Multiple sequence alignment - TraesCS4A01G101100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G101100 chr4A 100.000 2576 0 0 1 2576 113580946 113578371 0.000000e+00 4758.0
1 TraesCS4A01G101100 chr4A 81.178 781 82 30 837 1600 113506112 113505380 3.720000e-158 568.0
2 TraesCS4A01G101100 chr4D 87.994 708 55 13 1 682 351673279 351673982 0.000000e+00 809.0
3 TraesCS4A01G101100 chr4D 89.138 580 41 9 1459 2021 351690887 351691461 0.000000e+00 702.0
4 TraesCS4A01G101100 chr4D 81.091 788 86 31 837 1600 351736946 351737694 2.880000e-159 571.0
5 TraesCS4A01G101100 chr4D 86.290 496 33 14 827 1290 351687781 351688273 8.220000e-140 507.0
6 TraesCS4A01G101100 chr4D 94.937 79 4 0 1389 1467 351690475 351690553 9.680000e-25 124.0
7 TraesCS4A01G101100 chr4B 80.977 778 82 36 817 1574 434713732 434714463 8.050000e-155 556.0
8 TraesCS4A01G101100 chr4B 93.817 372 17 4 417 786 434647570 434647937 2.900000e-154 555.0
9 TraesCS4A01G101100 chr4B 90.592 287 24 1 3 286 434647213 434647499 6.730000e-101 377.0
10 TraesCS4A01G101100 chr7B 77.700 574 107 13 2015 2576 609891732 609891168 5.310000e-87 331.0
11 TraesCS4A01G101100 chr2B 77.224 562 111 8 2021 2573 114058518 114059071 1.920000e-81 313.0
12 TraesCS4A01G101100 chr2B 82.051 78 12 2 1164 1240 621063631 621063555 5.950000e-07 65.8
13 TraesCS4A01G101100 chr1D 82.960 223 32 6 1134 1354 20193494 20193712 2.020000e-46 196.0
14 TraesCS4A01G101100 chr3B 88.421 95 11 0 1261 1355 612104003 612103909 5.820000e-22 115.0
15 TraesCS4A01G101100 chr3B 87.500 96 12 0 1260 1355 612359994 612359899 7.530000e-21 111.0
16 TraesCS4A01G101100 chr3D 85.088 114 12 3 1260 1372 461313412 461313303 7.530000e-21 111.0
17 TraesCS4A01G101100 chr3A 87.500 96 12 0 1260 1355 603813781 603813686 7.530000e-21 111.0
18 TraesCS4A01G101100 chr3A 86.598 97 11 2 1260 1355 603895546 603895451 3.510000e-19 106.0
19 TraesCS4A01G101100 chr2A 96.154 52 2 0 1193 1244 1365003 1364952 4.570000e-13 86.1
20 TraesCS4A01G101100 chr5A 82.278 79 12 2 1157 1234 651528234 651528157 1.650000e-07 67.6
21 TraesCS4A01G101100 chr6A 97.222 36 1 0 1204 1239 461833355 461833320 7.700000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G101100 chr4A 113578371 113580946 2575 True 4758.000000 4758 100.000000 1 2576 1 chr4A.!!$R2 2575
1 TraesCS4A01G101100 chr4A 113505380 113506112 732 True 568.000000 568 81.178000 837 1600 1 chr4A.!!$R1 763
2 TraesCS4A01G101100 chr4D 351673279 351673982 703 False 809.000000 809 87.994000 1 682 1 chr4D.!!$F1 681
3 TraesCS4A01G101100 chr4D 351736946 351737694 748 False 571.000000 571 81.091000 837 1600 1 chr4D.!!$F2 763
4 TraesCS4A01G101100 chr4D 351687781 351691461 3680 False 444.333333 702 90.121667 827 2021 3 chr4D.!!$F3 1194
5 TraesCS4A01G101100 chr4B 434713732 434714463 731 False 556.000000 556 80.977000 817 1574 1 chr4B.!!$F1 757
6 TraesCS4A01G101100 chr4B 434647213 434647937 724 False 466.000000 555 92.204500 3 786 2 chr4B.!!$F2 783
7 TraesCS4A01G101100 chr7B 609891168 609891732 564 True 331.000000 331 77.700000 2015 2576 1 chr7B.!!$R1 561
8 TraesCS4A01G101100 chr2B 114058518 114059071 553 False 313.000000 313 77.224000 2021 2573 1 chr2B.!!$F1 552

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
297 307 0.034059 ATGCCTATCGGTACTGCTGC 59.966 55.0 0.0 0.0 0.0 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1810 4459 0.108898 CAGAAGAGTCAGGTCCGCTG 60.109 60.0 0.0 0.0 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
68 69 8.966155 TCCTCCATTAAAGGTTTTAAGGATTT 57.034 30.769 7.34 0.00 35.29 2.17
70 71 7.549134 CCTCCATTAAAGGTTTTAAGGATTTGC 59.451 37.037 7.34 0.00 0.00 3.68
103 104 5.335661 CGGTTAGAGGAGAAAACCCAAATTG 60.336 44.000 0.00 0.00 39.63 2.32
104 105 5.047306 GGTTAGAGGAGAAAACCCAAATTGG 60.047 44.000 4.74 4.74 37.31 3.16
116 117 5.536497 ACCCAAATTGGTCCTTCTCTAAT 57.464 39.130 11.52 0.00 35.17 1.73
161 162 6.099413 AGAGATGCTAATCCTCTTTCACATGA 59.901 38.462 0.00 0.00 32.77 3.07
209 210 1.546476 AGGAGTAGAGTGTTGCCTTCG 59.454 52.381 0.00 0.00 0.00 3.79
228 232 0.623723 GTGATGAGGGCCCAAACCTA 59.376 55.000 27.56 2.00 38.79 3.08
238 242 3.007182 GGGCCCAAACCTAAGTAAAAACC 59.993 47.826 19.95 0.00 0.00 3.27
271 281 3.008594 TCCATTCTTCTACTTTCGGCCAA 59.991 43.478 2.24 0.00 0.00 4.52
293 303 3.056536 AGTGCATATGCCTATCGGTACTG 60.057 47.826 24.54 0.00 41.18 2.74
297 307 0.034059 ATGCCTATCGGTACTGCTGC 59.966 55.000 0.00 0.00 0.00 5.25
316 326 1.512926 CAGGTTTTCTGACCCGACAG 58.487 55.000 0.00 0.00 46.18 3.51
327 337 2.418910 CCCGACAGGCACGAGATCT 61.419 63.158 0.00 0.00 35.76 2.75
353 363 3.281341 TGCTTGCGTAAACCAATCAAG 57.719 42.857 0.00 0.00 37.70 3.02
362 372 4.094887 CGTAAACCAATCAAGGGAGATGTG 59.905 45.833 0.00 0.00 0.00 3.21
371 381 7.066284 CCAATCAAGGGAGATGTGTAGTTTTAG 59.934 40.741 0.00 0.00 0.00 1.85
372 382 5.488341 TCAAGGGAGATGTGTAGTTTTAGC 58.512 41.667 0.00 0.00 0.00 3.09
373 383 5.248477 TCAAGGGAGATGTGTAGTTTTAGCT 59.752 40.000 0.00 0.00 0.00 3.32
374 384 5.346181 AGGGAGATGTGTAGTTTTAGCTC 57.654 43.478 0.00 0.00 0.00 4.09
375 385 5.026790 AGGGAGATGTGTAGTTTTAGCTCT 58.973 41.667 0.00 0.00 0.00 4.09
376 386 6.195700 AGGGAGATGTGTAGTTTTAGCTCTA 58.804 40.000 0.00 0.00 0.00 2.43
377 387 6.322712 AGGGAGATGTGTAGTTTTAGCTCTAG 59.677 42.308 0.00 0.00 0.00 2.43
378 388 6.321690 GGGAGATGTGTAGTTTTAGCTCTAGA 59.678 42.308 0.00 0.00 0.00 2.43
379 389 7.422399 GGAGATGTGTAGTTTTAGCTCTAGAG 58.578 42.308 15.85 15.85 0.00 2.43
411 421 3.442996 CGCAAGAAGTCACCCCTAG 57.557 57.895 0.00 0.00 43.02 3.02
412 422 0.108138 CGCAAGAAGTCACCCCTAGG 60.108 60.000 0.06 0.06 43.02 3.02
413 423 1.276622 GCAAGAAGTCACCCCTAGGA 58.723 55.000 11.48 0.00 36.73 2.94
414 424 1.066071 GCAAGAAGTCACCCCTAGGAC 60.066 57.143 11.48 0.00 36.73 3.85
415 425 1.555533 CAAGAAGTCACCCCTAGGACC 59.444 57.143 11.48 0.00 36.73 4.46
416 426 1.094269 AGAAGTCACCCCTAGGACCT 58.906 55.000 11.48 0.00 36.73 3.85
417 427 2.295143 AGAAGTCACCCCTAGGACCTA 58.705 52.381 11.48 0.13 36.73 3.08
418 428 2.245287 AGAAGTCACCCCTAGGACCTAG 59.755 54.545 20.23 20.23 36.73 3.02
419 429 0.262285 AGTCACCCCTAGGACCTAGC 59.738 60.000 21.54 8.04 33.12 3.42
420 430 1.108132 GTCACCCCTAGGACCTAGCG 61.108 65.000 21.54 13.93 33.12 4.26
421 431 1.229359 CACCCCTAGGACCTAGCGA 59.771 63.158 21.54 0.00 33.12 4.93
422 432 1.108132 CACCCCTAGGACCTAGCGAC 61.108 65.000 21.54 0.00 33.12 5.19
423 433 1.897615 CCCCTAGGACCTAGCGACG 60.898 68.421 21.54 8.94 33.12 5.12
424 434 1.147824 CCCTAGGACCTAGCGACGA 59.852 63.158 21.54 0.00 33.12 4.20
425 435 0.250814 CCCTAGGACCTAGCGACGAT 60.251 60.000 21.54 0.00 33.12 3.73
426 436 0.875728 CCTAGGACCTAGCGACGATG 59.124 60.000 21.54 3.92 33.12 3.84
427 437 1.542767 CCTAGGACCTAGCGACGATGA 60.543 57.143 21.54 0.00 33.12 2.92
428 438 2.219458 CTAGGACCTAGCGACGATGAA 58.781 52.381 15.67 0.00 0.00 2.57
429 439 1.471119 AGGACCTAGCGACGATGAAA 58.529 50.000 0.00 0.00 0.00 2.69
430 440 1.405821 AGGACCTAGCGACGATGAAAG 59.594 52.381 0.00 0.00 0.00 2.62
431 441 1.536284 GGACCTAGCGACGATGAAAGG 60.536 57.143 0.00 0.00 0.00 3.11
432 442 1.134560 GACCTAGCGACGATGAAAGGT 59.865 52.381 5.77 5.77 39.99 3.50
433 443 1.134560 ACCTAGCGACGATGAAAGGTC 59.865 52.381 0.00 0.00 31.78 3.85
434 444 1.134367 CCTAGCGACGATGAAAGGTCA 59.866 52.381 0.00 0.00 38.41 4.02
435 445 2.455032 CTAGCGACGATGAAAGGTCAG 58.545 52.381 0.00 0.00 37.14 3.51
436 446 0.108615 AGCGACGATGAAAGGTCAGG 60.109 55.000 0.00 0.00 37.14 3.86
437 447 1.696832 GCGACGATGAAAGGTCAGGC 61.697 60.000 0.00 0.00 37.14 4.85
438 448 0.108615 CGACGATGAAAGGTCAGGCT 60.109 55.000 0.00 0.00 37.14 4.58
439 449 1.673033 CGACGATGAAAGGTCAGGCTT 60.673 52.381 0.00 0.00 37.14 4.35
440 450 1.734465 GACGATGAAAGGTCAGGCTTG 59.266 52.381 0.00 0.00 37.14 4.01
441 451 0.449388 CGATGAAAGGTCAGGCTTGC 59.551 55.000 0.00 0.00 37.14 4.01
442 452 1.538047 GATGAAAGGTCAGGCTTGCA 58.462 50.000 0.00 0.00 37.14 4.08
443 453 1.888512 GATGAAAGGTCAGGCTTGCAA 59.111 47.619 0.00 0.00 37.14 4.08
444 454 1.999648 TGAAAGGTCAGGCTTGCAAT 58.000 45.000 0.00 0.00 0.00 3.56
445 455 1.888512 TGAAAGGTCAGGCTTGCAATC 59.111 47.619 0.00 0.00 0.00 2.67
446 456 0.883833 AAAGGTCAGGCTTGCAATCG 59.116 50.000 0.00 0.00 0.00 3.34
447 457 1.589716 AAGGTCAGGCTTGCAATCGC 61.590 55.000 0.00 0.00 39.24 4.58
456 466 4.169102 TGCAATCGCACGTCTCTC 57.831 55.556 0.00 0.00 45.36 3.20
457 467 1.288752 TGCAATCGCACGTCTCTCA 59.711 52.632 0.00 0.00 45.36 3.27
458 468 0.319469 TGCAATCGCACGTCTCTCAA 60.319 50.000 0.00 0.00 45.36 3.02
459 469 0.790207 GCAATCGCACGTCTCTCAAA 59.210 50.000 0.00 0.00 38.36 2.69
460 470 1.462541 GCAATCGCACGTCTCTCAAAC 60.463 52.381 0.00 0.00 38.36 2.93
461 471 1.126846 CAATCGCACGTCTCTCAAACC 59.873 52.381 0.00 0.00 0.00 3.27
462 472 0.732880 ATCGCACGTCTCTCAAACCG 60.733 55.000 0.00 0.00 0.00 4.44
463 473 1.371267 CGCACGTCTCTCAAACCGA 60.371 57.895 0.00 0.00 0.00 4.69
464 474 0.937699 CGCACGTCTCTCAAACCGAA 60.938 55.000 0.00 0.00 0.00 4.30
465 475 1.214367 GCACGTCTCTCAAACCGAAA 58.786 50.000 0.00 0.00 0.00 3.46
466 476 1.192534 GCACGTCTCTCAAACCGAAAG 59.807 52.381 0.00 0.00 0.00 2.62
467 477 1.192534 CACGTCTCTCAAACCGAAAGC 59.807 52.381 0.00 0.00 0.00 3.51
468 478 1.068741 ACGTCTCTCAAACCGAAAGCT 59.931 47.619 0.00 0.00 0.00 3.74
469 479 1.721926 CGTCTCTCAAACCGAAAGCTC 59.278 52.381 0.00 0.00 0.00 4.09
470 480 1.721926 GTCTCTCAAACCGAAAGCTCG 59.278 52.381 0.00 0.00 45.02 5.03
484 494 4.775746 CTCGAGAGCCGTGAACTC 57.224 61.111 6.58 0.00 39.75 3.01
485 495 1.876664 CTCGAGAGCCGTGAACTCA 59.123 57.895 6.58 0.00 39.75 3.41
486 496 0.455295 CTCGAGAGCCGTGAACTCAC 60.455 60.000 6.58 0.00 43.15 3.51
487 497 1.444553 CGAGAGCCGTGAACTCACC 60.445 63.158 4.30 0.00 43.66 4.02
488 498 1.666011 GAGAGCCGTGAACTCACCA 59.334 57.895 4.30 0.00 43.66 4.17
489 499 0.389166 GAGAGCCGTGAACTCACCAG 60.389 60.000 4.30 0.00 43.66 4.00
490 500 0.827925 AGAGCCGTGAACTCACCAGA 60.828 55.000 4.30 0.00 43.66 3.86
492 502 1.374758 GCCGTGAACTCACCAGAGG 60.375 63.158 4.30 1.36 46.44 3.69
493 503 1.816863 GCCGTGAACTCACCAGAGGA 61.817 60.000 4.30 0.00 46.44 3.71
494 504 0.038159 CCGTGAACTCACCAGAGGAC 60.038 60.000 4.30 0.00 46.44 3.85
495 505 0.673985 CGTGAACTCACCAGAGGACA 59.326 55.000 4.30 0.00 46.44 4.02
496 506 1.273606 CGTGAACTCACCAGAGGACAT 59.726 52.381 4.30 0.00 46.44 3.06
497 507 2.492088 CGTGAACTCACCAGAGGACATA 59.508 50.000 4.30 0.00 46.44 2.29
498 508 3.056821 CGTGAACTCACCAGAGGACATAA 60.057 47.826 4.30 0.00 46.44 1.90
499 509 4.499183 GTGAACTCACCAGAGGACATAAG 58.501 47.826 0.00 0.00 46.44 1.73
500 510 4.220821 GTGAACTCACCAGAGGACATAAGA 59.779 45.833 0.00 0.00 46.44 2.10
501 511 4.838423 TGAACTCACCAGAGGACATAAGAA 59.162 41.667 0.00 0.00 46.44 2.52
502 512 5.485353 TGAACTCACCAGAGGACATAAGAAT 59.515 40.000 0.00 0.00 46.44 2.40
503 513 6.013379 TGAACTCACCAGAGGACATAAGAATT 60.013 38.462 0.00 0.00 46.44 2.17
504 514 5.983540 ACTCACCAGAGGACATAAGAATTC 58.016 41.667 0.00 0.00 46.44 2.17
505 515 5.485353 ACTCACCAGAGGACATAAGAATTCA 59.515 40.000 8.44 0.00 46.44 2.57
506 516 5.982356 TCACCAGAGGACATAAGAATTCAG 58.018 41.667 8.44 0.00 0.00 3.02
507 517 5.721480 TCACCAGAGGACATAAGAATTCAGA 59.279 40.000 8.44 0.00 0.00 3.27
508 518 6.047870 CACCAGAGGACATAAGAATTCAGAG 58.952 44.000 8.44 0.00 0.00 3.35
509 519 5.130145 ACCAGAGGACATAAGAATTCAGAGG 59.870 44.000 8.44 0.00 0.00 3.69
510 520 5.055812 CAGAGGACATAAGAATTCAGAGGC 58.944 45.833 8.44 0.00 0.00 4.70
511 521 4.102367 AGAGGACATAAGAATTCAGAGGCC 59.898 45.833 8.44 6.12 0.00 5.19
512 522 4.043596 AGGACATAAGAATTCAGAGGCCT 58.956 43.478 3.86 3.86 0.00 5.19
513 523 4.102367 AGGACATAAGAATTCAGAGGCCTC 59.898 45.833 26.22 26.22 0.00 4.70
514 524 4.141620 GGACATAAGAATTCAGAGGCCTCA 60.142 45.833 33.90 14.91 0.00 3.86
515 525 4.775236 ACATAAGAATTCAGAGGCCTCAC 58.225 43.478 33.90 16.59 0.00 3.51
516 526 4.472833 ACATAAGAATTCAGAGGCCTCACT 59.527 41.667 33.90 18.37 0.00 3.41
517 527 3.625649 AAGAATTCAGAGGCCTCACTC 57.374 47.619 33.90 20.37 37.77 3.51
519 529 3.180507 AGAATTCAGAGGCCTCACTCTT 58.819 45.455 33.90 20.66 45.21 2.85
520 530 3.197549 AGAATTCAGAGGCCTCACTCTTC 59.802 47.826 33.90 26.38 45.21 2.87
521 531 2.015456 TTCAGAGGCCTCACTCTTCA 57.985 50.000 33.90 8.03 45.21 3.02
522 532 1.554836 TCAGAGGCCTCACTCTTCAG 58.445 55.000 33.90 12.72 45.21 3.02
523 533 1.076187 TCAGAGGCCTCACTCTTCAGA 59.924 52.381 33.90 14.66 45.21 3.27
524 534 2.109774 CAGAGGCCTCACTCTTCAGAT 58.890 52.381 33.90 6.77 45.21 2.90
525 535 3.053320 TCAGAGGCCTCACTCTTCAGATA 60.053 47.826 33.90 2.75 45.21 1.98
526 536 3.896888 CAGAGGCCTCACTCTTCAGATAT 59.103 47.826 33.90 5.98 45.21 1.63
527 537 5.076182 CAGAGGCCTCACTCTTCAGATATA 58.924 45.833 33.90 0.00 45.21 0.86
528 538 5.048083 CAGAGGCCTCACTCTTCAGATATAC 60.048 48.000 33.90 1.44 45.21 1.47
529 539 4.809193 AGGCCTCACTCTTCAGATATACA 58.191 43.478 0.00 0.00 0.00 2.29
530 540 4.832266 AGGCCTCACTCTTCAGATATACAG 59.168 45.833 0.00 0.00 0.00 2.74
531 541 4.586841 GGCCTCACTCTTCAGATATACAGT 59.413 45.833 0.00 0.00 0.00 3.55
532 542 5.770663 GGCCTCACTCTTCAGATATACAGTA 59.229 44.000 0.00 0.00 0.00 2.74
533 543 6.072175 GGCCTCACTCTTCAGATATACAGTAG 60.072 46.154 0.00 0.00 0.00 2.57
534 544 6.488683 GCCTCACTCTTCAGATATACAGTAGT 59.511 42.308 0.00 0.00 0.00 2.73
535 545 7.662258 GCCTCACTCTTCAGATATACAGTAGTA 59.338 40.741 0.00 0.00 34.10 1.82
536 546 9.562408 CCTCACTCTTCAGATATACAGTAGTAA 57.438 37.037 0.00 0.00 33.13 2.24
539 549 9.953697 CACTCTTCAGATATACAGTAGTAAACC 57.046 37.037 0.00 0.00 33.13 3.27
540 550 8.838365 ACTCTTCAGATATACAGTAGTAAACCG 58.162 37.037 0.00 0.00 33.13 4.44
541 551 8.969260 TCTTCAGATATACAGTAGTAAACCGA 57.031 34.615 0.00 0.00 33.13 4.69
542 552 9.570468 TCTTCAGATATACAGTAGTAAACCGAT 57.430 33.333 0.00 0.00 33.13 4.18
543 553 9.828852 CTTCAGATATACAGTAGTAAACCGATC 57.171 37.037 0.00 0.00 33.13 3.69
544 554 8.913487 TCAGATATACAGTAGTAAACCGATCA 57.087 34.615 0.00 0.00 33.13 2.92
545 555 8.781196 TCAGATATACAGTAGTAAACCGATCAC 58.219 37.037 0.00 0.00 33.13 3.06
546 556 7.745155 CAGATATACAGTAGTAAACCGATCACG 59.255 40.741 0.00 0.00 34.96 4.35
547 557 7.658982 AGATATACAGTAGTAAACCGATCACGA 59.341 37.037 0.00 0.00 36.27 4.35
548 558 4.771590 ACAGTAGTAAACCGATCACGAA 57.228 40.909 0.00 0.00 42.66 3.85
549 559 5.125100 ACAGTAGTAAACCGATCACGAAA 57.875 39.130 0.00 0.00 42.66 3.46
550 560 5.159209 ACAGTAGTAAACCGATCACGAAAG 58.841 41.667 0.00 0.00 42.66 2.62
551 561 7.362401 ATACAGTAGTAAACCGATCACGAAAGT 60.362 37.037 0.00 0.00 38.31 2.66
561 571 2.826702 ACGAAAGTCCCGGTTGCT 59.173 55.556 0.00 0.00 44.19 3.91
562 572 1.147600 ACGAAAGTCCCGGTTGCTT 59.852 52.632 0.00 0.00 44.19 3.91
563 573 1.164041 ACGAAAGTCCCGGTTGCTTG 61.164 55.000 0.00 0.00 44.19 4.01
564 574 1.285950 GAAAGTCCCGGTTGCTTGC 59.714 57.895 0.00 0.00 0.00 4.01
565 575 2.142357 GAAAGTCCCGGTTGCTTGCC 62.142 60.000 0.00 0.00 0.00 4.52
566 576 2.920076 AAAGTCCCGGTTGCTTGCCA 62.920 55.000 0.00 0.00 0.00 4.92
567 577 2.909965 GTCCCGGTTGCTTGCCAA 60.910 61.111 0.00 0.00 0.00 4.52
568 578 2.597217 TCCCGGTTGCTTGCCAAG 60.597 61.111 0.00 0.00 33.21 3.61
569 579 3.683937 CCCGGTTGCTTGCCAAGG 61.684 66.667 6.57 0.00 33.21 3.61
570 580 4.362476 CCGGTTGCTTGCCAAGGC 62.362 66.667 6.57 3.61 42.35 4.35
571 581 3.297620 CGGTTGCTTGCCAAGGCT 61.298 61.111 12.96 0.00 42.51 4.58
572 582 2.859981 CGGTTGCTTGCCAAGGCTT 61.860 57.895 12.96 0.00 42.51 4.35
573 583 1.005748 GGTTGCTTGCCAAGGCTTC 60.006 57.895 12.96 2.10 42.51 3.86
574 584 1.372128 GTTGCTTGCCAAGGCTTCG 60.372 57.895 12.96 0.00 42.51 3.79
575 585 1.528076 TTGCTTGCCAAGGCTTCGA 60.528 52.632 12.96 0.00 42.51 3.71
576 586 0.895100 TTGCTTGCCAAGGCTTCGAT 60.895 50.000 12.96 0.00 42.51 3.59
577 587 1.308069 TGCTTGCCAAGGCTTCGATC 61.308 55.000 12.96 0.00 42.51 3.69
578 588 1.028868 GCTTGCCAAGGCTTCGATCT 61.029 55.000 12.96 0.00 42.51 2.75
579 589 1.012841 CTTGCCAAGGCTTCGATCTC 58.987 55.000 12.96 0.00 42.51 2.75
580 590 0.324614 TTGCCAAGGCTTCGATCTCA 59.675 50.000 12.96 0.00 42.51 3.27
581 591 0.324614 TGCCAAGGCTTCGATCTCAA 59.675 50.000 12.96 0.00 42.51 3.02
582 592 1.012841 GCCAAGGCTTCGATCTCAAG 58.987 55.000 3.29 0.00 38.26 3.02
583 593 1.677217 GCCAAGGCTTCGATCTCAAGT 60.677 52.381 3.29 0.00 38.26 3.16
584 594 2.275318 CCAAGGCTTCGATCTCAAGTC 58.725 52.381 0.00 0.00 0.00 3.01
585 595 2.275318 CAAGGCTTCGATCTCAAGTCC 58.725 52.381 0.00 5.08 0.00 3.85
586 596 0.827368 AGGCTTCGATCTCAAGTCCC 59.173 55.000 3.01 0.00 0.00 4.46
587 597 0.537188 GGCTTCGATCTCAAGTCCCA 59.463 55.000 0.00 0.00 0.00 4.37
588 598 1.066143 GGCTTCGATCTCAAGTCCCAA 60.066 52.381 0.00 0.00 0.00 4.12
589 599 2.003301 GCTTCGATCTCAAGTCCCAAC 58.997 52.381 0.00 0.00 0.00 3.77
590 600 2.263077 CTTCGATCTCAAGTCCCAACG 58.737 52.381 0.00 0.00 0.00 4.10
591 601 1.541379 TCGATCTCAAGTCCCAACGA 58.459 50.000 0.00 0.00 0.00 3.85
592 602 1.201647 TCGATCTCAAGTCCCAACGAC 59.798 52.381 0.00 0.00 42.32 4.34
593 603 1.736032 CGATCTCAAGTCCCAACGACC 60.736 57.143 0.00 0.00 43.08 4.79
594 604 0.246635 ATCTCAAGTCCCAACGACCG 59.753 55.000 0.00 0.00 43.08 4.79
595 605 2.027625 CTCAAGTCCCAACGACCGC 61.028 63.158 0.00 0.00 43.08 5.68
596 606 2.030562 CAAGTCCCAACGACCGCT 59.969 61.111 0.00 0.00 43.08 5.52
597 607 2.027625 CAAGTCCCAACGACCGCTC 61.028 63.158 0.00 0.00 43.08 5.03
598 608 3.236003 AAGTCCCAACGACCGCTCC 62.236 63.158 0.00 0.00 43.08 4.70
599 609 3.998672 GTCCCAACGACCGCTCCA 61.999 66.667 0.00 0.00 35.23 3.86
600 610 3.235481 TCCCAACGACCGCTCCAA 61.235 61.111 0.00 0.00 0.00 3.53
601 611 2.281208 CCCAACGACCGCTCCAAA 60.281 61.111 0.00 0.00 0.00 3.28
602 612 2.613506 CCCAACGACCGCTCCAAAC 61.614 63.158 0.00 0.00 0.00 2.93
603 613 2.613506 CCAACGACCGCTCCAAACC 61.614 63.158 0.00 0.00 0.00 3.27
604 614 2.663852 AACGACCGCTCCAAACCG 60.664 61.111 0.00 0.00 0.00 4.44
609 619 4.038080 CCGCTCCAAACCGGCAAC 62.038 66.667 0.00 0.00 37.85 4.17
621 631 3.741476 GGCAACGGAAGCAGCTGG 61.741 66.667 17.12 0.00 34.97 4.85
622 632 4.410743 GCAACGGAAGCAGCTGGC 62.411 66.667 17.12 7.98 45.30 4.85
632 642 2.359107 CAGCTGGCTCGCTTGGAA 60.359 61.111 5.57 0.00 38.41 3.53
633 643 1.748122 CAGCTGGCTCGCTTGGAAT 60.748 57.895 5.57 0.00 38.41 3.01
634 644 1.451028 AGCTGGCTCGCTTGGAATC 60.451 57.895 0.00 0.00 36.74 2.52
635 645 2.817423 GCTGGCTCGCTTGGAATCG 61.817 63.158 0.00 0.00 0.00 3.34
636 646 2.125147 TGGCTCGCTTGGAATCGG 60.125 61.111 0.00 0.00 0.00 4.18
637 647 2.897350 GGCTCGCTTGGAATCGGG 60.897 66.667 0.00 0.00 0.00 5.14
638 648 2.897350 GCTCGCTTGGAATCGGGG 60.897 66.667 0.00 0.00 0.00 5.73
639 649 2.900273 CTCGCTTGGAATCGGGGA 59.100 61.111 0.00 0.00 0.00 4.81
640 650 1.220749 CTCGCTTGGAATCGGGGAA 59.779 57.895 0.00 0.00 0.00 3.97
641 651 1.078708 TCGCTTGGAATCGGGGAAC 60.079 57.895 0.00 0.00 0.00 3.62
642 652 2.461110 CGCTTGGAATCGGGGAACG 61.461 63.158 0.00 0.00 46.11 3.95
652 662 2.493501 GGGGAACGACGACCTAGC 59.506 66.667 0.00 0.00 0.00 3.42
653 663 2.493501 GGGAACGACGACCTAGCC 59.506 66.667 0.00 0.00 0.00 3.93
654 664 2.050934 GGGAACGACGACCTAGCCT 61.051 63.158 0.00 0.00 0.00 4.58
655 665 1.602327 GGGAACGACGACCTAGCCTT 61.602 60.000 0.00 0.00 0.00 4.35
656 666 0.458025 GGAACGACGACCTAGCCTTG 60.458 60.000 0.00 0.00 0.00 3.61
657 667 1.077089 GAACGACGACCTAGCCTTGC 61.077 60.000 0.00 0.00 0.00 4.01
658 668 2.202756 CGACGACCTAGCCTTGCC 60.203 66.667 0.00 0.00 0.00 4.52
659 669 2.978824 GACGACCTAGCCTTGCCA 59.021 61.111 0.00 0.00 0.00 4.92
660 670 1.153549 GACGACCTAGCCTTGCCAG 60.154 63.158 0.00 0.00 0.00 4.85
661 671 1.889530 GACGACCTAGCCTTGCCAGT 61.890 60.000 0.00 0.00 0.00 4.00
662 672 1.153549 CGACCTAGCCTTGCCAGTC 60.154 63.158 0.00 0.00 0.00 3.51
663 673 1.888436 CGACCTAGCCTTGCCAGTCA 61.888 60.000 0.00 0.00 0.00 3.41
664 674 0.107945 GACCTAGCCTTGCCAGTCAG 60.108 60.000 0.00 0.00 0.00 3.51
665 675 1.451028 CCTAGCCTTGCCAGTCAGC 60.451 63.158 0.00 0.00 0.00 4.26
666 676 1.297689 CTAGCCTTGCCAGTCAGCA 59.702 57.895 0.00 0.00 42.17 4.41
667 677 1.003355 TAGCCTTGCCAGTCAGCAC 60.003 57.895 0.00 0.00 43.97 4.40
668 678 2.786539 TAGCCTTGCCAGTCAGCACG 62.787 60.000 0.00 0.00 43.97 5.34
669 679 3.052082 CCTTGCCAGTCAGCACGG 61.052 66.667 0.00 0.00 44.59 4.94
670 680 2.281070 CTTGCCAGTCAGCACGGT 60.281 61.111 0.00 0.00 43.97 4.83
671 681 2.280797 TTGCCAGTCAGCACGGTC 60.281 61.111 0.00 0.00 43.97 4.79
672 682 4.662961 TGCCAGTCAGCACGGTCG 62.663 66.667 0.00 0.00 38.00 4.79
674 684 3.991051 CCAGTCAGCACGGTCGGT 61.991 66.667 0.00 0.00 0.00 4.69
682 692 4.640855 CACGGTCGGTGTCGCACT 62.641 66.667 9.31 0.00 41.89 4.40
683 693 4.640855 ACGGTCGGTGTCGCACTG 62.641 66.667 11.20 11.20 41.65 3.66
695 705 3.156334 GCACTGCGGTACAAGACG 58.844 61.111 0.00 0.00 0.00 4.18
696 706 1.372499 GCACTGCGGTACAAGACGA 60.372 57.895 0.00 0.00 0.00 4.20
697 707 1.344942 GCACTGCGGTACAAGACGAG 61.345 60.000 0.00 0.00 0.00 4.18
698 708 1.080705 ACTGCGGTACAAGACGAGC 60.081 57.895 0.00 0.00 34.21 5.03
699 709 1.805945 CTGCGGTACAAGACGAGCC 60.806 63.158 0.00 0.00 33.08 4.70
700 710 2.260434 GCGGTACAAGACGAGCCA 59.740 61.111 0.00 0.00 0.00 4.75
701 711 1.805945 GCGGTACAAGACGAGCCAG 60.806 63.158 0.00 0.00 0.00 4.85
702 712 1.805945 CGGTACAAGACGAGCCAGC 60.806 63.158 0.00 0.00 0.00 4.85
703 713 1.805945 GGTACAAGACGAGCCAGCG 60.806 63.158 0.00 0.00 37.29 5.18
704 714 2.126071 TACAAGACGAGCCAGCGC 60.126 61.111 0.00 0.00 33.86 5.92
705 715 3.964221 TACAAGACGAGCCAGCGCG 62.964 63.158 14.23 14.23 44.41 6.86
716 726 2.480555 CAGCGCGTGGAATGGAAC 59.519 61.111 8.43 0.00 0.00 3.62
717 727 3.118454 AGCGCGTGGAATGGAACG 61.118 61.111 8.43 0.00 42.61 3.95
718 728 4.160635 GCGCGTGGAATGGAACGG 62.161 66.667 8.43 0.00 40.12 4.44
719 729 2.740826 CGCGTGGAATGGAACGGT 60.741 61.111 0.00 0.00 40.12 4.83
720 730 2.322081 CGCGTGGAATGGAACGGTT 61.322 57.895 0.00 0.00 40.12 4.44
721 731 1.847890 CGCGTGGAATGGAACGGTTT 61.848 55.000 0.00 0.00 40.12 3.27
722 732 0.109919 GCGTGGAATGGAACGGTTTC 60.110 55.000 0.00 0.00 40.12 2.78
723 733 0.165079 CGTGGAATGGAACGGTTTCG 59.835 55.000 0.00 0.00 43.02 3.46
724 734 0.519961 GTGGAATGGAACGGTTTCGG 59.480 55.000 0.00 0.00 41.39 4.30
725 735 1.238625 TGGAATGGAACGGTTTCGGC 61.239 55.000 0.00 0.00 41.39 5.54
726 736 0.958876 GGAATGGAACGGTTTCGGCT 60.959 55.000 0.00 0.00 41.39 5.52
727 737 0.446616 GAATGGAACGGTTTCGGCTC 59.553 55.000 0.00 0.00 41.39 4.70
728 738 0.250553 AATGGAACGGTTTCGGCTCA 60.251 50.000 0.00 0.00 41.39 4.26
729 739 0.953960 ATGGAACGGTTTCGGCTCAC 60.954 55.000 0.00 0.00 41.39 3.51
730 740 2.322830 GGAACGGTTTCGGCTCACC 61.323 63.158 0.00 0.00 41.39 4.02
751 761 3.586961 CGGCCGCTGAGAGATCGA 61.587 66.667 14.67 0.00 0.00 3.59
752 762 2.913765 CGGCCGCTGAGAGATCGAT 61.914 63.158 14.67 0.00 0.00 3.59
753 763 1.080839 GGCCGCTGAGAGATCGATC 60.081 63.158 17.91 17.91 0.00 3.69
754 764 1.441849 GCCGCTGAGAGATCGATCG 60.442 63.158 19.33 9.36 0.00 3.69
755 765 1.846849 GCCGCTGAGAGATCGATCGA 61.847 60.000 21.86 21.86 0.00 3.59
756 766 0.801872 CCGCTGAGAGATCGATCGAT 59.198 55.000 29.76 29.76 37.59 3.59
765 775 1.099689 GATCGATCGATCCCTCCTCC 58.900 60.000 36.97 17.65 43.71 4.30
766 776 0.701731 ATCGATCGATCCCTCCTCCT 59.298 55.000 24.60 0.00 0.00 3.69
767 777 0.037017 TCGATCGATCCCTCCTCCTC 59.963 60.000 19.51 0.00 0.00 3.71
768 778 0.963355 CGATCGATCCCTCCTCCTCC 60.963 65.000 19.51 0.00 0.00 4.30
769 779 0.407918 GATCGATCCCTCCTCCTCCT 59.592 60.000 14.76 0.00 0.00 3.69
770 780 0.407918 ATCGATCCCTCCTCCTCCTC 59.592 60.000 0.00 0.00 0.00 3.71
771 781 1.228737 CGATCCCTCCTCCTCCTCC 60.229 68.421 0.00 0.00 0.00 4.30
772 782 1.725169 CGATCCCTCCTCCTCCTCCT 61.725 65.000 0.00 0.00 0.00 3.69
773 783 0.114364 GATCCCTCCTCCTCCTCCTC 59.886 65.000 0.00 0.00 0.00 3.71
774 784 1.376249 ATCCCTCCTCCTCCTCCTCC 61.376 65.000 0.00 0.00 0.00 4.30
775 785 2.018086 CCCTCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
776 786 1.598856 CCCTCCTCCTCCTCCTCCTT 61.599 65.000 0.00 0.00 0.00 3.36
777 787 0.341609 CCTCCTCCTCCTCCTCCTTT 59.658 60.000 0.00 0.00 0.00 3.11
778 788 1.691163 CCTCCTCCTCCTCCTCCTTTC 60.691 61.905 0.00 0.00 0.00 2.62
779 789 1.290732 CTCCTCCTCCTCCTCCTTTCT 59.709 57.143 0.00 0.00 0.00 2.52
780 790 1.725182 TCCTCCTCCTCCTCCTTTCTT 59.275 52.381 0.00 0.00 0.00 2.52
781 791 2.115427 CCTCCTCCTCCTCCTTTCTTC 58.885 57.143 0.00 0.00 0.00 2.87
782 792 2.292851 CCTCCTCCTCCTCCTTTCTTCT 60.293 54.545 0.00 0.00 0.00 2.85
783 793 3.031013 CTCCTCCTCCTCCTTTCTTCTC 58.969 54.545 0.00 0.00 0.00 2.87
784 794 2.657459 TCCTCCTCCTCCTTTCTTCTCT 59.343 50.000 0.00 0.00 0.00 3.10
785 795 3.078305 TCCTCCTCCTCCTTTCTTCTCTT 59.922 47.826 0.00 0.00 0.00 2.85
786 796 3.450817 CCTCCTCCTCCTTTCTTCTCTTC 59.549 52.174 0.00 0.00 0.00 2.87
787 797 3.093057 TCCTCCTCCTTTCTTCTCTTCG 58.907 50.000 0.00 0.00 0.00 3.79
788 798 2.418060 CCTCCTCCTTTCTTCTCTTCGC 60.418 54.545 0.00 0.00 0.00 4.70
789 799 2.495669 CTCCTCCTTTCTTCTCTTCGCT 59.504 50.000 0.00 0.00 0.00 4.93
790 800 2.900546 TCCTCCTTTCTTCTCTTCGCTT 59.099 45.455 0.00 0.00 0.00 4.68
791 801 2.999355 CCTCCTTTCTTCTCTTCGCTTG 59.001 50.000 0.00 0.00 0.00 4.01
792 802 2.414825 CTCCTTTCTTCTCTTCGCTTGC 59.585 50.000 0.00 0.00 0.00 4.01
793 803 1.466558 CCTTTCTTCTCTTCGCTTGCC 59.533 52.381 0.00 0.00 0.00 4.52
794 804 2.146342 CTTTCTTCTCTTCGCTTGCCA 58.854 47.619 0.00 0.00 0.00 4.92
795 805 1.512926 TTCTTCTCTTCGCTTGCCAC 58.487 50.000 0.00 0.00 0.00 5.01
796 806 0.392706 TCTTCTCTTCGCTTGCCACA 59.607 50.000 0.00 0.00 0.00 4.17
797 807 0.514691 CTTCTCTTCGCTTGCCACAC 59.485 55.000 0.00 0.00 0.00 3.82
798 808 0.106708 TTCTCTTCGCTTGCCACACT 59.893 50.000 0.00 0.00 0.00 3.55
799 809 0.966179 TCTCTTCGCTTGCCACACTA 59.034 50.000 0.00 0.00 0.00 2.74
800 810 1.550524 TCTCTTCGCTTGCCACACTAT 59.449 47.619 0.00 0.00 0.00 2.12
801 811 2.028112 TCTCTTCGCTTGCCACACTATT 60.028 45.455 0.00 0.00 0.00 1.73
802 812 2.744202 CTCTTCGCTTGCCACACTATTT 59.256 45.455 0.00 0.00 0.00 1.40
803 813 3.146066 TCTTCGCTTGCCACACTATTTT 58.854 40.909 0.00 0.00 0.00 1.82
804 814 4.320023 TCTTCGCTTGCCACACTATTTTA 58.680 39.130 0.00 0.00 0.00 1.52
805 815 4.153475 TCTTCGCTTGCCACACTATTTTAC 59.847 41.667 0.00 0.00 0.00 2.01
806 816 3.670625 TCGCTTGCCACACTATTTTACT 58.329 40.909 0.00 0.00 0.00 2.24
807 817 4.823157 TCGCTTGCCACACTATTTTACTA 58.177 39.130 0.00 0.00 0.00 1.82
808 818 4.868171 TCGCTTGCCACACTATTTTACTAG 59.132 41.667 0.00 0.00 0.00 2.57
809 819 4.630069 CGCTTGCCACACTATTTTACTAGT 59.370 41.667 0.00 0.00 32.10 2.57
810 820 5.808540 CGCTTGCCACACTATTTTACTAGTA 59.191 40.000 0.00 0.00 30.78 1.82
811 821 6.237755 CGCTTGCCACACTATTTTACTAGTAC 60.238 42.308 0.91 0.00 30.78 2.73
812 822 6.237755 GCTTGCCACACTATTTTACTAGTACG 60.238 42.308 0.91 0.00 30.78 3.67
813 823 6.271488 TGCCACACTATTTTACTAGTACGT 57.729 37.500 0.91 0.00 30.78 3.57
814 824 7.389803 TGCCACACTATTTTACTAGTACGTA 57.610 36.000 0.91 0.00 30.78 3.57
815 825 7.999679 TGCCACACTATTTTACTAGTACGTAT 58.000 34.615 0.91 0.00 30.78 3.06
816 826 7.916977 TGCCACACTATTTTACTAGTACGTATG 59.083 37.037 0.91 0.00 30.78 2.39
817 827 8.131100 GCCACACTATTTTACTAGTACGTATGA 58.869 37.037 0.91 0.00 30.78 2.15
890 905 0.530744 AAGTACGCGCCAGATCTTCA 59.469 50.000 5.73 0.00 0.00 3.02
901 916 4.331108 GCCAGATCTTCACTTCTTTTCCT 58.669 43.478 0.00 0.00 0.00 3.36
942 962 1.756430 CTCCTGGTCATCTGTCTCGA 58.244 55.000 0.00 0.00 0.00 4.04
976 1023 1.203523 CCTAGCTTCGTCTCAGTTGCT 59.796 52.381 0.00 0.00 34.92 3.91
1030 1084 0.179086 GAAGAGGTCTAGGCAGCAGC 60.179 60.000 0.00 0.00 41.10 5.25
1031 1085 0.906756 AAGAGGTCTAGGCAGCAGCA 60.907 55.000 2.65 0.00 44.61 4.41
1032 1086 0.906756 AGAGGTCTAGGCAGCAGCAA 60.907 55.000 2.65 0.00 44.61 3.91
1118 1172 2.669569 CTCCGGCCACCACAACAG 60.670 66.667 2.24 0.00 0.00 3.16
1131 1194 2.111043 AACAGCCACGGTCACCAG 59.889 61.111 0.00 0.00 0.00 4.00
1245 1308 2.670934 AGCCACAAGAAGCCGCAG 60.671 61.111 0.00 0.00 0.00 5.18
1580 4229 3.380479 TGACTTCCGACGTTGAAATCT 57.620 42.857 3.74 0.00 0.00 2.40
1602 4251 6.558009 TCTAACACAAGATATTTACGTCGCT 58.442 36.000 0.00 0.00 0.00 4.93
1621 4270 1.604755 CTAGAGCCTTCGTCGCTACAT 59.395 52.381 0.00 0.00 36.48 2.29
1630 4279 0.509929 CGTCGCTACATCATGCATGG 59.490 55.000 25.97 13.66 36.72 3.66
1690 4339 3.414700 CCTGTTCACGCAGACGCC 61.415 66.667 0.00 0.00 45.53 5.68
1762 4411 1.279496 TATGCTGAACTGCTGTCCCT 58.721 50.000 0.00 0.00 0.00 4.20
1764 4413 1.372683 GCTGAACTGCTGTCCCTGA 59.627 57.895 0.00 0.00 0.00 3.86
1772 4421 0.531974 TGCTGTCCCTGACACGTTTC 60.532 55.000 0.00 0.00 37.67 2.78
1917 4572 3.392769 TGCAAATAACGGTTACATCGC 57.607 42.857 2.10 4.86 0.00 4.58
1954 4609 8.156165 AGATAGAATTTCATCTAAAGGCTCCTG 58.844 37.037 0.00 0.00 35.64 3.86
1957 4612 7.352738 AGAATTTCATCTAAAGGCTCCTGAAT 58.647 34.615 0.00 0.00 0.00 2.57
1959 4614 4.327982 TCATCTAAAGGCTCCTGAATCG 57.672 45.455 0.00 0.00 0.00 3.34
1960 4615 2.604046 TCTAAAGGCTCCTGAATCGC 57.396 50.000 0.00 0.00 0.00 4.58
1961 4616 2.111384 TCTAAAGGCTCCTGAATCGCT 58.889 47.619 0.00 0.00 0.00 4.93
1964 4628 2.317530 AAGGCTCCTGAATCGCTAAC 57.682 50.000 0.00 0.00 0.00 2.34
1969 4633 2.362717 GCTCCTGAATCGCTAACCTAGT 59.637 50.000 0.00 0.00 0.00 2.57
1980 4644 2.092914 GCTAACCTAGTCATGGGCAACT 60.093 50.000 0.00 0.00 0.00 3.16
1991 4655 3.128589 TCATGGGCAACTTTATTCGCTTC 59.871 43.478 0.00 0.00 0.00 3.86
1992 4656 1.816224 TGGGCAACTTTATTCGCTTCC 59.184 47.619 0.00 0.00 0.00 3.46
1994 4658 2.092323 GGCAACTTTATTCGCTTCCCT 58.908 47.619 0.00 0.00 0.00 4.20
1995 4659 2.492088 GGCAACTTTATTCGCTTCCCTT 59.508 45.455 0.00 0.00 0.00 3.95
2002 4666 8.455682 CAACTTTATTCGCTTCCCTTTATTACA 58.544 33.333 0.00 0.00 0.00 2.41
2003 4667 8.209917 ACTTTATTCGCTTCCCTTTATTACAG 57.790 34.615 0.00 0.00 0.00 2.74
2008 4672 4.933400 TCGCTTCCCTTTATTACAGTGTTC 59.067 41.667 0.00 0.00 0.00 3.18
2014 4678 7.279750 TCCCTTTATTACAGTGTTCAAAACC 57.720 36.000 0.00 0.00 0.00 3.27
2032 4696 0.329261 CCAATGAACTGCCTCTCCCA 59.671 55.000 0.00 0.00 0.00 4.37
2036 4700 0.764369 TGAACTGCCTCTCCCACACT 60.764 55.000 0.00 0.00 0.00 3.55
2044 4708 4.037222 TGCCTCTCCCACACTATCAATAA 58.963 43.478 0.00 0.00 0.00 1.40
2046 4710 4.621991 CCTCTCCCACACTATCAATAACG 58.378 47.826 0.00 0.00 0.00 3.18
2055 4719 5.509272 CACACTATCAATAACGCAAGCTTTG 59.491 40.000 0.00 0.00 45.62 2.77
2067 4731 3.670627 CGCAAGCTTTGTTAATCACCTCC 60.671 47.826 0.00 0.00 0.00 4.30
2069 4733 4.616835 GCAAGCTTTGTTAATCACCTCCTG 60.617 45.833 0.00 0.00 0.00 3.86
2085 4749 4.229582 ACCTCCTGCAATCCCAACTTATTA 59.770 41.667 0.00 0.00 0.00 0.98
2091 4755 6.071391 CCTGCAATCCCAACTTATTACAAACT 60.071 38.462 0.00 0.00 0.00 2.66
2135 4800 8.352942 AGAAACAACACATTCTTTGTATCTTCC 58.647 33.333 0.00 0.00 36.57 3.46
2136 4801 6.575162 ACAACACATTCTTTGTATCTTCCC 57.425 37.500 0.00 0.00 36.57 3.97
2146 4811 1.283613 TGTATCTTCCCGCCCATTTGT 59.716 47.619 0.00 0.00 0.00 2.83
2149 4814 0.391927 TCTTCCCGCCCATTTGTACG 60.392 55.000 0.00 0.00 0.00 3.67
2150 4815 1.373590 CTTCCCGCCCATTTGTACGG 61.374 60.000 0.00 0.00 45.21 4.02
2159 4824 2.031120 CCATTTGTACGGAATGGGCAT 58.969 47.619 23.41 0.00 46.29 4.40
2160 4825 2.223782 CCATTTGTACGGAATGGGCATG 60.224 50.000 23.41 0.00 46.29 4.06
2174 4839 0.885196 GGCATGTGGGCGAAACTTTA 59.115 50.000 0.00 0.00 33.57 1.85
2186 4851 6.027749 GGGCGAAACTTTAATGTGTCTATTG 58.972 40.000 9.35 0.00 0.00 1.90
2187 4852 6.128117 GGGCGAAACTTTAATGTGTCTATTGA 60.128 38.462 9.35 0.00 0.00 2.57
2219 4884 0.608640 GACACGGGAGAGTTCCATGT 59.391 55.000 0.00 3.26 45.98 3.21
2221 4886 1.825474 ACACGGGAGAGTTCCATGTAG 59.175 52.381 0.00 0.00 45.98 2.74
2222 4887 0.824759 ACGGGAGAGTTCCATGTAGC 59.175 55.000 0.00 0.00 45.98 3.58
2225 4890 1.207329 GGGAGAGTTCCATGTAGCGTT 59.793 52.381 0.00 0.00 45.98 4.84
2227 4892 2.094182 GGAGAGTTCCATGTAGCGTTCA 60.094 50.000 0.00 0.00 43.45 3.18
2233 4906 3.897141 TCCATGTAGCGTTCACCATTA 57.103 42.857 0.00 0.00 0.00 1.90
2234 4907 3.792401 TCCATGTAGCGTTCACCATTAG 58.208 45.455 0.00 0.00 0.00 1.73
2241 4914 3.858247 AGCGTTCACCATTAGTACCTTC 58.142 45.455 0.00 0.00 0.00 3.46
2247 4920 0.249741 CCATTAGTACCTTCGCCGGG 60.250 60.000 2.18 0.00 0.00 5.73
2255 4928 1.227823 CCTTCGCCGGGCATGATAA 60.228 57.895 20.71 3.89 0.00 1.75
2256 4929 0.817634 CCTTCGCCGGGCATGATAAA 60.818 55.000 20.71 2.16 0.00 1.40
2263 4936 3.552684 CGCCGGGCATGATAAATTTCAAT 60.553 43.478 20.71 0.00 0.00 2.57
2269 4942 7.925483 CCGGGCATGATAAATTTCAATTCTTAA 59.075 33.333 0.00 0.00 0.00 1.85
2272 4945 9.822185 GGCATGATAAATTTCAATTCTTAACCT 57.178 29.630 0.00 0.00 0.00 3.50
2283 4956 8.752005 TTCAATTCTTAACCTAGATGGGATTG 57.248 34.615 0.00 0.00 41.11 2.67
2290 4963 5.715439 AACCTAGATGGGATTGACATTGA 57.285 39.130 0.00 0.00 41.11 2.57
2294 4967 5.410746 CCTAGATGGGATTGACATTGATTCG 59.589 44.000 0.00 0.00 0.00 3.34
2295 4968 4.785301 AGATGGGATTGACATTGATTCGT 58.215 39.130 0.00 0.00 0.00 3.85
2307 4980 5.935945 ACATTGATTCGTCCCATACCATTA 58.064 37.500 0.00 0.00 0.00 1.90
2308 4981 5.997746 ACATTGATTCGTCCCATACCATTAG 59.002 40.000 0.00 0.00 0.00 1.73
2312 4985 6.931838 TGATTCGTCCCATACCATTAGTATC 58.068 40.000 0.00 0.00 39.79 2.24
2316 4989 5.245301 TCGTCCCATACCATTAGTATCTTGG 59.755 44.000 0.00 0.00 39.79 3.61
2330 5003 6.347061 AGTATCTTGGAATTTCCTCCCATT 57.653 37.500 16.25 0.38 37.46 3.16
2340 5013 5.645056 ATTTCCTCCCATTTTGTTGGTTT 57.355 34.783 0.00 0.00 34.77 3.27
2346 5019 5.221702 CCTCCCATTTTGTTGGTTTCATTCT 60.222 40.000 0.00 0.00 34.77 2.40
2347 5020 6.014669 CCTCCCATTTTGTTGGTTTCATTCTA 60.015 38.462 0.00 0.00 34.77 2.10
2359 5032 6.065374 TGGTTTCATTCTACCAAACAAGCTA 58.935 36.000 0.00 0.00 41.30 3.32
2361 5034 6.861572 GGTTTCATTCTACCAAACAAGCTAAC 59.138 38.462 0.00 0.00 34.48 2.34
2363 5036 5.626142 TCATTCTACCAAACAAGCTAACCA 58.374 37.500 0.00 0.00 0.00 3.67
2376 5049 4.632538 AGCTAACCAAACAGTGAACAAC 57.367 40.909 0.00 0.00 0.00 3.32
2409 5082 6.662414 TTTGTATAACTCCGAGCAATGAAG 57.338 37.500 0.00 0.00 0.00 3.02
2418 5091 1.325640 CGAGCAATGAAGTCCGACATG 59.674 52.381 0.40 0.00 0.00 3.21
2423 5096 5.670485 AGCAATGAAGTCCGACATGTTATA 58.330 37.500 0.00 0.00 0.00 0.98
2445 5118 3.639094 ACATAGGAAGGAGAATCACGAGG 59.361 47.826 0.00 0.00 36.25 4.63
2460 5133 0.453793 CGAGGACTCGTTGAGCATCT 59.546 55.000 13.23 0.00 46.99 2.90
2474 5147 1.684983 AGCATCTATTGGCCACAATGC 59.315 47.619 23.50 23.50 46.37 3.56
2496 5169 4.802248 GCTTGTCTCACCAAGTCTTCATCT 60.802 45.833 0.00 0.00 43.03 2.90
2529 5202 8.812513 TTGTGACTGGATCAATAAGATTTGAT 57.187 30.769 0.00 0.00 46.39 2.57
2532 5205 9.553064 GTGACTGGATCAATAAGATTTGATACT 57.447 33.333 9.98 0.00 44.17 2.12
2547 5220 8.457261 AGATTTGATACTTTTGACAGAAGATGC 58.543 33.333 12.39 2.17 0.00 3.91
2548 5221 7.750229 TTTGATACTTTTGACAGAAGATGCT 57.250 32.000 12.39 0.00 0.00 3.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 7.954666 TCCTTAAAACCTTTAATGGAGGATG 57.045 36.000 14.04 0.73 37.72 3.51
68 69 1.066430 CCTCTAACCGGCAACTAAGCA 60.066 52.381 0.00 0.00 35.83 3.91
70 71 2.758979 TCTCCTCTAACCGGCAACTAAG 59.241 50.000 0.00 0.00 0.00 2.18
103 104 8.491958 TCCCTAATAAAACATTAGAGAAGGACC 58.508 37.037 5.74 0.00 34.43 4.46
116 117 7.664552 TCTCTAACCGATCCCTAATAAAACA 57.335 36.000 0.00 0.00 0.00 2.83
161 162 4.160439 AGTCTGGATTGATGTATGTGTCGT 59.840 41.667 0.00 0.00 0.00 4.34
209 210 0.623723 TAGGTTTGGGCCCTCATCAC 59.376 55.000 25.70 11.81 33.35 3.06
228 232 6.133356 TGGAGTTCATTGGAGGTTTTTACTT 58.867 36.000 0.00 0.00 0.00 2.24
238 242 6.648192 AGTAGAAGAATGGAGTTCATTGGAG 58.352 40.000 0.00 0.00 45.36 3.86
293 303 1.856265 CGGGTCAGAAAACCTGCAGC 61.856 60.000 8.66 0.00 42.62 5.25
297 307 1.512926 CTGTCGGGTCAGAAAACCTG 58.487 55.000 0.00 0.00 45.59 4.00
316 326 3.651803 AGCATACTAAGATCTCGTGCC 57.348 47.619 0.00 0.00 0.00 5.01
327 337 5.644206 TGATTGGTTTACGCAAGCATACTAA 59.356 36.000 1.07 0.00 42.50 2.24
353 363 5.346181 AGAGCTAAAACTACACATCTCCC 57.654 43.478 0.00 0.00 0.00 4.30
388 398 1.569479 GGGTGACTTCTTGCGAGTGC 61.569 60.000 0.00 0.00 43.20 4.40
389 399 0.951040 GGGGTGACTTCTTGCGAGTG 60.951 60.000 0.00 0.00 0.00 3.51
390 400 1.122019 AGGGGTGACTTCTTGCGAGT 61.122 55.000 0.00 0.00 0.00 4.18
391 401 0.895530 TAGGGGTGACTTCTTGCGAG 59.104 55.000 0.00 0.00 0.00 5.03
392 402 0.895530 CTAGGGGTGACTTCTTGCGA 59.104 55.000 0.00 0.00 0.00 5.10
393 403 0.108138 CCTAGGGGTGACTTCTTGCG 60.108 60.000 0.00 0.00 0.00 4.85
394 404 1.066071 GTCCTAGGGGTGACTTCTTGC 60.066 57.143 9.46 0.00 0.00 4.01
395 405 1.555533 GGTCCTAGGGGTGACTTCTTG 59.444 57.143 9.46 0.00 0.00 3.02
396 406 1.437547 AGGTCCTAGGGGTGACTTCTT 59.562 52.381 9.46 0.00 0.00 2.52
397 407 1.094269 AGGTCCTAGGGGTGACTTCT 58.906 55.000 9.46 0.00 0.00 2.85
398 408 2.668625 CTAGGTCCTAGGGGTGACTTC 58.331 57.143 17.24 0.00 31.03 3.01
399 409 1.343176 GCTAGGTCCTAGGGGTGACTT 60.343 57.143 24.59 0.00 34.88 3.01
400 410 0.262285 GCTAGGTCCTAGGGGTGACT 59.738 60.000 24.59 3.11 34.88 3.41
401 411 1.108132 CGCTAGGTCCTAGGGGTGAC 61.108 65.000 27.81 10.87 41.38 3.67
402 412 1.229359 CGCTAGGTCCTAGGGGTGA 59.771 63.158 27.81 0.00 41.38 4.02
403 413 1.108132 GTCGCTAGGTCCTAGGGGTG 61.108 65.000 32.06 14.71 43.97 4.61
404 414 1.229643 GTCGCTAGGTCCTAGGGGT 59.770 63.158 32.06 0.00 43.97 4.95
405 415 1.897615 CGTCGCTAGGTCCTAGGGG 60.898 68.421 32.06 19.17 43.97 4.79
406 416 0.250814 ATCGTCGCTAGGTCCTAGGG 60.251 60.000 29.01 29.01 44.79 3.53
407 417 0.875728 CATCGTCGCTAGGTCCTAGG 59.124 60.000 24.59 15.60 34.88 3.02
408 418 1.880271 TCATCGTCGCTAGGTCCTAG 58.120 55.000 20.23 20.23 37.16 3.02
409 419 2.336945 TTCATCGTCGCTAGGTCCTA 57.663 50.000 0.00 0.00 0.00 2.94
410 420 1.405821 CTTTCATCGTCGCTAGGTCCT 59.594 52.381 0.00 0.00 0.00 3.85
411 421 1.536284 CCTTTCATCGTCGCTAGGTCC 60.536 57.143 0.00 0.00 0.00 4.46
412 422 1.134560 ACCTTTCATCGTCGCTAGGTC 59.865 52.381 0.00 0.00 30.42 3.85
413 423 1.134560 GACCTTTCATCGTCGCTAGGT 59.865 52.381 0.00 0.00 38.64 3.08
414 424 1.134367 TGACCTTTCATCGTCGCTAGG 59.866 52.381 0.00 0.00 0.00 3.02
415 425 2.455032 CTGACCTTTCATCGTCGCTAG 58.545 52.381 0.00 0.00 0.00 3.42
416 426 1.134367 CCTGACCTTTCATCGTCGCTA 59.866 52.381 0.00 0.00 0.00 4.26
417 427 0.108615 CCTGACCTTTCATCGTCGCT 60.109 55.000 0.00 0.00 0.00 4.93
418 428 1.696832 GCCTGACCTTTCATCGTCGC 61.697 60.000 0.00 0.00 0.00 5.19
419 429 0.108615 AGCCTGACCTTTCATCGTCG 60.109 55.000 0.00 0.00 0.00 5.12
420 430 1.734465 CAAGCCTGACCTTTCATCGTC 59.266 52.381 0.00 0.00 0.00 4.20
421 431 1.813513 CAAGCCTGACCTTTCATCGT 58.186 50.000 0.00 0.00 0.00 3.73
422 432 0.449388 GCAAGCCTGACCTTTCATCG 59.551 55.000 0.00 0.00 0.00 3.84
423 433 1.538047 TGCAAGCCTGACCTTTCATC 58.462 50.000 0.00 0.00 0.00 2.92
424 434 1.999648 TTGCAAGCCTGACCTTTCAT 58.000 45.000 0.00 0.00 0.00 2.57
425 435 1.888512 GATTGCAAGCCTGACCTTTCA 59.111 47.619 2.49 0.00 0.00 2.69
426 436 1.135575 CGATTGCAAGCCTGACCTTTC 60.136 52.381 9.48 0.00 0.00 2.62
427 437 0.883833 CGATTGCAAGCCTGACCTTT 59.116 50.000 9.48 0.00 0.00 3.11
428 438 1.589716 GCGATTGCAAGCCTGACCTT 61.590 55.000 9.48 0.00 42.15 3.50
429 439 2.042831 GCGATTGCAAGCCTGACCT 61.043 57.895 9.48 0.00 42.15 3.85
430 440 2.486966 GCGATTGCAAGCCTGACC 59.513 61.111 9.48 0.00 42.15 4.02
440 450 0.790207 TTTGAGAGACGTGCGATTGC 59.210 50.000 0.00 0.00 43.20 3.56
441 451 1.126846 GGTTTGAGAGACGTGCGATTG 59.873 52.381 0.00 0.00 0.00 2.67
442 452 1.429463 GGTTTGAGAGACGTGCGATT 58.571 50.000 0.00 0.00 0.00 3.34
443 453 0.732880 CGGTTTGAGAGACGTGCGAT 60.733 55.000 0.00 0.00 0.00 4.58
444 454 1.371267 CGGTTTGAGAGACGTGCGA 60.371 57.895 0.00 0.00 0.00 5.10
445 455 0.937699 TTCGGTTTGAGAGACGTGCG 60.938 55.000 0.00 0.00 0.00 5.34
446 456 1.192534 CTTTCGGTTTGAGAGACGTGC 59.807 52.381 0.00 0.00 30.39 5.34
447 457 1.192534 GCTTTCGGTTTGAGAGACGTG 59.807 52.381 0.00 0.00 30.39 4.49
448 458 1.068741 AGCTTTCGGTTTGAGAGACGT 59.931 47.619 0.00 0.00 30.39 4.34
449 459 1.721926 GAGCTTTCGGTTTGAGAGACG 59.278 52.381 0.00 0.00 30.39 4.18
450 460 1.721926 CGAGCTTTCGGTTTGAGAGAC 59.278 52.381 0.00 0.00 30.39 3.36
451 461 1.611977 TCGAGCTTTCGGTTTGAGAGA 59.388 47.619 0.00 0.00 30.39 3.10
452 462 1.989165 CTCGAGCTTTCGGTTTGAGAG 59.011 52.381 0.00 0.00 38.47 3.20
453 463 1.611977 TCTCGAGCTTTCGGTTTGAGA 59.388 47.619 7.81 0.00 41.39 3.27
454 464 1.989165 CTCTCGAGCTTTCGGTTTGAG 59.011 52.381 7.81 0.00 37.82 3.02
455 465 2.065993 CTCTCGAGCTTTCGGTTTGA 57.934 50.000 7.81 0.00 0.00 2.69
467 477 0.455295 GTGAGTTCACGGCTCTCGAG 60.455 60.000 5.93 5.93 42.43 4.04
468 478 1.579932 GTGAGTTCACGGCTCTCGA 59.420 57.895 0.00 0.00 42.43 4.04
469 479 4.154613 GTGAGTTCACGGCTCTCG 57.845 61.111 0.00 0.00 45.88 4.04
477 487 4.220821 TCTTATGTCCTCTGGTGAGTTCAC 59.779 45.833 3.67 3.67 45.72 3.18
478 488 4.416516 TCTTATGTCCTCTGGTGAGTTCA 58.583 43.478 0.00 0.00 38.61 3.18
479 489 5.407407 TTCTTATGTCCTCTGGTGAGTTC 57.593 43.478 0.00 0.00 38.61 3.01
480 490 6.013379 TGAATTCTTATGTCCTCTGGTGAGTT 60.013 38.462 7.05 0.00 38.61 3.01
481 491 5.485353 TGAATTCTTATGTCCTCTGGTGAGT 59.515 40.000 7.05 0.00 38.61 3.41
482 492 5.982356 TGAATTCTTATGTCCTCTGGTGAG 58.018 41.667 7.05 0.00 39.92 3.51
483 493 5.721480 TCTGAATTCTTATGTCCTCTGGTGA 59.279 40.000 7.05 0.00 0.00 4.02
484 494 5.982356 TCTGAATTCTTATGTCCTCTGGTG 58.018 41.667 7.05 0.00 0.00 4.17
485 495 5.130145 CCTCTGAATTCTTATGTCCTCTGGT 59.870 44.000 7.05 0.00 0.00 4.00
486 496 5.609423 CCTCTGAATTCTTATGTCCTCTGG 58.391 45.833 7.05 0.00 0.00 3.86
487 497 5.055812 GCCTCTGAATTCTTATGTCCTCTG 58.944 45.833 7.05 0.00 0.00 3.35
488 498 4.102367 GGCCTCTGAATTCTTATGTCCTCT 59.898 45.833 7.05 0.00 0.00 3.69
489 499 4.102367 AGGCCTCTGAATTCTTATGTCCTC 59.898 45.833 0.00 0.00 0.00 3.71
490 500 4.043596 AGGCCTCTGAATTCTTATGTCCT 58.956 43.478 0.00 3.82 0.00 3.85
491 501 4.141620 TGAGGCCTCTGAATTCTTATGTCC 60.142 45.833 32.28 1.55 0.00 4.02
492 502 4.813697 GTGAGGCCTCTGAATTCTTATGTC 59.186 45.833 32.28 2.27 0.00 3.06
493 503 4.472833 AGTGAGGCCTCTGAATTCTTATGT 59.527 41.667 32.28 0.00 0.00 2.29
494 504 5.033589 AGTGAGGCCTCTGAATTCTTATG 57.966 43.478 32.28 0.00 0.00 1.90
495 505 4.968080 AGAGTGAGGCCTCTGAATTCTTAT 59.032 41.667 32.28 11.15 40.30 1.73
496 506 4.357325 AGAGTGAGGCCTCTGAATTCTTA 58.643 43.478 32.28 6.94 40.30 2.10
497 507 3.180507 AGAGTGAGGCCTCTGAATTCTT 58.819 45.455 32.28 9.55 40.30 2.52
498 508 2.831565 AGAGTGAGGCCTCTGAATTCT 58.168 47.619 32.28 20.27 40.30 2.40
499 509 3.055530 TGAAGAGTGAGGCCTCTGAATTC 60.056 47.826 32.28 26.80 40.93 2.17
500 510 2.909006 TGAAGAGTGAGGCCTCTGAATT 59.091 45.455 32.28 21.09 40.93 2.17
501 511 2.500910 CTGAAGAGTGAGGCCTCTGAAT 59.499 50.000 32.28 13.75 40.93 2.57
502 512 1.898472 CTGAAGAGTGAGGCCTCTGAA 59.102 52.381 32.28 10.99 40.93 3.02
503 513 1.076187 TCTGAAGAGTGAGGCCTCTGA 59.924 52.381 32.28 11.81 40.93 3.27
504 514 1.554836 TCTGAAGAGTGAGGCCTCTG 58.445 55.000 32.28 10.13 40.93 3.35
505 515 2.548464 ATCTGAAGAGTGAGGCCTCT 57.452 50.000 32.28 14.69 43.65 3.69
506 516 4.830046 TGTATATCTGAAGAGTGAGGCCTC 59.170 45.833 26.78 26.78 0.00 4.70
507 517 4.809193 TGTATATCTGAAGAGTGAGGCCT 58.191 43.478 3.86 3.86 0.00 5.19
508 518 4.586841 ACTGTATATCTGAAGAGTGAGGCC 59.413 45.833 0.00 0.00 0.00 5.19
509 519 5.782893 ACTGTATATCTGAAGAGTGAGGC 57.217 43.478 0.00 0.00 0.00 4.70
510 520 9.562408 TTACTACTGTATATCTGAAGAGTGAGG 57.438 37.037 0.00 0.00 0.00 3.86
513 523 9.953697 GGTTTACTACTGTATATCTGAAGAGTG 57.046 37.037 0.00 0.00 0.00 3.51
514 524 8.838365 CGGTTTACTACTGTATATCTGAAGAGT 58.162 37.037 0.00 0.00 0.00 3.24
515 525 9.053840 TCGGTTTACTACTGTATATCTGAAGAG 57.946 37.037 0.00 0.00 34.56 2.85
516 526 8.969260 TCGGTTTACTACTGTATATCTGAAGA 57.031 34.615 0.00 0.00 34.56 2.87
517 527 9.828852 GATCGGTTTACTACTGTATATCTGAAG 57.171 37.037 0.00 0.00 34.56 3.02
518 528 9.346005 TGATCGGTTTACTACTGTATATCTGAA 57.654 33.333 0.00 0.00 34.56 3.02
519 529 8.781196 GTGATCGGTTTACTACTGTATATCTGA 58.219 37.037 0.00 0.00 34.56 3.27
520 530 7.745155 CGTGATCGGTTTACTACTGTATATCTG 59.255 40.741 0.00 0.00 34.56 2.90
521 531 7.658982 TCGTGATCGGTTTACTACTGTATATCT 59.341 37.037 0.00 0.00 37.69 1.98
522 532 7.800767 TCGTGATCGGTTTACTACTGTATATC 58.199 38.462 0.00 0.00 37.69 1.63
523 533 7.734924 TCGTGATCGGTTTACTACTGTATAT 57.265 36.000 0.00 0.00 37.69 0.86
524 534 7.552458 TTCGTGATCGGTTTACTACTGTATA 57.448 36.000 0.00 0.00 37.69 1.47
525 535 6.441093 TTCGTGATCGGTTTACTACTGTAT 57.559 37.500 0.00 0.00 37.69 2.29
526 536 5.878332 TTCGTGATCGGTTTACTACTGTA 57.122 39.130 0.00 0.00 37.69 2.74
527 537 4.771590 TTCGTGATCGGTTTACTACTGT 57.228 40.909 0.00 0.00 37.69 3.55
528 538 5.159209 ACTTTCGTGATCGGTTTACTACTG 58.841 41.667 0.00 0.00 37.69 2.74
529 539 5.382618 ACTTTCGTGATCGGTTTACTACT 57.617 39.130 0.00 0.00 37.69 2.57
530 540 4.560427 GGACTTTCGTGATCGGTTTACTAC 59.440 45.833 0.00 0.00 37.69 2.73
531 541 4.380867 GGGACTTTCGTGATCGGTTTACTA 60.381 45.833 0.00 0.00 37.69 1.82
532 542 3.582780 GGACTTTCGTGATCGGTTTACT 58.417 45.455 0.00 0.00 37.69 2.24
533 543 2.669924 GGGACTTTCGTGATCGGTTTAC 59.330 50.000 0.00 0.00 37.69 2.01
534 544 2.671914 CGGGACTTTCGTGATCGGTTTA 60.672 50.000 0.00 0.00 37.69 2.01
535 545 1.804601 GGGACTTTCGTGATCGGTTT 58.195 50.000 0.00 0.00 37.69 3.27
536 546 0.389426 CGGGACTTTCGTGATCGGTT 60.389 55.000 0.00 0.00 37.69 4.44
537 547 1.214589 CGGGACTTTCGTGATCGGT 59.785 57.895 0.00 0.00 37.69 4.69
538 548 1.518572 CCGGGACTTTCGTGATCGG 60.519 63.158 0.00 0.00 37.69 4.18
539 549 0.389426 AACCGGGACTTTCGTGATCG 60.389 55.000 6.32 0.00 38.55 3.69
540 550 1.076332 CAACCGGGACTTTCGTGATC 58.924 55.000 6.32 0.00 0.00 2.92
541 551 0.953960 GCAACCGGGACTTTCGTGAT 60.954 55.000 6.32 0.00 0.00 3.06
542 552 1.595929 GCAACCGGGACTTTCGTGA 60.596 57.895 6.32 0.00 0.00 4.35
543 553 1.164041 AAGCAACCGGGACTTTCGTG 61.164 55.000 6.32 0.00 0.00 4.35
544 554 1.147600 AAGCAACCGGGACTTTCGT 59.852 52.632 6.32 0.00 0.00 3.85
545 555 1.574428 CAAGCAACCGGGACTTTCG 59.426 57.895 6.32 0.00 0.00 3.46
546 556 1.285950 GCAAGCAACCGGGACTTTC 59.714 57.895 6.32 0.00 0.00 2.62
547 557 2.200337 GGCAAGCAACCGGGACTTT 61.200 57.895 6.32 0.00 0.00 2.66
548 558 2.597510 GGCAAGCAACCGGGACTT 60.598 61.111 6.32 2.81 0.00 3.01
549 559 3.429372 TTGGCAAGCAACCGGGACT 62.429 57.895 6.32 0.00 0.00 3.85
550 560 2.909965 TTGGCAAGCAACCGGGAC 60.910 61.111 6.32 0.00 0.00 4.46
551 561 2.597217 CTTGGCAAGCAACCGGGA 60.597 61.111 15.25 0.00 0.00 5.14
552 562 3.683937 CCTTGGCAAGCAACCGGG 61.684 66.667 21.77 3.25 0.00 5.73
553 563 4.362476 GCCTTGGCAAGCAACCGG 62.362 66.667 21.77 9.10 0.00 5.28
554 564 2.753931 GAAGCCTTGGCAAGCAACCG 62.754 60.000 21.77 8.79 0.00 4.44
555 565 1.005748 GAAGCCTTGGCAAGCAACC 60.006 57.895 21.77 9.15 0.00 3.77
556 566 1.372128 CGAAGCCTTGGCAAGCAAC 60.372 57.895 21.77 12.65 0.00 4.17
557 567 0.895100 ATCGAAGCCTTGGCAAGCAA 60.895 50.000 21.77 3.17 0.00 3.91
558 568 1.303561 ATCGAAGCCTTGGCAAGCA 60.304 52.632 21.77 2.33 0.00 3.91
559 569 1.028868 AGATCGAAGCCTTGGCAAGC 61.029 55.000 21.77 16.23 0.00 4.01
560 570 1.012841 GAGATCGAAGCCTTGGCAAG 58.987 55.000 20.31 20.31 0.00 4.01
561 571 0.324614 TGAGATCGAAGCCTTGGCAA 59.675 50.000 14.54 0.00 0.00 4.52
562 572 0.324614 TTGAGATCGAAGCCTTGGCA 59.675 50.000 14.54 0.00 0.00 4.92
563 573 1.012841 CTTGAGATCGAAGCCTTGGC 58.987 55.000 2.97 2.97 0.00 4.52
564 574 2.275318 GACTTGAGATCGAAGCCTTGG 58.725 52.381 7.28 0.00 0.00 3.61
565 575 2.275318 GGACTTGAGATCGAAGCCTTG 58.725 52.381 7.28 0.00 0.00 3.61
566 576 1.208293 GGGACTTGAGATCGAAGCCTT 59.792 52.381 7.28 0.00 0.00 4.35
567 577 0.827368 GGGACTTGAGATCGAAGCCT 59.173 55.000 7.28 0.00 0.00 4.58
568 578 0.537188 TGGGACTTGAGATCGAAGCC 59.463 55.000 7.28 8.89 0.00 4.35
569 579 2.003301 GTTGGGACTTGAGATCGAAGC 58.997 52.381 7.28 0.00 0.00 3.86
570 580 2.094700 TCGTTGGGACTTGAGATCGAAG 60.095 50.000 0.00 6.10 0.00 3.79
571 581 1.890489 TCGTTGGGACTTGAGATCGAA 59.110 47.619 0.00 0.00 0.00 3.71
572 582 1.201647 GTCGTTGGGACTTGAGATCGA 59.798 52.381 0.00 0.00 42.62 3.59
573 583 1.630148 GTCGTTGGGACTTGAGATCG 58.370 55.000 0.00 0.00 42.62 3.69
574 584 1.736032 CGGTCGTTGGGACTTGAGATC 60.736 57.143 0.00 0.00 45.35 2.75
575 585 0.246635 CGGTCGTTGGGACTTGAGAT 59.753 55.000 0.00 0.00 45.35 2.75
576 586 1.663739 CGGTCGTTGGGACTTGAGA 59.336 57.895 0.00 0.00 45.35 3.27
577 587 2.027625 GCGGTCGTTGGGACTTGAG 61.028 63.158 0.00 0.00 45.35 3.02
578 588 2.029964 GCGGTCGTTGGGACTTGA 59.970 61.111 0.00 0.00 45.35 3.02
579 589 2.027625 GAGCGGTCGTTGGGACTTG 61.028 63.158 0.00 0.00 45.35 3.16
580 590 2.342648 GAGCGGTCGTTGGGACTT 59.657 61.111 0.00 0.00 45.35 3.01
581 591 3.692406 GGAGCGGTCGTTGGGACT 61.692 66.667 8.77 0.00 45.35 3.85
582 592 2.999739 TTTGGAGCGGTCGTTGGGAC 63.000 60.000 8.77 0.00 45.31 4.46
583 593 2.809307 TTTGGAGCGGTCGTTGGGA 61.809 57.895 8.77 0.00 0.00 4.37
584 594 2.281208 TTTGGAGCGGTCGTTGGG 60.281 61.111 8.77 0.00 0.00 4.12
585 595 2.613506 GGTTTGGAGCGGTCGTTGG 61.614 63.158 8.77 0.00 0.00 3.77
586 596 2.943653 GGTTTGGAGCGGTCGTTG 59.056 61.111 8.77 0.00 0.00 4.10
587 597 2.663852 CGGTTTGGAGCGGTCGTT 60.664 61.111 8.77 0.00 42.72 3.85
593 603 4.383602 CGTTGCCGGTTTGGAGCG 62.384 66.667 1.90 0.00 45.81 5.03
603 613 4.093952 CAGCTGCTTCCGTTGCCG 62.094 66.667 0.00 0.00 0.00 5.69
604 614 3.741476 CCAGCTGCTTCCGTTGCC 61.741 66.667 8.66 0.00 0.00 4.52
605 615 4.410743 GCCAGCTGCTTCCGTTGC 62.411 66.667 8.66 0.00 36.87 4.17
617 627 2.817423 CGATTCCAAGCGAGCCAGC 61.817 63.158 0.00 0.00 40.84 4.85
618 628 2.176273 CCGATTCCAAGCGAGCCAG 61.176 63.158 0.00 0.00 40.84 4.85
619 629 2.125147 CCGATTCCAAGCGAGCCA 60.125 61.111 0.00 0.00 40.84 4.75
620 630 2.897350 CCCGATTCCAAGCGAGCC 60.897 66.667 0.00 0.00 40.84 4.70
621 631 2.869503 TTCCCCGATTCCAAGCGAGC 62.870 60.000 0.00 0.00 40.84 5.03
622 632 1.090052 GTTCCCCGATTCCAAGCGAG 61.090 60.000 0.00 0.00 40.84 5.03
623 633 1.078708 GTTCCCCGATTCCAAGCGA 60.079 57.895 0.00 0.00 40.84 4.93
624 634 2.461110 CGTTCCCCGATTCCAAGCG 61.461 63.158 0.00 0.00 39.56 4.68
625 635 1.078708 TCGTTCCCCGATTCCAAGC 60.079 57.895 0.00 0.00 41.60 4.01
633 643 1.746615 CTAGGTCGTCGTTCCCCGA 60.747 63.158 0.00 0.00 45.00 5.14
634 644 2.796651 CTAGGTCGTCGTTCCCCG 59.203 66.667 0.00 0.00 38.13 5.73
635 645 2.493501 GCTAGGTCGTCGTTCCCC 59.506 66.667 0.00 0.00 0.00 4.81
636 646 1.602327 AAGGCTAGGTCGTCGTTCCC 61.602 60.000 0.00 0.00 0.00 3.97
637 647 0.458025 CAAGGCTAGGTCGTCGTTCC 60.458 60.000 0.00 0.00 0.00 3.62
638 648 1.077089 GCAAGGCTAGGTCGTCGTTC 61.077 60.000 0.00 0.00 0.00 3.95
639 649 1.080025 GCAAGGCTAGGTCGTCGTT 60.080 57.895 0.00 0.00 0.00 3.85
640 650 2.572284 GCAAGGCTAGGTCGTCGT 59.428 61.111 0.00 0.00 0.00 4.34
641 651 2.202756 GGCAAGGCTAGGTCGTCG 60.203 66.667 0.00 0.00 0.00 5.12
642 652 1.153549 CTGGCAAGGCTAGGTCGTC 60.154 63.158 0.00 0.00 33.47 4.20
643 653 1.889530 GACTGGCAAGGCTAGGTCGT 61.890 60.000 6.54 0.00 41.48 4.34
644 654 1.153549 GACTGGCAAGGCTAGGTCG 60.154 63.158 6.54 0.00 41.48 4.79
645 655 0.107945 CTGACTGGCAAGGCTAGGTC 60.108 60.000 0.00 6.24 41.48 3.85
646 656 1.986413 CTGACTGGCAAGGCTAGGT 59.014 57.895 0.00 0.00 41.48 3.08
647 657 1.451028 GCTGACTGGCAAGGCTAGG 60.451 63.158 0.00 0.00 41.48 3.02
648 658 1.023513 GTGCTGACTGGCAAGGCTAG 61.024 60.000 0.00 0.00 44.18 3.42
649 659 1.003355 GTGCTGACTGGCAAGGCTA 60.003 57.895 0.00 0.00 44.18 3.93
650 660 2.282040 GTGCTGACTGGCAAGGCT 60.282 61.111 0.00 0.00 44.18 4.58
651 661 3.730761 CGTGCTGACTGGCAAGGC 61.731 66.667 0.00 0.00 44.18 4.35
653 663 2.281070 ACCGTGCTGACTGGCAAG 60.281 61.111 0.00 0.00 44.18 4.01
654 664 2.280797 GACCGTGCTGACTGGCAA 60.281 61.111 0.00 0.00 44.18 4.52
655 665 4.662961 CGACCGTGCTGACTGGCA 62.663 66.667 0.00 0.00 40.15 4.92
657 667 3.991051 ACCGACCGTGCTGACTGG 61.991 66.667 0.00 0.00 0.00 4.00
658 668 2.734723 CACCGACCGTGCTGACTG 60.735 66.667 0.00 0.00 35.18 3.51
666 676 4.640855 CAGTGCGACACCGACCGT 62.641 66.667 6.39 0.00 38.22 4.83
678 688 1.344942 CTCGTCTTGTACCGCAGTGC 61.345 60.000 4.58 4.58 0.00 4.40
679 689 1.344942 GCTCGTCTTGTACCGCAGTG 61.345 60.000 0.00 0.00 0.00 3.66
680 690 1.080705 GCTCGTCTTGTACCGCAGT 60.081 57.895 0.00 0.00 0.00 4.40
681 691 1.805945 GGCTCGTCTTGTACCGCAG 60.806 63.158 0.00 0.00 0.00 5.18
682 692 2.260434 GGCTCGTCTTGTACCGCA 59.740 61.111 0.00 0.00 0.00 5.69
683 693 1.805945 CTGGCTCGTCTTGTACCGC 60.806 63.158 0.00 0.00 0.00 5.68
684 694 1.805945 GCTGGCTCGTCTTGTACCG 60.806 63.158 0.00 0.00 0.00 4.02
685 695 1.805945 CGCTGGCTCGTCTTGTACC 60.806 63.158 0.00 0.00 0.00 3.34
686 696 2.445438 GCGCTGGCTCGTCTTGTAC 61.445 63.158 0.00 0.00 35.83 2.90
687 697 2.126071 GCGCTGGCTCGTCTTGTA 60.126 61.111 0.00 0.00 35.83 2.41
695 705 3.869272 CATTCCACGCGCTGGCTC 61.869 66.667 19.00 0.00 40.39 4.70
698 708 2.745884 TTCCATTCCACGCGCTGG 60.746 61.111 18.07 18.07 42.29 4.85
699 709 2.480555 GTTCCATTCCACGCGCTG 59.519 61.111 5.73 3.55 0.00 5.18
700 710 3.118454 CGTTCCATTCCACGCGCT 61.118 61.111 5.73 0.00 0.00 5.92
701 711 4.160635 CCGTTCCATTCCACGCGC 62.161 66.667 5.73 0.00 34.98 6.86
702 712 1.847890 AAACCGTTCCATTCCACGCG 61.848 55.000 3.53 3.53 34.98 6.01
703 713 0.109919 GAAACCGTTCCATTCCACGC 60.110 55.000 0.00 0.00 34.98 5.34
704 714 0.165079 CGAAACCGTTCCATTCCACG 59.835 55.000 0.00 0.00 36.12 4.94
705 715 0.519961 CCGAAACCGTTCCATTCCAC 59.480 55.000 0.00 0.00 0.00 4.02
706 716 1.238625 GCCGAAACCGTTCCATTCCA 61.239 55.000 0.00 0.00 0.00 3.53
707 717 0.958876 AGCCGAAACCGTTCCATTCC 60.959 55.000 0.00 0.00 0.00 3.01
708 718 0.446616 GAGCCGAAACCGTTCCATTC 59.553 55.000 0.00 0.00 0.00 2.67
709 719 0.250553 TGAGCCGAAACCGTTCCATT 60.251 50.000 0.00 0.00 0.00 3.16
710 720 0.953960 GTGAGCCGAAACCGTTCCAT 60.954 55.000 0.00 0.00 0.00 3.41
711 721 1.595929 GTGAGCCGAAACCGTTCCA 60.596 57.895 0.00 0.00 0.00 3.53
712 722 2.322830 GGTGAGCCGAAACCGTTCC 61.323 63.158 0.00 0.00 0.00 3.62
713 723 3.250986 GGTGAGCCGAAACCGTTC 58.749 61.111 0.00 0.00 0.00 3.95
734 744 2.794627 GATCGATCTCTCAGCGGCCG 62.795 65.000 24.05 24.05 0.00 6.13
735 745 1.080839 GATCGATCTCTCAGCGGCC 60.081 63.158 18.29 0.00 0.00 6.13
736 746 1.441849 CGATCGATCTCTCAGCGGC 60.442 63.158 22.43 0.00 0.00 6.53
737 747 0.801872 ATCGATCGATCTCTCAGCGG 59.198 55.000 24.60 5.20 0.00 5.52
738 748 2.158017 GATCGATCGATCTCTCAGCG 57.842 55.000 38.45 8.81 45.42 5.18
739 749 1.132262 GGGATCGATCGATCTCTCAGC 59.868 57.143 41.33 29.10 45.90 4.26
747 757 0.701731 AGGAGGAGGGATCGATCGAT 59.298 55.000 29.76 29.76 37.59 3.59
748 758 0.037017 GAGGAGGAGGGATCGATCGA 59.963 60.000 21.86 21.86 0.00 3.59
749 759 0.963355 GGAGGAGGAGGGATCGATCG 60.963 65.000 18.81 9.36 0.00 3.69
750 760 0.407918 AGGAGGAGGAGGGATCGATC 59.592 60.000 17.36 17.36 0.00 3.69
751 761 0.407918 GAGGAGGAGGAGGGATCGAT 59.592 60.000 0.00 0.00 0.00 3.59
752 762 1.721093 GGAGGAGGAGGAGGGATCGA 61.721 65.000 0.00 0.00 0.00 3.59
753 763 1.228737 GGAGGAGGAGGAGGGATCG 60.229 68.421 0.00 0.00 0.00 3.69
754 764 0.114364 GAGGAGGAGGAGGAGGGATC 59.886 65.000 0.00 0.00 0.00 3.36
755 765 1.376249 GGAGGAGGAGGAGGAGGGAT 61.376 65.000 0.00 0.00 0.00 3.85
756 766 2.015726 GGAGGAGGAGGAGGAGGGA 61.016 68.421 0.00 0.00 0.00 4.20
757 767 1.598856 AAGGAGGAGGAGGAGGAGGG 61.599 65.000 0.00 0.00 0.00 4.30
758 768 0.341609 AAAGGAGGAGGAGGAGGAGG 59.658 60.000 0.00 0.00 0.00 4.30
759 769 1.290732 AGAAAGGAGGAGGAGGAGGAG 59.709 57.143 0.00 0.00 0.00 3.69
760 770 1.398799 AGAAAGGAGGAGGAGGAGGA 58.601 55.000 0.00 0.00 0.00 3.71
761 771 2.115427 GAAGAAAGGAGGAGGAGGAGG 58.885 57.143 0.00 0.00 0.00 4.30
762 772 3.031013 GAGAAGAAAGGAGGAGGAGGAG 58.969 54.545 0.00 0.00 0.00 3.69
763 773 2.657459 AGAGAAGAAAGGAGGAGGAGGA 59.343 50.000 0.00 0.00 0.00 3.71
764 774 3.114643 AGAGAAGAAAGGAGGAGGAGG 57.885 52.381 0.00 0.00 0.00 4.30
765 775 3.130340 CGAAGAGAAGAAAGGAGGAGGAG 59.870 52.174 0.00 0.00 0.00 3.69
766 776 3.093057 CGAAGAGAAGAAAGGAGGAGGA 58.907 50.000 0.00 0.00 0.00 3.71
767 777 2.418060 GCGAAGAGAAGAAAGGAGGAGG 60.418 54.545 0.00 0.00 0.00 4.30
768 778 2.495669 AGCGAAGAGAAGAAAGGAGGAG 59.504 50.000 0.00 0.00 0.00 3.69
769 779 2.530701 AGCGAAGAGAAGAAAGGAGGA 58.469 47.619 0.00 0.00 0.00 3.71
770 780 2.999355 CAAGCGAAGAGAAGAAAGGAGG 59.001 50.000 0.00 0.00 0.00 4.30
771 781 2.414825 GCAAGCGAAGAGAAGAAAGGAG 59.585 50.000 0.00 0.00 0.00 3.69
772 782 2.417719 GCAAGCGAAGAGAAGAAAGGA 58.582 47.619 0.00 0.00 0.00 3.36
773 783 1.466558 GGCAAGCGAAGAGAAGAAAGG 59.533 52.381 0.00 0.00 0.00 3.11
774 784 2.096019 GTGGCAAGCGAAGAGAAGAAAG 60.096 50.000 0.00 0.00 0.00 2.62
775 785 1.873591 GTGGCAAGCGAAGAGAAGAAA 59.126 47.619 0.00 0.00 0.00 2.52
776 786 1.202639 TGTGGCAAGCGAAGAGAAGAA 60.203 47.619 0.00 0.00 0.00 2.52
777 787 0.392706 TGTGGCAAGCGAAGAGAAGA 59.607 50.000 0.00 0.00 0.00 2.87
778 788 0.514691 GTGTGGCAAGCGAAGAGAAG 59.485 55.000 0.00 0.00 0.00 2.85
779 789 0.106708 AGTGTGGCAAGCGAAGAGAA 59.893 50.000 0.00 0.00 0.00 2.87
780 790 0.966179 TAGTGTGGCAAGCGAAGAGA 59.034 50.000 0.00 0.00 0.00 3.10
781 791 2.015736 ATAGTGTGGCAAGCGAAGAG 57.984 50.000 0.00 0.00 0.00 2.85
782 792 2.472695 AATAGTGTGGCAAGCGAAGA 57.527 45.000 0.00 0.00 0.00 2.87
783 793 3.559238 AAAATAGTGTGGCAAGCGAAG 57.441 42.857 0.00 0.00 0.00 3.79
784 794 4.069304 AGTAAAATAGTGTGGCAAGCGAA 58.931 39.130 0.00 0.00 0.00 4.70
785 795 3.670625 AGTAAAATAGTGTGGCAAGCGA 58.329 40.909 0.00 0.00 0.00 4.93
786 796 4.630069 ACTAGTAAAATAGTGTGGCAAGCG 59.370 41.667 0.00 0.00 34.68 4.68
787 797 6.237755 CGTACTAGTAAAATAGTGTGGCAAGC 60.238 42.308 3.61 0.00 36.66 4.01
788 798 6.810182 ACGTACTAGTAAAATAGTGTGGCAAG 59.190 38.462 3.61 0.00 36.66 4.01
789 799 6.690530 ACGTACTAGTAAAATAGTGTGGCAA 58.309 36.000 3.61 0.00 36.66 4.52
790 800 6.271488 ACGTACTAGTAAAATAGTGTGGCA 57.729 37.500 3.61 0.00 36.66 4.92
791 801 8.131100 TCATACGTACTAGTAAAATAGTGTGGC 58.869 37.037 3.61 0.00 36.66 5.01
807 817 9.181805 CGATTTGTTAATCAGATCATACGTACT 57.818 33.333 0.00 0.00 40.17 2.73
808 818 8.965172 ACGATTTGTTAATCAGATCATACGTAC 58.035 33.333 0.00 0.00 40.17 3.67
809 819 9.177304 GACGATTTGTTAATCAGATCATACGTA 57.823 33.333 0.00 0.00 40.17 3.57
810 820 7.096599 CGACGATTTGTTAATCAGATCATACGT 60.097 37.037 0.00 0.00 40.17 3.57
811 821 7.213814 CGACGATTTGTTAATCAGATCATACG 58.786 38.462 0.00 0.00 40.17 3.06
812 822 7.004225 GCGACGATTTGTTAATCAGATCATAC 58.996 38.462 0.00 0.00 40.17 2.39
813 823 6.699642 TGCGACGATTTGTTAATCAGATCATA 59.300 34.615 0.00 0.00 40.17 2.15
814 824 5.523552 TGCGACGATTTGTTAATCAGATCAT 59.476 36.000 0.00 0.00 40.17 2.45
815 825 4.867608 TGCGACGATTTGTTAATCAGATCA 59.132 37.500 0.00 0.00 40.17 2.92
816 826 5.005779 AGTGCGACGATTTGTTAATCAGATC 59.994 40.000 0.00 0.00 40.17 2.75
817 827 4.870426 AGTGCGACGATTTGTTAATCAGAT 59.130 37.500 0.00 0.00 40.17 2.90
818 828 4.242475 AGTGCGACGATTTGTTAATCAGA 58.758 39.130 0.00 0.00 40.17 3.27
819 829 4.584029 AGTGCGACGATTTGTTAATCAG 57.416 40.909 0.00 0.00 40.17 2.90
820 830 4.377943 CCAAGTGCGACGATTTGTTAATCA 60.378 41.667 0.00 0.00 40.17 2.57
821 831 4.088648 CCAAGTGCGACGATTTGTTAATC 58.911 43.478 0.00 0.00 37.40 1.75
822 832 3.669557 GCCAAGTGCGACGATTTGTTAAT 60.670 43.478 0.00 0.00 0.00 1.40
823 833 2.350007 GCCAAGTGCGACGATTTGTTAA 60.350 45.455 0.00 0.00 0.00 2.01
824 834 1.195900 GCCAAGTGCGACGATTTGTTA 59.804 47.619 0.00 0.00 0.00 2.41
825 835 0.040425 GCCAAGTGCGACGATTTGTT 60.040 50.000 0.00 0.00 0.00 2.83
890 905 4.214332 GCGTCTGAATGAAGGAAAAGAAGT 59.786 41.667 0.00 0.00 0.00 3.01
901 916 2.378445 TTCGGATGCGTCTGAATGAA 57.622 45.000 23.49 4.52 43.17 2.57
942 962 3.728385 AGCTAGGAGAGGCAAAAATGT 57.272 42.857 0.00 0.00 0.00 2.71
976 1023 0.888619 CAAGTCAGACGACCAGGCTA 59.111 55.000 0.00 0.00 43.73 3.93
1030 1084 1.164041 ACGGAGGTTGTTTCGGCTTG 61.164 55.000 0.00 0.00 0.00 4.01
1031 1085 0.883370 GACGGAGGTTGTTTCGGCTT 60.883 55.000 0.00 0.00 0.00 4.35
1032 1086 1.301479 GACGGAGGTTGTTTCGGCT 60.301 57.895 0.00 0.00 0.00 5.52
1264 1336 3.994853 GTGCACCTTGGGCTTGGC 61.995 66.667 5.22 0.00 30.56 4.52
1419 3718 1.192534 GTTGTCTTCTTCTTGCCGTCG 59.807 52.381 0.00 0.00 0.00 5.12
1454 3753 2.159366 ACGTTCAGGTCGATCATCAGTC 60.159 50.000 0.00 0.00 0.00 3.51
1580 4229 7.696755 TCTAGCGACGTAAATATCTTGTGTTA 58.303 34.615 0.00 0.00 0.00 2.41
1602 4251 1.602851 GATGTAGCGACGAAGGCTCTA 59.397 52.381 0.00 0.00 41.80 2.43
1744 4393 0.322277 CAGGGACAGCAGTTCAGCAT 60.322 55.000 0.00 0.00 36.85 3.79
1762 4411 1.948104 CTTCACCAGGAAACGTGTCA 58.052 50.000 8.27 0.00 34.44 3.58
1764 4413 0.818040 GGCTTCACCAGGAAACGTGT 60.818 55.000 0.00 0.00 38.86 4.49
1772 4421 2.358737 GACACCGGCTTCACCAGG 60.359 66.667 0.00 0.00 39.03 4.45
1803 4452 4.154347 CAGGTCCGCTGCCTCCTC 62.154 72.222 0.00 0.00 33.31 3.71
1810 4459 0.108898 CAGAAGAGTCAGGTCCGCTG 60.109 60.000 0.00 0.00 0.00 5.18
1881 4536 8.859156 CGTTATTTGCAATTAACAAAGCTATGT 58.141 29.630 29.49 0.00 40.14 2.29
1889 4544 9.130312 GATGTAACCGTTATTTGCAATTAACAA 57.870 29.630 29.49 16.69 0.00 2.83
1895 4550 4.347813 GCGATGTAACCGTTATTTGCAAT 58.652 39.130 0.00 0.00 0.00 3.56
1896 4551 3.426426 GGCGATGTAACCGTTATTTGCAA 60.426 43.478 0.00 0.00 0.00 4.08
1933 4588 7.519649 CGATTCAGGAGCCTTTAGATGAAATTC 60.520 40.741 0.00 0.00 31.14 2.17
1934 4589 6.261826 CGATTCAGGAGCCTTTAGATGAAATT 59.738 38.462 0.00 0.00 31.14 1.82
1954 4609 3.654414 CCCATGACTAGGTTAGCGATTC 58.346 50.000 0.00 0.00 0.00 2.52
1957 4612 0.750850 GCCCATGACTAGGTTAGCGA 59.249 55.000 0.00 0.00 0.00 4.93
1959 4614 2.092914 AGTTGCCCATGACTAGGTTAGC 60.093 50.000 0.00 0.00 0.00 3.09
1960 4615 3.914426 AGTTGCCCATGACTAGGTTAG 57.086 47.619 0.00 0.00 0.00 2.34
1961 4616 4.650972 AAAGTTGCCCATGACTAGGTTA 57.349 40.909 0.00 0.00 0.00 2.85
1964 4628 4.273480 CGAATAAAGTTGCCCATGACTAGG 59.727 45.833 0.00 0.00 0.00 3.02
1969 4633 2.722094 AGCGAATAAAGTTGCCCATGA 58.278 42.857 0.00 0.00 0.00 3.07
1980 4644 7.608761 ACACTGTAATAAAGGGAAGCGAATAAA 59.391 33.333 0.00 0.00 0.00 1.40
1991 4655 7.045126 TGGTTTTGAACACTGTAATAAAGGG 57.955 36.000 0.00 0.00 0.00 3.95
1992 4656 8.977505 CATTGGTTTTGAACACTGTAATAAAGG 58.022 33.333 0.00 0.00 0.00 3.11
2008 4672 3.305608 GGAGAGGCAGTTCATTGGTTTTG 60.306 47.826 0.00 0.00 0.00 2.44
2014 4678 1.271543 TGTGGGAGAGGCAGTTCATTG 60.272 52.381 0.00 0.00 0.00 2.82
2022 4686 1.951209 TTGATAGTGTGGGAGAGGCA 58.049 50.000 0.00 0.00 0.00 4.75
2032 4696 5.181245 ACAAAGCTTGCGTTATTGATAGTGT 59.819 36.000 0.00 0.00 0.00 3.55
2036 4700 8.454894 TGATTAACAAAGCTTGCGTTATTGATA 58.545 29.630 17.74 7.37 0.00 2.15
2044 4708 2.884639 AGGTGATTAACAAAGCTTGCGT 59.115 40.909 0.00 0.00 0.00 5.24
2046 4710 3.507622 AGGAGGTGATTAACAAAGCTTGC 59.492 43.478 0.00 0.00 0.00 4.01
2055 4719 2.952310 GGGATTGCAGGAGGTGATTAAC 59.048 50.000 0.00 0.00 0.00 2.01
2067 4731 6.924111 AGTTTGTAATAAGTTGGGATTGCAG 58.076 36.000 0.00 0.00 30.79 4.41
2069 4733 7.602753 AGAAGTTTGTAATAAGTTGGGATTGC 58.397 34.615 0.00 0.00 0.00 3.56
2085 4749 5.643379 TGTCAGAAAGCAAAGAAGTTTGT 57.357 34.783 0.23 0.00 44.37 2.83
2117 4782 3.065371 GGCGGGAAGATACAAAGAATGTG 59.935 47.826 0.00 0.00 43.77 3.21
2120 4785 2.241176 TGGGCGGGAAGATACAAAGAAT 59.759 45.455 0.00 0.00 0.00 2.40
2122 4787 1.281419 TGGGCGGGAAGATACAAAGA 58.719 50.000 0.00 0.00 0.00 2.52
2123 4788 2.348411 ATGGGCGGGAAGATACAAAG 57.652 50.000 0.00 0.00 0.00 2.77
2135 4800 0.380378 CATTCCGTACAAATGGGCGG 59.620 55.000 10.34 10.34 44.95 6.13
2136 4801 0.380378 CCATTCCGTACAAATGGGCG 59.620 55.000 21.45 4.58 46.24 6.13
2146 4811 1.225983 CCCACATGCCCATTCCGTA 59.774 57.895 0.00 0.00 0.00 4.02
2149 4814 3.530260 CGCCCACATGCCCATTCC 61.530 66.667 0.00 0.00 0.00 3.01
2150 4815 1.603236 TTTCGCCCACATGCCCATTC 61.603 55.000 0.00 0.00 0.00 2.67
2151 4816 1.608918 TTTCGCCCACATGCCCATT 60.609 52.632 0.00 0.00 0.00 3.16
2159 4824 2.952978 ACACATTAAAGTTTCGCCCACA 59.047 40.909 0.00 0.00 0.00 4.17
2160 4825 3.252458 AGACACATTAAAGTTTCGCCCAC 59.748 43.478 0.00 0.00 0.00 4.61
2174 4839 9.397513 CGTGTTACGCTTGTCAATAGACACATT 62.398 40.741 0.00 0.00 44.11 2.71
2186 4851 0.158096 CGTGTCGTGTTACGCTTGTC 59.842 55.000 0.00 0.00 42.21 3.18
2187 4852 1.210545 CCGTGTCGTGTTACGCTTGT 61.211 55.000 0.00 0.00 42.21 3.16
2219 4884 4.439153 CGAAGGTACTAATGGTGAACGCTA 60.439 45.833 0.00 0.00 38.49 4.26
2221 4886 2.601763 CGAAGGTACTAATGGTGAACGC 59.398 50.000 0.00 0.00 38.49 4.84
2222 4887 2.601763 GCGAAGGTACTAATGGTGAACG 59.398 50.000 0.00 0.00 38.49 3.95
2225 4890 1.135527 CGGCGAAGGTACTAATGGTGA 59.864 52.381 0.00 0.00 38.49 4.02
2227 4892 0.462789 CCGGCGAAGGTACTAATGGT 59.537 55.000 9.30 0.00 38.49 3.55
2234 4907 2.660258 ATCATGCCCGGCGAAGGTAC 62.660 60.000 9.30 0.00 0.00 3.34
2241 4914 1.336440 TGAAATTTATCATGCCCGGCG 59.664 47.619 4.58 0.00 0.00 6.46
2255 4928 9.942526 ATCCCATCTAGGTTAAGAATTGAAATT 57.057 29.630 0.00 0.00 34.66 1.82
2256 4929 9.942526 AATCCCATCTAGGTTAAGAATTGAAAT 57.057 29.630 0.00 0.00 34.66 2.17
2263 4936 6.884472 TGTCAATCCCATCTAGGTTAAGAA 57.116 37.500 0.00 0.00 34.66 2.52
2269 4942 5.919348 ATCAATGTCAATCCCATCTAGGT 57.081 39.130 0.00 0.00 34.66 3.08
2272 4945 5.928976 ACGAATCAATGTCAATCCCATCTA 58.071 37.500 0.00 0.00 0.00 1.98
2277 4950 2.618709 GGGACGAATCAATGTCAATCCC 59.381 50.000 0.00 0.00 36.83 3.85
2283 4956 3.804036 TGGTATGGGACGAATCAATGTC 58.196 45.455 0.00 0.00 0.00 3.06
2290 4963 7.386851 CAAGATACTAATGGTATGGGACGAAT 58.613 38.462 0.00 0.00 40.82 3.34
2294 4967 6.681729 TCCAAGATACTAATGGTATGGGAC 57.318 41.667 0.00 0.00 40.82 4.46
2295 4968 7.888514 ATTCCAAGATACTAATGGTATGGGA 57.111 36.000 0.00 0.00 40.82 4.37
2307 4980 6.347061 AATGGGAGGAAATTCCAAGATACT 57.653 37.500 15.21 0.00 39.61 2.12
2308 4981 7.093333 ACAAAATGGGAGGAAATTCCAAGATAC 60.093 37.037 15.21 0.00 39.61 2.24
2312 4985 5.488262 ACAAAATGGGAGGAAATTCCAAG 57.512 39.130 15.21 0.00 39.61 3.61
2316 4989 5.227569 ACCAACAAAATGGGAGGAAATTC 57.772 39.130 0.00 0.00 45.18 2.17
2340 5013 5.626142 TGGTTAGCTTGTTTGGTAGAATGA 58.374 37.500 0.00 0.00 0.00 2.57
2346 5019 4.951094 ACTGTTTGGTTAGCTTGTTTGGTA 59.049 37.500 0.00 0.00 0.00 3.25
2347 5020 3.767131 ACTGTTTGGTTAGCTTGTTTGGT 59.233 39.130 0.00 0.00 0.00 3.67
2353 5026 4.630894 TGTTCACTGTTTGGTTAGCTTG 57.369 40.909 0.00 0.00 0.00 4.01
2359 5032 2.530701 TGGGTTGTTCACTGTTTGGTT 58.469 42.857 0.00 0.00 0.00 3.67
2361 5034 3.817709 AATGGGTTGTTCACTGTTTGG 57.182 42.857 0.00 0.00 0.00 3.28
2386 5059 6.170506 ACTTCATTGCTCGGAGTTATACAAA 58.829 36.000 6.90 0.00 0.00 2.83
2387 5060 5.730550 ACTTCATTGCTCGGAGTTATACAA 58.269 37.500 6.90 2.38 0.00 2.41
2388 5061 5.339008 ACTTCATTGCTCGGAGTTATACA 57.661 39.130 6.90 0.00 0.00 2.29
2399 5072 2.350522 ACATGTCGGACTTCATTGCTC 58.649 47.619 9.88 0.00 0.00 4.26
2409 5082 6.015688 TCCTTCCTATGTATAACATGTCGGAC 60.016 42.308 0.00 0.00 39.53 4.79
2418 5091 7.883217 TCGTGATTCTCCTTCCTATGTATAAC 58.117 38.462 0.00 0.00 0.00 1.89
2423 5096 3.639094 CCTCGTGATTCTCCTTCCTATGT 59.361 47.826 0.00 0.00 0.00 2.29
2445 5118 2.541762 GCCAATAGATGCTCAACGAGTC 59.458 50.000 0.00 0.00 31.39 3.36
2450 5123 2.368439 TGTGGCCAATAGATGCTCAAC 58.632 47.619 7.24 0.00 0.00 3.18
2496 5169 9.695526 CTTATTGATCCAGTCACAAATTTTTGA 57.304 29.630 9.88 2.88 41.23 2.69
2525 5198 6.372659 GGAGCATCTTCTGTCAAAAGTATCAA 59.627 38.462 0.00 0.00 33.73 2.57
2529 5202 4.287067 AGGGAGCATCTTCTGTCAAAAGTA 59.713 41.667 0.00 0.00 33.73 2.24
2532 5205 3.560025 GGAGGGAGCATCTTCTGTCAAAA 60.560 47.826 0.00 0.00 33.73 2.44
2540 5213 2.158385 TCCTAGAGGAGGGAGCATCTTC 60.158 54.545 0.00 0.00 46.70 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.