Multiple sequence alignment - TraesCS4A01G102600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G102600 chr4A 100.000 5108 0 0 1 5108 115300906 115306013 0.000000e+00 9433
1 TraesCS4A01G102600 chr4A 93.874 1110 56 5 1913 3011 626062812 626061704 0.000000e+00 1663
2 TraesCS4A01G102600 chr4A 84.124 611 75 6 4156 4746 161603599 161604207 5.740000e-159 571
3 TraesCS4A01G102600 chr4A 84.058 621 66 16 4156 4754 94750380 94749771 7.420000e-158 568
4 TraesCS4A01G102600 chr4A 83.713 614 79 6 4156 4749 113631302 113631914 1.240000e-155 560
5 TraesCS4A01G102600 chr4A 97.531 81 2 0 3078 3158 115303941 115304021 6.900000e-29 139
6 TraesCS4A01G102600 chr4A 97.531 81 2 0 3036 3116 115303983 115304063 6.900000e-29 139
7 TraesCS4A01G102600 chr4D 91.160 2025 134 14 3127 5108 349563227 349561205 0.000000e+00 2706
8 TraesCS4A01G102600 chr4D 93.622 1176 34 11 779 1913 349564556 349563381 0.000000e+00 1718
9 TraesCS4A01G102600 chr4D 82.353 612 77 5 4156 4749 296979791 296980389 2.120000e-138 503
10 TraesCS4A01G102600 chr4D 80.297 472 70 18 2553 3011 140902439 140901978 8.190000e-88 335
11 TraesCS4A01G102600 chr4D 82.979 376 48 12 4744 5107 255313415 255313786 4.930000e-85 326
12 TraesCS4A01G102600 chr4B 92.134 1729 112 13 3078 4787 432787824 432786101 0.000000e+00 2418
13 TraesCS4A01G102600 chr4B 92.656 1171 49 11 780 1913 432789017 432787847 0.000000e+00 1652
14 TraesCS4A01G102600 chr4B 83.495 618 77 11 4156 4752 178348864 178349477 2.080000e-153 553
15 TraesCS4A01G102600 chr4B 87.363 364 39 3 4750 5107 369338406 369338044 1.320000e-110 411
16 TraesCS4A01G102600 chr4B 83.155 374 49 7 4747 5107 198446278 198445906 3.810000e-86 329
17 TraesCS4A01G102600 chr4B 94.286 105 6 0 3011 3115 432787849 432787745 1.470000e-35 161
18 TraesCS4A01G102600 chr4B 82.222 180 18 9 779 944 432789990 432789811 5.330000e-30 143
19 TraesCS4A01G102600 chr5A 94.144 1110 53 6 1913 3011 345362506 345363614 0.000000e+00 1679
20 TraesCS4A01G102600 chr5A 92.652 1116 69 4 1911 3015 435249295 435248182 0.000000e+00 1594
21 TraesCS4A01G102600 chr1A 93.728 1116 57 5 1909 3013 61035713 61034600 0.000000e+00 1661
22 TraesCS4A01G102600 chr1A 92.569 1117 65 8 1911 3016 325031754 325030645 0.000000e+00 1587
23 TraesCS4A01G102600 chr1A 92.683 410 26 3 2606 3013 516697865 516697458 5.700000e-164 588
24 TraesCS4A01G102600 chr7A 94.821 1062 46 3 1963 3016 26978904 26979964 0.000000e+00 1648
25 TraesCS4A01G102600 chr7A 92.870 1108 68 5 1913 3011 669744680 669743575 0.000000e+00 1598
26 TraesCS4A01G102600 chr7A 81.894 359 43 9 4413 4754 368132790 368133143 3.010000e-72 283
27 TraesCS4A01G102600 chr2A 93.543 1115 58 5 1910 3013 38223365 38224476 0.000000e+00 1648
28 TraesCS4A01G102600 chr2A 96.552 725 20 3 1 723 592840821 592840100 0.000000e+00 1195
29 TraesCS4A01G102600 chr2A 93.432 746 29 6 1 745 62101768 62102494 0.000000e+00 1088
30 TraesCS4A01G102600 chr2A 83.861 316 32 15 1 312 55114155 55114455 3.010000e-72 283
31 TraesCS4A01G102600 chr2A 87.805 205 22 2 551 754 55115008 55115210 2.380000e-58 237
32 TraesCS4A01G102600 chr6A 92.301 1117 71 6 1911 3016 593936764 593937876 0.000000e+00 1572
33 TraesCS4A01G102600 chr6A 84.568 324 28 8 1 312 418617713 418618026 8.310000e-78 302
34 TraesCS4A01G102600 chr6A 79.009 424 83 6 1114 1534 599831943 599831523 8.370000e-73 285
35 TraesCS4A01G102600 chr6A 85.030 167 18 7 582 744 250689394 250689557 4.090000e-36 163
36 TraesCS4A01G102600 chr5D 86.951 728 61 13 1 717 108226690 108227394 0.000000e+00 787
37 TraesCS4A01G102600 chr5D 79.167 456 51 25 2557 3011 157690020 157689608 5.040000e-70 276
38 TraesCS4A01G102600 chr6D 85.155 613 70 11 4156 4749 165407916 165407306 4.370000e-170 608
39 TraesCS4A01G102600 chr6D 83.442 616 83 12 4156 4754 313332458 313331845 5.780000e-154 555
40 TraesCS4A01G102600 chr1D 84.779 611 77 10 4156 4750 280041211 280040601 2.630000e-167 599
41 TraesCS4A01G102600 chr1D 83.550 614 83 2 4156 4751 190825236 190824623 4.470000e-155 558
42 TraesCS4A01G102600 chr1D 82.700 237 35 5 2564 2798 359779870 359779638 6.700000e-49 206
43 TraesCS4A01G102600 chr1D 83.673 147 17 5 2651 2795 372517467 372517608 1.150000e-26 132
44 TraesCS4A01G102600 chr5B 84.330 619 75 8 4156 4756 187686588 187687202 2.050000e-163 586
45 TraesCS4A01G102600 chr5B 83.762 622 74 11 4150 4746 247647476 247648095 9.600000e-157 564
46 TraesCS4A01G102600 chr5B 87.069 232 26 3 519 747 100825674 100825904 5.070000e-65 259
47 TraesCS4A01G102600 chr3A 90.042 472 18 5 290 757 728357478 728357032 7.370000e-163 584
48 TraesCS4A01G102600 chr3A 94.961 258 12 1 1 258 728357731 728357475 2.210000e-108 403
49 TraesCS4A01G102600 chr3A 80.157 383 76 0 3186 3568 427091748 427091366 2.330000e-73 287
50 TraesCS4A01G102600 chr3A 83.025 324 33 9 1 312 718012498 718012185 1.810000e-69 274
51 TraesCS4A01G102600 chr3A 81.818 198 29 7 555 748 369227243 369227049 5.290000e-35 159
52 TraesCS4A01G102600 chr3B 82.923 609 83 11 4160 4749 538668946 538669552 3.500000e-146 529
53 TraesCS4A01G102600 chr3B 86.133 375 40 7 4744 5108 344469937 344470309 1.330000e-105 394
54 TraesCS4A01G102600 chr3B 80.662 393 76 0 3176 3568 413970528 413970920 6.430000e-79 305
55 TraesCS4A01G102600 chr3B 77.600 375 78 6 3206 3577 828420997 828420626 6.660000e-54 222
56 TraesCS4A01G102600 chr2D 83.853 545 70 2 4156 4682 305578549 305579093 2.120000e-138 503
57 TraesCS4A01G102600 chr7B 81.596 614 79 10 4156 4749 183559027 183558428 1.290000e-130 477
58 TraesCS4A01G102600 chr7B 89.643 280 27 2 4476 4754 357622692 357622970 6.290000e-94 355
59 TraesCS4A01G102600 chr3D 87.534 369 37 4 4747 5107 455346291 455345924 7.910000e-113 418
60 TraesCS4A01G102600 chr3D 84.043 376 43 14 4744 5107 379610189 379610559 3.790000e-91 346
61 TraesCS4A01G102600 chr1B 87.027 370 34 6 4750 5107 401436698 401436331 6.160000e-109 405
62 TraesCS4A01G102600 chr1B 83.967 368 43 12 4747 5107 195108206 195107848 6.340000e-89 339
63 TraesCS4A01G102600 chr1B 96.040 202 6 2 1 202 634188094 634187895 1.370000e-85 327
64 TraesCS4A01G102600 chr1B 83.385 325 31 10 1 312 311137441 311137127 3.890000e-71 279
65 TraesCS4A01G102600 chr1B 91.124 169 9 3 504 670 634187101 634186937 1.850000e-54 224
66 TraesCS4A01G102600 chr7D 86.686 338 35 5 4747 5075 416601518 416601182 2.910000e-97 366
67 TraesCS4A01G102600 chr7D 88.929 280 27 3 4476 4754 310960139 310960415 4.900000e-90 342
68 TraesCS4A01G102600 chr6B 79.681 251 49 2 1285 1534 689033184 689032935 4.060000e-41 180


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G102600 chr4A 115300906 115306013 5107 False 3237.0 9433 98.3540 1 5108 3 chr4A.!!$F3 5107
1 TraesCS4A01G102600 chr4A 626061704 626062812 1108 True 1663.0 1663 93.8740 1913 3011 1 chr4A.!!$R2 1098
2 TraesCS4A01G102600 chr4A 161603599 161604207 608 False 571.0 571 84.1240 4156 4746 1 chr4A.!!$F2 590
3 TraesCS4A01G102600 chr4A 94749771 94750380 609 True 568.0 568 84.0580 4156 4754 1 chr4A.!!$R1 598
4 TraesCS4A01G102600 chr4A 113631302 113631914 612 False 560.0 560 83.7130 4156 4749 1 chr4A.!!$F1 593
5 TraesCS4A01G102600 chr4D 349561205 349564556 3351 True 2212.0 2706 92.3910 779 5108 2 chr4D.!!$R2 4329
6 TraesCS4A01G102600 chr4D 296979791 296980389 598 False 503.0 503 82.3530 4156 4749 1 chr4D.!!$F2 593
7 TraesCS4A01G102600 chr4B 432786101 432789990 3889 True 1093.5 2418 90.3245 779 4787 4 chr4B.!!$R3 4008
8 TraesCS4A01G102600 chr4B 178348864 178349477 613 False 553.0 553 83.4950 4156 4752 1 chr4B.!!$F1 596
9 TraesCS4A01G102600 chr5A 345362506 345363614 1108 False 1679.0 1679 94.1440 1913 3011 1 chr5A.!!$F1 1098
10 TraesCS4A01G102600 chr5A 435248182 435249295 1113 True 1594.0 1594 92.6520 1911 3015 1 chr5A.!!$R1 1104
11 TraesCS4A01G102600 chr1A 61034600 61035713 1113 True 1661.0 1661 93.7280 1909 3013 1 chr1A.!!$R1 1104
12 TraesCS4A01G102600 chr1A 325030645 325031754 1109 True 1587.0 1587 92.5690 1911 3016 1 chr1A.!!$R2 1105
13 TraesCS4A01G102600 chr7A 26978904 26979964 1060 False 1648.0 1648 94.8210 1963 3016 1 chr7A.!!$F1 1053
14 TraesCS4A01G102600 chr7A 669743575 669744680 1105 True 1598.0 1598 92.8700 1913 3011 1 chr7A.!!$R1 1098
15 TraesCS4A01G102600 chr2A 38223365 38224476 1111 False 1648.0 1648 93.5430 1910 3013 1 chr2A.!!$F1 1103
16 TraesCS4A01G102600 chr2A 592840100 592840821 721 True 1195.0 1195 96.5520 1 723 1 chr2A.!!$R1 722
17 TraesCS4A01G102600 chr2A 62101768 62102494 726 False 1088.0 1088 93.4320 1 745 1 chr2A.!!$F2 744
18 TraesCS4A01G102600 chr2A 55114155 55115210 1055 False 260.0 283 85.8330 1 754 2 chr2A.!!$F3 753
19 TraesCS4A01G102600 chr6A 593936764 593937876 1112 False 1572.0 1572 92.3010 1911 3016 1 chr6A.!!$F3 1105
20 TraesCS4A01G102600 chr5D 108226690 108227394 704 False 787.0 787 86.9510 1 717 1 chr5D.!!$F1 716
21 TraesCS4A01G102600 chr6D 165407306 165407916 610 True 608.0 608 85.1550 4156 4749 1 chr6D.!!$R1 593
22 TraesCS4A01G102600 chr6D 313331845 313332458 613 True 555.0 555 83.4420 4156 4754 1 chr6D.!!$R2 598
23 TraesCS4A01G102600 chr1D 280040601 280041211 610 True 599.0 599 84.7790 4156 4750 1 chr1D.!!$R2 594
24 TraesCS4A01G102600 chr1D 190824623 190825236 613 True 558.0 558 83.5500 4156 4751 1 chr1D.!!$R1 595
25 TraesCS4A01G102600 chr5B 187686588 187687202 614 False 586.0 586 84.3300 4156 4756 1 chr5B.!!$F2 600
26 TraesCS4A01G102600 chr5B 247647476 247648095 619 False 564.0 564 83.7620 4150 4746 1 chr5B.!!$F3 596
27 TraesCS4A01G102600 chr3A 728357032 728357731 699 True 493.5 584 92.5015 1 757 2 chr3A.!!$R4 756
28 TraesCS4A01G102600 chr3B 538668946 538669552 606 False 529.0 529 82.9230 4160 4749 1 chr3B.!!$F3 589
29 TraesCS4A01G102600 chr2D 305578549 305579093 544 False 503.0 503 83.8530 4156 4682 1 chr2D.!!$F1 526
30 TraesCS4A01G102600 chr7B 183558428 183559027 599 True 477.0 477 81.5960 4156 4749 1 chr7B.!!$R1 593
31 TraesCS4A01G102600 chr1B 634186937 634188094 1157 True 275.5 327 93.5820 1 670 2 chr1B.!!$R4 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
776 1726 0.413434 TGGGGACAGAGATCCAGTGA 59.587 55.0 0.00 0.00 40.96 3.41 F
1709 3679 0.240145 CAGTGAAGGTACGCACGAGA 59.760 55.0 0.00 0.00 41.83 4.04 F
1877 3847 0.320374 TCCCGGCTACTTGTGAGTTG 59.680 55.0 0.00 0.00 37.33 3.16 F
2036 4009 0.387878 CAAATTAAAGCGCGCCCACA 60.388 50.0 30.33 10.66 0.00 4.17 F
3485 5566 0.322816 AAGCATGCATCCGAAGTGGT 60.323 50.0 21.98 0.00 39.52 4.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1738 3708 0.107214 GGGAAATGACATCTCCGGCA 60.107 55.0 0.00 0.00 0.00 5.69 R
2813 4810 0.307760 GCGCCTATAAATTGCAGCGT 59.692 50.0 13.17 0.00 45.00 5.07 R
3485 5566 0.543410 TCCTCCCTTGCACGGTCTTA 60.543 55.0 8.63 0.00 0.00 2.10 R
3940 6021 0.764271 TTCTGGCCGATGCATATCCA 59.236 50.0 0.00 6.53 40.13 3.41 R
4538 6642 0.675633 AATTATGCAGGCCCAATCGC 59.324 50.0 0.00 0.00 0.00 4.58 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 752 8.327941 ACAATAGTACAGAACTACTTACACGA 57.672 34.615 0.00 0.00 43.47 4.35
207 761 6.577800 CAGAACTACTTACACGACAACTACAG 59.422 42.308 0.00 0.00 0.00 2.74
252 821 6.930731 TGAAACATTACCTGAATTTAAGCCC 58.069 36.000 0.00 0.00 0.00 5.19
253 822 6.723977 TGAAACATTACCTGAATTTAAGCCCT 59.276 34.615 0.00 0.00 0.00 5.19
254 823 7.891183 TGAAACATTACCTGAATTTAAGCCCTA 59.109 33.333 0.00 0.00 0.00 3.53
255 824 8.658840 AAACATTACCTGAATTTAAGCCCTAA 57.341 30.769 0.00 0.00 0.00 2.69
256 825 8.658840 AACATTACCTGAATTTAAGCCCTAAA 57.341 30.769 0.00 0.00 34.00 1.85
257 826 8.838649 ACATTACCTGAATTTAAGCCCTAAAT 57.161 30.769 0.00 0.00 41.16 1.40
258 827 8.695456 ACATTACCTGAATTTAAGCCCTAAATG 58.305 33.333 2.94 0.00 38.94 2.32
259 828 7.654022 TTACCTGAATTTAAGCCCTAAATGG 57.346 36.000 2.94 3.43 38.94 3.16
280 857 7.807977 ATGGCTAAATCTATTCGTTCATTGT 57.192 32.000 0.00 0.00 0.00 2.71
470 1419 1.901650 CTCGGCGGCTGTTGAGAAAC 61.902 60.000 7.21 0.00 0.00 2.78
586 1535 0.672889 TGTCGTACGGTTGCCTGTTA 59.327 50.000 16.52 0.00 0.00 2.41
688 1638 0.742281 ATTGATCGAGCGCTGCTGTT 60.742 50.000 18.48 0.00 39.88 3.16
748 1698 4.767255 GGTGCCTCCGCCACTGAG 62.767 72.222 0.00 0.00 41.40 3.35
760 1710 2.665000 ACTGAGCACGGTGATGGG 59.335 61.111 13.29 3.02 33.97 4.00
761 1711 2.124983 CTGAGCACGGTGATGGGG 60.125 66.667 13.29 0.00 0.00 4.96
762 1712 2.606213 TGAGCACGGTGATGGGGA 60.606 61.111 13.29 0.00 0.00 4.81
763 1713 2.125106 GAGCACGGTGATGGGGAC 60.125 66.667 13.29 0.00 0.00 4.46
775 1725 2.996985 TGGGGACAGAGATCCAGTG 58.003 57.895 0.00 0.00 40.96 3.66
776 1726 0.413434 TGGGGACAGAGATCCAGTGA 59.587 55.000 0.00 0.00 40.96 3.41
777 1727 0.827368 GGGGACAGAGATCCAGTGAC 59.173 60.000 0.00 0.00 40.96 3.67
814 1764 2.076863 GTGTGTCTTTTCGCCATAGCT 58.923 47.619 0.00 0.00 36.60 3.32
862 1825 3.777465 TGTCGTACTGATAGTGAAGGC 57.223 47.619 0.00 0.00 0.00 4.35
879 1842 5.767168 GTGAAGGCCATAGCATTATTCTCTT 59.233 40.000 5.01 0.00 44.45 2.85
880 1843 6.936900 GTGAAGGCCATAGCATTATTCTCTTA 59.063 38.462 5.01 0.00 44.45 2.10
881 1844 6.936900 TGAAGGCCATAGCATTATTCTCTTAC 59.063 38.462 5.01 0.00 44.45 2.34
926 1901 5.686124 GCAGCTCCATCCATCTATATAACCC 60.686 48.000 0.00 0.00 0.00 4.11
935 1910 5.665812 TCCATCTATATAACCCCATGCCTAC 59.334 44.000 0.00 0.00 0.00 3.18
952 2916 0.948623 TACACCGTGCAGCATCACAC 60.949 55.000 0.00 0.00 36.80 3.82
1020 2984 1.878953 TGGTTCTTGGAGCGTTCTTC 58.121 50.000 0.00 0.00 0.00 2.87
1449 3413 2.042831 GTGGAAGCTGCTCGCCAAT 61.043 57.895 21.18 0.00 40.39 3.16
1695 3665 3.371063 GTCCGTCGGCTCCAGTGA 61.371 66.667 6.34 0.00 0.00 3.41
1709 3679 0.240145 CAGTGAAGGTACGCACGAGA 59.760 55.000 0.00 0.00 41.83 4.04
1738 3708 1.179174 GGCCGGAGCTCAAAAACCTT 61.179 55.000 17.19 0.00 39.73 3.50
1877 3847 0.320374 TCCCGGCTACTTGTGAGTTG 59.680 55.000 0.00 0.00 37.33 3.16
2036 4009 0.387878 CAAATTAAAGCGCGCCCACA 60.388 50.000 30.33 10.66 0.00 4.17
2147 4120 9.539825 CGTAGATAGTTTTCCTACTACTACTCA 57.460 37.037 0.00 0.00 35.66 3.41
2155 4128 5.627182 TCCTACTACTACTCATCCGACTT 57.373 43.478 0.00 0.00 0.00 3.01
2202 4182 1.226717 GAGCGTAGGCGTCAAGGAG 60.227 63.158 1.05 0.00 46.35 3.69
2203 4183 1.935327 GAGCGTAGGCGTCAAGGAGT 61.935 60.000 1.05 0.00 46.35 3.85
2243 4223 1.109920 GGAGGACGCATCTCCTAGCA 61.110 60.000 10.81 0.00 45.46 3.49
2269 4249 2.389962 TGTATTTAGCGACCGCCTTT 57.610 45.000 11.03 0.00 43.17 3.11
2287 4267 2.686956 TTCGCGTTCGCTTGTCCTCA 62.687 55.000 14.92 0.00 35.26 3.86
2352 4332 2.154462 CATCTGGGCGAAGAACTGTTT 58.846 47.619 0.00 0.00 0.00 2.83
2608 4589 2.280524 TGGGCGGTGTCGAAAGTG 60.281 61.111 0.00 0.00 39.00 3.16
2811 4808 4.292178 GATGGAGAGAGCGGCGGG 62.292 72.222 9.78 0.00 0.00 6.13
2907 4904 3.784412 CAATCGTTTCCCGCGCGT 61.784 61.111 29.95 3.84 36.19 6.01
2963 4960 3.327754 CCGCGCGCGCTATAAAGT 61.328 61.111 45.97 0.00 39.32 2.66
2964 4961 2.618839 CGCGCGCGCTATAAAGTT 59.381 55.556 45.97 0.00 39.32 2.66
3056 5055 9.835389 ACAGTTACACTTGTAATAACCTAACAA 57.165 29.630 5.16 0.00 41.85 2.83
3067 5066 9.802039 TGTAATAACCTAACAAGGAACATTCTT 57.198 29.630 0.00 0.00 0.00 2.52
3079 5078 8.782533 CAAGGAACATTCTTTGTAACAAGTAC 57.217 34.615 8.01 0.00 38.85 2.73
3081 5080 7.927048 AGGAACATTCTTTGTAACAAGTACAC 58.073 34.615 0.00 0.00 42.56 2.90
3082 5081 7.773690 AGGAACATTCTTTGTAACAAGTACACT 59.226 33.333 0.00 0.00 42.56 3.55
3083 5082 8.403236 GGAACATTCTTTGTAACAAGTACACTT 58.597 33.333 0.00 0.00 42.56 3.16
3104 5103 9.398538 ACACTTGTAATAACTTAACAAGGAACA 57.601 29.630 16.27 0.00 41.25 3.18
3121 5120 8.782533 CAAGGAACATTCTTTGTAACAAGTAC 57.217 34.615 8.01 0.00 38.85 2.73
3122 5121 8.402472 CAAGGAACATTCTTTGTAACAAGTACA 58.598 33.333 8.01 0.00 41.10 2.90
3123 5122 7.927048 AGGAACATTCTTTGTAACAAGTACAC 58.073 34.615 0.00 0.00 42.56 2.90
3124 5123 7.773690 AGGAACATTCTTTGTAACAAGTACACT 59.226 33.333 0.00 0.00 42.56 3.55
3170 5251 1.529226 TTGTAACGGGAAGTGCATGG 58.471 50.000 0.00 0.00 0.00 3.66
3212 5293 4.551702 ACCCCAAACAATAAAAGGATGC 57.448 40.909 0.00 0.00 0.00 3.91
3220 5301 6.610075 AACAATAAAAGGATGCATCAGGTT 57.390 33.333 27.25 18.27 0.00 3.50
3223 5304 8.310122 ACAATAAAAGGATGCATCAGGTTAAT 57.690 30.769 27.25 11.87 0.00 1.40
3299 5380 3.312736 AGGAAGGAGAAAGCACCAAAA 57.687 42.857 0.00 0.00 0.00 2.44
3301 5382 3.384789 AGGAAGGAGAAAGCACCAAAAAC 59.615 43.478 0.00 0.00 0.00 2.43
3344 5425 2.224606 AGTCAAACATGAGGCACACAG 58.775 47.619 0.00 0.00 29.06 3.66
3485 5566 0.322816 AAGCATGCATCCGAAGTGGT 60.323 50.000 21.98 0.00 39.52 4.16
3487 5568 1.065491 AGCATGCATCCGAAGTGGTAA 60.065 47.619 21.98 0.00 39.52 2.85
3531 5612 7.375834 GTCCTAGGTTTATTTGGGAAAAACAG 58.624 38.462 9.08 0.00 35.33 3.16
3639 5720 3.335579 ACACCAACTTTTCTATCGGAGC 58.664 45.455 0.00 0.00 0.00 4.70
3642 5723 4.567159 CACCAACTTTTCTATCGGAGCTAC 59.433 45.833 0.00 0.00 0.00 3.58
3645 5726 6.097839 ACCAACTTTTCTATCGGAGCTACATA 59.902 38.462 0.00 0.00 0.00 2.29
3648 5729 5.597182 ACTTTTCTATCGGAGCTACATACCA 59.403 40.000 0.00 0.00 0.00 3.25
3777 5858 3.260884 AGGTGCTAATCGGAGACAAAAGA 59.739 43.478 0.00 0.00 42.51 2.52
3842 5923 1.005805 CCATGACCCTGACATTTGGGA 59.994 52.381 5.28 0.00 46.15 4.37
3852 5933 3.680490 TGACATTTGGGAAAGCGATGTA 58.320 40.909 0.00 0.00 31.59 2.29
3876 5957 2.224769 TGAATTCAAGCCGGAGAGGTTT 60.225 45.455 5.05 0.00 44.78 3.27
4023 6104 1.782569 CAACGTTTCGACTTCGTGCTA 59.217 47.619 0.00 0.00 40.80 3.49
4227 6312 4.644103 TCCTAGTTGCCGTAATACAGAC 57.356 45.455 0.00 0.00 0.00 3.51
4230 6315 5.829391 TCCTAGTTGCCGTAATACAGACATA 59.171 40.000 0.00 0.00 0.00 2.29
4302 6388 8.890472 TGGATTATCAGTAATAGGCCAATTAGT 58.110 33.333 5.01 0.00 30.75 2.24
4314 6400 6.253946 AGGCCAATTAGTCTGCTTATTAGT 57.746 37.500 5.01 0.00 0.00 2.24
4337 6423 4.576873 TGTTTTCTATTGCAGACGGTTTCA 59.423 37.500 0.00 0.00 31.12 2.69
4378 6464 3.625853 TGAACTCAAACAACCCACATGA 58.374 40.909 0.00 0.00 0.00 3.07
4379 6465 3.380004 TGAACTCAAACAACCCACATGAC 59.620 43.478 0.00 0.00 0.00 3.06
4392 6478 6.875972 ACCCACATGACTTCTAGAAAGTAT 57.124 37.500 6.63 0.00 0.00 2.12
4432 6518 0.667487 ATCACACACGACTTCAGCCG 60.667 55.000 0.00 0.00 0.00 5.52
4513 6617 5.592104 AAACGTTTTTCTGGGATTCACTT 57.408 34.783 7.96 0.00 0.00 3.16
4538 6642 4.750098 GTGGGATGTACATATGAACGGAAG 59.250 45.833 8.71 0.00 0.00 3.46
4562 6666 1.766494 TGGGCCTGCATAATTGTCTG 58.234 50.000 4.53 0.00 0.00 3.51
4573 6677 1.091771 AATTGTCTGCGATGCCTCGG 61.092 55.000 13.37 0.00 45.15 4.63
4640 6744 1.108776 CTATCCCCGACGGTTTCTGA 58.891 55.000 13.94 1.59 0.00 3.27
4659 6769 2.183679 GAGTCATGTGAGAAGGACCCT 58.816 52.381 0.00 0.00 0.00 4.34
4762 6873 3.738281 GCACCAGTGTATGATACGCTCTT 60.738 47.826 15.22 3.33 45.75 2.85
4768 6879 5.750547 CAGTGTATGATACGCTCTTTCACAT 59.249 40.000 15.22 0.00 45.75 3.21
4802 6913 9.561069 TCCTTATATCTTCCTCAAAATAGCAAC 57.439 33.333 0.00 0.00 0.00 4.17
4826 6937 6.274672 ACCATACCTACCTATTATGGCATTGT 59.725 38.462 4.78 0.00 44.27 2.71
4830 6941 6.852404 ACCTACCTATTATGGCATTGTCATT 58.148 36.000 9.37 0.00 0.00 2.57
4855 6973 5.007430 CGAGATATATTGCCATGCATCTTCC 59.993 44.000 0.00 0.00 38.76 3.46
4856 6974 5.823312 AGATATATTGCCATGCATCTTCCA 58.177 37.500 0.00 0.00 38.76 3.53
4858 6976 6.546403 AGATATATTGCCATGCATCTTCCATC 59.454 38.462 0.00 0.00 38.76 3.51
4879 6997 5.959652 TCGTTCCATTATTATGACACACG 57.040 39.130 0.00 0.00 33.37 4.49
4897 7015 8.076714 GACACACGTCATCATTATCATATTGT 57.923 34.615 0.00 0.00 42.13 2.71
4937 7055 7.559590 AGCTAAAATAGTATTTGTGGCTCAG 57.440 36.000 17.20 6.80 0.00 3.35
4951 7169 1.084370 GCTCAGCCACCGTACATCAC 61.084 60.000 0.00 0.00 0.00 3.06
4998 7218 0.529992 GCACATCCTAGTACACCGCC 60.530 60.000 0.00 0.00 0.00 6.13
5100 7333 5.123186 CGTTATTTGAGCATTGTCCCAAGTA 59.877 40.000 0.00 0.00 0.00 2.24
5105 7338 3.073798 TGAGCATTGTCCCAAGTAAGGAA 59.926 43.478 0.00 0.00 34.43 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
198 752 6.072673 CGGCTTTAAGGAATTTCTGTAGTTGT 60.073 38.462 0.00 0.00 0.00 3.32
207 761 5.949735 TCAATGACGGCTTTAAGGAATTTC 58.050 37.500 0.00 0.00 0.00 2.17
254 823 8.686334 ACAATGAACGAATAGATTTAGCCATTT 58.314 29.630 0.00 0.00 0.00 2.32
255 824 8.225603 ACAATGAACGAATAGATTTAGCCATT 57.774 30.769 0.00 0.00 0.00 3.16
256 825 7.807977 ACAATGAACGAATAGATTTAGCCAT 57.192 32.000 0.00 0.00 0.00 4.40
257 826 8.201464 TCTACAATGAACGAATAGATTTAGCCA 58.799 33.333 0.00 0.00 0.00 4.75
258 827 8.589335 TCTACAATGAACGAATAGATTTAGCC 57.411 34.615 0.00 0.00 0.00 3.93
280 857 7.707624 ATCTGAAAAGTGATTTGGCAATCTA 57.292 32.000 0.00 0.00 39.81 1.98
321 1270 1.649100 AGCCTACTCCTTCCTCTCCTT 59.351 52.381 0.00 0.00 0.00 3.36
470 1419 0.108424 CTGAAACTCCTGCCTCTCCG 60.108 60.000 0.00 0.00 0.00 4.63
586 1535 7.337942 CCTTATTTTCTCAATAGTTCACAGCCT 59.662 37.037 0.00 0.00 0.00 4.58
632 1582 4.003648 ACTTGTTCGCTAGCTTGCTTTAT 58.996 39.130 17.91 0.00 0.00 1.40
745 1695 2.606213 TCCCCATCACCGTGCTCA 60.606 61.111 0.00 0.00 0.00 4.26
746 1696 2.125106 GTCCCCATCACCGTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
747 1697 2.927856 TGTCCCCATCACCGTGCT 60.928 61.111 0.00 0.00 0.00 4.40
748 1698 2.436646 CTGTCCCCATCACCGTGC 60.437 66.667 0.00 0.00 0.00 5.34
749 1699 1.219124 CTCTGTCCCCATCACCGTG 59.781 63.158 0.00 0.00 0.00 4.94
750 1700 0.325671 ATCTCTGTCCCCATCACCGT 60.326 55.000 0.00 0.00 0.00 4.83
751 1701 0.390860 GATCTCTGTCCCCATCACCG 59.609 60.000 0.00 0.00 0.00 4.94
752 1702 0.761802 GGATCTCTGTCCCCATCACC 59.238 60.000 0.00 0.00 31.82 4.02
753 1703 1.415659 CTGGATCTCTGTCCCCATCAC 59.584 57.143 0.00 0.00 37.48 3.06
754 1704 1.008815 ACTGGATCTCTGTCCCCATCA 59.991 52.381 0.00 0.00 37.48 3.07
755 1705 1.415659 CACTGGATCTCTGTCCCCATC 59.584 57.143 0.00 0.00 37.48 3.51
756 1706 1.008815 TCACTGGATCTCTGTCCCCAT 59.991 52.381 0.00 0.00 37.48 4.00
757 1707 0.413434 TCACTGGATCTCTGTCCCCA 59.587 55.000 0.00 0.00 37.48 4.96
758 1708 0.827368 GTCACTGGATCTCTGTCCCC 59.173 60.000 0.00 0.00 37.48 4.81
759 1709 1.561643 TGTCACTGGATCTCTGTCCC 58.438 55.000 0.00 0.00 37.48 4.46
760 1710 2.158986 CCATGTCACTGGATCTCTGTCC 60.159 54.545 0.00 0.00 38.69 4.02
761 1711 2.158986 CCCATGTCACTGGATCTCTGTC 60.159 54.545 0.00 0.00 38.69 3.51
762 1712 1.836166 CCCATGTCACTGGATCTCTGT 59.164 52.381 0.00 0.00 38.69 3.41
763 1713 1.836166 ACCCATGTCACTGGATCTCTG 59.164 52.381 0.00 0.00 38.69 3.35
764 1714 2.260639 ACCCATGTCACTGGATCTCT 57.739 50.000 0.00 0.00 38.69 3.10
765 1715 3.300388 TCTACCCATGTCACTGGATCTC 58.700 50.000 0.00 0.00 38.69 2.75
766 1716 3.404869 TCTACCCATGTCACTGGATCT 57.595 47.619 0.00 0.00 38.69 2.75
767 1717 4.696479 ATTCTACCCATGTCACTGGATC 57.304 45.455 0.00 0.00 38.69 3.36
768 1718 5.219739 ACTATTCTACCCATGTCACTGGAT 58.780 41.667 0.00 0.00 38.69 3.41
769 1719 4.620723 ACTATTCTACCCATGTCACTGGA 58.379 43.478 0.00 0.00 38.69 3.86
770 1720 4.651503 AGACTATTCTACCCATGTCACTGG 59.348 45.833 0.00 0.00 35.95 4.00
771 1721 5.127845 ACAGACTATTCTACCCATGTCACTG 59.872 44.000 0.00 0.00 0.00 3.66
772 1722 5.127845 CACAGACTATTCTACCCATGTCACT 59.872 44.000 0.00 0.00 0.00 3.41
773 1723 5.105310 ACACAGACTATTCTACCCATGTCAC 60.105 44.000 0.00 0.00 0.00 3.67
774 1724 5.023452 ACACAGACTATTCTACCCATGTCA 58.977 41.667 0.00 0.00 0.00 3.58
775 1725 5.105310 ACACACAGACTATTCTACCCATGTC 60.105 44.000 0.00 0.00 0.00 3.06
776 1726 4.777896 ACACACAGACTATTCTACCCATGT 59.222 41.667 0.00 0.00 0.00 3.21
777 1727 5.127845 AGACACACAGACTATTCTACCCATG 59.872 44.000 0.00 0.00 0.00 3.66
814 1764 3.903714 TCTCATCTGGACTTTGACTTGGA 59.096 43.478 0.00 0.00 0.00 3.53
849 1812 3.758755 TGCTATGGCCTTCACTATCAG 57.241 47.619 3.32 0.00 37.74 2.90
879 1842 4.392754 CACATGTGCATTTGACTAGCAGTA 59.607 41.667 13.94 0.00 39.21 2.74
880 1843 3.189910 CACATGTGCATTTGACTAGCAGT 59.810 43.478 13.94 0.00 39.21 4.40
881 1844 3.754955 CACATGTGCATTTGACTAGCAG 58.245 45.455 13.94 0.00 39.21 4.24
926 1901 2.046411 TGCACGGTGTAGGCATGG 60.046 61.111 10.24 0.00 31.58 3.66
935 1910 2.557805 GTGTGATGCTGCACGGTG 59.442 61.111 3.57 3.15 41.63 4.94
1449 3413 1.371183 CTCGTGGTTCAAGAGGCCA 59.629 57.895 5.01 0.00 36.59 5.36
1682 3652 0.108756 GTACCTTCACTGGAGCCGAC 60.109 60.000 0.00 0.00 0.00 4.79
1695 3665 1.112113 ATCCATCTCGTGCGTACCTT 58.888 50.000 0.00 0.00 0.00 3.50
1709 3679 0.773644 AGCTCCGGCCAAATATCCAT 59.226 50.000 2.24 0.00 39.73 3.41
1738 3708 0.107214 GGGAAATGACATCTCCGGCA 60.107 55.000 0.00 0.00 0.00 5.69
1937 3909 3.176578 CGACTTTTAGCGCGCGGA 61.177 61.111 33.06 15.73 0.00 5.54
2132 4105 5.627182 AGTCGGATGAGTAGTAGTAGGAA 57.373 43.478 0.00 0.00 0.00 3.36
2155 4128 4.593206 AGGACATCACTAAAACAGAGTCCA 59.407 41.667 10.47 0.00 45.05 4.02
2165 4138 3.024547 CTCCGAGGAGGACATCACTAAA 58.975 50.000 11.22 0.00 45.98 1.85
2167 4140 1.751032 GCTCCGAGGAGGACATCACTA 60.751 57.143 19.64 0.00 45.98 2.74
2202 4182 3.306134 AACTCCGACGACGAGCGAC 62.306 63.158 9.28 2.70 44.57 5.19
2203 4183 3.020026 GAACTCCGACGACGAGCGA 62.020 63.158 9.28 0.00 44.57 4.93
2243 4223 2.997986 CGGTCGCTAAATACAACCAAGT 59.002 45.455 0.00 0.00 0.00 3.16
2287 4267 2.544698 GGAGCGAGCCGACTATCGT 61.545 63.158 0.00 0.00 40.97 3.73
2333 4313 2.039084 AGAAACAGTTCTTCGCCCAGAT 59.961 45.455 0.00 0.00 41.55 2.90
2352 4332 1.663739 CCGGAAGACACCAACGAGA 59.336 57.895 0.00 0.00 0.00 4.04
2631 4628 1.154093 GTCGAGATTCGGTCGTGCA 60.154 57.895 0.00 0.00 40.88 4.57
2634 4631 1.703438 CTCCGTCGAGATTCGGTCGT 61.703 60.000 11.42 0.00 45.88 4.34
2811 4808 1.069906 CGCCTATAAATTGCAGCGTCC 60.070 52.381 4.72 0.00 38.81 4.79
2813 4810 0.307760 GCGCCTATAAATTGCAGCGT 59.692 50.000 13.17 0.00 45.00 5.07
2907 4904 2.740826 GGTGGCGCGAAACTAGCA 60.741 61.111 12.10 0.00 34.19 3.49
2990 4989 2.747460 GCATCTCCAACAGCCGCA 60.747 61.111 0.00 0.00 0.00 5.69
3045 5044 8.706322 ACAAAGAATGTTCCTTGTTAGGTTAT 57.294 30.769 4.36 0.00 38.35 1.89
3047 5046 8.410912 GTTACAAAGAATGTTCCTTGTTAGGTT 58.589 33.333 13.21 0.00 38.35 3.50
3048 5047 7.558444 TGTTACAAAGAATGTTCCTTGTTAGGT 59.442 33.333 13.21 0.00 38.35 3.08
3050 5049 9.450807 CTTGTTACAAAGAATGTTCCTTGTTAG 57.549 33.333 13.21 5.21 38.35 2.34
3051 5050 8.962679 ACTTGTTACAAAGAATGTTCCTTGTTA 58.037 29.630 13.21 4.08 38.35 2.41
3052 5051 7.836842 ACTTGTTACAAAGAATGTTCCTTGTT 58.163 30.769 13.21 1.61 38.35 2.83
3053 5052 7.404671 ACTTGTTACAAAGAATGTTCCTTGT 57.595 32.000 12.73 12.73 42.62 3.16
3054 5053 8.402472 TGTACTTGTTACAAAGAATGTTCCTTG 58.598 33.333 0.00 3.24 43.63 3.61
3055 5054 8.403236 GTGTACTTGTTACAAAGAATGTTCCTT 58.597 33.333 0.00 0.00 42.56 3.36
3056 5055 7.773690 AGTGTACTTGTTACAAAGAATGTTCCT 59.226 33.333 0.00 0.00 42.56 3.36
3078 5077 9.398538 TGTTCCTTGTTAAGTTATTACAAGTGT 57.601 29.630 19.20 0.00 36.88 3.55
3090 5089 8.962679 TGTTACAAAGAATGTTCCTTGTTAAGT 58.037 29.630 13.21 0.00 38.35 2.24
3091 5090 9.796120 TTGTTACAAAGAATGTTCCTTGTTAAG 57.204 29.630 13.21 0.00 38.35 1.85
3093 5092 8.962679 ACTTGTTACAAAGAATGTTCCTTGTTA 58.037 29.630 13.21 4.08 38.35 2.41
3094 5093 7.836842 ACTTGTTACAAAGAATGTTCCTTGTT 58.163 30.769 13.21 1.61 38.35 2.83
3095 5094 7.404671 ACTTGTTACAAAGAATGTTCCTTGT 57.595 32.000 12.73 12.73 42.62 3.16
3096 5095 8.402472 TGTACTTGTTACAAAGAATGTTCCTTG 58.598 33.333 0.00 3.24 43.63 3.61
3098 5097 7.773690 AGTGTACTTGTTACAAAGAATGTTCCT 59.226 33.333 0.00 0.00 42.56 3.36
3099 5098 7.927048 AGTGTACTTGTTACAAAGAATGTTCC 58.073 34.615 0.00 0.00 42.56 3.62
3100 5099 9.221775 CAAGTGTACTTGTTACAAAGAATGTTC 57.778 33.333 14.93 0.00 46.11 3.18
3138 5177 5.134661 TCCCGTTACAAAGAATGTTCCTTT 58.865 37.500 0.00 0.00 43.63 3.11
3170 5251 6.239036 GGGGTTGGCAAAGATCTGAAATATAC 60.239 42.308 0.00 0.00 0.00 1.47
3212 5293 6.978343 TTCAACCTCGTTATTAACCTGATG 57.022 37.500 1.04 0.00 0.00 3.07
3220 5301 7.588854 CGTAGAATCGATTCAACCTCGTTATTA 59.411 37.037 33.42 14.09 39.23 0.98
3223 5304 5.268544 CGTAGAATCGATTCAACCTCGTTA 58.731 41.667 33.42 15.78 39.23 3.18
3264 5345 6.708285 TCTCCTTCCTTTATCGCTTTAGTTT 58.292 36.000 0.00 0.00 0.00 2.66
3277 5358 3.312736 TTGGTGCTTTCTCCTTCCTTT 57.687 42.857 0.00 0.00 0.00 3.11
3299 5380 4.680171 GCAATAAGCCAAGTAAGTCGTT 57.320 40.909 0.00 0.00 37.23 3.85
3344 5425 7.457244 CCATGCTGGATTGACCATTGTCATC 62.457 48.000 0.00 1.53 45.17 2.92
3374 5455 4.445453 TCCTCGATGACATCTTCAATTGG 58.555 43.478 13.45 5.25 37.92 3.16
3485 5566 0.543410 TCCTCCCTTGCACGGTCTTA 60.543 55.000 8.63 0.00 0.00 2.10
3487 5568 2.203788 TCCTCCCTTGCACGGTCT 60.204 61.111 8.63 0.00 0.00 3.85
3601 5682 6.784473 AGTTGGTGTCATCATATAGAGGATCA 59.216 38.462 0.00 0.00 39.53 2.92
3639 5720 7.974504 ACATATAAGGAAAGGGTGGTATGTAG 58.025 38.462 0.00 0.00 31.79 2.74
3642 5723 7.559897 ACAAACATATAAGGAAAGGGTGGTATG 59.440 37.037 0.00 0.00 0.00 2.39
3645 5726 5.899278 ACAAACATATAAGGAAAGGGTGGT 58.101 37.500 0.00 0.00 0.00 4.16
3777 5858 1.142936 TCATCATGCCAGCTGGGTAT 58.857 50.000 33.46 16.24 43.58 2.73
3842 5923 5.335127 GCTTGAATTCATGTACATCGCTTT 58.665 37.500 19.25 0.00 0.00 3.51
3852 5933 2.636830 CTCTCCGGCTTGAATTCATGT 58.363 47.619 19.25 0.00 0.00 3.21
3876 5957 0.914644 CTTTGGAGATCCCCTCAGCA 59.085 55.000 0.00 0.00 43.76 4.41
3940 6021 0.764271 TTCTGGCCGATGCATATCCA 59.236 50.000 0.00 6.53 40.13 3.41
3945 6026 1.472026 GCAAAATTCTGGCCGATGCAT 60.472 47.619 0.00 0.00 40.13 3.96
4023 6104 1.633774 CATGAGTATAGGACGGGGCT 58.366 55.000 0.00 0.00 0.00 5.19
4163 6248 9.823647 CATCTGATAGGTTCAACACTTAGTTAT 57.176 33.333 0.00 0.00 38.74 1.89
4269 6354 9.167311 GGCCTATTACTGATAATCCATTTAGTG 57.833 37.037 0.00 0.00 32.98 2.74
4302 6388 8.560355 TGCAATAGAAAACACTAATAAGCAGA 57.440 30.769 0.00 0.00 0.00 4.26
4314 6400 4.576873 TGAAACCGTCTGCAATAGAAAACA 59.423 37.500 0.00 0.00 37.12 2.83
4337 6423 3.629855 TCATCGTCCACAATGTTGTTTGT 59.370 39.130 0.00 0.00 39.91 2.83
4378 6464 4.929808 CCAACACGCATACTTTCTAGAAGT 59.070 41.667 5.12 8.69 0.00 3.01
4379 6465 5.168569 TCCAACACGCATACTTTCTAGAAG 58.831 41.667 5.12 3.14 0.00 2.85
4392 6478 2.777094 TCTTCATTGATCCAACACGCA 58.223 42.857 0.00 0.00 0.00 5.24
4432 6518 2.552743 GGCCTAACACAAACAGTTCTCC 59.447 50.000 0.00 0.00 0.00 3.71
4513 6617 4.162509 TCCGTTCATATGTACATCCCACAA 59.837 41.667 12.68 0.00 0.00 3.33
4538 6642 0.675633 AATTATGCAGGCCCAATCGC 59.324 50.000 0.00 0.00 0.00 4.58
4640 6744 2.183679 GAGGGTCCTTCTCACATGACT 58.816 52.381 0.00 0.00 0.00 3.41
4659 6769 1.409064 CTTGCTAGTGTGGGCGATAGA 59.591 52.381 0.00 0.00 39.76 1.98
4796 6907 6.070424 GCCATAATAGGTAGGTATGGTTGCTA 60.070 42.308 9.93 0.00 44.16 3.49
4800 6911 6.970165 ATGCCATAATAGGTAGGTATGGTT 57.030 37.500 9.93 0.00 44.16 3.67
4802 6913 6.721318 ACAATGCCATAATAGGTAGGTATGG 58.279 40.000 4.84 4.84 44.81 2.74
4826 6937 5.490159 TGCATGGCAATATATCTCGAATGA 58.510 37.500 0.00 0.00 34.76 2.57
4830 6941 5.349061 AGATGCATGGCAATATATCTCGA 57.651 39.130 2.46 0.00 43.62 4.04
4855 6973 6.019075 ACGTGTGTCATAATAATGGAACGATG 60.019 38.462 0.00 0.00 33.31 3.84
4856 6974 6.046593 ACGTGTGTCATAATAATGGAACGAT 58.953 36.000 0.00 0.00 33.31 3.73
4858 6976 5.712217 ACGTGTGTCATAATAATGGAACG 57.288 39.130 0.00 0.00 34.25 3.95
4934 7052 0.973632 AAGTGATGTACGGTGGCTGA 59.026 50.000 0.00 0.00 0.00 4.26
4937 7055 4.957759 ATAAAAAGTGATGTACGGTGGC 57.042 40.909 0.00 0.00 0.00 5.01
5075 7308 2.163412 TGGGACAATGCTCAAATAACGC 59.837 45.455 0.00 0.00 31.92 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.