Multiple sequence alignment - TraesCS4A01G100800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G100800 chr4A 100.000 2729 0 0 1 2729 113326338 113323610 0.000000e+00 5040.0
1 TraesCS4A01G100800 chr4D 94.160 1935 68 20 814 2729 352124639 352126547 0.000000e+00 2905.0
2 TraesCS4A01G100800 chr4B 90.434 2028 108 46 737 2729 435441813 435439837 0.000000e+00 2591.0
3 TraesCS4A01G100800 chr4B 100.000 48 0 0 687 734 435442665 435442618 3.740000e-14 89.8
4 TraesCS4A01G100800 chr2D 84.034 119 17 1 603 721 577605632 577605516 2.220000e-21 113.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G100800 chr4A 113323610 113326338 2728 True 5040.0 5040 100.000 1 2729 1 chr4A.!!$R1 2728
1 TraesCS4A01G100800 chr4D 352124639 352126547 1908 False 2905.0 2905 94.160 814 2729 1 chr4D.!!$F1 1915
2 TraesCS4A01G100800 chr4B 435439837 435442665 2828 True 1340.4 2591 95.217 687 2729 2 chr4B.!!$R1 2042

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
605 606 0.030297 ATCCCCTCTCTGCCTGTCAT 60.03 55.0 0.0 0.0 0.0 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2172 3016 0.033991 TGCTCCTCGCTCTTCTAGGT 60.034 55.0 0.0 0.0 40.11 3.08 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
57 58 7.832503 ATTGGAAACGAATCATGAAATTTCC 57.167 32.000 23.45 23.45 43.50 3.13
60 61 7.049140 GGAAACGAATCATGAAATTTCCAAC 57.951 36.000 24.39 9.17 42.98 3.77
61 62 6.644592 GGAAACGAATCATGAAATTTCCAACA 59.355 34.615 24.39 0.00 42.98 3.33
62 63 7.170658 GGAAACGAATCATGAAATTTCCAACAA 59.829 33.333 24.39 0.00 42.98 2.83
63 64 7.642071 AACGAATCATGAAATTTCCAACAAG 57.358 32.000 15.48 4.72 0.00 3.16
64 65 6.748132 ACGAATCATGAAATTTCCAACAAGT 58.252 32.000 15.48 5.29 0.00 3.16
65 66 7.209475 ACGAATCATGAAATTTCCAACAAGTT 58.791 30.769 15.48 2.10 0.00 2.66
66 67 7.382218 ACGAATCATGAAATTTCCAACAAGTTC 59.618 33.333 15.48 9.28 32.53 3.01
67 68 7.381948 CGAATCATGAAATTTCCAACAAGTTCA 59.618 33.333 15.48 0.00 42.96 3.18
68 69 9.211485 GAATCATGAAATTTCCAACAAGTTCAT 57.789 29.630 15.48 3.85 46.97 2.57
73 74 8.961294 TGAAATTTCCAACAAGTTCATGAATT 57.039 26.923 12.12 4.21 36.18 2.17
74 75 9.393512 TGAAATTTCCAACAAGTTCATGAATTT 57.606 25.926 12.12 11.05 36.18 1.82
75 76 9.654417 GAAATTTCCAACAAGTTCATGAATTTG 57.346 29.630 30.99 30.99 41.79 2.32
76 77 8.961294 AATTTCCAACAAGTTCATGAATTTGA 57.039 26.923 36.19 20.79 39.46 2.69
77 78 8.597662 ATTTCCAACAAGTTCATGAATTTGAG 57.402 30.769 36.19 28.30 39.46 3.02
78 79 6.957920 TCCAACAAGTTCATGAATTTGAGA 57.042 33.333 36.19 27.58 39.46 3.27
79 80 7.345422 TCCAACAAGTTCATGAATTTGAGAA 57.655 32.000 36.19 21.35 39.46 2.87
80 81 7.780064 TCCAACAAGTTCATGAATTTGAGAAA 58.220 30.769 36.19 21.61 39.46 2.52
81 82 8.256605 TCCAACAAGTTCATGAATTTGAGAAAA 58.743 29.630 36.19 20.59 39.46 2.29
82 83 8.881743 CCAACAAGTTCATGAATTTGAGAAAAA 58.118 29.630 36.19 1.22 39.46 1.94
108 109 9.757227 AAACTCGTGGATTTGAATAAAATTTCA 57.243 25.926 0.00 0.00 38.64 2.69
109 110 8.742554 ACTCGTGGATTTGAATAAAATTTCAC 57.257 30.769 0.00 0.00 38.64 3.18
110 111 8.356657 ACTCGTGGATTTGAATAAAATTTCACA 58.643 29.630 0.00 0.00 39.76 3.58
111 112 9.190858 CTCGTGGATTTGAATAAAATTTCACAA 57.809 29.630 0.00 0.00 39.76 3.33
112 113 9.534565 TCGTGGATTTGAATAAAATTTCACAAA 57.465 25.926 11.42 11.42 39.76 2.83
172 173 9.601971 TTCGTAATTTAGAAACACATGTAAAGC 57.398 29.630 0.00 0.00 0.00 3.51
173 174 8.775527 TCGTAATTTAGAAACACATGTAAAGCA 58.224 29.630 0.00 0.00 0.00 3.91
174 175 9.388346 CGTAATTTAGAAACACATGTAAAGCAA 57.612 29.630 0.00 0.00 0.00 3.91
179 180 9.646427 TTTAGAAACACATGTAAAGCAAAAAGT 57.354 25.926 0.00 0.00 0.00 2.66
180 181 9.646427 TTAGAAACACATGTAAAGCAAAAAGTT 57.354 25.926 0.00 0.00 0.00 2.66
181 182 7.962917 AGAAACACATGTAAAGCAAAAAGTTG 58.037 30.769 0.00 0.00 37.83 3.16
182 183 7.816995 AGAAACACATGTAAAGCAAAAAGTTGA 59.183 29.630 0.00 0.00 36.83 3.18
183 184 6.885735 ACACATGTAAAGCAAAAAGTTGAC 57.114 33.333 0.00 0.00 36.83 3.18
184 185 5.514914 ACACATGTAAAGCAAAAAGTTGACG 59.485 36.000 0.00 0.00 36.83 4.35
185 186 5.741510 CACATGTAAAGCAAAAAGTTGACGA 59.258 36.000 0.00 0.00 36.83 4.20
186 187 6.252441 CACATGTAAAGCAAAAAGTTGACGAA 59.748 34.615 0.00 0.00 36.83 3.85
187 188 6.978080 ACATGTAAAGCAAAAAGTTGACGAAT 59.022 30.769 0.00 0.00 36.83 3.34
188 189 7.491048 ACATGTAAAGCAAAAAGTTGACGAATT 59.509 29.630 0.00 0.00 36.83 2.17
189 190 7.820044 TGTAAAGCAAAAAGTTGACGAATTT 57.180 28.000 0.00 0.00 36.83 1.82
190 191 7.670916 TGTAAAGCAAAAAGTTGACGAATTTG 58.329 30.769 0.00 0.00 36.83 2.32
191 192 6.959671 AAAGCAAAAAGTTGACGAATTTGA 57.040 29.167 0.00 0.00 36.83 2.69
192 193 6.959671 AAGCAAAAAGTTGACGAATTTGAA 57.040 29.167 0.00 0.00 36.83 2.69
193 194 6.959671 AGCAAAAAGTTGACGAATTTGAAA 57.040 29.167 0.00 0.00 36.83 2.69
194 195 7.357951 AGCAAAAAGTTGACGAATTTGAAAA 57.642 28.000 0.00 0.00 36.83 2.29
195 196 7.455447 AGCAAAAAGTTGACGAATTTGAAAAG 58.545 30.769 0.00 0.00 36.83 2.27
196 197 6.682441 GCAAAAAGTTGACGAATTTGAAAAGG 59.318 34.615 0.00 0.00 36.83 3.11
197 198 7.623297 GCAAAAAGTTGACGAATTTGAAAAGGT 60.623 33.333 0.00 0.00 36.83 3.50
198 199 8.865001 CAAAAAGTTGACGAATTTGAAAAGGTA 58.135 29.630 0.00 0.00 36.83 3.08
199 200 7.980742 AAAGTTGACGAATTTGAAAAGGTAC 57.019 32.000 0.00 0.00 0.00 3.34
200 201 5.744490 AGTTGACGAATTTGAAAAGGTACG 58.256 37.500 0.00 0.00 0.00 3.67
201 202 4.136517 TGACGAATTTGAAAAGGTACGC 57.863 40.909 0.00 0.00 0.00 4.42
202 203 3.560481 TGACGAATTTGAAAAGGTACGCA 59.440 39.130 0.00 0.00 0.00 5.24
203 204 4.035324 TGACGAATTTGAAAAGGTACGCAA 59.965 37.500 0.00 0.00 0.00 4.85
204 205 4.922719 ACGAATTTGAAAAGGTACGCAAA 58.077 34.783 0.00 0.00 35.07 3.68
205 206 4.736307 ACGAATTTGAAAAGGTACGCAAAC 59.264 37.500 0.00 0.00 33.62 2.93
206 207 4.973663 CGAATTTGAAAAGGTACGCAAACT 59.026 37.500 0.00 0.00 33.62 2.66
207 208 5.457473 CGAATTTGAAAAGGTACGCAAACTT 59.543 36.000 0.00 0.00 33.62 2.66
208 209 6.559521 CGAATTTGAAAAGGTACGCAAACTTG 60.560 38.462 0.00 0.00 33.62 3.16
209 210 4.966965 TTGAAAAGGTACGCAAACTTGA 57.033 36.364 0.00 0.00 0.00 3.02
210 211 5.508200 TTGAAAAGGTACGCAAACTTGAT 57.492 34.783 0.00 0.00 0.00 2.57
211 212 5.508200 TGAAAAGGTACGCAAACTTGATT 57.492 34.783 0.00 0.00 0.00 2.57
212 213 5.897050 TGAAAAGGTACGCAAACTTGATTT 58.103 33.333 0.00 0.00 0.00 2.17
213 214 6.334202 TGAAAAGGTACGCAAACTTGATTTT 58.666 32.000 0.00 0.00 0.00 1.82
214 215 6.814146 TGAAAAGGTACGCAAACTTGATTTTT 59.186 30.769 0.00 0.00 0.00 1.94
215 216 7.974501 TGAAAAGGTACGCAAACTTGATTTTTA 59.025 29.630 0.00 0.00 0.00 1.52
216 217 7.688478 AAAGGTACGCAAACTTGATTTTTAC 57.312 32.000 0.00 0.00 0.00 2.01
217 218 6.380095 AGGTACGCAAACTTGATTTTTACA 57.620 33.333 0.00 0.00 0.00 2.41
218 219 6.435428 AGGTACGCAAACTTGATTTTTACAG 58.565 36.000 0.00 0.00 0.00 2.74
219 220 6.261381 AGGTACGCAAACTTGATTTTTACAGA 59.739 34.615 0.00 0.00 0.00 3.41
220 221 7.040686 AGGTACGCAAACTTGATTTTTACAGAT 60.041 33.333 0.00 0.00 0.00 2.90
221 222 7.593644 GGTACGCAAACTTGATTTTTACAGATT 59.406 33.333 0.00 0.00 0.00 2.40
222 223 8.964150 GTACGCAAACTTGATTTTTACAGATTT 58.036 29.630 0.00 0.00 0.00 2.17
223 224 7.840489 ACGCAAACTTGATTTTTACAGATTTG 58.160 30.769 0.00 0.00 32.37 2.32
224 225 7.704472 ACGCAAACTTGATTTTTACAGATTTGA 59.296 29.630 0.00 0.00 31.62 2.69
225 226 8.209869 CGCAAACTTGATTTTTACAGATTTGAG 58.790 33.333 0.00 0.00 31.62 3.02
226 227 9.248291 GCAAACTTGATTTTTACAGATTTGAGA 57.752 29.630 0.00 0.00 31.62 3.27
317 318 7.908827 AAAACAAAAAGAAATAAACCCGTGT 57.091 28.000 0.00 0.00 0.00 4.49
318 319 8.999220 AAAACAAAAAGAAATAAACCCGTGTA 57.001 26.923 0.00 0.00 0.00 2.90
319 320 8.999220 AAACAAAAAGAAATAAACCCGTGTAA 57.001 26.923 0.00 0.00 0.00 2.41
320 321 8.999220 AACAAAAAGAAATAAACCCGTGTAAA 57.001 26.923 0.00 0.00 0.00 2.01
321 322 8.999220 ACAAAAAGAAATAAACCCGTGTAAAA 57.001 26.923 0.00 0.00 0.00 1.52
322 323 9.602568 ACAAAAAGAAATAAACCCGTGTAAAAT 57.397 25.926 0.00 0.00 0.00 1.82
324 325 8.821147 AAAAGAAATAAACCCGTGTAAAATCC 57.179 30.769 0.00 0.00 0.00 3.01
325 326 7.527568 AAGAAATAAACCCGTGTAAAATCCA 57.472 32.000 0.00 0.00 0.00 3.41
326 327 7.153217 AGAAATAAACCCGTGTAAAATCCAG 57.847 36.000 0.00 0.00 0.00 3.86
327 328 5.907866 AATAAACCCGTGTAAAATCCAGG 57.092 39.130 0.00 0.00 0.00 4.45
328 329 2.963599 AACCCGTGTAAAATCCAGGT 57.036 45.000 0.00 0.00 0.00 4.00
329 330 2.484742 ACCCGTGTAAAATCCAGGTC 57.515 50.000 0.00 0.00 0.00 3.85
330 331 1.338389 ACCCGTGTAAAATCCAGGTCG 60.338 52.381 0.00 0.00 0.00 4.79
331 332 1.365699 CCGTGTAAAATCCAGGTCGG 58.634 55.000 0.00 0.00 0.00 4.79
340 341 3.159141 TCCAGGTCGGAAGAAACCT 57.841 52.632 0.00 0.00 46.94 3.50
341 342 2.314071 TCCAGGTCGGAAGAAACCTA 57.686 50.000 0.00 0.00 44.13 3.08
342 343 2.612000 TCCAGGTCGGAAGAAACCTAA 58.388 47.619 0.00 0.00 44.13 2.69
343 344 2.974099 TCCAGGTCGGAAGAAACCTAAA 59.026 45.455 0.00 0.00 44.13 1.85
344 345 3.007614 TCCAGGTCGGAAGAAACCTAAAG 59.992 47.826 0.00 0.00 44.13 1.85
345 346 3.007614 CCAGGTCGGAAGAAACCTAAAGA 59.992 47.826 0.00 0.00 44.13 2.52
346 347 4.504340 CCAGGTCGGAAGAAACCTAAAGAA 60.504 45.833 0.00 0.00 44.13 2.52
347 348 5.061179 CAGGTCGGAAGAAACCTAAAGAAA 58.939 41.667 0.00 0.00 44.13 2.52
348 349 5.529800 CAGGTCGGAAGAAACCTAAAGAAAA 59.470 40.000 0.00 0.00 44.13 2.29
349 350 6.038936 CAGGTCGGAAGAAACCTAAAGAAAAA 59.961 38.462 0.00 0.00 44.13 1.94
350 351 6.039047 AGGTCGGAAGAAACCTAAAGAAAAAC 59.961 38.462 0.00 0.00 44.12 2.43
351 352 6.183360 GGTCGGAAGAAACCTAAAGAAAAACA 60.183 38.462 0.00 0.00 45.01 2.83
352 353 6.690098 GTCGGAAGAAACCTAAAGAAAAACAC 59.310 38.462 0.00 0.00 45.01 3.32
353 354 5.975344 CGGAAGAAACCTAAAGAAAAACACC 59.025 40.000 0.00 0.00 0.00 4.16
354 355 6.278363 GGAAGAAACCTAAAGAAAAACACCC 58.722 40.000 0.00 0.00 0.00 4.61
355 356 5.509716 AGAAACCTAAAGAAAAACACCCG 57.490 39.130 0.00 0.00 0.00 5.28
356 357 4.340097 AGAAACCTAAAGAAAAACACCCGG 59.660 41.667 0.00 0.00 0.00 5.73
357 358 3.581265 ACCTAAAGAAAAACACCCGGA 57.419 42.857 0.73 0.00 0.00 5.14
358 359 3.900971 ACCTAAAGAAAAACACCCGGAA 58.099 40.909 0.73 0.00 0.00 4.30
359 360 4.279982 ACCTAAAGAAAAACACCCGGAAA 58.720 39.130 0.73 0.00 0.00 3.13
360 361 4.710865 ACCTAAAGAAAAACACCCGGAAAA 59.289 37.500 0.73 0.00 0.00 2.29
361 362 5.187381 ACCTAAAGAAAAACACCCGGAAAAA 59.813 36.000 0.73 0.00 0.00 1.94
362 363 5.521010 CCTAAAGAAAAACACCCGGAAAAAC 59.479 40.000 0.73 0.00 0.00 2.43
363 364 3.530265 AGAAAAACACCCGGAAAAACC 57.470 42.857 0.73 0.00 0.00 3.27
375 376 3.400505 GGAAAAACCGGCGAGAAATAG 57.599 47.619 9.30 0.00 0.00 1.73
376 377 2.477357 GGAAAAACCGGCGAGAAATAGC 60.477 50.000 9.30 0.00 0.00 2.97
383 384 2.815722 GCGAGAAATAGCCCTAGCG 58.184 57.895 0.00 0.00 46.67 4.26
384 385 0.032267 GCGAGAAATAGCCCTAGCGT 59.968 55.000 0.00 0.00 46.67 5.07
385 386 1.772182 CGAGAAATAGCCCTAGCGTG 58.228 55.000 0.00 0.00 46.67 5.34
386 387 1.337071 CGAGAAATAGCCCTAGCGTGA 59.663 52.381 0.00 0.00 46.67 4.35
387 388 2.029828 CGAGAAATAGCCCTAGCGTGAT 60.030 50.000 0.00 0.00 46.67 3.06
388 389 3.553096 CGAGAAATAGCCCTAGCGTGATT 60.553 47.826 0.00 0.00 46.67 2.57
389 390 4.381411 GAGAAATAGCCCTAGCGTGATTT 58.619 43.478 0.00 0.00 46.67 2.17
390 391 4.781934 AGAAATAGCCCTAGCGTGATTTT 58.218 39.130 0.00 0.00 46.67 1.82
391 392 5.193679 AGAAATAGCCCTAGCGTGATTTTT 58.806 37.500 0.00 0.00 46.67 1.94
411 412 6.799926 TTTTTGTTTTGAGAAAAGCTTGCT 57.200 29.167 0.00 0.00 0.00 3.91
412 413 7.897575 TTTTTGTTTTGAGAAAAGCTTGCTA 57.102 28.000 0.00 0.00 0.00 3.49
413 414 8.491331 TTTTTGTTTTGAGAAAAGCTTGCTAT 57.509 26.923 0.00 0.00 0.00 2.97
414 415 7.467557 TTTGTTTTGAGAAAAGCTTGCTATG 57.532 32.000 0.00 0.00 0.00 2.23
415 416 4.984161 TGTTTTGAGAAAAGCTTGCTATGC 59.016 37.500 0.00 0.00 0.00 3.14
416 417 3.855689 TTGAGAAAAGCTTGCTATGCC 57.144 42.857 0.00 0.00 0.00 4.40
417 418 3.077484 TGAGAAAAGCTTGCTATGCCT 57.923 42.857 0.00 0.00 0.00 4.75
418 419 3.424703 TGAGAAAAGCTTGCTATGCCTT 58.575 40.909 0.00 0.00 0.00 4.35
419 420 3.828451 TGAGAAAAGCTTGCTATGCCTTT 59.172 39.130 0.00 0.00 0.00 3.11
420 421 5.009631 TGAGAAAAGCTTGCTATGCCTTTA 58.990 37.500 0.00 0.00 0.00 1.85
421 422 5.653769 TGAGAAAAGCTTGCTATGCCTTTAT 59.346 36.000 0.00 0.00 0.00 1.40
422 423 6.153340 TGAGAAAAGCTTGCTATGCCTTTATT 59.847 34.615 0.00 0.00 0.00 1.40
423 424 6.335777 AGAAAAGCTTGCTATGCCTTTATTG 58.664 36.000 0.00 0.00 0.00 1.90
424 425 5.920193 AAAGCTTGCTATGCCTTTATTGA 57.080 34.783 0.00 0.00 0.00 2.57
425 426 6.475596 AAAGCTTGCTATGCCTTTATTGAT 57.524 33.333 0.00 0.00 0.00 2.57
426 427 6.475596 AAGCTTGCTATGCCTTTATTGATT 57.524 33.333 0.00 0.00 0.00 2.57
427 428 7.587037 AAGCTTGCTATGCCTTTATTGATTA 57.413 32.000 0.00 0.00 0.00 1.75
428 429 7.211966 AGCTTGCTATGCCTTTATTGATTAG 57.788 36.000 0.00 0.00 0.00 1.73
429 430 5.860716 GCTTGCTATGCCTTTATTGATTAGC 59.139 40.000 0.00 0.00 0.00 3.09
430 431 6.294397 GCTTGCTATGCCTTTATTGATTAGCT 60.294 38.462 0.00 0.00 33.49 3.32
431 432 7.094634 GCTTGCTATGCCTTTATTGATTAGCTA 60.095 37.037 0.00 0.00 33.49 3.32
432 433 8.690203 TTGCTATGCCTTTATTGATTAGCTAA 57.310 30.769 8.99 8.99 33.49 3.09
433 434 8.690203 TGCTATGCCTTTATTGATTAGCTAAA 57.310 30.769 10.85 0.00 33.49 1.85
434 435 9.130661 TGCTATGCCTTTATTGATTAGCTAAAA 57.869 29.630 10.85 1.34 33.49 1.52
438 439 9.971922 ATGCCTTTATTGATTAGCTAAAATGTC 57.028 29.630 10.85 4.06 0.00 3.06
439 440 9.189156 TGCCTTTATTGATTAGCTAAAATGTCT 57.811 29.630 10.85 0.00 0.00 3.41
465 466 8.821686 ATAGAAATTACAATTGGGTCATGTGA 57.178 30.769 10.83 0.00 0.00 3.58
466 467 7.161773 AGAAATTACAATTGGGTCATGTGAG 57.838 36.000 10.83 0.00 0.00 3.51
467 468 6.947733 AGAAATTACAATTGGGTCATGTGAGA 59.052 34.615 10.83 0.00 0.00 3.27
468 469 7.616935 AGAAATTACAATTGGGTCATGTGAGAT 59.383 33.333 10.83 0.00 0.00 2.75
469 470 6.704289 ATTACAATTGGGTCATGTGAGATG 57.296 37.500 10.83 0.00 0.00 2.90
470 471 2.756760 ACAATTGGGTCATGTGAGATGC 59.243 45.455 10.83 0.00 0.00 3.91
471 472 2.062971 ATTGGGTCATGTGAGATGCC 57.937 50.000 0.00 0.00 0.00 4.40
472 473 0.034186 TTGGGTCATGTGAGATGCCC 60.034 55.000 12.83 12.83 36.53 5.36
473 474 1.206811 TGGGTCATGTGAGATGCCCA 61.207 55.000 16.72 16.72 40.48 5.36
474 475 0.034186 GGGTCATGTGAGATGCCCAA 60.034 55.000 14.22 0.00 36.24 4.12
475 476 1.098050 GGTCATGTGAGATGCCCAAC 58.902 55.000 0.00 0.00 0.00 3.77
476 477 1.098050 GTCATGTGAGATGCCCAACC 58.902 55.000 0.00 0.00 0.00 3.77
477 478 0.697658 TCATGTGAGATGCCCAACCA 59.302 50.000 0.00 0.00 0.00 3.67
478 479 0.813184 CATGTGAGATGCCCAACCAC 59.187 55.000 0.00 0.00 0.00 4.16
479 480 0.405198 ATGTGAGATGCCCAACCACA 59.595 50.000 0.00 0.00 41.24 4.17
480 481 0.250858 TGTGAGATGCCCAACCACAG 60.251 55.000 0.00 0.00 33.42 3.66
481 482 0.036732 GTGAGATGCCCAACCACAGA 59.963 55.000 0.00 0.00 0.00 3.41
482 483 0.994247 TGAGATGCCCAACCACAGAT 59.006 50.000 0.00 0.00 0.00 2.90
483 484 1.340308 TGAGATGCCCAACCACAGATG 60.340 52.381 0.00 0.00 0.00 2.90
484 485 0.682209 AGATGCCCAACCACAGATGC 60.682 55.000 0.00 0.00 0.00 3.91
485 486 1.669999 GATGCCCAACCACAGATGCC 61.670 60.000 0.00 0.00 0.00 4.40
486 487 2.036256 GCCCAACCACAGATGCCT 59.964 61.111 0.00 0.00 0.00 4.75
487 488 2.048603 GCCCAACCACAGATGCCTC 61.049 63.158 0.00 0.00 0.00 4.70
488 489 1.379044 CCCAACCACAGATGCCTCC 60.379 63.158 0.00 0.00 0.00 4.30
489 490 1.379044 CCAACCACAGATGCCTCCC 60.379 63.158 0.00 0.00 0.00 4.30
490 491 1.687612 CAACCACAGATGCCTCCCT 59.312 57.895 0.00 0.00 0.00 4.20
491 492 0.911769 CAACCACAGATGCCTCCCTA 59.088 55.000 0.00 0.00 0.00 3.53
492 493 1.281867 CAACCACAGATGCCTCCCTAA 59.718 52.381 0.00 0.00 0.00 2.69
493 494 1.668826 ACCACAGATGCCTCCCTAAA 58.331 50.000 0.00 0.00 0.00 1.85
494 495 1.561542 ACCACAGATGCCTCCCTAAAG 59.438 52.381 0.00 0.00 0.00 1.85
495 496 1.133976 CCACAGATGCCTCCCTAAAGG 60.134 57.143 0.00 0.00 39.62 3.11
512 513 7.227049 CCTAAAGGGAGATGTAAGATCTCTC 57.773 44.000 12.23 9.17 44.07 3.20
517 518 5.841810 GGGAGATGTAAGATCTCTCTTGTG 58.158 45.833 12.23 0.00 41.31 3.33
518 519 5.221422 GGGAGATGTAAGATCTCTCTTGTGG 60.221 48.000 12.23 0.00 41.31 4.17
519 520 5.362430 GGAGATGTAAGATCTCTCTTGTGGT 59.638 44.000 12.23 0.00 41.83 4.16
520 521 6.219417 AGATGTAAGATCTCTCTTGTGGTG 57.781 41.667 0.00 0.00 41.83 4.17
521 522 4.808414 TGTAAGATCTCTCTTGTGGTGG 57.192 45.455 0.00 0.00 41.83 4.61
522 523 4.160329 TGTAAGATCTCTCTTGTGGTGGT 58.840 43.478 0.00 0.00 41.83 4.16
523 524 5.330233 TGTAAGATCTCTCTTGTGGTGGTA 58.670 41.667 0.00 0.00 41.83 3.25
524 525 4.810191 AAGATCTCTCTTGTGGTGGTAC 57.190 45.455 0.00 0.00 40.28 3.34
525 526 3.100671 AGATCTCTCTTGTGGTGGTACC 58.899 50.000 4.43 4.43 39.22 3.34
526 527 5.001725 AAGATCTCTCTTGTGGTGGTACCA 61.002 45.833 11.60 11.60 42.27 3.25
539 540 4.759516 GTGGTACCACCTGTTTACAATG 57.240 45.455 31.39 0.00 39.58 2.82
540 541 4.139038 GTGGTACCACCTGTTTACAATGT 58.861 43.478 31.39 0.00 39.58 2.71
541 542 5.307204 GTGGTACCACCTGTTTACAATGTA 58.693 41.667 31.39 0.00 39.58 2.29
542 543 5.764192 GTGGTACCACCTGTTTACAATGTAA 59.236 40.000 31.39 1.08 39.58 2.41
543 544 6.262720 GTGGTACCACCTGTTTACAATGTAAA 59.737 38.462 31.39 13.93 39.58 2.01
544 545 6.487331 TGGTACCACCTGTTTACAATGTAAAG 59.513 38.462 17.79 9.80 39.58 1.85
545 546 6.711645 GGTACCACCTGTTTACAATGTAAAGA 59.288 38.462 17.79 15.68 34.73 2.52
546 547 6.877611 ACCACCTGTTTACAATGTAAAGAG 57.122 37.500 26.52 26.52 0.00 2.85
547 548 6.597562 ACCACCTGTTTACAATGTAAAGAGA 58.402 36.000 31.74 14.80 31.77 3.10
548 549 7.231467 ACCACCTGTTTACAATGTAAAGAGAT 58.769 34.615 31.74 20.32 31.77 2.75
549 550 7.724061 ACCACCTGTTTACAATGTAAAGAGATT 59.276 33.333 31.74 20.57 31.77 2.40
550 551 8.576442 CCACCTGTTTACAATGTAAAGAGATTT 58.424 33.333 31.74 18.74 31.77 2.17
551 552 9.398170 CACCTGTTTACAATGTAAAGAGATTTG 57.602 33.333 31.74 23.48 31.77 2.32
552 553 9.349713 ACCTGTTTACAATGTAAAGAGATTTGA 57.650 29.630 31.74 4.80 31.77 2.69
558 559 9.567776 TTACAATGTAAAGAGATTTGAAGGTGA 57.432 29.630 2.97 0.00 0.00 4.02
559 560 8.641498 ACAATGTAAAGAGATTTGAAGGTGAT 57.359 30.769 0.00 0.00 0.00 3.06
560 561 8.734386 ACAATGTAAAGAGATTTGAAGGTGATC 58.266 33.333 0.00 0.00 0.00 2.92
561 562 7.872113 ATGTAAAGAGATTTGAAGGTGATCC 57.128 36.000 0.00 0.00 0.00 3.36
562 563 6.778821 TGTAAAGAGATTTGAAGGTGATCCA 58.221 36.000 0.00 0.00 35.89 3.41
563 564 7.405292 TGTAAAGAGATTTGAAGGTGATCCAT 58.595 34.615 0.00 0.00 35.89 3.41
564 565 7.890127 TGTAAAGAGATTTGAAGGTGATCCATT 59.110 33.333 0.00 0.00 35.89 3.16
565 566 7.787623 AAAGAGATTTGAAGGTGATCCATTT 57.212 32.000 0.00 0.00 35.89 2.32
566 567 7.401955 AAGAGATTTGAAGGTGATCCATTTC 57.598 36.000 0.00 0.00 35.89 2.17
567 568 6.487828 AGAGATTTGAAGGTGATCCATTTCA 58.512 36.000 0.00 0.00 35.89 2.69
568 569 6.950041 AGAGATTTGAAGGTGATCCATTTCAA 59.050 34.615 9.99 9.99 36.65 2.69
569 570 7.122353 AGAGATTTGAAGGTGATCCATTTCAAG 59.878 37.037 12.43 0.00 38.34 3.02
570 571 6.950041 AGATTTGAAGGTGATCCATTTCAAGA 59.050 34.615 12.43 7.42 38.34 3.02
571 572 7.618512 AGATTTGAAGGTGATCCATTTCAAGAT 59.381 33.333 12.43 10.25 38.34 2.40
572 573 6.764308 TTGAAGGTGATCCATTTCAAGATC 57.236 37.500 9.99 0.00 34.87 2.75
573 574 6.070951 TGAAGGTGATCCATTTCAAGATCT 57.929 37.500 0.00 0.00 39.72 2.75
574 575 6.487828 TGAAGGTGATCCATTTCAAGATCTT 58.512 36.000 0.88 0.88 39.72 2.40
575 576 6.376299 TGAAGGTGATCCATTTCAAGATCTTG 59.624 38.462 26.56 26.56 39.72 3.02
576 577 4.643784 AGGTGATCCATTTCAAGATCTTGC 59.356 41.667 27.45 13.18 39.72 4.01
577 578 4.497006 GGTGATCCATTTCAAGATCTTGCG 60.497 45.833 27.45 16.00 39.72 4.85
578 579 4.095483 GTGATCCATTTCAAGATCTTGCGT 59.905 41.667 27.45 14.22 39.72 5.24
579 580 4.333649 TGATCCATTTCAAGATCTTGCGTC 59.666 41.667 27.45 16.69 39.72 5.19
580 581 3.673902 TCCATTTCAAGATCTTGCGTCA 58.326 40.909 27.45 10.24 40.24 4.35
581 582 3.686241 TCCATTTCAAGATCTTGCGTCAG 59.314 43.478 27.45 16.54 40.24 3.51
582 583 3.181503 CCATTTCAAGATCTTGCGTCAGG 60.182 47.826 27.45 20.16 40.24 3.86
583 584 2.099141 TTCAAGATCTTGCGTCAGGG 57.901 50.000 27.45 4.82 40.24 4.45
584 585 1.266178 TCAAGATCTTGCGTCAGGGA 58.734 50.000 27.45 7.75 40.24 4.20
585 586 1.066858 TCAAGATCTTGCGTCAGGGAC 60.067 52.381 27.45 0.00 40.24 4.46
586 587 0.976641 AAGATCTTGCGTCAGGGACA 59.023 50.000 7.30 0.00 32.09 4.02
587 588 1.198713 AGATCTTGCGTCAGGGACAT 58.801 50.000 0.00 0.00 32.09 3.06
588 589 1.137872 AGATCTTGCGTCAGGGACATC 59.862 52.381 0.00 0.00 32.09 3.06
589 590 0.179000 ATCTTGCGTCAGGGACATCC 59.821 55.000 0.00 0.00 32.09 3.51
599 600 3.235369 GGACATCCCCTCTCTGCC 58.765 66.667 0.00 0.00 0.00 4.85
600 601 1.383803 GGACATCCCCTCTCTGCCT 60.384 63.158 0.00 0.00 0.00 4.75
601 602 1.694133 GGACATCCCCTCTCTGCCTG 61.694 65.000 0.00 0.00 0.00 4.85
602 603 0.980231 GACATCCCCTCTCTGCCTGT 60.980 60.000 0.00 0.00 0.00 4.00
603 604 0.980231 ACATCCCCTCTCTGCCTGTC 60.980 60.000 0.00 0.00 0.00 3.51
604 605 0.979709 CATCCCCTCTCTGCCTGTCA 60.980 60.000 0.00 0.00 0.00 3.58
605 606 0.030297 ATCCCCTCTCTGCCTGTCAT 60.030 55.000 0.00 0.00 0.00 3.06
606 607 0.979709 TCCCCTCTCTGCCTGTCATG 60.980 60.000 0.00 0.00 0.00 3.07
607 608 1.153208 CCCTCTCTGCCTGTCATGC 60.153 63.158 0.00 0.00 0.00 4.06
608 609 1.153208 CCTCTCTGCCTGTCATGCC 60.153 63.158 0.00 0.00 0.00 4.40
609 610 1.624479 CCTCTCTGCCTGTCATGCCT 61.624 60.000 0.00 0.00 0.00 4.75
610 611 0.252479 CTCTCTGCCTGTCATGCCTT 59.748 55.000 0.00 0.00 0.00 4.35
611 612 0.035725 TCTCTGCCTGTCATGCCTTG 60.036 55.000 0.00 0.00 0.00 3.61
612 613 0.035725 CTCTGCCTGTCATGCCTTGA 60.036 55.000 0.00 0.00 0.00 3.02
613 614 0.401356 TCTGCCTGTCATGCCTTGAA 59.599 50.000 0.00 0.00 35.70 2.69
614 615 1.005097 TCTGCCTGTCATGCCTTGAAT 59.995 47.619 0.00 0.00 35.70 2.57
615 616 1.134367 CTGCCTGTCATGCCTTGAATG 59.866 52.381 0.00 0.00 35.70 2.67
616 617 1.272037 TGCCTGTCATGCCTTGAATGA 60.272 47.619 0.00 0.00 35.70 2.57
621 622 1.133790 GTCATGCCTTGAATGACCAGC 59.866 52.381 4.15 0.00 45.37 4.85
622 623 1.179152 CATGCCTTGAATGACCAGCA 58.821 50.000 0.00 0.00 34.28 4.41
623 624 1.754803 CATGCCTTGAATGACCAGCAT 59.245 47.619 0.00 0.00 41.40 3.79
624 625 2.804986 TGCCTTGAATGACCAGCATA 57.195 45.000 0.00 0.00 35.78 3.14
625 626 2.646930 TGCCTTGAATGACCAGCATAG 58.353 47.619 0.00 0.00 35.78 2.23
626 627 2.239402 TGCCTTGAATGACCAGCATAGA 59.761 45.455 0.00 0.00 35.78 1.98
627 628 3.117776 TGCCTTGAATGACCAGCATAGAT 60.118 43.478 0.00 0.00 35.78 1.98
628 629 3.252701 GCCTTGAATGACCAGCATAGATG 59.747 47.826 0.00 0.00 35.78 2.90
629 630 4.711399 CCTTGAATGACCAGCATAGATGA 58.289 43.478 0.00 0.00 35.78 2.92
630 631 4.755629 CCTTGAATGACCAGCATAGATGAG 59.244 45.833 0.00 0.00 35.78 2.90
631 632 3.736720 TGAATGACCAGCATAGATGAGC 58.263 45.455 0.00 0.00 35.78 4.26
632 633 2.855209 ATGACCAGCATAGATGAGCC 57.145 50.000 0.00 0.00 34.82 4.70
633 634 0.761187 TGACCAGCATAGATGAGCCC 59.239 55.000 0.00 0.00 0.00 5.19
634 635 1.055040 GACCAGCATAGATGAGCCCT 58.945 55.000 0.00 0.00 0.00 5.19
635 636 0.763652 ACCAGCATAGATGAGCCCTG 59.236 55.000 0.00 0.00 0.00 4.45
636 637 1.054231 CCAGCATAGATGAGCCCTGA 58.946 55.000 0.00 0.00 0.00 3.86
637 638 1.419012 CCAGCATAGATGAGCCCTGAA 59.581 52.381 0.00 0.00 0.00 3.02
638 639 2.158711 CCAGCATAGATGAGCCCTGAAA 60.159 50.000 0.00 0.00 0.00 2.69
639 640 3.548770 CAGCATAGATGAGCCCTGAAAA 58.451 45.455 0.00 0.00 0.00 2.29
640 641 3.564644 CAGCATAGATGAGCCCTGAAAAG 59.435 47.826 0.00 0.00 0.00 2.27
641 642 3.201708 AGCATAGATGAGCCCTGAAAAGT 59.798 43.478 0.00 0.00 0.00 2.66
642 643 3.950395 GCATAGATGAGCCCTGAAAAGTT 59.050 43.478 0.00 0.00 0.00 2.66
643 644 4.036144 GCATAGATGAGCCCTGAAAAGTTC 59.964 45.833 0.00 0.00 0.00 3.01
644 645 3.078891 AGATGAGCCCTGAAAAGTTCC 57.921 47.619 0.00 0.00 0.00 3.62
645 646 2.376518 AGATGAGCCCTGAAAAGTTCCA 59.623 45.455 0.00 0.00 0.00 3.53
646 647 2.978156 TGAGCCCTGAAAAGTTCCAT 57.022 45.000 0.00 0.00 0.00 3.41
647 648 2.795329 TGAGCCCTGAAAAGTTCCATC 58.205 47.619 0.00 0.00 0.00 3.51
648 649 2.108075 TGAGCCCTGAAAAGTTCCATCA 59.892 45.455 0.00 0.00 0.00 3.07
649 650 2.489722 GAGCCCTGAAAAGTTCCATCAC 59.510 50.000 0.00 0.00 0.00 3.06
650 651 1.200020 GCCCTGAAAAGTTCCATCACG 59.800 52.381 0.00 0.00 0.00 4.35
651 652 2.778299 CCCTGAAAAGTTCCATCACGA 58.222 47.619 0.00 0.00 0.00 4.35
652 653 2.744202 CCCTGAAAAGTTCCATCACGAG 59.256 50.000 0.00 0.00 0.00 4.18
653 654 2.160417 CCTGAAAAGTTCCATCACGAGC 59.840 50.000 0.00 0.00 0.00 5.03
654 655 3.070018 CTGAAAAGTTCCATCACGAGCT 58.930 45.455 0.00 0.00 0.00 4.09
655 656 3.067106 TGAAAAGTTCCATCACGAGCTC 58.933 45.455 2.73 2.73 0.00 4.09
656 657 1.714794 AAAGTTCCATCACGAGCTCG 58.285 50.000 33.45 33.45 46.33 5.03
657 658 0.888619 AAGTTCCATCACGAGCTCGA 59.111 50.000 40.58 21.52 43.02 4.04
658 659 0.171455 AGTTCCATCACGAGCTCGAC 59.829 55.000 40.58 25.59 43.02 4.20
659 660 0.109272 GTTCCATCACGAGCTCGACA 60.109 55.000 40.58 25.94 43.02 4.35
660 661 0.109272 TTCCATCACGAGCTCGACAC 60.109 55.000 40.58 0.18 43.02 3.67
661 662 1.212751 CCATCACGAGCTCGACACA 59.787 57.895 40.58 21.01 43.02 3.72
662 663 1.073216 CCATCACGAGCTCGACACAC 61.073 60.000 40.58 0.00 43.02 3.82
663 664 0.387239 CATCACGAGCTCGACACACA 60.387 55.000 40.58 17.59 43.02 3.72
664 665 0.387367 ATCACGAGCTCGACACACAC 60.387 55.000 40.58 0.00 43.02 3.82
665 666 1.299089 CACGAGCTCGACACACACA 60.299 57.895 40.58 0.00 43.02 3.72
666 667 0.869880 CACGAGCTCGACACACACAA 60.870 55.000 40.58 0.00 43.02 3.33
667 668 0.595053 ACGAGCTCGACACACACAAG 60.595 55.000 40.58 9.20 43.02 3.16
668 669 1.856012 GAGCTCGACACACACAAGC 59.144 57.895 0.00 0.00 0.00 4.01
669 670 0.598680 GAGCTCGACACACACAAGCT 60.599 55.000 0.00 0.00 45.54 3.74
670 671 0.877649 AGCTCGACACACACAAGCTG 60.878 55.000 0.00 0.00 41.54 4.24
671 672 1.566563 CTCGACACACACAAGCTGC 59.433 57.895 0.00 0.00 0.00 5.25
672 673 1.835483 CTCGACACACACAAGCTGCC 61.835 60.000 0.00 0.00 0.00 4.85
673 674 2.633657 GACACACACAAGCTGCCG 59.366 61.111 0.00 0.00 0.00 5.69
674 675 2.124736 ACACACACAAGCTGCCGT 60.125 55.556 0.00 0.00 0.00 5.68
675 676 0.878523 GACACACACAAGCTGCCGTA 60.879 55.000 0.00 0.00 0.00 4.02
676 677 1.157870 ACACACACAAGCTGCCGTAC 61.158 55.000 0.00 0.00 0.00 3.67
677 678 1.145156 ACACACAAGCTGCCGTACA 59.855 52.632 0.00 0.00 0.00 2.90
678 679 1.157870 ACACACAAGCTGCCGTACAC 61.158 55.000 0.00 0.00 0.00 2.90
679 680 1.145156 ACACAAGCTGCCGTACACA 59.855 52.632 0.00 0.00 0.00 3.72
680 681 1.157870 ACACAAGCTGCCGTACACAC 61.158 55.000 0.00 0.00 0.00 3.82
681 682 1.145156 ACAAGCTGCCGTACACACA 59.855 52.632 0.00 0.00 0.00 3.72
682 683 1.157870 ACAAGCTGCCGTACACACAC 61.158 55.000 0.00 0.00 0.00 3.82
683 684 1.954146 AAGCTGCCGTACACACACG 60.954 57.895 0.00 0.00 41.59 4.49
684 685 2.638330 AAGCTGCCGTACACACACGT 62.638 55.000 0.00 0.00 40.31 4.49
685 686 2.241880 GCTGCCGTACACACACGTT 61.242 57.895 0.00 0.00 40.31 3.99
734 735 9.512435 TCTACACTAATTTACACGAGAAATAGC 57.488 33.333 0.00 0.00 0.00 2.97
753 1556 2.828549 ATGGCGGCGGGAATGAAC 60.829 61.111 9.78 0.00 0.00 3.18
758 1561 0.103572 GCGGCGGGAATGAACTACTA 59.896 55.000 9.78 0.00 0.00 1.82
760 1563 1.537562 CGGCGGGAATGAACTACTACC 60.538 57.143 0.00 0.00 0.00 3.18
769 1572 1.278127 TGAACTACTACCTGCAAGCCC 59.722 52.381 0.00 0.00 0.00 5.19
776 1579 0.034960 TACCTGCAAGCCCGCATAAA 60.035 50.000 0.00 0.00 42.06 1.40
777 1580 1.315257 ACCTGCAAGCCCGCATAAAG 61.315 55.000 0.00 0.00 42.06 1.85
852 1669 1.222936 CCATCTCCTGCAGTCCCAC 59.777 63.158 13.81 0.00 0.00 4.61
853 1670 1.153489 CATCTCCTGCAGTCCCACG 60.153 63.158 13.81 0.00 0.00 4.94
869 1686 3.131396 CCCACGAGAAAAATATCTCCCG 58.869 50.000 0.00 0.00 42.34 5.14
896 1713 1.065854 CACATCCAACCACCTCTCTCC 60.066 57.143 0.00 0.00 0.00 3.71
949 1766 1.063972 CACACAACACAAGCCCACG 59.936 57.895 0.00 0.00 0.00 4.94
950 1767 2.026014 CACAACACAAGCCCACGC 59.974 61.111 0.00 0.00 0.00 5.34
951 1768 3.216292 ACAACACAAGCCCACGCC 61.216 61.111 0.00 0.00 34.57 5.68
952 1769 3.977244 CAACACAAGCCCACGCCC 61.977 66.667 0.00 0.00 34.57 6.13
953 1770 4.514585 AACACAAGCCCACGCCCA 62.515 61.111 0.00 0.00 34.57 5.36
990 1807 1.974875 CCCAAAACCCTACCACGCC 60.975 63.158 0.00 0.00 0.00 5.68
991 1808 1.074248 CCAAAACCCTACCACGCCT 59.926 57.895 0.00 0.00 0.00 5.52
992 1809 0.958876 CCAAAACCCTACCACGCCTC 60.959 60.000 0.00 0.00 0.00 4.70
993 1810 0.958876 CAAAACCCTACCACGCCTCC 60.959 60.000 0.00 0.00 0.00 4.30
994 1811 2.459202 AAAACCCTACCACGCCTCCG 62.459 60.000 0.00 0.00 41.14 4.63
1091 1923 3.517100 CTCTTCCTCCAGAACCTGATGAA 59.483 47.826 0.00 0.00 32.44 2.57
1215 2047 1.343147 CGAGTCCTACGACGACGAC 59.657 63.158 15.32 1.24 44.28 4.34
1218 2050 1.057976 GTCCTACGACGACGACGAC 59.942 63.158 25.15 9.77 42.66 4.34
1695 2527 3.712881 GTGGTGCGCAGGAACGTC 61.713 66.667 12.22 0.00 39.81 4.34
1756 2589 4.641645 CAGTTCCACCGGGCTGCA 62.642 66.667 6.32 0.00 0.00 4.41
1956 2789 7.061094 GCAAATATGTGCTGTTTCTTGAGTTAC 59.939 37.037 10.84 0.00 41.51 2.50
2116 2959 7.029563 CCTGTAAGTGCATTGGAACTTTTATC 58.970 38.462 0.00 0.00 40.10 1.75
2122 2965 8.353423 AGTGCATTGGAACTTTTATCACTTAT 57.647 30.769 0.00 0.00 22.78 1.73
2144 2987 4.633175 TGTTAGCGGTGAAATTGTAGTGA 58.367 39.130 0.00 0.00 0.00 3.41
2172 3016 3.822940 CCACCGGGTAATTATGCCTAAA 58.177 45.455 6.32 0.00 0.00 1.85
2183 3027 7.388224 GGTAATTATGCCTAAACCTAGAAGAGC 59.612 40.741 0.00 0.00 0.00 4.09
2211 3055 7.286775 AGGAGCACCTTTAATCTACTCTCTTAG 59.713 40.741 0.00 0.00 45.36 2.18
2213 3059 8.776061 AGCACCTTTAATCTACTCTCTTAGAT 57.224 34.615 0.00 0.00 40.00 1.98
2319 3165 5.516339 CACTTTGGTGTGATTCAAACTGAAC 59.484 40.000 6.92 0.00 37.65 3.18
2413 3266 1.212935 CCCCTGATTCGACCTTTGGAT 59.787 52.381 0.00 0.00 0.00 3.41
2516 3369 7.381323 CCTGAATAAGAATAATGGATTTGGGC 58.619 38.462 0.00 0.00 0.00 5.36
2539 3392 4.932146 TGCATTTCATCATCTCATTGCTG 58.068 39.130 0.00 0.00 0.00 4.41
2556 3409 4.604843 TGCTGCTTCGTTTCATTATCAG 57.395 40.909 0.00 0.00 0.00 2.90
2600 3453 1.053264 TGCATTGTTGGTTGGCCCTT 61.053 50.000 0.00 0.00 0.00 3.95
2671 3524 6.371809 TTGTGTTGGTCTTACTGAATTGTC 57.628 37.500 0.00 0.00 0.00 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 9.364989 GGAAATTTCATGATTCGTTTCCAATTA 57.635 29.630 23.09 0.00 42.44 1.40
32 33 7.877097 TGGAAATTTCATGATTCGTTTCCAATT 59.123 29.630 25.79 12.95 46.70 2.32
33 34 7.385267 TGGAAATTTCATGATTCGTTTCCAAT 58.615 30.769 25.79 8.86 46.70 3.16
34 35 6.753180 TGGAAATTTCATGATTCGTTTCCAA 58.247 32.000 25.79 16.76 46.70 3.53
36 37 6.644592 TGTTGGAAATTTCATGATTCGTTTCC 59.355 34.615 19.49 22.16 42.93 3.13
37 38 7.636259 TGTTGGAAATTTCATGATTCGTTTC 57.364 32.000 19.49 5.33 0.00 2.78
38 39 7.710475 ACTTGTTGGAAATTTCATGATTCGTTT 59.290 29.630 19.49 0.00 0.00 3.60
39 40 7.209475 ACTTGTTGGAAATTTCATGATTCGTT 58.791 30.769 19.49 0.00 0.00 3.85
40 41 6.748132 ACTTGTTGGAAATTTCATGATTCGT 58.252 32.000 19.49 5.62 0.00 3.85
41 42 7.381948 TGAACTTGTTGGAAATTTCATGATTCG 59.618 33.333 19.49 5.05 0.00 3.34
42 43 8.592105 TGAACTTGTTGGAAATTTCATGATTC 57.408 30.769 19.49 12.54 0.00 2.52
47 48 9.563748 AATTCATGAACTTGTTGGAAATTTCAT 57.436 25.926 19.49 0.00 38.96 2.57
48 49 8.961294 AATTCATGAACTTGTTGGAAATTTCA 57.039 26.923 19.49 3.64 34.47 2.69
49 50 9.654417 CAAATTCATGAACTTGTTGGAAATTTC 57.346 29.630 19.02 9.83 0.00 2.17
50 51 9.393512 TCAAATTCATGAACTTGTTGGAAATTT 57.606 25.926 24.37 8.92 30.45 1.82
51 52 8.961294 TCAAATTCATGAACTTGTTGGAAATT 57.039 26.923 24.37 3.55 30.45 1.82
52 53 8.423349 TCTCAAATTCATGAACTTGTTGGAAAT 58.577 29.630 24.37 0.00 30.45 2.17
53 54 7.780064 TCTCAAATTCATGAACTTGTTGGAAA 58.220 30.769 24.37 7.66 30.45 3.13
54 55 7.345422 TCTCAAATTCATGAACTTGTTGGAA 57.655 32.000 24.37 8.27 30.45 3.53
55 56 6.957920 TCTCAAATTCATGAACTTGTTGGA 57.042 33.333 24.37 18.37 30.45 3.53
56 57 8.422973 TTTTCTCAAATTCATGAACTTGTTGG 57.577 30.769 24.37 16.85 30.45 3.77
82 83 9.757227 TGAAATTTTATTCAAATCCACGAGTTT 57.243 25.926 0.00 0.00 36.42 2.66
83 84 9.191995 GTGAAATTTTATTCAAATCCACGAGTT 57.808 29.630 0.00 0.00 40.76 3.01
84 85 8.356657 TGTGAAATTTTATTCAAATCCACGAGT 58.643 29.630 0.00 0.00 40.76 4.18
85 86 8.741101 TGTGAAATTTTATTCAAATCCACGAG 57.259 30.769 0.00 0.00 40.76 4.18
86 87 9.534565 TTTGTGAAATTTTATTCAAATCCACGA 57.465 25.926 0.00 0.00 40.76 4.35
146 147 9.601971 GCTTTACATGTGTTTCTAAATTACGAA 57.398 29.630 9.11 0.00 0.00 3.85
147 148 8.775527 TGCTTTACATGTGTTTCTAAATTACGA 58.224 29.630 9.11 0.00 0.00 3.43
148 149 8.942669 TGCTTTACATGTGTTTCTAAATTACG 57.057 30.769 9.11 0.00 0.00 3.18
153 154 9.646427 ACTTTTTGCTTTACATGTGTTTCTAAA 57.354 25.926 9.11 0.00 0.00 1.85
154 155 9.646427 AACTTTTTGCTTTACATGTGTTTCTAA 57.354 25.926 9.11 0.00 0.00 2.10
155 156 9.081997 CAACTTTTTGCTTTACATGTGTTTCTA 57.918 29.630 9.11 0.00 0.00 2.10
156 157 7.816995 TCAACTTTTTGCTTTACATGTGTTTCT 59.183 29.630 9.11 0.00 32.17 2.52
157 158 7.897800 GTCAACTTTTTGCTTTACATGTGTTTC 59.102 33.333 9.11 0.00 32.17 2.78
158 159 7.411372 CGTCAACTTTTTGCTTTACATGTGTTT 60.411 33.333 9.11 0.00 32.17 2.83
159 160 6.034470 CGTCAACTTTTTGCTTTACATGTGTT 59.966 34.615 9.11 0.00 32.17 3.32
160 161 5.514914 CGTCAACTTTTTGCTTTACATGTGT 59.485 36.000 9.11 0.00 32.17 3.72
161 162 5.741510 TCGTCAACTTTTTGCTTTACATGTG 59.258 36.000 9.11 0.00 32.17 3.21
162 163 5.885881 TCGTCAACTTTTTGCTTTACATGT 58.114 33.333 2.69 2.69 32.17 3.21
163 164 6.804534 TTCGTCAACTTTTTGCTTTACATG 57.195 33.333 0.00 0.00 32.17 3.21
164 165 8.327429 CAAATTCGTCAACTTTTTGCTTTACAT 58.673 29.630 0.00 0.00 32.17 2.29
165 166 7.542477 TCAAATTCGTCAACTTTTTGCTTTACA 59.458 29.630 0.00 0.00 32.17 2.41
166 167 7.890763 TCAAATTCGTCAACTTTTTGCTTTAC 58.109 30.769 0.00 0.00 32.17 2.01
167 168 8.467402 TTCAAATTCGTCAACTTTTTGCTTTA 57.533 26.923 0.00 0.00 32.17 1.85
168 169 6.959671 TCAAATTCGTCAACTTTTTGCTTT 57.040 29.167 0.00 0.00 32.17 3.51
169 170 6.959671 TTCAAATTCGTCAACTTTTTGCTT 57.040 29.167 0.00 0.00 32.17 3.91
170 171 6.959671 TTTCAAATTCGTCAACTTTTTGCT 57.040 29.167 0.00 0.00 32.17 3.91
171 172 6.682441 CCTTTTCAAATTCGTCAACTTTTTGC 59.318 34.615 0.00 0.00 32.17 3.68
172 173 7.738345 ACCTTTTCAAATTCGTCAACTTTTTG 58.262 30.769 0.00 0.00 0.00 2.44
173 174 7.899178 ACCTTTTCAAATTCGTCAACTTTTT 57.101 28.000 0.00 0.00 0.00 1.94
174 175 7.219344 CGTACCTTTTCAAATTCGTCAACTTTT 59.781 33.333 0.00 0.00 0.00 2.27
175 176 6.689669 CGTACCTTTTCAAATTCGTCAACTTT 59.310 34.615 0.00 0.00 0.00 2.66
176 177 6.196571 CGTACCTTTTCAAATTCGTCAACTT 58.803 36.000 0.00 0.00 0.00 2.66
177 178 5.744490 CGTACCTTTTCAAATTCGTCAACT 58.256 37.500 0.00 0.00 0.00 3.16
178 179 4.377738 GCGTACCTTTTCAAATTCGTCAAC 59.622 41.667 0.00 0.00 0.00 3.18
179 180 4.035324 TGCGTACCTTTTCAAATTCGTCAA 59.965 37.500 0.00 0.00 0.00 3.18
180 181 3.560481 TGCGTACCTTTTCAAATTCGTCA 59.440 39.130 0.00 0.00 0.00 4.35
181 182 4.136517 TGCGTACCTTTTCAAATTCGTC 57.863 40.909 0.00 0.00 0.00 4.20
182 183 4.555348 TTGCGTACCTTTTCAAATTCGT 57.445 36.364 0.00 0.00 0.00 3.85
183 184 4.973663 AGTTTGCGTACCTTTTCAAATTCG 59.026 37.500 0.00 0.00 32.07 3.34
184 185 6.474102 TCAAGTTTGCGTACCTTTTCAAATTC 59.526 34.615 0.00 0.00 32.07 2.17
185 186 6.334202 TCAAGTTTGCGTACCTTTTCAAATT 58.666 32.000 0.00 0.00 32.07 1.82
186 187 5.897050 TCAAGTTTGCGTACCTTTTCAAAT 58.103 33.333 0.00 0.00 32.07 2.32
187 188 5.312120 TCAAGTTTGCGTACCTTTTCAAA 57.688 34.783 0.00 0.00 0.00 2.69
188 189 4.966965 TCAAGTTTGCGTACCTTTTCAA 57.033 36.364 0.00 0.00 0.00 2.69
189 190 5.508200 AATCAAGTTTGCGTACCTTTTCA 57.492 34.783 0.00 0.00 0.00 2.69
190 191 6.822073 AAAATCAAGTTTGCGTACCTTTTC 57.178 33.333 0.00 0.00 0.00 2.29
191 192 7.760340 TGTAAAAATCAAGTTTGCGTACCTTTT 59.240 29.630 0.00 0.00 0.00 2.27
192 193 7.259161 TGTAAAAATCAAGTTTGCGTACCTTT 58.741 30.769 0.00 0.00 0.00 3.11
193 194 6.797454 TGTAAAAATCAAGTTTGCGTACCTT 58.203 32.000 0.00 0.00 0.00 3.50
194 195 6.261381 TCTGTAAAAATCAAGTTTGCGTACCT 59.739 34.615 0.00 0.00 0.00 3.08
195 196 6.432107 TCTGTAAAAATCAAGTTTGCGTACC 58.568 36.000 0.00 0.00 0.00 3.34
196 197 8.502161 AATCTGTAAAAATCAAGTTTGCGTAC 57.498 30.769 0.00 0.00 0.00 3.67
197 198 8.963130 CAAATCTGTAAAAATCAAGTTTGCGTA 58.037 29.630 0.00 0.00 0.00 4.42
198 199 7.704472 TCAAATCTGTAAAAATCAAGTTTGCGT 59.296 29.630 0.00 0.00 0.00 5.24
199 200 8.060020 TCAAATCTGTAAAAATCAAGTTTGCG 57.940 30.769 0.00 0.00 0.00 4.85
200 201 9.248291 TCTCAAATCTGTAAAAATCAAGTTTGC 57.752 29.630 0.00 0.00 0.00 3.68
291 292 9.602568 ACACGGGTTTATTTCTTTTTGTTTTAT 57.397 25.926 0.00 0.00 0.00 1.40
292 293 8.999220 ACACGGGTTTATTTCTTTTTGTTTTA 57.001 26.923 0.00 0.00 0.00 1.52
293 294 7.908827 ACACGGGTTTATTTCTTTTTGTTTT 57.091 28.000 0.00 0.00 0.00 2.43
294 295 8.999220 TTACACGGGTTTATTTCTTTTTGTTT 57.001 26.923 0.00 0.00 0.00 2.83
295 296 8.999220 TTTACACGGGTTTATTTCTTTTTGTT 57.001 26.923 0.00 0.00 0.00 2.83
296 297 8.999220 TTTTACACGGGTTTATTTCTTTTTGT 57.001 26.923 0.00 0.00 0.00 2.83
298 299 9.263538 GGATTTTACACGGGTTTATTTCTTTTT 57.736 29.630 0.00 0.00 0.00 1.94
299 300 8.422566 TGGATTTTACACGGGTTTATTTCTTTT 58.577 29.630 0.00 0.00 0.00 2.27
300 301 7.953752 TGGATTTTACACGGGTTTATTTCTTT 58.046 30.769 0.00 0.00 0.00 2.52
301 302 7.309560 CCTGGATTTTACACGGGTTTATTTCTT 60.310 37.037 0.00 0.00 0.00 2.52
302 303 6.152154 CCTGGATTTTACACGGGTTTATTTCT 59.848 38.462 0.00 0.00 0.00 2.52
303 304 6.071784 ACCTGGATTTTACACGGGTTTATTTC 60.072 38.462 0.00 0.00 40.91 2.17
304 305 5.776208 ACCTGGATTTTACACGGGTTTATTT 59.224 36.000 0.00 0.00 40.91 1.40
305 306 5.326900 ACCTGGATTTTACACGGGTTTATT 58.673 37.500 0.00 0.00 40.91 1.40
306 307 4.925836 ACCTGGATTTTACACGGGTTTAT 58.074 39.130 0.00 0.00 40.91 1.40
307 308 4.325972 GACCTGGATTTTACACGGGTTTA 58.674 43.478 0.00 0.00 43.65 2.01
308 309 3.151554 GACCTGGATTTTACACGGGTTT 58.848 45.455 0.00 0.00 43.65 3.27
309 310 2.786777 GACCTGGATTTTACACGGGTT 58.213 47.619 0.00 0.00 43.65 4.11
310 311 1.338389 CGACCTGGATTTTACACGGGT 60.338 52.381 0.00 0.00 46.16 5.28
311 312 1.365699 CGACCTGGATTTTACACGGG 58.634 55.000 0.00 0.00 36.70 5.28
312 313 1.066716 TCCGACCTGGATTTTACACGG 60.067 52.381 0.00 0.00 43.74 4.94
313 314 2.373540 TCCGACCTGGATTTTACACG 57.626 50.000 0.00 0.00 43.74 4.49
322 323 2.314071 TAGGTTTCTTCCGACCTGGA 57.686 50.000 0.00 0.00 45.57 3.86
323 324 3.007614 TCTTTAGGTTTCTTCCGACCTGG 59.992 47.826 5.34 0.00 45.57 4.45
324 325 4.267349 TCTTTAGGTTTCTTCCGACCTG 57.733 45.455 5.34 0.00 45.57 4.00
326 327 6.183360 TGTTTTTCTTTAGGTTTCTTCCGACC 60.183 38.462 0.00 0.00 36.15 4.79
327 328 6.690098 GTGTTTTTCTTTAGGTTTCTTCCGAC 59.310 38.462 0.00 0.00 0.00 4.79
328 329 6.183360 GGTGTTTTTCTTTAGGTTTCTTCCGA 60.183 38.462 0.00 0.00 0.00 4.55
329 330 5.975344 GGTGTTTTTCTTTAGGTTTCTTCCG 59.025 40.000 0.00 0.00 0.00 4.30
330 331 6.278363 GGGTGTTTTTCTTTAGGTTTCTTCC 58.722 40.000 0.00 0.00 0.00 3.46
331 332 5.975344 CGGGTGTTTTTCTTTAGGTTTCTTC 59.025 40.000 0.00 0.00 0.00 2.87
332 333 5.163488 CCGGGTGTTTTTCTTTAGGTTTCTT 60.163 40.000 0.00 0.00 0.00 2.52
333 334 4.340097 CCGGGTGTTTTTCTTTAGGTTTCT 59.660 41.667 0.00 0.00 0.00 2.52
334 335 4.338964 TCCGGGTGTTTTTCTTTAGGTTTC 59.661 41.667 0.00 0.00 0.00 2.78
335 336 4.279982 TCCGGGTGTTTTTCTTTAGGTTT 58.720 39.130 0.00 0.00 0.00 3.27
336 337 3.900971 TCCGGGTGTTTTTCTTTAGGTT 58.099 40.909 0.00 0.00 0.00 3.50
337 338 3.581265 TCCGGGTGTTTTTCTTTAGGT 57.419 42.857 0.00 0.00 0.00 3.08
338 339 4.922471 TTTCCGGGTGTTTTTCTTTAGG 57.078 40.909 0.00 0.00 0.00 2.69
339 340 5.521010 GGTTTTTCCGGGTGTTTTTCTTTAG 59.479 40.000 0.00 0.00 0.00 1.85
340 341 5.417811 GGTTTTTCCGGGTGTTTTTCTTTA 58.582 37.500 0.00 0.00 0.00 1.85
341 342 4.255301 GGTTTTTCCGGGTGTTTTTCTTT 58.745 39.130 0.00 0.00 0.00 2.52
342 343 3.864243 GGTTTTTCCGGGTGTTTTTCTT 58.136 40.909 0.00 0.00 0.00 2.52
343 344 3.530265 GGTTTTTCCGGGTGTTTTTCT 57.470 42.857 0.00 0.00 0.00 2.52
355 356 2.477357 GCTATTTCTCGCCGGTTTTTCC 60.477 50.000 1.90 0.00 0.00 3.13
356 357 2.477357 GGCTATTTCTCGCCGGTTTTTC 60.477 50.000 1.90 0.00 36.45 2.29
357 358 1.471287 GGCTATTTCTCGCCGGTTTTT 59.529 47.619 1.90 0.00 36.45 1.94
358 359 1.092348 GGCTATTTCTCGCCGGTTTT 58.908 50.000 1.90 0.00 36.45 2.43
359 360 2.776659 GGCTATTTCTCGCCGGTTT 58.223 52.632 1.90 0.00 36.45 3.27
360 361 4.534401 GGCTATTTCTCGCCGGTT 57.466 55.556 1.90 0.00 36.45 4.44
364 365 0.667792 CGCTAGGGCTATTTCTCGCC 60.668 60.000 0.00 0.00 45.55 5.54
365 366 0.032267 ACGCTAGGGCTATTTCTCGC 59.968 55.000 6.73 0.00 36.09 5.03
366 367 1.337071 TCACGCTAGGGCTATTTCTCG 59.663 52.381 6.73 0.00 36.09 4.04
367 368 3.669251 ATCACGCTAGGGCTATTTCTC 57.331 47.619 6.73 0.00 36.09 2.87
368 369 4.423625 AAATCACGCTAGGGCTATTTCT 57.576 40.909 6.73 0.00 36.09 2.52
369 370 5.500645 AAAAATCACGCTAGGGCTATTTC 57.499 39.130 15.76 0.00 36.09 2.17
388 389 6.799926 AGCAAGCTTTTCTCAAAACAAAAA 57.200 29.167 0.00 0.00 0.00 1.94
389 390 7.465781 GCATAGCAAGCTTTTCTCAAAACAAAA 60.466 33.333 0.00 0.00 0.00 2.44
390 391 6.018832 GCATAGCAAGCTTTTCTCAAAACAAA 60.019 34.615 0.00 0.00 0.00 2.83
391 392 5.463061 GCATAGCAAGCTTTTCTCAAAACAA 59.537 36.000 0.00 0.00 0.00 2.83
392 393 4.984161 GCATAGCAAGCTTTTCTCAAAACA 59.016 37.500 0.00 0.00 0.00 2.83
393 394 4.386954 GGCATAGCAAGCTTTTCTCAAAAC 59.613 41.667 0.00 0.00 0.00 2.43
394 395 4.281688 AGGCATAGCAAGCTTTTCTCAAAA 59.718 37.500 0.00 0.00 0.00 2.44
395 396 3.828451 AGGCATAGCAAGCTTTTCTCAAA 59.172 39.130 0.00 0.00 0.00 2.69
396 397 3.424703 AGGCATAGCAAGCTTTTCTCAA 58.575 40.909 0.00 0.00 0.00 3.02
397 398 3.077484 AGGCATAGCAAGCTTTTCTCA 57.923 42.857 0.00 0.00 0.00 3.27
398 399 4.446994 AAAGGCATAGCAAGCTTTTCTC 57.553 40.909 0.00 0.00 36.72 2.87
399 400 6.153340 TCAATAAAGGCATAGCAAGCTTTTCT 59.847 34.615 0.00 0.00 39.95 2.52
400 401 6.332630 TCAATAAAGGCATAGCAAGCTTTTC 58.667 36.000 0.00 0.00 39.95 2.29
401 402 6.284891 TCAATAAAGGCATAGCAAGCTTTT 57.715 33.333 0.00 9.37 42.72 2.27
402 403 5.920193 TCAATAAAGGCATAGCAAGCTTT 57.080 34.783 0.00 0.00 32.25 3.51
403 404 6.475596 AATCAATAAAGGCATAGCAAGCTT 57.524 33.333 0.00 0.00 0.00 3.74
404 405 6.294397 GCTAATCAATAAAGGCATAGCAAGCT 60.294 38.462 0.00 0.00 35.53 3.74
405 406 5.860716 GCTAATCAATAAAGGCATAGCAAGC 59.139 40.000 0.00 0.00 35.53 4.01
406 407 7.211966 AGCTAATCAATAAAGGCATAGCAAG 57.788 36.000 0.00 0.00 37.37 4.01
407 408 8.690203 TTAGCTAATCAATAAAGGCATAGCAA 57.310 30.769 0.86 0.00 37.37 3.91
408 409 8.690203 TTTAGCTAATCAATAAAGGCATAGCA 57.310 30.769 7.08 0.00 37.37 3.49
412 413 9.971922 GACATTTTAGCTAATCAATAAAGGCAT 57.028 29.630 7.08 0.00 0.00 4.40
413 414 9.189156 AGACATTTTAGCTAATCAATAAAGGCA 57.811 29.630 7.08 0.00 0.00 4.75
439 440 9.913310 TCACATGACCCAATTGTAATTTCTATA 57.087 29.630 0.00 0.00 0.00 1.31
440 441 8.821686 TCACATGACCCAATTGTAATTTCTAT 57.178 30.769 0.00 0.00 0.00 1.98
441 442 8.106462 TCTCACATGACCCAATTGTAATTTCTA 58.894 33.333 0.00 0.00 0.00 2.10
442 443 6.947733 TCTCACATGACCCAATTGTAATTTCT 59.052 34.615 0.00 0.00 0.00 2.52
443 444 7.156876 TCTCACATGACCCAATTGTAATTTC 57.843 36.000 0.00 0.00 0.00 2.17
444 445 7.549839 CATCTCACATGACCCAATTGTAATTT 58.450 34.615 0.00 0.00 0.00 1.82
445 446 6.406177 GCATCTCACATGACCCAATTGTAATT 60.406 38.462 0.00 0.00 0.00 1.40
446 447 5.068198 GCATCTCACATGACCCAATTGTAAT 59.932 40.000 0.00 0.00 0.00 1.89
447 448 4.398988 GCATCTCACATGACCCAATTGTAA 59.601 41.667 0.00 0.00 0.00 2.41
448 449 3.947196 GCATCTCACATGACCCAATTGTA 59.053 43.478 0.00 0.00 0.00 2.41
449 450 2.756760 GCATCTCACATGACCCAATTGT 59.243 45.455 0.00 0.00 0.00 2.71
450 451 2.100252 GGCATCTCACATGACCCAATTG 59.900 50.000 0.00 0.00 0.00 2.32
451 452 2.381911 GGCATCTCACATGACCCAATT 58.618 47.619 0.00 0.00 0.00 2.32
452 453 1.410648 GGGCATCTCACATGACCCAAT 60.411 52.381 0.00 0.00 41.39 3.16
453 454 0.034186 GGGCATCTCACATGACCCAA 60.034 55.000 0.00 0.00 41.39 4.12
454 455 1.206811 TGGGCATCTCACATGACCCA 61.207 55.000 0.00 8.05 46.70 4.51
455 456 0.034186 TTGGGCATCTCACATGACCC 60.034 55.000 0.00 5.75 46.70 4.46
457 458 1.098050 GGTTGGGCATCTCACATGAC 58.902 55.000 0.00 0.00 0.00 3.06
458 459 0.697658 TGGTTGGGCATCTCACATGA 59.302 50.000 0.00 0.00 0.00 3.07
459 460 0.813184 GTGGTTGGGCATCTCACATG 59.187 55.000 0.00 0.00 0.00 3.21
460 461 0.405198 TGTGGTTGGGCATCTCACAT 59.595 50.000 0.00 0.00 34.01 3.21
461 462 0.250858 CTGTGGTTGGGCATCTCACA 60.251 55.000 0.00 0.00 36.94 3.58
462 463 0.036732 TCTGTGGTTGGGCATCTCAC 59.963 55.000 0.00 0.00 0.00 3.51
463 464 0.994247 ATCTGTGGTTGGGCATCTCA 59.006 50.000 0.00 0.00 0.00 3.27
464 465 1.386533 CATCTGTGGTTGGGCATCTC 58.613 55.000 0.00 0.00 0.00 2.75
465 466 0.682209 GCATCTGTGGTTGGGCATCT 60.682 55.000 0.00 0.00 0.00 2.90
466 467 1.669999 GGCATCTGTGGTTGGGCATC 61.670 60.000 0.00 0.00 0.00 3.91
467 468 1.683365 GGCATCTGTGGTTGGGCAT 60.683 57.895 0.00 0.00 0.00 4.40
468 469 2.283101 GGCATCTGTGGTTGGGCA 60.283 61.111 0.00 0.00 0.00 5.36
469 470 2.036256 AGGCATCTGTGGTTGGGC 59.964 61.111 0.00 0.00 0.00 5.36
470 471 1.379044 GGAGGCATCTGTGGTTGGG 60.379 63.158 0.00 0.00 0.00 4.12
471 472 1.379044 GGGAGGCATCTGTGGTTGG 60.379 63.158 0.00 0.00 0.00 3.77
472 473 0.911769 TAGGGAGGCATCTGTGGTTG 59.088 55.000 0.00 0.00 0.00 3.77
473 474 1.668826 TTAGGGAGGCATCTGTGGTT 58.331 50.000 0.00 0.00 0.00 3.67
474 475 1.561542 CTTTAGGGAGGCATCTGTGGT 59.438 52.381 0.00 0.00 0.00 4.16
475 476 1.133976 CCTTTAGGGAGGCATCTGTGG 60.134 57.143 0.00 0.00 37.23 4.17
476 477 2.338577 CCTTTAGGGAGGCATCTGTG 57.661 55.000 0.00 0.00 37.23 3.66
488 489 7.010160 AGAGAGATCTTACATCTCCCTTTAGG 58.990 42.308 7.80 0.00 44.15 2.69
489 490 8.359642 CAAGAGAGATCTTACATCTCCCTTTAG 58.640 40.741 5.82 0.00 39.25 1.85
490 491 7.841729 ACAAGAGAGATCTTACATCTCCCTTTA 59.158 37.037 5.82 0.00 39.25 1.85
491 492 6.671779 ACAAGAGAGATCTTACATCTCCCTTT 59.328 38.462 5.82 0.00 39.25 3.11
492 493 6.098124 CACAAGAGAGATCTTACATCTCCCTT 59.902 42.308 7.80 5.48 41.77 3.95
493 494 5.598005 CACAAGAGAGATCTTACATCTCCCT 59.402 44.000 7.80 0.00 44.15 4.20
494 495 5.221422 CCACAAGAGAGATCTTACATCTCCC 60.221 48.000 7.80 0.00 44.15 4.30
495 496 5.362430 ACCACAAGAGAGATCTTACATCTCC 59.638 44.000 7.80 1.37 44.15 3.71
496 497 6.272318 CACCACAAGAGAGATCTTACATCTC 58.728 44.000 0.00 3.76 43.59 2.75
497 498 5.128499 CCACCACAAGAGAGATCTTACATCT 59.872 44.000 0.00 0.00 0.00 2.90
498 499 5.105146 ACCACCACAAGAGAGATCTTACATC 60.105 44.000 0.00 0.00 0.00 3.06
499 500 4.780021 ACCACCACAAGAGAGATCTTACAT 59.220 41.667 0.00 0.00 0.00 2.29
500 501 4.160329 ACCACCACAAGAGAGATCTTACA 58.840 43.478 0.00 0.00 0.00 2.41
501 502 4.810191 ACCACCACAAGAGAGATCTTAC 57.190 45.455 0.00 0.00 0.00 2.34
502 503 4.710375 GGTACCACCACAAGAGAGATCTTA 59.290 45.833 7.15 0.00 38.42 2.10
503 504 3.515901 GGTACCACCACAAGAGAGATCTT 59.484 47.826 7.15 0.00 38.42 2.40
504 505 3.100671 GGTACCACCACAAGAGAGATCT 58.899 50.000 7.15 0.00 38.42 2.75
505 506 2.832129 TGGTACCACCACAAGAGAGATC 59.168 50.000 11.60 0.00 44.79 2.75
506 507 2.902608 TGGTACCACCACAAGAGAGAT 58.097 47.619 11.60 0.00 44.79 2.75
507 508 2.391926 TGGTACCACCACAAGAGAGA 57.608 50.000 11.60 0.00 44.79 3.10
518 519 4.139038 ACATTGTAAACAGGTGGTACCAC 58.861 43.478 33.15 33.15 41.95 4.16
519 520 4.440826 ACATTGTAAACAGGTGGTACCA 57.559 40.909 11.60 11.60 41.95 3.25
520 521 6.711645 TCTTTACATTGTAAACAGGTGGTACC 59.288 38.462 16.17 4.43 38.99 3.34
521 522 7.658575 TCTCTTTACATTGTAAACAGGTGGTAC 59.341 37.037 18.58 0.00 0.00 3.34
522 523 7.737869 TCTCTTTACATTGTAAACAGGTGGTA 58.262 34.615 18.58 3.17 0.00 3.25
523 524 6.597562 TCTCTTTACATTGTAAACAGGTGGT 58.402 36.000 18.58 0.00 0.00 4.16
524 525 7.687941 ATCTCTTTACATTGTAAACAGGTGG 57.312 36.000 18.58 9.78 0.00 4.61
525 526 9.398170 CAAATCTCTTTACATTGTAAACAGGTG 57.602 33.333 18.58 12.90 0.00 4.00
526 527 9.349713 TCAAATCTCTTTACATTGTAAACAGGT 57.650 29.630 18.58 12.40 0.00 4.00
532 533 9.567776 TCACCTTCAAATCTCTTTACATTGTAA 57.432 29.630 5.14 5.14 0.00 2.41
533 534 9.739276 ATCACCTTCAAATCTCTTTACATTGTA 57.261 29.630 0.00 0.00 0.00 2.41
534 535 8.641498 ATCACCTTCAAATCTCTTTACATTGT 57.359 30.769 0.00 0.00 0.00 2.71
535 536 8.186821 GGATCACCTTCAAATCTCTTTACATTG 58.813 37.037 0.00 0.00 0.00 2.82
536 537 7.890127 TGGATCACCTTCAAATCTCTTTACATT 59.110 33.333 0.00 0.00 37.04 2.71
537 538 7.405292 TGGATCACCTTCAAATCTCTTTACAT 58.595 34.615 0.00 0.00 37.04 2.29
538 539 6.778821 TGGATCACCTTCAAATCTCTTTACA 58.221 36.000 0.00 0.00 37.04 2.41
539 540 7.872113 ATGGATCACCTTCAAATCTCTTTAC 57.128 36.000 0.00 0.00 37.04 2.01
540 541 8.884124 AAATGGATCACCTTCAAATCTCTTTA 57.116 30.769 0.00 0.00 37.04 1.85
541 542 7.452501 TGAAATGGATCACCTTCAAATCTCTTT 59.547 33.333 0.00 0.00 37.04 2.52
542 543 6.950041 TGAAATGGATCACCTTCAAATCTCTT 59.050 34.615 0.00 0.00 37.04 2.85
543 544 6.487828 TGAAATGGATCACCTTCAAATCTCT 58.512 36.000 0.00 0.00 37.04 3.10
544 545 6.764308 TGAAATGGATCACCTTCAAATCTC 57.236 37.500 0.00 0.00 37.04 2.75
545 546 6.950041 TCTTGAAATGGATCACCTTCAAATCT 59.050 34.615 13.21 0.00 38.74 2.40
546 547 7.161773 TCTTGAAATGGATCACCTTCAAATC 57.838 36.000 13.21 0.00 38.74 2.17
547 548 7.618512 AGATCTTGAAATGGATCACCTTCAAAT 59.381 33.333 13.21 10.54 38.74 2.32
548 549 6.950041 AGATCTTGAAATGGATCACCTTCAAA 59.050 34.615 13.21 7.67 38.74 2.69
549 550 6.487828 AGATCTTGAAATGGATCACCTTCAA 58.512 36.000 12.19 12.19 40.32 2.69
550 551 6.070951 AGATCTTGAAATGGATCACCTTCA 57.929 37.500 0.00 0.00 40.32 3.02
551 552 6.679884 GCAAGATCTTGAAATGGATCACCTTC 60.680 42.308 34.43 10.52 42.93 3.46
552 553 5.126707 GCAAGATCTTGAAATGGATCACCTT 59.873 40.000 34.43 0.00 42.93 3.50
553 554 4.643784 GCAAGATCTTGAAATGGATCACCT 59.356 41.667 34.43 0.00 42.93 4.00
554 555 4.497006 CGCAAGATCTTGAAATGGATCACC 60.497 45.833 34.43 13.81 42.93 4.02
555 556 4.095483 ACGCAAGATCTTGAAATGGATCAC 59.905 41.667 34.43 14.27 42.93 3.06
556 557 4.264253 ACGCAAGATCTTGAAATGGATCA 58.736 39.130 34.43 0.00 42.93 2.92
557 558 4.333649 TGACGCAAGATCTTGAAATGGATC 59.666 41.667 34.43 19.80 42.93 3.36
558 559 4.264253 TGACGCAAGATCTTGAAATGGAT 58.736 39.130 34.43 13.30 42.93 3.41
559 560 3.673902 TGACGCAAGATCTTGAAATGGA 58.326 40.909 34.43 12.62 42.93 3.41
560 561 3.181503 CCTGACGCAAGATCTTGAAATGG 60.182 47.826 34.43 23.49 42.93 3.16
561 562 3.181503 CCCTGACGCAAGATCTTGAAATG 60.182 47.826 34.43 22.41 42.93 2.32
562 563 3.012518 CCCTGACGCAAGATCTTGAAAT 58.987 45.455 34.43 20.07 42.93 2.17
563 564 2.038426 TCCCTGACGCAAGATCTTGAAA 59.962 45.455 34.43 16.79 42.93 2.69
564 565 1.623311 TCCCTGACGCAAGATCTTGAA 59.377 47.619 34.43 17.10 42.93 2.69
565 566 1.066858 GTCCCTGACGCAAGATCTTGA 60.067 52.381 34.43 15.63 42.93 3.02
566 567 1.338105 TGTCCCTGACGCAAGATCTTG 60.338 52.381 27.82 27.82 43.14 3.02
567 568 0.976641 TGTCCCTGACGCAAGATCTT 59.023 50.000 0.88 0.88 43.62 2.40
568 569 1.137872 GATGTCCCTGACGCAAGATCT 59.862 52.381 0.00 0.00 43.62 2.75
569 570 1.576356 GATGTCCCTGACGCAAGATC 58.424 55.000 0.00 0.00 43.62 2.75
570 571 0.179000 GGATGTCCCTGACGCAAGAT 59.821 55.000 0.00 0.00 43.62 2.40
571 572 1.596934 GGATGTCCCTGACGCAAGA 59.403 57.895 0.00 0.00 43.62 3.02
582 583 1.383803 AGGCAGAGAGGGGATGTCC 60.384 63.158 0.00 0.00 0.00 4.02
583 584 0.980231 ACAGGCAGAGAGGGGATGTC 60.980 60.000 0.00 0.00 0.00 3.06
584 585 0.980231 GACAGGCAGAGAGGGGATGT 60.980 60.000 0.00 0.00 0.00 3.06
585 586 0.979709 TGACAGGCAGAGAGGGGATG 60.980 60.000 0.00 0.00 0.00 3.51
586 587 0.030297 ATGACAGGCAGAGAGGGGAT 60.030 55.000 0.00 0.00 0.00 3.85
587 588 0.979709 CATGACAGGCAGAGAGGGGA 60.980 60.000 0.00 0.00 0.00 4.81
588 589 1.525923 CATGACAGGCAGAGAGGGG 59.474 63.158 0.00 0.00 0.00 4.79
589 590 1.153208 GCATGACAGGCAGAGAGGG 60.153 63.158 7.31 0.00 0.00 4.30
590 591 1.153208 GGCATGACAGGCAGAGAGG 60.153 63.158 14.83 0.00 0.00 3.69
591 592 0.252479 AAGGCATGACAGGCAGAGAG 59.748 55.000 14.83 0.00 36.37 3.20
592 593 0.035725 CAAGGCATGACAGGCAGAGA 60.036 55.000 14.83 0.00 36.37 3.10
593 594 0.035725 TCAAGGCATGACAGGCAGAG 60.036 55.000 14.83 2.61 36.37 3.35
594 595 0.401356 TTCAAGGCATGACAGGCAGA 59.599 50.000 14.83 5.76 37.92 4.26
595 596 1.134367 CATTCAAGGCATGACAGGCAG 59.866 52.381 14.83 3.34 37.92 4.85
596 597 1.179152 CATTCAAGGCATGACAGGCA 58.821 50.000 14.83 0.00 37.92 4.75
597 598 1.133790 GTCATTCAAGGCATGACAGGC 59.866 52.381 0.00 2.82 46.74 4.85
601 602 1.133790 GCTGGTCATTCAAGGCATGAC 59.866 52.381 0.00 7.04 46.78 3.06
602 603 1.272037 TGCTGGTCATTCAAGGCATGA 60.272 47.619 0.00 0.00 35.85 3.07
603 604 1.179152 TGCTGGTCATTCAAGGCATG 58.821 50.000 0.00 0.00 0.00 4.06
604 605 2.154567 ATGCTGGTCATTCAAGGCAT 57.845 45.000 0.00 0.00 35.89 4.40
605 606 2.239402 TCTATGCTGGTCATTCAAGGCA 59.761 45.455 0.00 0.00 36.63 4.75
606 607 2.923121 TCTATGCTGGTCATTCAAGGC 58.077 47.619 0.00 0.00 36.63 4.35
607 608 4.711399 TCATCTATGCTGGTCATTCAAGG 58.289 43.478 0.00 0.00 36.63 3.61
608 609 4.213694 GCTCATCTATGCTGGTCATTCAAG 59.786 45.833 0.00 0.00 36.63 3.02
609 610 4.132336 GCTCATCTATGCTGGTCATTCAA 58.868 43.478 0.00 0.00 36.63 2.69
610 611 3.495629 GGCTCATCTATGCTGGTCATTCA 60.496 47.826 0.00 0.00 36.63 2.57
611 612 3.072944 GGCTCATCTATGCTGGTCATTC 58.927 50.000 0.00 0.00 36.63 2.67
612 613 2.224719 GGGCTCATCTATGCTGGTCATT 60.225 50.000 0.00 0.00 36.63 2.57
613 614 1.350351 GGGCTCATCTATGCTGGTCAT 59.650 52.381 0.00 0.00 39.17 3.06
614 615 0.761187 GGGCTCATCTATGCTGGTCA 59.239 55.000 0.00 0.00 0.00 4.02
615 616 1.055040 AGGGCTCATCTATGCTGGTC 58.945 55.000 0.00 0.00 0.00 4.02
616 617 0.763652 CAGGGCTCATCTATGCTGGT 59.236 55.000 0.00 0.00 0.00 4.00
617 618 1.054231 TCAGGGCTCATCTATGCTGG 58.946 55.000 0.00 0.00 0.00 4.85
618 619 2.924757 TTCAGGGCTCATCTATGCTG 57.075 50.000 0.00 0.00 0.00 4.41
619 620 3.201708 ACTTTTCAGGGCTCATCTATGCT 59.798 43.478 0.00 0.00 0.00 3.79
620 621 3.549794 ACTTTTCAGGGCTCATCTATGC 58.450 45.455 0.00 0.00 0.00 3.14
621 622 4.578105 GGAACTTTTCAGGGCTCATCTATG 59.422 45.833 0.00 0.00 0.00 2.23
622 623 4.228210 TGGAACTTTTCAGGGCTCATCTAT 59.772 41.667 0.00 0.00 0.00 1.98
623 624 3.587061 TGGAACTTTTCAGGGCTCATCTA 59.413 43.478 0.00 0.00 0.00 1.98
624 625 2.376518 TGGAACTTTTCAGGGCTCATCT 59.623 45.455 0.00 0.00 0.00 2.90
625 626 2.795329 TGGAACTTTTCAGGGCTCATC 58.205 47.619 0.00 0.00 0.00 2.92
626 627 2.978156 TGGAACTTTTCAGGGCTCAT 57.022 45.000 0.00 0.00 0.00 2.90
627 628 2.108075 TGATGGAACTTTTCAGGGCTCA 59.892 45.455 0.00 0.00 0.00 4.26
628 629 2.489722 GTGATGGAACTTTTCAGGGCTC 59.510 50.000 0.00 0.00 0.00 4.70
629 630 2.519013 GTGATGGAACTTTTCAGGGCT 58.481 47.619 0.00 0.00 0.00 5.19
630 631 1.200020 CGTGATGGAACTTTTCAGGGC 59.800 52.381 0.00 0.00 0.00 5.19
631 632 2.744202 CTCGTGATGGAACTTTTCAGGG 59.256 50.000 0.00 0.00 0.00 4.45
632 633 2.160417 GCTCGTGATGGAACTTTTCAGG 59.840 50.000 0.00 0.00 0.00 3.86
633 634 3.070018 AGCTCGTGATGGAACTTTTCAG 58.930 45.455 0.00 0.00 0.00 3.02
634 635 3.067106 GAGCTCGTGATGGAACTTTTCA 58.933 45.455 0.00 0.00 0.00 2.69
635 636 2.092838 CGAGCTCGTGATGGAACTTTTC 59.907 50.000 27.79 0.00 34.11 2.29
636 637 2.069273 CGAGCTCGTGATGGAACTTTT 58.931 47.619 27.79 0.00 34.11 2.27
637 638 1.272490 TCGAGCTCGTGATGGAACTTT 59.728 47.619 33.33 0.00 40.80 2.66
638 639 0.888619 TCGAGCTCGTGATGGAACTT 59.111 50.000 33.33 0.00 40.80 2.66
639 640 0.171455 GTCGAGCTCGTGATGGAACT 59.829 55.000 33.33 0.00 40.80 3.01
640 641 0.109272 TGTCGAGCTCGTGATGGAAC 60.109 55.000 33.33 22.60 40.80 3.62
641 642 0.109272 GTGTCGAGCTCGTGATGGAA 60.109 55.000 33.33 11.70 40.80 3.53
642 643 1.241315 TGTGTCGAGCTCGTGATGGA 61.241 55.000 33.33 12.48 40.80 3.41
643 644 1.073216 GTGTGTCGAGCTCGTGATGG 61.073 60.000 33.33 6.87 40.80 3.51
644 645 0.387239 TGTGTGTCGAGCTCGTGATG 60.387 55.000 33.33 7.64 40.80 3.07
645 646 0.387367 GTGTGTGTCGAGCTCGTGAT 60.387 55.000 33.33 0.00 40.80 3.06
646 647 1.008881 GTGTGTGTCGAGCTCGTGA 60.009 57.895 33.33 19.32 40.80 4.35
647 648 0.869880 TTGTGTGTGTCGAGCTCGTG 60.870 55.000 33.33 9.23 40.80 4.35
648 649 0.595053 CTTGTGTGTGTCGAGCTCGT 60.595 55.000 33.33 0.00 40.80 4.18
649 650 1.880601 GCTTGTGTGTGTCGAGCTCG 61.881 60.000 30.03 30.03 38.76 5.03
650 651 0.598680 AGCTTGTGTGTGTCGAGCTC 60.599 55.000 2.73 2.73 46.03 4.09
651 652 1.443407 AGCTTGTGTGTGTCGAGCT 59.557 52.632 2.30 2.30 44.77 4.09
652 653 1.566563 CAGCTTGTGTGTGTCGAGC 59.433 57.895 0.00 0.00 41.22 5.03
653 654 1.566563 GCAGCTTGTGTGTGTCGAG 59.433 57.895 0.00 0.00 0.00 4.04
654 655 1.887242 GGCAGCTTGTGTGTGTCGA 60.887 57.895 0.00 0.00 0.00 4.20
655 656 2.633657 GGCAGCTTGTGTGTGTCG 59.366 61.111 0.00 0.00 0.00 4.35
656 657 0.878523 TACGGCAGCTTGTGTGTGTC 60.879 55.000 0.00 0.00 0.00 3.67
657 658 1.145156 TACGGCAGCTTGTGTGTGT 59.855 52.632 0.00 0.00 0.00 3.72
658 659 1.157257 TGTACGGCAGCTTGTGTGTG 61.157 55.000 0.00 0.00 0.00 3.82
659 660 1.145156 TGTACGGCAGCTTGTGTGT 59.855 52.632 0.00 0.00 0.00 3.72
660 661 1.157257 TGTGTACGGCAGCTTGTGTG 61.157 55.000 0.00 0.00 0.00 3.82
661 662 1.145156 TGTGTACGGCAGCTTGTGT 59.855 52.632 0.00 0.00 0.00 3.72
662 663 1.157257 TGTGTGTACGGCAGCTTGTG 61.157 55.000 0.00 0.00 0.00 3.33
663 664 1.145156 TGTGTGTACGGCAGCTTGT 59.855 52.632 0.00 0.00 0.00 3.16
664 665 1.569493 GTGTGTGTACGGCAGCTTG 59.431 57.895 0.00 0.00 0.00 4.01
665 666 1.954146 CGTGTGTGTACGGCAGCTT 60.954 57.895 0.00 0.00 40.22 3.74
666 667 2.355837 CGTGTGTGTACGGCAGCT 60.356 61.111 0.00 0.00 40.22 4.24
679 680 6.219381 GAGTATCATCAGACCGGAACGTGT 62.219 50.000 9.46 0.00 44.29 4.49
680 681 3.792459 GAGTATCATCAGACCGGAACGTG 60.792 52.174 9.46 0.00 44.29 4.49
681 682 2.358267 GAGTATCATCAGACCGGAACGT 59.642 50.000 9.46 0.00 44.29 3.99
682 683 3.001395 GAGTATCATCAGACCGGAACG 57.999 52.381 9.46 0.00 45.20 3.95
683 684 2.959707 AGGAGTATCATCAGACCGGAAC 59.040 50.000 9.46 0.99 36.25 3.62
684 685 2.959030 CAGGAGTATCATCAGACCGGAA 59.041 50.000 9.46 0.00 36.25 4.30
685 686 2.587522 CAGGAGTATCATCAGACCGGA 58.412 52.381 9.46 0.00 36.25 5.14
734 735 4.873810 TCATTCCCGCCGCCATGG 62.874 66.667 7.63 7.63 42.50 3.66
753 1556 1.521681 GCGGGCTTGCAGGTAGTAG 60.522 63.158 0.00 0.00 34.15 2.57
790 1594 2.772077 TTTCACTTATGCGGGCTGTA 57.228 45.000 0.00 0.00 0.00 2.74
791 1595 1.904287 TTTTCACTTATGCGGGCTGT 58.096 45.000 0.00 0.00 0.00 4.40
792 1596 2.228822 ACTTTTTCACTTATGCGGGCTG 59.771 45.455 0.00 0.00 0.00 4.85
852 1669 4.038162 AGAGACCGGGAGATATTTTTCTCG 59.962 45.833 6.32 0.00 42.57 4.04
853 1670 5.069251 TGAGAGACCGGGAGATATTTTTCTC 59.931 44.000 6.32 4.75 41.21 2.87
869 1686 1.339151 GGTGGTTGGATGTGAGAGACC 60.339 57.143 0.00 0.00 0.00 3.85
896 1713 0.314302 ATAGGCGAAGGGAACGATCG 59.686 55.000 14.88 14.88 44.09 3.69
1203 2035 1.294798 GTCGTCGTCGTCGTCGTAG 60.295 63.158 18.44 7.25 45.27 3.51
1204 2036 2.763248 GTCGTCGTCGTCGTCGTA 59.237 61.111 18.44 5.88 45.27 3.43
1205 2037 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1206 2038 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1207 2039 2.566765 GTCGTCGTCGTCGTCGTC 60.567 66.667 18.44 11.28 45.27 4.20
1208 2040 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
1215 2047 1.511464 CCCTTCTTCGTCGTCGTCG 60.511 63.158 5.50 5.50 38.33 5.12
1218 2050 1.136984 CTCCCCTTCTTCGTCGTCG 59.863 63.158 0.00 0.00 38.55 5.12
1434 2266 3.687102 CACACGCGGTACTCCCCA 61.687 66.667 12.47 0.00 0.00 4.96
1756 2589 4.260985 TGGTATTGATGCATTCACTTCGT 58.739 39.130 0.00 0.00 32.84 3.85
1811 2644 4.631813 AGACCGCTTAAACAAGCATTAGAG 59.368 41.667 9.78 0.00 45.75 2.43
2116 2959 5.938322 ACAATTTCACCGCTAACATAAGTG 58.062 37.500 0.00 0.00 0.00 3.16
2122 2965 4.633175 TCACTACAATTTCACCGCTAACA 58.367 39.130 0.00 0.00 0.00 2.41
2144 2987 5.513614 GGCATAATTACCCGGTGGTACTAAT 60.514 44.000 0.00 0.00 46.89 1.73
2160 3003 5.992217 CGCTCTTCTAGGTTTAGGCATAATT 59.008 40.000 0.00 0.00 0.00 1.40
2167 3010 3.288964 TCCTCGCTCTTCTAGGTTTAGG 58.711 50.000 0.00 0.00 0.00 2.69
2172 3016 0.033991 TGCTCCTCGCTCTTCTAGGT 60.034 55.000 0.00 0.00 40.11 3.08
2183 3027 4.339814 AGAGTAGATTAAAGGTGCTCCTCG 59.660 45.833 7.99 0.00 44.35 4.63
2213 3059 9.594936 CCCTTTCCCCATAAATACATTATTACA 57.405 33.333 0.00 0.00 31.69 2.41
2319 3165 7.595819 ATCAGAATAGGTCACTAAGAGGAAG 57.404 40.000 0.00 0.00 31.86 3.46
2413 3266 7.879160 ACCAGTACAATTACATAGTCGGAAAAA 59.121 33.333 0.00 0.00 0.00 1.94
2516 3369 4.978580 CAGCAATGAGATGATGAAATGCAG 59.021 41.667 0.00 0.00 38.99 4.41
2539 3392 6.595772 AGATCACTGATAATGAAACGAAGC 57.404 37.500 0.00 0.00 0.00 3.86
2556 3409 7.437862 CAGCTCTAGAAACCATCTAAAGATCAC 59.562 40.741 0.00 0.00 40.12 3.06
2600 3453 9.354673 AGAGTTTTGAACATTCAAGAGGATTTA 57.645 29.630 7.10 0.00 46.68 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.