Multiple sequence alignment - TraesCS4A01G100900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G100900 chr4A 100.000 4019 0 0 1 4019 113333148 113329130 0.000000e+00 7422.0
1 TraesCS4A01G100900 chr4A 100.000 30 0 0 3169 3198 446589718 446589689 5.610000e-04 56.5
2 TraesCS4A01G100900 chr4B 92.195 3062 148 41 1 3032 435487515 435484515 0.000000e+00 4246.0
3 TraesCS4A01G100900 chr4B 89.674 184 19 0 3197 3380 435484336 435484153 6.720000e-58 235.0
4 TraesCS4A01G100900 chr4B 88.333 120 9 1 3905 4019 122034701 122034582 5.420000e-29 139.0
5 TraesCS4A01G100900 chr4B 93.827 81 3 2 3033 3112 435484477 435484398 1.960000e-23 121.0
6 TraesCS4A01G100900 chr4D 93.618 2648 96 24 428 3030 352117497 352120116 0.000000e+00 3886.0
7 TraesCS4A01G100900 chr4D 81.785 549 73 13 1 531 352117029 352117568 6.170000e-118 435.0
8 TraesCS4A01G100900 chr4D 89.706 136 12 1 3202 3337 352120293 352120426 5.340000e-39 172.0
9 TraesCS4A01G100900 chr4D 89.000 100 7 2 3851 3950 329303968 329303873 1.960000e-23 121.0
10 TraesCS4A01G100900 chr4D 94.444 72 4 0 3948 4019 477394974 477394903 1.180000e-20 111.0
11 TraesCS4A01G100900 chr4D 95.122 41 2 0 3129 3169 230489540 230489580 9.320000e-07 65.8
12 TraesCS4A01G100900 chr3D 78.361 2075 338 71 1018 3021 558784184 558786218 0.000000e+00 1242.0
13 TraesCS4A01G100900 chr3D 90.508 295 26 2 3559 3852 284867576 284867869 4.870000e-104 388.0
14 TraesCS4A01G100900 chr3D 90.444 293 27 1 3560 3852 246026249 246026540 6.300000e-103 385.0
15 TraesCS4A01G100900 chr3D 86.022 93 9 3 3851 3943 592910399 592910487 3.310000e-16 97.1
16 TraesCS4A01G100900 chr3D 86.667 60 6 2 3135 3193 221522095 221522037 9.320000e-07 65.8
17 TraesCS4A01G100900 chr3D 97.222 36 0 1 429 463 599365323 599365288 4.340000e-05 60.2
18 TraesCS4A01G100900 chr3D 100.000 29 0 0 3169 3197 79601724 79601752 2.000000e-03 54.7
19 TraesCS4A01G100900 chr3B 80.175 1715 262 48 1361 3021 741601379 741603069 0.000000e+00 1212.0
20 TraesCS4A01G100900 chr3A 80.049 1639 265 38 1435 3021 695130593 695132221 0.000000e+00 1158.0
21 TraesCS4A01G100900 chr3A 95.833 72 3 0 3948 4019 511872292 511872363 2.540000e-22 117.0
22 TraesCS4A01G100900 chr3A 95.833 72 3 0 3948 4019 605072945 605072874 2.540000e-22 117.0
23 TraesCS4A01G100900 chr3A 84.483 116 12 5 3904 4019 115159144 115159035 4.250000e-20 110.0
24 TraesCS4A01G100900 chr3A 98.305 59 1 0 3846 3904 200941900 200941958 1.980000e-18 104.0
25 TraesCS4A01G100900 chr3A 97.222 36 1 0 428 463 204821986 204821951 1.210000e-05 62.1
26 TraesCS4A01G100900 chr1A 79.239 1209 192 40 1463 2640 23816619 23817799 0.000000e+00 787.0
27 TraesCS4A01G100900 chr1A 91.186 295 24 2 3559 3852 109967555 109967848 2.250000e-107 399.0
28 TraesCS4A01G100900 chr1A 94.444 72 4 0 3948 4019 359242491 359242420 1.180000e-20 111.0
29 TraesCS4A01G100900 chr1A 96.721 61 2 0 3844 3904 512639053 512639113 7.110000e-18 102.0
30 TraesCS4A01G100900 chr1A 95.122 41 2 0 3129 3169 375114042 375114082 9.320000e-07 65.8
31 TraesCS4A01G100900 chr1D 79.084 1157 191 36 1517 2643 22625531 22624396 0.000000e+00 749.0
32 TraesCS4A01G100900 chr1D 89.869 306 27 4 3559 3863 259825671 259825369 1.350000e-104 390.0
33 TraesCS4A01G100900 chr1D 91.304 46 4 0 419 464 15308250 15308295 3.350000e-06 63.9
34 TraesCS4A01G100900 chr1D 90.476 42 3 1 3157 3197 51734369 51734410 2.000000e-03 54.7
35 TraesCS4A01G100900 chr1D 100.000 29 0 0 3169 3197 206091414 206091442 2.000000e-03 54.7
36 TraesCS4A01G100900 chr1B 77.849 1255 213 47 1430 2647 38832446 38833672 0.000000e+00 717.0
37 TraesCS4A01G100900 chr1B 97.436 39 1 0 3131 3169 402095550 402095512 2.590000e-07 67.6
38 TraesCS4A01G100900 chr1B 100.000 32 0 0 3169 3200 334287359 334287328 4.340000e-05 60.2
39 TraesCS4A01G100900 chr6D 91.864 295 22 2 3559 3852 218744035 218744328 1.040000e-110 411.0
40 TraesCS4A01G100900 chr6D 95.337 193 9 0 3397 3589 947888 948080 1.400000e-79 307.0
41 TraesCS4A01G100900 chr6D 86.047 86 7 3 383 468 37519846 37519766 1.990000e-13 87.9
42 TraesCS4A01G100900 chr2A 91.186 295 24 2 3559 3852 374072687 374072394 2.250000e-107 399.0
43 TraesCS4A01G100900 chr2A 94.898 196 10 0 3394 3589 755057144 755057339 1.400000e-79 307.0
44 TraesCS4A01G100900 chr2A 85.517 290 37 5 3491 3777 712304768 712304481 8.440000e-77 298.0
45 TraesCS4A01G100900 chr5A 84.223 412 59 4 3497 3905 488422855 488422447 2.910000e-106 396.0
46 TraesCS4A01G100900 chr5A 95.337 193 9 0 3397 3589 465260195 465260003 1.400000e-79 307.0
47 TraesCS4A01G100900 chr5A 94.444 72 4 0 3948 4019 693552165 693552094 1.180000e-20 111.0
48 TraesCS4A01G100900 chr5A 93.182 44 2 1 432 475 568680039 568679997 3.350000e-06 63.9
49 TraesCS4A01G100900 chr2D 90.909 297 23 4 3560 3852 501377937 501378233 2.910000e-106 396.0
50 TraesCS4A01G100900 chr2D 95.122 41 1 1 428 468 548741963 548742002 3.350000e-06 63.9
51 TraesCS4A01G100900 chr2D 94.595 37 2 0 428 464 73219017 73219053 1.560000e-04 58.4
52 TraesCS4A01G100900 chr2D 100.000 29 0 0 498 526 574436754 574436782 2.000000e-03 54.7
53 TraesCS4A01G100900 chr7D 90.604 298 21 5 3559 3852 325685588 325685294 4.870000e-104 388.0
54 TraesCS4A01G100900 chr7D 94.898 196 10 0 3394 3589 344416788 344416983 1.400000e-79 307.0
55 TraesCS4A01G100900 chr5D 80.907 529 67 27 3394 3904 64644912 64644400 1.750000e-103 387.0
56 TraesCS4A01G100900 chr5D 83.544 395 44 17 3394 3783 64645104 64644726 2.300000e-92 350.0
57 TraesCS4A01G100900 chr5D 94.898 196 10 0 3394 3589 64644720 64644525 1.400000e-79 307.0
58 TraesCS4A01G100900 chr5D 95.337 193 9 0 3397 3589 103650398 103650206 1.400000e-79 307.0
59 TraesCS4A01G100900 chr5D 86.411 287 12 13 1176 1447 80220268 80220542 5.080000e-74 289.0
60 TraesCS4A01G100900 chr5D 90.909 99 5 3 3851 3949 115851213 115851119 3.260000e-26 130.0
61 TraesCS4A01G100900 chr5D 97.561 41 1 0 428 468 449691393 449691353 2.000000e-08 71.3
62 TraesCS4A01G100900 chr5D 93.617 47 3 0 3905 3951 549472935 549472889 2.000000e-08 71.3
63 TraesCS4A01G100900 chr7B 93.007 143 10 0 1360 1502 612858966 612859108 4.070000e-50 209.0
64 TraesCS4A01G100900 chr7B 96.970 33 1 0 3169 3201 721688445 721688413 5.610000e-04 56.5
65 TraesCS4A01G100900 chr5B 87.500 184 13 4 1319 1502 621057289 621057116 1.890000e-48 204.0
66 TraesCS4A01G100900 chr5B 93.458 107 7 0 1176 1282 621057389 621057283 4.160000e-35 159.0
67 TraesCS4A01G100900 chr5B 97.778 45 1 0 3905 3949 430730985 430731029 1.200000e-10 78.7
68 TraesCS4A01G100900 chr5B 95.122 41 2 0 3129 3169 97516698 97516658 9.320000e-07 65.8
69 TraesCS4A01G100900 chr5B 95.122 41 2 0 428 468 655285176 655285136 9.320000e-07 65.8
70 TraesCS4A01G100900 chr5B 100.000 29 0 0 3169 3197 622495412 622495440 2.000000e-03 54.7
71 TraesCS4A01G100900 chr2B 87.500 120 10 1 3905 4019 364133461 364133342 2.520000e-27 134.0
72 TraesCS4A01G100900 chr2B 83.495 103 10 5 366 468 690602681 690602776 5.530000e-14 89.8
73 TraesCS4A01G100900 chr2B 82.692 104 9 6 366 468 690677801 690677896 2.570000e-12 84.2
74 TraesCS4A01G100900 chr2B 95.556 45 2 0 3905 3949 675214411 675214367 5.570000e-09 73.1
75 TraesCS4A01G100900 chr2B 97.561 41 1 0 428 468 45729617 45729657 2.000000e-08 71.3
76 TraesCS4A01G100900 chr2B 97.561 41 1 0 428 468 680079924 680079884 2.000000e-08 71.3
77 TraesCS4A01G100900 chr2B 95.122 41 2 0 3129 3169 723721961 723721921 9.320000e-07 65.8
78 TraesCS4A01G100900 chr6B 95.833 72 3 0 3948 4019 82883559 82883488 2.540000e-22 117.0
79 TraesCS4A01G100900 chr6B 83.721 86 9 3 383 468 87735121 87735041 4.310000e-10 76.8
80 TraesCS4A01G100900 chr6B 94.737 38 2 0 3129 3166 704964153 704964190 4.340000e-05 60.2
81 TraesCS4A01G100900 chr6B 100.000 29 0 0 3169 3197 702688109 702688137 2.000000e-03 54.7
82 TraesCS4A01G100900 chr6A 89.610 77 6 2 3850 3924 96172049 96171973 3.310000e-16 97.1
83 TraesCS4A01G100900 chr6A 89.610 77 6 2 3850 3924 217062997 217062921 3.310000e-16 97.1
84 TraesCS4A01G100900 chr6A 89.610 77 6 2 3850 3924 419012358 419012282 3.310000e-16 97.1
85 TraesCS4A01G100900 chr6A 100.000 30 0 0 3336 3365 34038764 34038735 5.610000e-04 56.5
86 TraesCS4A01G100900 chr7A 95.122 41 2 0 3129 3169 113485071 113485111 9.320000e-07 65.8
87 TraesCS4A01G100900 chr7A 95.122 41 2 0 3129 3169 205465721 205465681 9.320000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G100900 chr4A 113329130 113333148 4018 True 7422.000000 7422 100.000000 1 4019 1 chr4A.!!$R1 4018
1 TraesCS4A01G100900 chr4B 435484153 435487515 3362 True 1534.000000 4246 91.898667 1 3380 3 chr4B.!!$R2 3379
2 TraesCS4A01G100900 chr4D 352117029 352120426 3397 False 1497.666667 3886 88.369667 1 3337 3 chr4D.!!$F2 3336
3 TraesCS4A01G100900 chr3D 558784184 558786218 2034 False 1242.000000 1242 78.361000 1018 3021 1 chr3D.!!$F4 2003
4 TraesCS4A01G100900 chr3B 741601379 741603069 1690 False 1212.000000 1212 80.175000 1361 3021 1 chr3B.!!$F1 1660
5 TraesCS4A01G100900 chr3A 695130593 695132221 1628 False 1158.000000 1158 80.049000 1435 3021 1 chr3A.!!$F3 1586
6 TraesCS4A01G100900 chr1A 23816619 23817799 1180 False 787.000000 787 79.239000 1463 2640 1 chr1A.!!$F1 1177
7 TraesCS4A01G100900 chr1D 22624396 22625531 1135 True 749.000000 749 79.084000 1517 2643 1 chr1D.!!$R1 1126
8 TraesCS4A01G100900 chr1B 38832446 38833672 1226 False 717.000000 717 77.849000 1430 2647 1 chr1B.!!$F1 1217
9 TraesCS4A01G100900 chr5D 64644400 64645104 704 True 348.000000 387 86.449667 3394 3904 3 chr5D.!!$R5 510

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
707 821 0.108041 GGCAATGGCATGTTTCCTGG 60.108 55.000 0.0 0.0 43.71 4.45 F
1356 1508 0.100861 GTCTTTCCTCTACGCCTCCG 59.899 60.000 0.0 0.0 41.14 4.63 F
1415 1567 1.216710 CCTCTTCCTCGACTGCCAC 59.783 63.158 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2286 2483 0.544697 GGAAGTCAGGGCGGGAAATA 59.455 55.000 0.00 0.0 0.00 1.40 R
2332 2541 1.005037 CGTACTGGCAGCACCTGAA 60.005 57.895 15.89 0.0 39.72 3.02 R
3309 3609 1.076677 TGGTTCGGAGGGAGTAACTCT 59.923 52.381 0.00 0.0 35.34 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 5.415701 TGTAATGCACTCTTTTCTTCATCCC 59.584 40.000 0.00 0.00 0.00 3.85
70 71 7.453393 AGAGAAGTTTTTGGTGAGACATATGA 58.547 34.615 10.38 0.00 0.00 2.15
74 75 9.696917 GAAGTTTTTGGTGAGACATATGATTTT 57.303 29.630 10.38 0.00 0.00 1.82
118 125 6.236017 AGTGTTATGAAACCACGTGTTATG 57.764 37.500 15.65 0.92 35.67 1.90
123 130 8.661257 TGTTATGAAACCACGTGTTATGATAAG 58.339 33.333 15.65 0.00 35.67 1.73
174 181 5.044428 CTTGATCAAGGAGCAAACTTCAG 57.956 43.478 25.14 0.00 37.50 3.02
254 261 6.374417 TTCCTTCTAGACTATGGCAAGTTT 57.626 37.500 0.00 0.00 0.00 2.66
255 262 6.374417 TCCTTCTAGACTATGGCAAGTTTT 57.626 37.500 0.00 0.00 0.00 2.43
263 270 5.013599 AGACTATGGCAAGTTTTCTCCTCTT 59.986 40.000 0.00 0.00 0.00 2.85
268 275 3.304996 GGCAAGTTTTCTCCTCTTCAAGC 60.305 47.826 0.00 0.00 0.00 4.01
270 277 2.772287 AGTTTTCTCCTCTTCAAGCGG 58.228 47.619 0.00 0.00 0.00 5.52
287 294 5.348986 CAAGCGGTCTTGTAGATAAGCTTA 58.651 41.667 8.99 8.99 43.55 3.09
291 298 5.764131 CGGTCTTGTAGATAAGCTTAGAGG 58.236 45.833 12.54 0.00 0.00 3.69
292 299 5.299782 CGGTCTTGTAGATAAGCTTAGAGGT 59.700 44.000 12.54 0.00 0.00 3.85
293 300 6.485984 CGGTCTTGTAGATAAGCTTAGAGGTA 59.514 42.308 12.54 0.00 0.00 3.08
294 301 7.013083 CGGTCTTGTAGATAAGCTTAGAGGTAA 59.987 40.741 12.54 4.12 0.00 2.85
295 302 8.693625 GGTCTTGTAGATAAGCTTAGAGGTAAA 58.306 37.037 12.54 1.93 0.00 2.01
296 303 9.738832 GTCTTGTAGATAAGCTTAGAGGTAAAG 57.261 37.037 12.54 10.70 0.00 1.85
297 304 9.476928 TCTTGTAGATAAGCTTAGAGGTAAAGT 57.523 33.333 12.54 0.00 0.00 2.66
301 308 9.964303 GTAGATAAGCTTAGAGGTAAAGTAACC 57.036 37.037 12.54 0.00 40.06 2.85
330 347 6.600032 TGACCAAAAAGTCTAGCAAACTTGTA 59.400 34.615 0.00 0.00 37.06 2.41
366 383 4.345257 TCATGGGCTAAGGAACAGATAGAC 59.655 45.833 0.00 0.00 0.00 2.59
372 389 6.042208 GGGCTAAGGAACAGATAGACATACTT 59.958 42.308 0.00 0.00 0.00 2.24
378 395 7.588169 AGGAACAGATAGACATACTTCCTACT 58.412 38.462 0.00 0.00 34.91 2.57
379 396 8.062536 AGGAACAGATAGACATACTTCCTACTT 58.937 37.037 0.00 0.00 34.91 2.24
380 397 8.697292 GGAACAGATAGACATACTTCCTACTTT 58.303 37.037 0.00 0.00 0.00 2.66
410 427 9.787435 TTATTTACTCCGCATATTACCTTTGAT 57.213 29.630 0.00 0.00 0.00 2.57
417 434 7.506114 TCCGCATATTACCTTTGATCTAAGTT 58.494 34.615 14.52 4.39 0.00 2.66
419 436 8.926710 CCGCATATTACCTTTGATCTAAGTTAG 58.073 37.037 14.52 3.29 0.00 2.34
613 720 7.135591 TCATATCTTGTACAATGATCCACCA 57.864 36.000 18.03 6.78 0.00 4.17
619 726 6.599244 TCTTGTACAATGATCCACCAAAGATC 59.401 38.462 9.13 0.00 40.51 2.75
637 744 3.136260 AGATCAATGAGAAAGAGCCTCCC 59.864 47.826 0.00 0.00 0.00 4.30
657 771 4.225267 TCCCAAGTTTCTCTCCCTACATTC 59.775 45.833 0.00 0.00 0.00 2.67
666 780 2.497675 TCTCCCTACATTCTGTGCTCAC 59.502 50.000 0.00 0.00 0.00 3.51
693 807 9.023962 TGTTCTCTACAAATATTTGAAGGCAAT 57.976 29.630 30.18 11.77 40.55 3.56
694 808 9.294030 GTTCTCTACAAATATTTGAAGGCAATG 57.706 33.333 30.18 13.41 40.55 2.82
695 809 7.999679 TCTCTACAAATATTTGAAGGCAATGG 58.000 34.615 30.18 11.34 40.55 3.16
696 810 6.572519 TCTACAAATATTTGAAGGCAATGGC 58.427 36.000 30.18 0.00 40.55 4.40
697 811 5.163281 ACAAATATTTGAAGGCAATGGCA 57.837 34.783 30.18 0.00 40.30 4.92
698 812 5.747342 ACAAATATTTGAAGGCAATGGCAT 58.253 33.333 30.18 0.00 40.30 4.40
699 813 5.587043 ACAAATATTTGAAGGCAATGGCATG 59.413 36.000 30.18 3.48 40.30 4.06
700 814 5.362105 AATATTTGAAGGCAATGGCATGT 57.638 34.783 10.05 0.00 43.71 3.21
701 815 3.706600 ATTTGAAGGCAATGGCATGTT 57.293 38.095 10.05 0.00 43.71 2.71
702 816 3.488778 TTTGAAGGCAATGGCATGTTT 57.511 38.095 10.05 0.00 43.71 2.83
703 817 2.747396 TGAAGGCAATGGCATGTTTC 57.253 45.000 10.05 4.61 43.71 2.78
704 818 1.275856 TGAAGGCAATGGCATGTTTCC 59.724 47.619 10.05 0.00 43.71 3.13
705 819 1.551883 GAAGGCAATGGCATGTTTCCT 59.448 47.619 10.05 2.46 43.71 3.36
706 820 0.899720 AGGCAATGGCATGTTTCCTG 59.100 50.000 10.05 0.00 43.71 3.86
707 821 0.108041 GGCAATGGCATGTTTCCTGG 60.108 55.000 0.00 0.00 43.71 4.45
708 822 0.741927 GCAATGGCATGTTTCCTGGC 60.742 55.000 0.00 0.00 40.72 4.85
709 823 0.458889 CAATGGCATGTTTCCTGGCG 60.459 55.000 0.00 0.00 41.75 5.69
710 824 0.611618 AATGGCATGTTTCCTGGCGA 60.612 50.000 0.00 0.00 41.75 5.54
711 825 1.033746 ATGGCATGTTTCCTGGCGAG 61.034 55.000 0.00 0.00 41.75 5.03
754 868 2.101415 ACCTACCCTTAATAACGACGGC 59.899 50.000 0.00 0.00 0.00 5.68
756 870 2.766345 ACCCTTAATAACGACGGCAA 57.234 45.000 0.00 0.00 0.00 4.52
766 880 2.145905 CGACGGCAAAATCGCAAGC 61.146 57.895 0.00 0.00 37.18 4.01
877 993 1.068055 GTAGAAAAGACCCGACGCTGA 60.068 52.381 0.00 0.00 0.00 4.26
920 1037 4.018960 ACATGGCAGAGTAAAATCAGGAGT 60.019 41.667 0.00 0.00 0.00 3.85
981 1100 1.006220 GCGCCCAAAAACCCTCTTG 60.006 57.895 0.00 0.00 0.00 3.02
984 1103 1.744320 GCCCAAAAACCCTCTTGCGT 61.744 55.000 0.00 0.00 0.00 5.24
1356 1508 0.100861 GTCTTTCCTCTACGCCTCCG 59.899 60.000 0.00 0.00 41.14 4.63
1415 1567 1.216710 CCTCTTCCTCGACTGCCAC 59.783 63.158 0.00 0.00 0.00 5.01
2224 2421 1.676967 CTGTCCAAGGGCAAGGAGC 60.677 63.158 0.00 0.00 44.65 4.70
2239 2436 2.284625 AGCTGATCCGTGTCCCCA 60.285 61.111 0.00 0.00 0.00 4.96
2310 2507 4.016706 CGCCCTGACTTCCCGGTT 62.017 66.667 0.00 0.00 0.00 4.44
2312 2509 2.593956 GCCCTGACTTCCCGGTTCT 61.594 63.158 0.00 0.00 0.00 3.01
2574 2795 2.179517 CGGTCGAGGCAGACAGAC 59.820 66.667 13.65 3.13 42.62 3.51
2921 3154 3.357079 CCAGTTGGTGCTCCGTGC 61.357 66.667 0.00 0.00 43.25 5.34
3066 3336 1.071814 GCTGGTGGTTTCACGGGTA 59.928 57.895 0.00 0.00 44.50 3.69
3068 3338 1.884928 GCTGGTGGTTTCACGGGTATT 60.885 52.381 0.00 0.00 44.50 1.89
3131 3431 4.447544 CACAAGTGCCGGTGTGTA 57.552 55.556 13.36 0.00 40.22 2.90
3132 3432 1.938861 CACAAGTGCCGGTGTGTAC 59.061 57.895 13.36 1.64 40.22 2.90
3133 3433 0.531974 CACAAGTGCCGGTGTGTACT 60.532 55.000 13.36 3.74 40.22 2.73
3137 3437 1.080025 GTGCCGGTGTGTACTCCTC 60.080 63.158 1.90 0.00 0.00 3.71
3138 3438 2.280552 TGCCGGTGTGTACTCCTCC 61.281 63.158 1.90 0.00 0.00 4.30
3139 3439 3.015312 GCCGGTGTGTACTCCTCCC 62.015 68.421 1.90 0.00 0.00 4.30
3140 3440 2.707849 CCGGTGTGTACTCCTCCCG 61.708 68.421 0.00 9.51 35.32 5.14
3141 3441 1.975407 CGGTGTGTACTCCTCCCGT 60.975 63.158 0.00 0.00 0.00 5.28
3142 3442 1.530013 CGGTGTGTACTCCTCCCGTT 61.530 60.000 0.00 0.00 0.00 4.44
3143 3443 0.245813 GGTGTGTACTCCTCCCGTTC 59.754 60.000 0.00 0.00 0.00 3.95
3144 3444 0.245813 GTGTGTACTCCTCCCGTTCC 59.754 60.000 0.00 0.00 0.00 3.62
3145 3445 0.178955 TGTGTACTCCTCCCGTTCCA 60.179 55.000 0.00 0.00 0.00 3.53
3146 3446 0.971386 GTGTACTCCTCCCGTTCCAA 59.029 55.000 0.00 0.00 0.00 3.53
3147 3447 1.345415 GTGTACTCCTCCCGTTCCAAA 59.655 52.381 0.00 0.00 0.00 3.28
3148 3448 2.048601 TGTACTCCTCCCGTTCCAAAA 58.951 47.619 0.00 0.00 0.00 2.44
3149 3449 2.640826 TGTACTCCTCCCGTTCCAAAAT 59.359 45.455 0.00 0.00 0.00 1.82
3150 3450 3.839490 TGTACTCCTCCCGTTCCAAAATA 59.161 43.478 0.00 0.00 0.00 1.40
3151 3451 3.629142 ACTCCTCCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
3152 3452 3.178865 ACTCCTCCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
3153 3453 3.780850 ACTCCTCCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
3154 3454 4.130118 CTCCTCCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
3155 3455 3.778075 TCCTCCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
3156 3456 4.412199 TCCTCCCGTTCCAAAATAGATGAT 59.588 41.667 0.00 0.00 0.00 2.45
3157 3457 5.104109 TCCTCCCGTTCCAAAATAGATGATT 60.104 40.000 0.00 0.00 0.00 2.57
3158 3458 5.239525 CCTCCCGTTCCAAAATAGATGATTC 59.760 44.000 0.00 0.00 0.00 2.52
3159 3459 5.750524 TCCCGTTCCAAAATAGATGATTCA 58.249 37.500 0.00 0.00 0.00 2.57
3160 3460 6.184068 TCCCGTTCCAAAATAGATGATTCAA 58.816 36.000 0.00 0.00 0.00 2.69
3161 3461 6.094881 TCCCGTTCCAAAATAGATGATTCAAC 59.905 38.462 0.00 0.00 0.00 3.18
3162 3462 6.095440 CCCGTTCCAAAATAGATGATTCAACT 59.905 38.462 1.83 1.83 0.00 3.16
3163 3463 7.362920 CCCGTTCCAAAATAGATGATTCAACTT 60.363 37.037 1.47 0.00 0.00 2.66
3164 3464 8.028938 CCGTTCCAAAATAGATGATTCAACTTT 58.971 33.333 1.47 0.00 0.00 2.66
3165 3465 8.853345 CGTTCCAAAATAGATGATTCAACTTTG 58.147 33.333 1.47 1.65 0.00 2.77
3166 3466 9.696917 GTTCCAAAATAGATGATTCAACTTTGT 57.303 29.630 1.47 0.00 0.00 2.83
3184 3484 9.755064 CAACTTTGTACATCTATTTTAGAACGG 57.245 33.333 0.00 0.00 38.50 4.44
3185 3485 9.715121 AACTTTGTACATCTATTTTAGAACGGA 57.285 29.630 0.00 0.00 38.50 4.69
3186 3486 9.367444 ACTTTGTACATCTATTTTAGAACGGAG 57.633 33.333 0.00 0.00 38.50 4.63
3187 3487 8.712285 TTTGTACATCTATTTTAGAACGGAGG 57.288 34.615 0.00 0.00 38.50 4.30
3188 3488 6.812998 TGTACATCTATTTTAGAACGGAGGG 58.187 40.000 0.00 0.00 38.50 4.30
3189 3489 6.608405 TGTACATCTATTTTAGAACGGAGGGA 59.392 38.462 0.00 0.00 38.50 4.20
3190 3490 6.163135 ACATCTATTTTAGAACGGAGGGAG 57.837 41.667 0.00 0.00 38.50 4.30
3191 3491 5.661759 ACATCTATTTTAGAACGGAGGGAGT 59.338 40.000 0.00 0.00 38.50 3.85
3192 3492 6.837568 ACATCTATTTTAGAACGGAGGGAGTA 59.162 38.462 0.00 0.00 38.50 2.59
3193 3493 6.956202 TCTATTTTAGAACGGAGGGAGTAG 57.044 41.667 0.00 0.00 0.00 2.57
3194 3494 6.430007 TCTATTTTAGAACGGAGGGAGTAGT 58.570 40.000 0.00 0.00 0.00 2.73
3195 3495 6.894103 TCTATTTTAGAACGGAGGGAGTAGTT 59.106 38.462 0.00 0.00 0.00 2.24
3206 3506 3.958798 GAGGGAGTAGTTAGTATGTGGCA 59.041 47.826 0.00 0.00 0.00 4.92
3218 3518 1.050204 ATGTGGCAGGCACAAAACAT 58.950 45.000 31.51 13.77 36.06 2.71
3231 3531 4.776743 CACAAAACATCTTCAGTCCTTCG 58.223 43.478 0.00 0.00 0.00 3.79
3277 3577 7.872113 ATTTATGTGGAAAATCAGACTCTCC 57.128 36.000 0.00 0.00 0.00 3.71
3302 3602 4.458397 ACCTTGCATCTCATAACATGGAG 58.542 43.478 0.00 0.00 33.01 3.86
3306 3606 5.114764 TGCATCTCATAACATGGAGGAAA 57.885 39.130 0.00 0.00 0.00 3.13
3309 3609 6.126796 TGCATCTCATAACATGGAGGAAAGTA 60.127 38.462 0.00 0.00 0.00 2.24
3310 3610 6.426328 GCATCTCATAACATGGAGGAAAGTAG 59.574 42.308 0.00 0.00 0.00 2.57
3326 3626 4.313020 AAGTAGAGTTACTCCCTCCGAA 57.687 45.455 8.96 0.00 39.20 4.30
3337 3637 3.585732 ACTCCCTCCGAACCAAATCTAAA 59.414 43.478 0.00 0.00 0.00 1.85
3343 3643 6.183360 CCCTCCGAACCAAATCTAAATTGTAC 60.183 42.308 0.00 0.00 0.00 2.90
3387 3687 6.968131 TTGATTGAAGTGAGTACATACAGC 57.032 37.500 0.00 0.00 0.00 4.40
3388 3688 6.286240 TGATTGAAGTGAGTACATACAGCT 57.714 37.500 0.00 0.00 0.00 4.24
3389 3689 6.701340 TGATTGAAGTGAGTACATACAGCTT 58.299 36.000 0.00 0.21 0.00 3.74
3390 3690 6.813649 TGATTGAAGTGAGTACATACAGCTTC 59.186 38.462 0.00 8.62 34.36 3.86
3391 3691 5.722021 TGAAGTGAGTACATACAGCTTCA 57.278 39.130 17.20 17.20 37.71 3.02
3392 3692 5.714047 TGAAGTGAGTACATACAGCTTCAG 58.286 41.667 17.20 0.00 36.52 3.02
3422 3722 6.016108 GGCTAGTCATAGTGGGAGTAACTTAG 60.016 46.154 0.00 0.00 0.00 2.18
3452 3752 5.640732 ACATAGCGCATTTCGAGAAAATTT 58.359 33.333 11.47 0.00 41.67 1.82
3463 3763 8.702438 CATTTCGAGAAAATTTTGCTTATGTGT 58.298 29.630 8.47 0.00 35.32 3.72
3485 3785 7.103641 GTGTCAAGTAATTAATGAGAGGTGGA 58.896 38.462 3.16 0.00 0.00 4.02
3523 3823 7.673810 ACTGTAACATAACGCTTTTCAAAAC 57.326 32.000 0.00 0.00 0.00 2.43
3533 3833 5.273944 ACGCTTTTCAAAACAAGATGAGTC 58.726 37.500 0.00 0.00 0.00 3.36
3535 3835 5.397534 CGCTTTTCAAAACAAGATGAGTCTG 59.602 40.000 0.00 0.00 34.13 3.51
3598 3898 5.642063 TGTTACTTTGCATTAGACTAGCCAC 59.358 40.000 3.58 0.00 0.00 5.01
3603 3903 2.831526 TGCATTAGACTAGCCACAGTGA 59.168 45.455 0.62 0.00 0.00 3.41
3604 3904 3.260632 TGCATTAGACTAGCCACAGTGAA 59.739 43.478 0.62 0.00 0.00 3.18
3613 3913 5.681639 ACTAGCCACAGTGAAAGTAACTTT 58.318 37.500 0.62 0.00 36.29 2.66
3615 3915 7.277396 ACTAGCCACAGTGAAAGTAACTTTAA 58.723 34.615 0.62 0.00 33.49 1.52
3616 3916 6.373186 AGCCACAGTGAAAGTAACTTTAAC 57.627 37.500 0.62 0.00 35.60 2.01
3627 3927 9.531942 TGAAAGTAACTTTAACAGTAACATCGA 57.468 29.630 0.00 0.00 33.49 3.59
3629 3929 9.538508 AAAGTAACTTTAACAGTAACATCGAGT 57.461 29.630 0.00 0.00 32.94 4.18
3630 3930 9.538508 AAGTAACTTTAACAGTAACATCGAGTT 57.461 29.630 0.00 0.00 44.27 3.01
3632 3932 8.971321 GTAACTTTAACAGTAACATCGAGTTCA 58.029 33.333 3.94 0.00 41.64 3.18
3633 3933 8.428186 AACTTTAACAGTAACATCGAGTTCAA 57.572 30.769 3.94 0.00 41.64 2.69
3635 3935 7.709613 ACTTTAACAGTAACATCGAGTTCAACT 59.290 33.333 0.00 0.00 41.64 3.16
3636 3936 7.633361 TTAACAGTAACATCGAGTTCAACTC 57.367 36.000 7.56 7.56 41.64 3.01
3637 3937 5.196341 ACAGTAACATCGAGTTCAACTCA 57.804 39.130 17.81 5.36 45.30 3.41
3638 3938 5.223382 ACAGTAACATCGAGTTCAACTCAG 58.777 41.667 17.81 10.18 45.30 3.35
3639 3939 4.090642 CAGTAACATCGAGTTCAACTCAGC 59.909 45.833 17.81 0.00 45.30 4.26
3642 3942 3.466836 ACATCGAGTTCAACTCAGCAAA 58.533 40.909 17.81 0.00 45.30 3.68
3644 3944 4.516698 ACATCGAGTTCAACTCAGCAAATT 59.483 37.500 17.81 0.00 45.30 1.82
3662 3962 6.102006 CAAATTTGCTTATGTGGCAATGAG 57.898 37.500 5.01 0.00 46.81 2.90
3668 3968 5.893687 TGCTTATGTGGCAATGAGTTAATG 58.106 37.500 0.00 0.00 36.71 1.90
3671 3971 6.698008 TTATGTGGCAATGAGTTAATGAGG 57.302 37.500 0.00 0.00 0.00 3.86
3672 3972 4.299586 TGTGGCAATGAGTTAATGAGGA 57.700 40.909 0.00 0.00 0.00 3.71
3674 3974 4.019411 TGTGGCAATGAGTTAATGAGGAGA 60.019 41.667 0.00 0.00 0.00 3.71
3676 3976 4.471025 TGGCAATGAGTTAATGAGGAGAGA 59.529 41.667 0.00 0.00 0.00 3.10
3677 3977 5.055812 GGCAATGAGTTAATGAGGAGAGAG 58.944 45.833 0.00 0.00 0.00 3.20
3678 3978 5.055812 GCAATGAGTTAATGAGGAGAGAGG 58.944 45.833 0.00 0.00 0.00 3.69
3683 4094 7.209340 TGAGTTAATGAGGAGAGAGGTAGTA 57.791 40.000 0.00 0.00 0.00 1.82
3685 4096 7.092354 TGAGTTAATGAGGAGAGAGGTAGTAGT 60.092 40.741 0.00 0.00 0.00 2.73
3695 4106 8.927411 AGGAGAGAGGTAGTAGTAGTAACTTAG 58.073 40.741 4.04 0.00 37.15 2.18
3715 4196 8.118976 ACTTAGCTAGTTACTGTAACATCACA 57.881 34.615 27.12 10.61 41.07 3.58
3716 4197 8.750298 ACTTAGCTAGTTACTGTAACATCACAT 58.250 33.333 27.12 11.85 41.07 3.21
3717 4198 8.926715 TTAGCTAGTTACTGTAACATCACATG 57.073 34.615 27.12 12.57 41.07 3.21
3719 4200 7.036220 AGCTAGTTACTGTAACATCACATGTC 58.964 38.462 27.12 9.51 44.07 3.06
3724 4205 4.922206 ACTGTAACATCACATGTCCCAAT 58.078 39.130 0.00 0.00 44.07 3.16
3725 4206 4.701651 ACTGTAACATCACATGTCCCAATG 59.298 41.667 0.00 0.45 44.07 2.82
3726 4207 4.015764 TGTAACATCACATGTCCCAATGG 58.984 43.478 0.00 0.00 44.07 3.16
3729 4210 3.985127 ACATCACATGTCCCAATGGAAT 58.015 40.909 0.00 0.00 44.07 3.01
3739 4220 7.017950 ACATGTCCCAATGGAATATGAGTCTAT 59.982 37.037 1.75 0.00 44.07 1.98
3740 4221 8.542926 CATGTCCCAATGGAATATGAGTCTATA 58.457 37.037 0.00 0.00 44.07 1.31
3742 4223 8.375506 TGTCCCAATGGAATATGAGTCTATAAC 58.624 37.037 0.00 0.00 44.07 1.89
3765 4246 8.469309 AACCTAATAAATGAAGCTATGCATGT 57.531 30.769 10.16 0.00 0.00 3.21
3767 4248 9.573166 ACCTAATAAATGAAGCTATGCATGTTA 57.427 29.630 10.16 0.00 0.00 2.41
3769 4250 9.831737 CTAATAAATGAAGCTATGCATGTTACC 57.168 33.333 10.16 0.00 0.00 2.85
3772 4253 3.949132 TGAAGCTATGCATGTTACCACA 58.051 40.909 10.16 0.00 37.31 4.17
3773 4254 3.689161 TGAAGCTATGCATGTTACCACAC 59.311 43.478 10.16 0.00 35.03 3.82
3783 4264 5.413213 TGCATGTTACCACACTTATGTTACC 59.587 40.000 0.00 0.00 36.72 2.85
3784 4265 5.413213 GCATGTTACCACACTTATGTTACCA 59.587 40.000 0.00 0.00 36.72 3.25
3785 4266 6.622028 GCATGTTACCACACTTATGTTACCAC 60.622 42.308 0.00 0.00 36.72 4.16
3786 4267 5.307204 TGTTACCACACTTATGTTACCACC 58.693 41.667 0.00 0.00 36.72 4.61
3789 4270 3.078837 CCACACTTATGTTACCACCCAC 58.921 50.000 0.00 0.00 36.72 4.61
3790 4271 3.244770 CCACACTTATGTTACCACCCACT 60.245 47.826 0.00 0.00 36.72 4.00
3791 4272 4.020039 CCACACTTATGTTACCACCCACTA 60.020 45.833 0.00 0.00 36.72 2.74
3792 4273 5.338871 CCACACTTATGTTACCACCCACTAT 60.339 44.000 0.00 0.00 36.72 2.12
3793 4274 5.584649 CACACTTATGTTACCACCCACTATG 59.415 44.000 0.00 0.00 36.72 2.23
3794 4275 5.486063 ACACTTATGTTACCACCCACTATGA 59.514 40.000 0.00 0.00 34.46 2.15
3795 4276 6.013206 ACACTTATGTTACCACCCACTATGAA 60.013 38.462 0.00 0.00 34.46 2.57
3796 4277 6.538742 CACTTATGTTACCACCCACTATGAAG 59.461 42.308 0.00 0.00 0.00 3.02
3797 4278 3.992943 TGTTACCACCCACTATGAAGG 57.007 47.619 0.00 0.00 0.00 3.46
3798 4279 3.253220 TGTTACCACCCACTATGAAGGT 58.747 45.455 0.00 0.00 0.00 3.50
3799 4280 4.427637 TGTTACCACCCACTATGAAGGTA 58.572 43.478 0.00 0.00 30.98 3.08
3800 4281 4.468510 TGTTACCACCCACTATGAAGGTAG 59.531 45.833 0.00 0.00 33.59 3.18
3801 4282 3.200958 ACCACCCACTATGAAGGTAGT 57.799 47.619 0.00 0.00 35.34 2.73
3802 4283 4.341863 ACCACCCACTATGAAGGTAGTA 57.658 45.455 0.00 0.00 33.29 1.82
3803 4284 4.691238 ACCACCCACTATGAAGGTAGTAA 58.309 43.478 0.00 0.00 33.29 2.24
3804 4285 4.468868 ACCACCCACTATGAAGGTAGTAAC 59.531 45.833 0.00 0.00 33.29 2.50
3805 4286 4.468510 CCACCCACTATGAAGGTAGTAACA 59.531 45.833 0.00 0.00 33.29 2.41
3806 4287 5.130477 CCACCCACTATGAAGGTAGTAACAT 59.870 44.000 0.00 0.00 33.29 2.71
3807 4288 6.049149 CACCCACTATGAAGGTAGTAACATG 58.951 44.000 0.00 0.00 33.29 3.21
3808 4289 5.130477 ACCCACTATGAAGGTAGTAACATGG 59.870 44.000 0.00 0.00 33.29 3.66
3809 4290 5.130477 CCCACTATGAAGGTAGTAACATGGT 59.870 44.000 0.00 0.00 35.50 3.55
3810 4291 6.281405 CCACTATGAAGGTAGTAACATGGTC 58.719 44.000 0.00 0.00 33.54 4.02
3811 4292 6.098409 CCACTATGAAGGTAGTAACATGGTCT 59.902 42.308 0.00 0.00 33.54 3.85
3812 4293 7.287005 CCACTATGAAGGTAGTAACATGGTCTA 59.713 40.741 0.00 0.00 33.54 2.59
3813 4294 8.353684 CACTATGAAGGTAGTAACATGGTCTAG 58.646 40.741 0.00 0.00 33.54 2.43
3814 4295 6.732896 ATGAAGGTAGTAACATGGTCTAGG 57.267 41.667 0.00 0.00 0.00 3.02
3815 4296 5.834460 TGAAGGTAGTAACATGGTCTAGGA 58.166 41.667 0.00 0.00 0.00 2.94
3816 4297 6.258354 TGAAGGTAGTAACATGGTCTAGGAA 58.742 40.000 0.00 0.00 0.00 3.36
3817 4298 6.901300 TGAAGGTAGTAACATGGTCTAGGAAT 59.099 38.462 0.00 0.00 0.00 3.01
3818 4299 8.063153 TGAAGGTAGTAACATGGTCTAGGAATA 58.937 37.037 0.00 0.00 0.00 1.75
3819 4300 7.836479 AGGTAGTAACATGGTCTAGGAATAC 57.164 40.000 0.00 0.00 0.00 1.89
3820 4301 6.489361 AGGTAGTAACATGGTCTAGGAATACG 59.511 42.308 0.00 0.00 0.00 3.06
3821 4302 6.264067 GGTAGTAACATGGTCTAGGAATACGT 59.736 42.308 0.00 0.00 0.00 3.57
3822 4303 6.145338 AGTAACATGGTCTAGGAATACGTG 57.855 41.667 0.00 0.00 0.00 4.49
3823 4304 5.655532 AGTAACATGGTCTAGGAATACGTGT 59.344 40.000 0.00 0.00 0.00 4.49
3824 4305 6.830324 AGTAACATGGTCTAGGAATACGTGTA 59.170 38.462 0.00 0.00 0.00 2.90
3825 4306 6.726490 AACATGGTCTAGGAATACGTGTAT 57.274 37.500 0.00 0.00 0.00 2.29
3826 4307 6.085555 ACATGGTCTAGGAATACGTGTATG 57.914 41.667 0.00 0.00 0.00 2.39
3827 4308 5.597182 ACATGGTCTAGGAATACGTGTATGT 59.403 40.000 0.00 0.00 0.00 2.29
3828 4309 6.097839 ACATGGTCTAGGAATACGTGTATGTT 59.902 38.462 0.00 0.00 0.00 2.71
3829 4310 7.286087 ACATGGTCTAGGAATACGTGTATGTTA 59.714 37.037 0.00 0.00 0.00 2.41
3830 4311 7.031226 TGGTCTAGGAATACGTGTATGTTAC 57.969 40.000 0.00 0.00 0.00 2.50
3831 4312 6.830324 TGGTCTAGGAATACGTGTATGTTACT 59.170 38.462 0.00 0.00 0.00 2.24
3832 4313 7.012704 TGGTCTAGGAATACGTGTATGTTACTC 59.987 40.741 0.00 0.00 0.00 2.59
3833 4314 7.228308 GGTCTAGGAATACGTGTATGTTACTCT 59.772 40.741 0.00 0.00 0.00 3.24
3834 4315 8.619546 GTCTAGGAATACGTGTATGTTACTCTT 58.380 37.037 0.00 0.00 0.00 2.85
3835 4316 8.834465 TCTAGGAATACGTGTATGTTACTCTTC 58.166 37.037 0.00 0.00 0.00 2.87
3836 4317 7.400599 AGGAATACGTGTATGTTACTCTTCA 57.599 36.000 0.00 0.00 0.00 3.02
3837 4318 8.008513 AGGAATACGTGTATGTTACTCTTCAT 57.991 34.615 0.00 0.00 0.00 2.57
3838 4319 8.475639 AGGAATACGTGTATGTTACTCTTCATT 58.524 33.333 0.00 0.00 0.00 2.57
3839 4320 8.540492 GGAATACGTGTATGTTACTCTTCATTG 58.460 37.037 0.00 0.00 0.00 2.82
3840 4321 8.997621 AATACGTGTATGTTACTCTTCATTGT 57.002 30.769 0.00 0.00 0.00 2.71
3841 4322 6.706055 ACGTGTATGTTACTCTTCATTGTG 57.294 37.500 0.00 0.00 0.00 3.33
3842 4323 5.637810 ACGTGTATGTTACTCTTCATTGTGG 59.362 40.000 0.00 0.00 0.00 4.17
3843 4324 5.445939 CGTGTATGTTACTCTTCATTGTGGC 60.446 44.000 0.00 0.00 0.00 5.01
3844 4325 5.643777 GTGTATGTTACTCTTCATTGTGGCT 59.356 40.000 0.00 0.00 0.00 4.75
3845 4326 6.816640 GTGTATGTTACTCTTCATTGTGGCTA 59.183 38.462 0.00 0.00 0.00 3.93
3846 4327 7.010552 GTGTATGTTACTCTTCATTGTGGCTAG 59.989 40.741 0.00 0.00 0.00 3.42
3847 4328 5.483685 TGTTACTCTTCATTGTGGCTAGT 57.516 39.130 0.00 0.00 0.00 2.57
3848 4329 5.479306 TGTTACTCTTCATTGTGGCTAGTC 58.521 41.667 0.00 0.00 0.00 2.59
3860 4341 5.854010 TGTGGCTAGTCTTATGAAGGTAG 57.146 43.478 0.00 0.00 0.00 3.18
3863 4344 6.893554 TGTGGCTAGTCTTATGAAGGTAGTAA 59.106 38.462 0.00 0.00 0.00 2.24
3886 4367 9.186323 GTAACTTAGACTAGTGTCATATGCATG 57.814 37.037 10.16 0.00 45.20 4.06
3887 4368 7.588497 ACTTAGACTAGTGTCATATGCATGA 57.412 36.000 10.16 0.00 45.20 3.07
3900 4381 7.588497 TCATATGCATGACACTAGTCTAAGT 57.412 36.000 10.16 0.00 45.20 2.24
3901 4382 8.011844 TCATATGCATGACACTAGTCTAAGTT 57.988 34.615 10.16 0.00 45.20 2.66
3902 4383 9.131791 TCATATGCATGACACTAGTCTAAGTTA 57.868 33.333 10.16 0.00 45.20 2.24
3903 4384 9.186323 CATATGCATGACACTAGTCTAAGTTAC 57.814 37.037 10.16 0.00 45.20 2.50
3904 4385 6.584185 TGCATGACACTAGTCTAAGTTACA 57.416 37.500 0.00 0.00 45.20 2.41
3905 4386 7.170393 TGCATGACACTAGTCTAAGTTACAT 57.830 36.000 0.00 0.00 45.20 2.29
3906 4387 7.035612 TGCATGACACTAGTCTAAGTTACATG 58.964 38.462 0.00 0.00 45.20 3.21
3907 4388 6.019479 GCATGACACTAGTCTAAGTTACATGC 60.019 42.308 19.45 19.45 46.50 4.06
3908 4389 6.584185 TGACACTAGTCTAAGTTACATGCA 57.416 37.500 0.00 0.00 45.20 3.96
3909 4390 7.170393 TGACACTAGTCTAAGTTACATGCAT 57.830 36.000 0.00 0.00 45.20 3.96
3910 4391 7.035612 TGACACTAGTCTAAGTTACATGCATG 58.964 38.462 25.09 25.09 45.20 4.06
3918 4399 7.036220 GTCTAAGTTACATGCATGACACTAGT 58.964 38.462 32.75 19.00 0.00 2.57
3929 4410 7.228314 TGCATGACACTAGTCTAAGTTACTT 57.772 36.000 2.32 2.32 45.20 2.24
3930 4411 7.667557 TGCATGACACTAGTCTAAGTTACTTT 58.332 34.615 1.94 0.00 45.20 2.66
3949 4430 4.080863 ACTTTCCACTATGACCAGCCTTAG 60.081 45.833 0.00 0.00 0.00 2.18
3950 4431 1.762957 TCCACTATGACCAGCCTTAGC 59.237 52.381 0.00 0.00 40.32 3.09
3951 4432 1.202698 CCACTATGACCAGCCTTAGCC 60.203 57.143 0.00 0.00 41.25 3.93
3953 4434 1.486726 ACTATGACCAGCCTTAGCCAC 59.513 52.381 0.00 0.00 41.25 5.01
3954 4435 1.486310 CTATGACCAGCCTTAGCCACA 59.514 52.381 0.00 0.00 41.25 4.17
3955 4436 0.254178 ATGACCAGCCTTAGCCACAG 59.746 55.000 0.00 0.00 41.25 3.66
3956 4437 1.127567 TGACCAGCCTTAGCCACAGT 61.128 55.000 0.00 0.00 41.25 3.55
3957 4438 0.674895 GACCAGCCTTAGCCACAGTG 60.675 60.000 0.00 0.00 41.25 3.66
3958 4439 1.127567 ACCAGCCTTAGCCACAGTGA 61.128 55.000 0.62 0.00 41.25 3.41
3960 4441 1.446907 CAGCCTTAGCCACAGTGAAG 58.553 55.000 0.62 0.00 41.25 3.02
3961 4442 1.002430 CAGCCTTAGCCACAGTGAAGA 59.998 52.381 0.62 0.00 41.25 2.87
3962 4443 1.277557 AGCCTTAGCCACAGTGAAGAG 59.722 52.381 0.62 0.00 41.25 2.85
3963 4444 1.002544 GCCTTAGCCACAGTGAAGAGT 59.997 52.381 0.62 0.00 0.00 3.24
3964 4445 2.233922 GCCTTAGCCACAGTGAAGAGTA 59.766 50.000 0.62 0.00 0.00 2.59
3965 4446 3.306780 GCCTTAGCCACAGTGAAGAGTAA 60.307 47.826 0.62 0.00 0.00 2.24
3966 4447 4.246458 CCTTAGCCACAGTGAAGAGTAAC 58.754 47.826 0.62 0.00 0.00 2.50
3967 4448 4.262463 CCTTAGCCACAGTGAAGAGTAACA 60.262 45.833 0.62 0.00 0.00 2.41
3970 4451 4.822026 AGCCACAGTGAAGAGTAACATAC 58.178 43.478 0.62 0.00 0.00 2.39
3977 4458 8.727910 CACAGTGAAGAGTAACATACACTAGTA 58.272 37.037 0.00 0.00 36.94 1.82
3978 4459 9.293404 ACAGTGAAGAGTAACATACACTAGTAA 57.707 33.333 0.00 0.00 36.94 2.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
5 6 4.313020 AGGGATGAAGAAAAGAGTGCAT 57.687 40.909 0.00 0.00 0.00 3.96
57 58 4.096382 ACCGCAAAAATCATATGTCTCACC 59.904 41.667 1.90 0.00 0.00 4.02
92 93 3.181458 ACACGTGGTTTCATAACACTCCT 60.181 43.478 21.57 0.00 35.92 3.69
93 94 3.135994 ACACGTGGTTTCATAACACTCC 58.864 45.455 21.57 0.00 35.92 3.85
164 171 6.319141 AGTTTCCTTACATCTGAAGTTTGC 57.681 37.500 0.00 0.00 0.00 3.68
254 261 1.633774 AGACCGCTTGAAGAGGAGAA 58.366 50.000 21.89 0.00 37.36 2.87
255 262 1.633774 AAGACCGCTTGAAGAGGAGA 58.366 50.000 21.89 0.00 37.36 3.71
268 275 5.299782 ACCTCTAAGCTTATCTACAAGACCG 59.700 44.000 6.64 0.00 0.00 4.79
270 277 9.738832 CTTTACCTCTAAGCTTATCTACAAGAC 57.261 37.037 6.64 0.00 0.00 3.01
291 298 5.989551 TTTTGGTCACGAGGTTACTTTAC 57.010 39.130 0.00 0.00 0.00 2.01
292 299 6.114767 ACTTTTTGGTCACGAGGTTACTTTA 58.885 36.000 0.00 0.00 0.00 1.85
293 300 4.945543 ACTTTTTGGTCACGAGGTTACTTT 59.054 37.500 0.00 0.00 0.00 2.66
294 301 4.520179 ACTTTTTGGTCACGAGGTTACTT 58.480 39.130 0.00 0.00 0.00 2.24
295 302 4.124970 GACTTTTTGGTCACGAGGTTACT 58.875 43.478 0.00 0.00 36.35 2.24
296 303 4.124970 AGACTTTTTGGTCACGAGGTTAC 58.875 43.478 0.00 0.00 38.57 2.50
297 304 4.411256 AGACTTTTTGGTCACGAGGTTA 57.589 40.909 0.00 0.00 38.57 2.85
298 305 3.277142 AGACTTTTTGGTCACGAGGTT 57.723 42.857 0.00 0.00 38.57 3.50
299 306 3.802675 GCTAGACTTTTTGGTCACGAGGT 60.803 47.826 0.00 0.00 38.57 3.85
300 307 2.737252 GCTAGACTTTTTGGTCACGAGG 59.263 50.000 0.00 0.00 38.57 4.63
301 308 3.390135 TGCTAGACTTTTTGGTCACGAG 58.610 45.455 0.00 0.00 38.57 4.18
302 309 3.462483 TGCTAGACTTTTTGGTCACGA 57.538 42.857 0.00 0.00 38.57 4.35
303 310 4.035208 AGTTTGCTAGACTTTTTGGTCACG 59.965 41.667 0.00 0.00 38.57 4.35
304 311 5.500645 AGTTTGCTAGACTTTTTGGTCAC 57.499 39.130 0.00 0.00 38.57 3.67
305 312 5.417580 ACAAGTTTGCTAGACTTTTTGGTCA 59.582 36.000 0.00 0.00 38.57 4.02
330 347 3.973425 AGCCCATGAGCAATCTTACTTT 58.027 40.909 0.76 0.00 34.23 2.66
334 351 3.716353 TCCTTAGCCCATGAGCAATCTTA 59.284 43.478 0.76 0.00 34.23 2.10
344 361 4.101585 TGTCTATCTGTTCCTTAGCCCATG 59.898 45.833 0.00 0.00 0.00 3.66
586 693 8.562892 GGTGGATCATTGTACAAGATATGAAAG 58.437 37.037 14.65 0.00 31.44 2.62
613 720 5.192176 GGAGGCTCTTTCTCATTGATCTTT 58.808 41.667 15.23 0.00 33.18 2.52
619 726 2.795231 TGGGAGGCTCTTTCTCATTG 57.205 50.000 15.23 0.00 33.18 2.82
657 771 3.650070 TGTAGAGAACAGTGAGCACAG 57.350 47.619 0.00 0.00 33.01 3.66
666 780 8.044060 TGCCTTCAAATATTTGTAGAGAACAG 57.956 34.615 27.19 15.12 39.87 3.16
693 807 1.675310 CTCGCCAGGAAACATGCCA 60.675 57.895 0.00 0.00 0.00 4.92
694 808 3.056313 GCTCGCCAGGAAACATGCC 62.056 63.158 0.00 0.00 0.00 4.40
695 809 2.334946 TGCTCGCCAGGAAACATGC 61.335 57.895 0.00 0.00 0.00 4.06
696 810 1.503542 GTGCTCGCCAGGAAACATG 59.496 57.895 0.00 0.00 0.00 3.21
697 811 1.675641 GGTGCTCGCCAGGAAACAT 60.676 57.895 0.00 0.00 0.00 2.71
698 812 2.281484 GGTGCTCGCCAGGAAACA 60.281 61.111 0.00 0.00 0.00 2.83
699 813 3.056328 GGGTGCTCGCCAGGAAAC 61.056 66.667 1.60 0.00 0.00 2.78
700 814 1.485294 TAAGGGTGCTCGCCAGGAAA 61.485 55.000 1.60 0.00 0.00 3.13
701 815 1.485294 TTAAGGGTGCTCGCCAGGAA 61.485 55.000 1.60 0.00 0.00 3.36
702 816 1.271840 ATTAAGGGTGCTCGCCAGGA 61.272 55.000 1.60 0.00 0.00 3.86
703 817 0.394352 AATTAAGGGTGCTCGCCAGG 60.394 55.000 1.60 0.00 0.00 4.45
704 818 1.017387 GAATTAAGGGTGCTCGCCAG 58.983 55.000 1.60 0.00 0.00 4.85
705 819 0.618458 AGAATTAAGGGTGCTCGCCA 59.382 50.000 1.60 0.00 0.00 5.69
706 820 1.300481 GAGAATTAAGGGTGCTCGCC 58.700 55.000 0.00 0.00 0.00 5.54
707 821 0.931005 CGAGAATTAAGGGTGCTCGC 59.069 55.000 0.00 0.00 41.35 5.03
709 823 0.931005 CGCGAGAATTAAGGGTGCTC 59.069 55.000 0.00 0.00 0.00 4.26
710 824 0.249398 ACGCGAGAATTAAGGGTGCT 59.751 50.000 15.93 0.00 0.00 4.40
711 825 0.651031 GACGCGAGAATTAAGGGTGC 59.349 55.000 15.93 0.00 0.00 5.01
754 868 3.451250 GCACGGCTTGCGATTTTG 58.549 55.556 0.00 0.00 42.79 2.44
1020 1139 4.733725 TTGGGGACGAGGAGGGGG 62.734 72.222 0.00 0.00 0.00 5.40
1155 1286 3.775654 CAGAGGTCGGGGGTGAGC 61.776 72.222 0.00 0.00 36.63 4.26
2239 2436 4.872691 GTCTCGATCCACATTGTTGAAGAT 59.127 41.667 0.00 0.00 0.00 2.40
2286 2483 0.544697 GGAAGTCAGGGCGGGAAATA 59.455 55.000 0.00 0.00 0.00 1.40
2332 2541 1.005037 CGTACTGGCAGCACCTGAA 60.005 57.895 15.89 0.00 39.72 3.02
3066 3336 5.843969 AGAAAATTCCCCACCAACTACAAAT 59.156 36.000 0.00 0.00 0.00 2.32
3068 3338 4.810345 AGAAAATTCCCCACCAACTACAA 58.190 39.130 0.00 0.00 0.00 2.41
3123 3423 1.530013 AACGGGAGGAGTACACACCG 61.530 60.000 15.03 15.03 46.16 4.94
3129 3429 2.845363 TTTTGGAACGGGAGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
3130 3430 4.355549 TCTATTTTGGAACGGGAGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
3131 3431 3.178865 TCTATTTTGGAACGGGAGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
3132 3432 3.906720 TCTATTTTGGAACGGGAGGAG 57.093 47.619 0.00 0.00 0.00 3.69
3133 3433 3.778075 TCATCTATTTTGGAACGGGAGGA 59.222 43.478 0.00 0.00 0.00 3.71
3137 3437 6.095440 AGTTGAATCATCTATTTTGGAACGGG 59.905 38.462 0.00 0.00 0.00 5.28
3138 3438 7.088589 AGTTGAATCATCTATTTTGGAACGG 57.911 36.000 0.00 0.00 0.00 4.44
3139 3439 8.853345 CAAAGTTGAATCATCTATTTTGGAACG 58.147 33.333 0.00 0.00 35.74 3.95
3140 3440 9.696917 ACAAAGTTGAATCATCTATTTTGGAAC 57.303 29.630 10.86 0.00 40.04 3.62
3158 3458 9.755064 CCGTTCTAAAATAGATGTACAAAGTTG 57.245 33.333 0.00 0.00 34.22 3.16
3159 3459 9.715121 TCCGTTCTAAAATAGATGTACAAAGTT 57.285 29.630 0.00 0.00 34.22 2.66
3160 3460 9.367444 CTCCGTTCTAAAATAGATGTACAAAGT 57.633 33.333 0.00 0.00 34.22 2.66
3161 3461 8.818057 CCTCCGTTCTAAAATAGATGTACAAAG 58.182 37.037 0.00 0.00 34.22 2.77
3162 3462 7.767198 CCCTCCGTTCTAAAATAGATGTACAAA 59.233 37.037 0.00 0.00 34.22 2.83
3163 3463 7.124599 TCCCTCCGTTCTAAAATAGATGTACAA 59.875 37.037 0.00 0.00 34.22 2.41
3164 3464 6.608405 TCCCTCCGTTCTAAAATAGATGTACA 59.392 38.462 0.00 0.00 34.22 2.90
3165 3465 7.047460 TCCCTCCGTTCTAAAATAGATGTAC 57.953 40.000 0.00 0.00 34.22 2.90
3166 3466 6.837568 ACTCCCTCCGTTCTAAAATAGATGTA 59.162 38.462 0.00 0.00 34.22 2.29
3167 3467 5.661759 ACTCCCTCCGTTCTAAAATAGATGT 59.338 40.000 0.00 0.00 34.22 3.06
3168 3468 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
3169 3469 7.068061 ACTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
3170 3470 6.430007 ACTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
3171 3471 6.712179 ACTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
3172 3472 7.836183 ACTAACTACTCCCTCCGTTCTAAAATA 59.164 37.037 0.00 0.00 0.00 1.40
3173 3473 6.666980 ACTAACTACTCCCTCCGTTCTAAAAT 59.333 38.462 0.00 0.00 0.00 1.82
3174 3474 6.012745 ACTAACTACTCCCTCCGTTCTAAAA 58.987 40.000 0.00 0.00 0.00 1.52
3175 3475 5.574188 ACTAACTACTCCCTCCGTTCTAAA 58.426 41.667 0.00 0.00 0.00 1.85
3176 3476 5.184892 ACTAACTACTCCCTCCGTTCTAA 57.815 43.478 0.00 0.00 0.00 2.10
3177 3477 4.851639 ACTAACTACTCCCTCCGTTCTA 57.148 45.455 0.00 0.00 0.00 2.10
3178 3478 3.735720 ACTAACTACTCCCTCCGTTCT 57.264 47.619 0.00 0.00 0.00 3.01
3179 3479 4.886489 ACATACTAACTACTCCCTCCGTTC 59.114 45.833 0.00 0.00 0.00 3.95
3180 3480 4.643784 CACATACTAACTACTCCCTCCGTT 59.356 45.833 0.00 0.00 0.00 4.44
3181 3481 4.205587 CACATACTAACTACTCCCTCCGT 58.794 47.826 0.00 0.00 0.00 4.69
3182 3482 3.568853 CCACATACTAACTACTCCCTCCG 59.431 52.174 0.00 0.00 0.00 4.63
3183 3483 3.321396 GCCACATACTAACTACTCCCTCC 59.679 52.174 0.00 0.00 0.00 4.30
3184 3484 3.958798 TGCCACATACTAACTACTCCCTC 59.041 47.826 0.00 0.00 0.00 4.30
3185 3485 3.961408 CTGCCACATACTAACTACTCCCT 59.039 47.826 0.00 0.00 0.00 4.20
3186 3486 3.069729 CCTGCCACATACTAACTACTCCC 59.930 52.174 0.00 0.00 0.00 4.30
3187 3487 3.492829 GCCTGCCACATACTAACTACTCC 60.493 52.174 0.00 0.00 0.00 3.85
3188 3488 3.132289 TGCCTGCCACATACTAACTACTC 59.868 47.826 0.00 0.00 0.00 2.59
3189 3489 3.104512 TGCCTGCCACATACTAACTACT 58.895 45.455 0.00 0.00 0.00 2.57
3190 3490 3.195661 GTGCCTGCCACATACTAACTAC 58.804 50.000 0.00 0.00 44.06 2.73
3191 3491 3.536956 GTGCCTGCCACATACTAACTA 57.463 47.619 0.00 0.00 44.06 2.24
3192 3492 2.403252 GTGCCTGCCACATACTAACT 57.597 50.000 0.00 0.00 44.06 2.24
3206 3506 2.887152 GGACTGAAGATGTTTTGTGCCT 59.113 45.455 0.00 0.00 0.00 4.75
3218 3518 4.341487 TCCTGAATACGAAGGACTGAAGA 58.659 43.478 0.00 0.00 37.68 2.87
3277 3577 4.260907 CCATGTTATGAGATGCAAGGTTCG 60.261 45.833 0.00 0.00 0.00 3.95
3302 3602 3.380954 CGGAGGGAGTAACTCTACTTTCC 59.619 52.174 0.00 2.59 38.55 3.13
3306 3606 3.619419 GTTCGGAGGGAGTAACTCTACT 58.381 50.000 0.00 0.00 41.28 2.57
3309 3609 1.076677 TGGTTCGGAGGGAGTAACTCT 59.923 52.381 0.00 0.00 35.34 3.24
3310 3610 1.553706 TGGTTCGGAGGGAGTAACTC 58.446 55.000 0.00 0.00 0.00 3.01
3363 3663 7.161404 AGCTGTATGTACTCACTTCAATCAAA 58.839 34.615 0.00 0.00 0.00 2.69
3365 3665 6.286240 AGCTGTATGTACTCACTTCAATCA 57.714 37.500 0.00 0.00 0.00 2.57
3366 3666 6.813649 TGAAGCTGTATGTACTCACTTCAATC 59.186 38.462 14.68 0.00 37.26 2.67
3380 3680 6.095432 ACTAGCCTAATCTGAAGCTGTATG 57.905 41.667 0.00 0.00 36.79 2.39
3381 3681 5.835819 TGACTAGCCTAATCTGAAGCTGTAT 59.164 40.000 0.00 0.00 36.79 2.29
3382 3682 5.201243 TGACTAGCCTAATCTGAAGCTGTA 58.799 41.667 0.00 0.00 36.79 2.74
3383 3683 4.026744 TGACTAGCCTAATCTGAAGCTGT 58.973 43.478 0.00 0.00 36.79 4.40
3384 3684 4.662468 TGACTAGCCTAATCTGAAGCTG 57.338 45.455 0.00 0.00 36.79 4.24
3385 3685 6.015519 CACTATGACTAGCCTAATCTGAAGCT 60.016 42.308 0.00 0.00 39.37 3.74
3386 3686 6.155827 CACTATGACTAGCCTAATCTGAAGC 58.844 44.000 0.00 0.00 0.00 3.86
3387 3687 6.295011 CCCACTATGACTAGCCTAATCTGAAG 60.295 46.154 0.00 0.00 0.00 3.02
3388 3688 5.540337 CCCACTATGACTAGCCTAATCTGAA 59.460 44.000 0.00 0.00 0.00 3.02
3389 3689 5.080337 CCCACTATGACTAGCCTAATCTGA 58.920 45.833 0.00 0.00 0.00 3.27
3390 3690 5.080337 TCCCACTATGACTAGCCTAATCTG 58.920 45.833 0.00 0.00 0.00 2.90
3391 3691 5.162925 ACTCCCACTATGACTAGCCTAATCT 60.163 44.000 0.00 0.00 0.00 2.40
3392 3692 5.081032 ACTCCCACTATGACTAGCCTAATC 58.919 45.833 0.00 0.00 0.00 1.75
3422 3722 3.734231 TCGAAATGCGCTATGTTACTAGC 59.266 43.478 9.73 4.52 40.61 3.42
3439 3739 7.918033 TGACACATAAGCAAAATTTTCTCGAAA 59.082 29.630 0.00 0.00 0.00 3.46
3463 3763 8.160765 TGTTTCCACCTCTCATTAATTACTTGA 58.839 33.333 0.00 0.00 0.00 3.02
3510 3810 5.066505 AGACTCATCTTGTTTTGAAAAGCGT 59.933 36.000 0.00 0.00 0.00 5.07
3517 3817 3.727726 TCGCAGACTCATCTTGTTTTGA 58.272 40.909 0.00 0.00 30.42 2.69
3523 3823 2.859526 TAGCTCGCAGACTCATCTTG 57.140 50.000 0.00 0.00 30.42 3.02
3533 3833 3.561310 TGGCTTCATTTATTAGCTCGCAG 59.439 43.478 0.00 0.00 35.30 5.18
3535 3835 4.453819 AGATGGCTTCATTTATTAGCTCGC 59.546 41.667 0.00 0.00 35.30 5.03
3590 3890 4.957684 AGTTACTTTCACTGTGGCTAGT 57.042 40.909 8.11 10.87 0.00 2.57
3595 3895 7.316544 ACTGTTAAAGTTACTTTCACTGTGG 57.683 36.000 23.78 13.87 37.88 4.17
3603 3903 9.538508 ACTCGATGTTACTGTTAAAGTTACTTT 57.461 29.630 14.99 14.99 38.87 2.66
3604 3904 9.538508 AACTCGATGTTACTGTTAAAGTTACTT 57.461 29.630 0.00 0.00 38.87 2.24
3659 3959 6.080969 ACTACCTCTCTCCTCATTAACTCA 57.919 41.667 0.00 0.00 0.00 3.41
3660 3960 7.284820 ACTACTACCTCTCTCCTCATTAACTC 58.715 42.308 0.00 0.00 0.00 3.01
3662 3962 8.212995 ACTACTACTACCTCTCTCCTCATTAAC 58.787 40.741 0.00 0.00 0.00 2.01
3668 3968 7.365497 AGTTACTACTACTACCTCTCTCCTC 57.635 44.000 0.00 0.00 31.21 3.71
3671 3971 8.424133 AGCTAAGTTACTACTACTACCTCTCTC 58.576 40.741 0.00 0.00 33.17 3.20
3672 3972 8.322905 AGCTAAGTTACTACTACTACCTCTCT 57.677 38.462 0.00 0.00 33.17 3.10
3674 3974 9.212593 ACTAGCTAAGTTACTACTACTACCTCT 57.787 37.037 0.00 0.00 33.35 3.69
3695 4106 6.255887 GGACATGTGATGTTACAGTAACTAGC 59.744 42.308 21.56 12.59 45.03 3.42
3712 4193 5.135383 ACTCATATTCCATTGGGACATGTG 58.865 41.667 1.15 2.75 44.89 3.21
3713 4194 5.133322 AGACTCATATTCCATTGGGACATGT 59.867 40.000 0.00 0.00 44.89 3.21
3715 4196 5.919348 AGACTCATATTCCATTGGGACAT 57.081 39.130 2.09 0.00 44.89 3.06
3716 4197 8.375506 GTTATAGACTCATATTCCATTGGGACA 58.624 37.037 2.09 0.00 44.89 4.02
3717 4198 7.824779 GGTTATAGACTCATATTCCATTGGGAC 59.175 40.741 2.09 0.00 44.89 4.46
3719 4200 7.922382 AGGTTATAGACTCATATTCCATTGGG 58.078 38.462 2.09 0.00 0.00 4.12
3739 4220 9.573166 ACATGCATAGCTTCATTTATTAGGTTA 57.427 29.630 0.00 0.00 0.00 2.85
3740 4221 8.469309 ACATGCATAGCTTCATTTATTAGGTT 57.531 30.769 0.00 0.00 0.00 3.50
3742 4223 9.831737 GTAACATGCATAGCTTCATTTATTAGG 57.168 33.333 0.00 0.00 0.00 2.69
3783 4264 5.670792 TGTTACTACCTTCATAGTGGGTG 57.329 43.478 0.00 0.00 36.09 4.61
3784 4265 5.130477 CCATGTTACTACCTTCATAGTGGGT 59.870 44.000 0.00 0.00 36.09 4.51
3785 4266 5.130477 ACCATGTTACTACCTTCATAGTGGG 59.870 44.000 0.00 0.00 36.09 4.61
3786 4267 6.098409 AGACCATGTTACTACCTTCATAGTGG 59.902 42.308 0.00 0.00 36.09 4.00
3789 4270 7.724506 TCCTAGACCATGTTACTACCTTCATAG 59.275 40.741 0.00 0.00 0.00 2.23
3790 4271 7.589081 TCCTAGACCATGTTACTACCTTCATA 58.411 38.462 0.00 0.00 0.00 2.15
3791 4272 6.441222 TCCTAGACCATGTTACTACCTTCAT 58.559 40.000 0.00 0.00 0.00 2.57
3792 4273 5.834460 TCCTAGACCATGTTACTACCTTCA 58.166 41.667 0.00 0.00 0.00 3.02
3793 4274 6.786967 TTCCTAGACCATGTTACTACCTTC 57.213 41.667 0.00 0.00 0.00 3.46
3794 4275 7.014038 CGTATTCCTAGACCATGTTACTACCTT 59.986 40.741 0.00 0.00 0.00 3.50
3795 4276 6.489361 CGTATTCCTAGACCATGTTACTACCT 59.511 42.308 0.00 0.00 0.00 3.08
3796 4277 6.264067 ACGTATTCCTAGACCATGTTACTACC 59.736 42.308 0.00 0.00 0.00 3.18
3797 4278 7.137426 CACGTATTCCTAGACCATGTTACTAC 58.863 42.308 0.00 0.00 0.00 2.73
3798 4279 6.830324 ACACGTATTCCTAGACCATGTTACTA 59.170 38.462 0.00 0.00 0.00 1.82
3799 4280 5.655532 ACACGTATTCCTAGACCATGTTACT 59.344 40.000 0.00 0.00 0.00 2.24
3800 4281 5.899299 ACACGTATTCCTAGACCATGTTAC 58.101 41.667 0.00 0.00 0.00 2.50
3801 4282 7.286087 ACATACACGTATTCCTAGACCATGTTA 59.714 37.037 0.00 0.00 0.00 2.41
3802 4283 6.097839 ACATACACGTATTCCTAGACCATGTT 59.902 38.462 0.00 0.00 0.00 2.71
3803 4284 5.597182 ACATACACGTATTCCTAGACCATGT 59.403 40.000 0.00 0.00 0.00 3.21
3804 4285 6.085555 ACATACACGTATTCCTAGACCATG 57.914 41.667 0.00 0.00 0.00 3.66
3805 4286 6.726490 AACATACACGTATTCCTAGACCAT 57.274 37.500 0.00 0.00 0.00 3.55
3806 4287 6.830324 AGTAACATACACGTATTCCTAGACCA 59.170 38.462 0.00 0.00 0.00 4.02
3807 4288 7.228308 AGAGTAACATACACGTATTCCTAGACC 59.772 40.741 0.00 0.00 0.00 3.85
3808 4289 8.152309 AGAGTAACATACACGTATTCCTAGAC 57.848 38.462 0.00 0.00 0.00 2.59
3809 4290 8.743085 AAGAGTAACATACACGTATTCCTAGA 57.257 34.615 0.00 0.00 0.00 2.43
3810 4291 8.618677 TGAAGAGTAACATACACGTATTCCTAG 58.381 37.037 0.00 0.00 0.00 3.02
3811 4292 8.510243 TGAAGAGTAACATACACGTATTCCTA 57.490 34.615 0.00 0.00 0.00 2.94
3812 4293 7.400599 TGAAGAGTAACATACACGTATTCCT 57.599 36.000 0.00 0.00 0.00 3.36
3813 4294 8.540492 CAATGAAGAGTAACATACACGTATTCC 58.460 37.037 0.00 0.00 0.00 3.01
3814 4295 9.084164 ACAATGAAGAGTAACATACACGTATTC 57.916 33.333 0.00 0.00 0.00 1.75
3815 4296 8.869897 CACAATGAAGAGTAACATACACGTATT 58.130 33.333 0.00 0.00 0.00 1.89
3816 4297 7.491372 CCACAATGAAGAGTAACATACACGTAT 59.509 37.037 0.00 0.00 0.00 3.06
3817 4298 6.809689 CCACAATGAAGAGTAACATACACGTA 59.190 38.462 0.00 0.00 0.00 3.57
3818 4299 5.637810 CCACAATGAAGAGTAACATACACGT 59.362 40.000 0.00 0.00 0.00 4.49
3819 4300 5.445939 GCCACAATGAAGAGTAACATACACG 60.446 44.000 0.00 0.00 0.00 4.49
3820 4301 5.643777 AGCCACAATGAAGAGTAACATACAC 59.356 40.000 0.00 0.00 0.00 2.90
3821 4302 5.804639 AGCCACAATGAAGAGTAACATACA 58.195 37.500 0.00 0.00 0.00 2.29
3822 4303 7.042335 ACTAGCCACAATGAAGAGTAACATAC 58.958 38.462 0.00 0.00 0.00 2.39
3823 4304 7.124298 AGACTAGCCACAATGAAGAGTAACATA 59.876 37.037 0.00 0.00 0.00 2.29
3824 4305 6.054860 ACTAGCCACAATGAAGAGTAACAT 57.945 37.500 0.00 0.00 0.00 2.71
3825 4306 5.246203 AGACTAGCCACAATGAAGAGTAACA 59.754 40.000 0.00 0.00 0.00 2.41
3826 4307 5.725362 AGACTAGCCACAATGAAGAGTAAC 58.275 41.667 0.00 0.00 0.00 2.50
3827 4308 6.360370 AAGACTAGCCACAATGAAGAGTAA 57.640 37.500 0.00 0.00 0.00 2.24
3828 4309 7.342026 TCATAAGACTAGCCACAATGAAGAGTA 59.658 37.037 0.00 0.00 0.00 2.59
3829 4310 4.899352 AAGACTAGCCACAATGAAGAGT 57.101 40.909 0.00 0.00 0.00 3.24
3830 4311 6.577103 TCATAAGACTAGCCACAATGAAGAG 58.423 40.000 0.00 0.00 0.00 2.85
3831 4312 6.544928 TCATAAGACTAGCCACAATGAAGA 57.455 37.500 0.00 0.00 0.00 2.87
3832 4313 6.259608 CCTTCATAAGACTAGCCACAATGAAG 59.740 42.308 18.95 18.95 44.12 3.02
3833 4314 6.115446 CCTTCATAAGACTAGCCACAATGAA 58.885 40.000 0.00 0.00 32.60 2.57
3834 4315 5.189736 ACCTTCATAAGACTAGCCACAATGA 59.810 40.000 0.00 0.00 0.00 2.57
3835 4316 5.431765 ACCTTCATAAGACTAGCCACAATG 58.568 41.667 0.00 0.00 0.00 2.82
3836 4317 5.700402 ACCTTCATAAGACTAGCCACAAT 57.300 39.130 0.00 0.00 0.00 2.71
3837 4318 5.720041 ACTACCTTCATAAGACTAGCCACAA 59.280 40.000 0.00 0.00 0.00 3.33
3838 4319 5.269991 ACTACCTTCATAAGACTAGCCACA 58.730 41.667 0.00 0.00 0.00 4.17
3839 4320 5.855740 ACTACCTTCATAAGACTAGCCAC 57.144 43.478 0.00 0.00 0.00 5.01
3840 4321 7.124052 AGTTACTACCTTCATAAGACTAGCCA 58.876 38.462 0.00 0.00 0.00 4.75
3841 4322 7.585579 AGTTACTACCTTCATAAGACTAGCC 57.414 40.000 0.00 0.00 0.00 3.93
3845 4326 9.978336 AGTCTAAGTTACTACCTTCATAAGACT 57.022 33.333 0.00 0.00 32.91 3.24
3860 4341 9.186323 CATGCATATGACACTAGTCTAAGTTAC 57.814 37.037 6.97 0.00 45.20 2.50
3863 4344 7.588497 TCATGCATATGACACTAGTCTAAGT 57.412 36.000 6.97 0.00 45.20 2.24
3886 4367 7.221067 GTCATGCATGTAACTTAGACTAGTGTC 59.779 40.741 25.43 0.00 43.22 3.67
3887 4368 7.036220 GTCATGCATGTAACTTAGACTAGTGT 58.964 38.462 25.43 0.00 0.00 3.55
3888 4369 7.009631 GTGTCATGCATGTAACTTAGACTAGTG 59.990 40.741 25.43 0.00 0.00 2.74
3889 4370 7.036220 GTGTCATGCATGTAACTTAGACTAGT 58.964 38.462 25.43 0.00 0.00 2.57
3890 4371 7.261325 AGTGTCATGCATGTAACTTAGACTAG 58.739 38.462 25.43 0.00 0.00 2.57
3891 4372 7.170393 AGTGTCATGCATGTAACTTAGACTA 57.830 36.000 25.43 0.00 0.00 2.59
3892 4373 6.042638 AGTGTCATGCATGTAACTTAGACT 57.957 37.500 25.43 15.66 0.00 3.24
3893 4374 7.036220 ACTAGTGTCATGCATGTAACTTAGAC 58.964 38.462 29.05 17.96 0.00 2.59
3894 4375 7.122799 AGACTAGTGTCATGCATGTAACTTAGA 59.877 37.037 29.05 17.41 45.20 2.10
3895 4376 7.261325 AGACTAGTGTCATGCATGTAACTTAG 58.739 38.462 29.05 24.72 45.20 2.18
3896 4377 7.170393 AGACTAGTGTCATGCATGTAACTTA 57.830 36.000 29.05 18.76 45.20 2.24
3897 4378 6.042638 AGACTAGTGTCATGCATGTAACTT 57.957 37.500 29.05 18.78 45.20 2.66
3898 4379 5.667539 AGACTAGTGTCATGCATGTAACT 57.332 39.130 27.82 27.82 45.20 2.24
3899 4380 7.036220 ACTTAGACTAGTGTCATGCATGTAAC 58.964 38.462 25.43 22.31 45.20 2.50
3900 4381 7.170393 ACTTAGACTAGTGTCATGCATGTAA 57.830 36.000 25.43 12.69 45.20 2.41
3901 4382 6.775594 ACTTAGACTAGTGTCATGCATGTA 57.224 37.500 25.43 13.63 45.20 2.29
3902 4383 5.667539 ACTTAGACTAGTGTCATGCATGT 57.332 39.130 25.43 9.58 45.20 3.21
3903 4384 7.261325 AGTAACTTAGACTAGTGTCATGCATG 58.739 38.462 21.07 21.07 45.20 4.06
3904 4385 7.411486 AGTAACTTAGACTAGTGTCATGCAT 57.589 36.000 0.00 0.00 45.20 3.96
3905 4386 6.835819 AGTAACTTAGACTAGTGTCATGCA 57.164 37.500 0.00 0.00 45.20 3.96
3906 4387 7.275999 GGAAAGTAACTTAGACTAGTGTCATGC 59.724 40.741 0.00 0.00 45.20 4.06
3907 4388 8.304596 TGGAAAGTAACTTAGACTAGTGTCATG 58.695 37.037 0.00 0.00 45.20 3.07
3908 4389 8.305317 GTGGAAAGTAACTTAGACTAGTGTCAT 58.695 37.037 0.00 0.00 45.20 3.06
3909 4390 7.504911 AGTGGAAAGTAACTTAGACTAGTGTCA 59.495 37.037 0.00 0.00 45.20 3.58
3910 4391 7.884257 AGTGGAAAGTAACTTAGACTAGTGTC 58.116 38.462 0.00 0.00 43.22 3.67
3918 4399 7.578955 GCTGGTCATAGTGGAAAGTAACTTAGA 60.579 40.741 0.00 0.00 0.00 2.10
3929 4410 2.170607 GCTAAGGCTGGTCATAGTGGAA 59.829 50.000 0.00 0.00 35.22 3.53
3930 4411 1.762957 GCTAAGGCTGGTCATAGTGGA 59.237 52.381 0.00 0.00 35.22 4.02
3949 4430 4.389077 GTGTATGTTACTCTTCACTGTGGC 59.611 45.833 8.11 0.00 0.00 5.01
3950 4431 5.784177 AGTGTATGTTACTCTTCACTGTGG 58.216 41.667 8.11 0.00 35.32 4.17
3951 4432 7.594714 ACTAGTGTATGTTACTCTTCACTGTG 58.405 38.462 0.17 0.17 36.89 3.66
3953 4434 9.557338 GTTACTAGTGTATGTTACTCTTCACTG 57.443 37.037 5.39 0.00 36.89 3.66
3954 4435 9.293404 TGTTACTAGTGTATGTTACTCTTCACT 57.707 33.333 5.39 0.00 39.11 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.