATTAACCGTCG 60.611 54.545 0.00 0.00 0.00 5.12
4251 4531 2.369532 TGCCTATACCCCATTAACCGTC 59.630 50.000 0.00 0.00 0.00 4.79
4252 4532 2.105306 GTGCCTATACCCCATTAACCGT 59.895 50.000 0.00 0.00 0.00 4.83
4253 4533 2.774687 GTGCCTATACCCCATTAACCG 58.225 52.381 0.00 0.00 0.00 4.44
4254 4534 2.105306 ACGTGCCTATACCCCATTAACC 59.895 50.000 0.00 0.00 0.00 2.85
4255 4535 3.135994 CACGTGCCTATACCCCATTAAC 58.864 50.000 0.82 0.00 0.00 2.01
4256 4536 2.773087 ACACGTGCCTATACCCCATTAA 59.227 45.455 17.22 0.00 0.00 1.40
4257 4537 2.400573 ACACGTGCCTATACCCCATTA 58.599 47.619 17.22 0.00 0.00 1.90
4258 4538 1.209621 ACACGTGCCTATACCCCATT 58.790 50.000 17.22 0.00 0.00 3.16
4259 4539 2.091098 TACACGTGCCTATACCCCAT 57.909 50.000 17.22 0.00 0.00 4.00
4260 4540 2.091098 ATACACGTGCCTATACCCCA 57.909 50.000 17.22 0.00 0.00 4.96
4261 4541 3.480505 AAATACACGTGCCTATACCCC 57.519 47.619 17.22 0.00 0.00 4.95
4281 4561 1.152355 CACCCCAGGAGCCCAAAAA 60.152 57.895 0.00 0.00 0.00 1.94
4282 4562 1.068943 TACACCCCAGGAGCCCAAAA 61.069 55.000 0.00 0.00 0.00 2.44
4283 4563 1.464395 TACACCCCAGGAGCCCAAA 60.464 57.895 0.00 0.00 0.00 3.28
4284 4564 1.923395 CTACACCCCAGGAGCCCAA 60.923 63.158 0.00 0.00 0.00 4.12
4285 4565 2.194951 ATCTACACCCCAGGAGCCCA 62.195 60.000 0.00 0.00 0.00 5.36
4286 4566 0.988678 AATCTACACCCCAGGAGCCC 60.989 60.000 0.00 0.00 0.00 5.19
4287 4567 0.919710 AAATCTACACCCCAGGAGCC 59.080 55.000 0.00 0.00 0.00 4.70
4288 4568 1.840635 AGAAATCTACACCCCAGGAGC 59.159 52.381 0.00 0.00 0.00 4.70
4289 4569 2.840651 ACAGAAATCTACACCCCAGGAG 59.159 50.000 0.00 0.00 0.00 3.69
4290 4570 2.571653 CACAGAAATCTACACCCCAGGA 59.428 50.000 0.00 0.00 0.00 3.86
4291 4571 2.356125 CCACAGAAATCTACACCCCAGG 60.356 54.545 0.00 0.00 0.00 4.45
4292 4572 2.305927 ACCACAGAAATCTACACCCCAG 59.694 50.000 0.00 0.00 0.00 4.45
4293 4573 2.039746 CACCACAGAAATCTACACCCCA 59.960 50.000 0.00 0.00 0.00 4.96
4294 4574 2.304761 TCACCACAGAAATCTACACCCC 59.695 50.000 0.00 0.00 0.00 4.95
4295 4575 3.695830 TCACCACAGAAATCTACACCC 57.304 47.619 0.00 0.00 0.00 4.61
4296 4576 5.003804 ACAATCACCACAGAAATCTACACC 58.996 41.667 0.00 0.00 0.00 4.16
4297 4577 6.313905 CCTACAATCACCACAGAAATCTACAC 59.686 42.308 0.00 0.00 0.00 2.90
4298 4578 6.406370 CCTACAATCACCACAGAAATCTACA 58.594 40.000 0.00 0.00 0.00 2.74
4299 4579 5.294552 GCCTACAATCACCACAGAAATCTAC 59.705 44.000 0.00 0.00 0.00 2.59
4300 4580 5.189736 AGCCTACAATCACCACAGAAATCTA 59.810 40.000 0.00 0.00 0.00 1.98
4301 4581 4.018960 AGCCTACAATCACCACAGAAATCT 60.019 41.667 0.00 0.00 0.00 2.40
4302 4582 4.265073 AGCCTACAATCACCACAGAAATC 58.735 43.478 0.00 0.00 0.00 2.17
4303 4583 4.307032 AGCCTACAATCACCACAGAAAT 57.693 40.909 0.00 0.00 0.00 2.17
4304 4584 3.788227 AGCCTACAATCACCACAGAAA 57.212 42.857 0.00 0.00 0.00 2.52
4305 4585 3.788227 AAGCCTACAATCACCACAGAA 57.212 42.857 0.00 0.00 0.00 3.02
4306 4586 3.674997 GAAAGCCTACAATCACCACAGA 58.325 45.455 0.00 0.00 0.00 3.41
4307 4587 2.416547 CGAAAGCCTACAATCACCACAG 59.583 50.000 0.00 0.00 0.00 3.66
4308 4588 2.422597 CGAAAGCCTACAATCACCACA 58.577 47.619 0.00 0.00 0.00 4.17
4309 4589 1.737793 CCGAAAGCCTACAATCACCAC 59.262 52.381 0.00 0.00 0.00 4.16
4310 4590 1.349688 ACCGAAAGCCTACAATCACCA 59.650 47.619 0.00 0.00 0.00 4.17
4311 4591 1.737793 CACCGAAAGCCTACAATCACC 59.262 52.381 0.00 0.00 0.00 4.02
4312 4592 2.695359 TCACCGAAAGCCTACAATCAC 58.305 47.619 0.00 0.00 0.00 3.06
4313 4593 3.410631 TTCACCGAAAGCCTACAATCA 57.589 42.857 0.00 0.00 0.00 2.57
4314 4594 4.759516 TTTTCACCGAAAGCCTACAATC 57.240 40.909 0.00 0.00 32.93 2.67
4315 4595 5.722021 AATTTTCACCGAAAGCCTACAAT 57.278 34.783 0.00 0.00 32.93 2.71
4316 4596 5.508320 GGAAATTTTCACCGAAAGCCTACAA 60.508 40.000 11.09 0.00 32.93 2.41
4317 4597 4.022676 GGAAATTTTCACCGAAAGCCTACA 60.023 41.667 11.09 0.00 32.93 2.74
4318 4598 4.217767 AGGAAATTTTCACCGAAAGCCTAC 59.782 41.667 11.09 0.00 32.93 3.18
4319 4599 4.217550 CAGGAAATTTTCACCGAAAGCCTA 59.782 41.667 11.09 0.00 32.93 3.93
4320 4600 3.005791 CAGGAAATTTTCACCGAAAGCCT 59.994 43.478 11.09 0.00 32.93 4.58
4321 4601 3.005367 TCAGGAAATTTTCACCGAAAGCC 59.995 43.478 11.09 0.00 32.93 4.35
4322 4602 4.237349 TCAGGAAATTTTCACCGAAAGC 57.763 40.909 11.09 0.00 32.93 3.51
4323 4603 5.587289 TGTTCAGGAAATTTTCACCGAAAG 58.413 37.500 11.09 0.00 32.93 2.62
4324 4604 5.584253 TGTTCAGGAAATTTTCACCGAAA 57.416 34.783 11.09 0.00 0.00 3.46
4325 4605 5.527951 CATGTTCAGGAAATTTTCACCGAA 58.472 37.500 11.09 7.11 0.00 4.30
4326 4606 4.558496 GCATGTTCAGGAAATTTTCACCGA 60.558 41.667 11.09 1.68 0.00 4.69
4327 4607 3.674753 GCATGTTCAGGAAATTTTCACCG 59.325 43.478 11.09 0.00 0.00 4.94
4328 4608 4.886579 AGCATGTTCAGGAAATTTTCACC 58.113 39.130 11.09 0.00 0.00 4.02
4329 4609 5.333568 GCAAGCATGTTCAGGAAATTTTCAC 60.334 40.000 11.09 1.64 0.00 3.18
4330 4610 4.751098 GCAAGCATGTTCAGGAAATTTTCA 59.249 37.500 11.09 0.00 0.00 2.69
4331 4611 4.992951 AGCAAGCATGTTCAGGAAATTTTC 59.007 37.500 0.24 0.24 0.00 2.29
4332 4612 4.753107 CAGCAAGCATGTTCAGGAAATTTT 59.247 37.500 0.00 0.00 0.00 1.82
4333 4613 4.039488 TCAGCAAGCATGTTCAGGAAATTT 59.961 37.500 0.00 0.00 0.00 1.82
4334 4614 3.575256 TCAGCAAGCATGTTCAGGAAATT 59.425 39.130 0.00 0.00 0.00 1.82
4335 4615 3.159472 TCAGCAAGCATGTTCAGGAAAT 58.841 40.909 0.00 0.00 0.00 2.17
4336 4616 2.585330 TCAGCAAGCATGTTCAGGAAA 58.415 42.857 0.00 0.00 0.00 3.13
4337 4617 2.275134 TCAGCAAGCATGTTCAGGAA 57.725 45.000 0.00 0.00 0.00 3.36
4338 4618 2.502142 ATCAGCAAGCATGTTCAGGA 57.498 45.000 0.00 0.00 0.00 3.86
4339 4619 2.753452 AGAATCAGCAAGCATGTTCAGG 59.247 45.455 0.00 0.00 0.00 3.86
4340 4620 3.190744 ACAGAATCAGCAAGCATGTTCAG 59.809 43.478 0.00 0.00 0.00 3.02
4341 4621 3.057806 CACAGAATCAGCAAGCATGTTCA 60.058 43.478 0.00 0.00 0.00 3.18
4342 4622 3.499048 CACAGAATCAGCAAGCATGTTC 58.501 45.455 0.00 0.00 0.00 3.18
4343 4623 2.352421 GCACAGAATCAGCAAGCATGTT 60.352 45.455 0.00 0.00 0.00 2.71
4344 4624 1.201647 GCACAGAATCAGCAAGCATGT 59.798 47.619 0.00 0.00 0.00 3.21
4345 4625 1.201414 TGCACAGAATCAGCAAGCATG 59.799 47.619 0.00 0.00 34.97 4.06
4346 4626 1.541379 TGCACAGAATCAGCAAGCAT 58.459 45.000 0.00 0.00 34.97 3.79
4347 4627 1.201414 CATGCACAGAATCAGCAAGCA 59.799 47.619 0.00 0.00 42.15 3.91
4348 4628 1.201647 ACATGCACAGAATCAGCAAGC 59.798 47.619 0.00 0.00 42.15 4.01
4349 4629 2.228103 ACACATGCACAGAATCAGCAAG 59.772 45.455 0.00 0.00 42.15 4.01
4350 4630 2.227149 GACACATGCACAGAATCAGCAA 59.773 45.455 0.00 0.00 42.15 3.91
4351 4631 1.808343 GACACATGCACAGAATCAGCA 59.192 47.619 0.00 0.00 43.14 4.41
4352 4632 2.082231 AGACACATGCACAGAATCAGC 58.918 47.619 0.00 0.00 0.00 4.26
4353 4633 3.309138 GCTAGACACATGCACAGAATCAG 59.691 47.826 0.00 0.00 0.00 2.90
4354 4634 3.264947 GCTAGACACATGCACAGAATCA 58.735 45.455 0.00 0.00 0.00 2.57
4355 4635 3.264947 TGCTAGACACATGCACAGAATC 58.735 45.455 0.00 0.00 0.00 2.52
4356 4636 3.339253 TGCTAGACACATGCACAGAAT 57.661 42.857 0.00 0.00 0.00 2.40
4357 4637 2.837532 TGCTAGACACATGCACAGAA 57.162 45.000 0.00 0.00 0.00 3.02
4358 4638 2.837532 TTGCTAGACACATGCACAGA 57.162 45.000 0.00 0.00 36.37 3.41
4359 4639 4.155462 AGAATTTGCTAGACACATGCACAG 59.845 41.667 0.00 0.00 36.37 3.66
4360 4640 4.074259 AGAATTTGCTAGACACATGCACA 58.926 39.130 0.00 0.00 36.37 4.57
4361 4641 4.083110 ACAGAATTTGCTAGACACATGCAC 60.083 41.667 0.00 0.00 36.37 4.57
4362 4642 4.074259 ACAGAATTTGCTAGACACATGCA 58.926 39.130 0.00 0.00 34.69 3.96
4363 4643 4.691860 ACAGAATTTGCTAGACACATGC 57.308 40.909 0.00 0.00 0.00 4.06
4364 4644 6.128553 ACGTAACAGAATTTGCTAGACACATG 60.129 38.462 0.00 0.00 0.00 3.21
4365 4645 5.932303 ACGTAACAGAATTTGCTAGACACAT 59.068 36.000 0.00 0.00 0.00 3.21
4366 4646 5.176774 CACGTAACAGAATTTGCTAGACACA 59.823 40.000 0.00 0.00 0.00 3.72
4367 4647 5.609088 CACGTAACAGAATTTGCTAGACAC 58.391 41.667 0.00 0.00 0.00 3.67
4368 4648 5.839262 CACGTAACAGAATTTGCTAGACA 57.161 39.130 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.