Multiple sequence alignment - TraesCS4A01G099400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G099400 chr4A 100.000 4682 0 0 1 4682 111907788 111903107 0.000000e+00 8647.0
1 TraesCS4A01G099400 chr4A 90.909 66 6 0 4123 4188 111903596 111903531 6.450000e-14 89.8
2 TraesCS4A01G099400 chr4A 90.909 66 6 0 4193 4258 111903666 111903601 6.450000e-14 89.8
3 TraesCS4A01G099400 chr4D 93.833 2708 112 25 1990 4675 353426097 353428771 0.000000e+00 4024.0
4 TraesCS4A01G099400 chr4D 91.077 1950 85 44 77 1991 353424169 353426064 0.000000e+00 2555.0
5 TraesCS4A01G099400 chr4D 87.288 118 13 2 2311 2426 382323629 382323746 2.940000e-27 134.0
6 TraesCS4A01G099400 chr4D 91.045 67 5 1 4122 4187 353428311 353428377 6.450000e-14 89.8
7 TraesCS4A01G099400 chr4B 94.086 2232 86 26 2431 4637 436893352 436895562 0.000000e+00 3349.0
8 TraesCS4A01G099400 chr4B 91.978 2219 102 37 77 2263 436891168 436893342 0.000000e+00 3042.0
9 TraesCS4A01G099400 chr4B 87.719 114 12 2 2318 2429 469505393 469505506 1.060000e-26 132.0
10 TraesCS4A01G099400 chr4B 93.939 66 4 0 4122 4187 436895129 436895194 2.980000e-17 100.0
11 TraesCS4A01G099400 chr4B 92.647 68 4 1 4193 4260 436895061 436895127 3.860000e-16 97.1
12 TraesCS4A01G099400 chr5D 88.043 92 11 0 2291 2382 512300869 512300960 4.950000e-20 110.0
13 TraesCS4A01G099400 chr5D 95.833 48 1 1 2284 2331 554480207 554480161 5.020000e-10 76.8
14 TraesCS4A01G099400 chr3D 87.234 94 10 2 2290 2382 305629450 305629542 6.410000e-19 106.0
15 TraesCS4A01G099400 chr7D 86.170 94 13 0 2289 2382 541498600 541498507 8.290000e-18 102.0
16 TraesCS4A01G099400 chr1D 84.694 98 15 0 2319 2416 103682729 103682826 1.070000e-16 99.0
17 TraesCS4A01G099400 chr7A 83.838 99 16 0 2318 2416 466944433 466944531 1.390000e-15 95.3
18 TraesCS4A01G099400 chr3A 84.000 100 14 2 2318 2416 80090600 80090502 1.390000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G099400 chr4A 111903107 111907788 4681 True 8647.000000 8647 100.0000 1 4682 1 chr4A.!!$R1 4681
1 TraesCS4A01G099400 chr4D 353424169 353428771 4602 False 2222.933333 4024 91.9850 77 4675 3 chr4D.!!$F2 4598
2 TraesCS4A01G099400 chr4B 436891168 436895562 4394 False 1647.025000 3349 93.1625 77 4637 4 chr4B.!!$F2 4560

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
69 70 0.100682 GGATTGAGACAGTAGCGCGA 59.899 55.000 12.10 0.0 0.00 5.87 F
77 78 0.589223 ACAGTAGCGCGATAGAGAGC 59.411 55.000 12.10 0.0 38.63 4.09 F
200 201 0.667487 TTGCTGAAGGCGTCGAAGAG 60.667 55.000 1.37 0.0 45.43 2.85 F
637 676 0.686112 CTCCTGAGTCCTGACCCCTC 60.686 65.000 0.00 0.0 0.00 4.30 F
2145 2244 1.679032 GGATTTGTGAACCTCCCCTCG 60.679 57.143 0.00 0.0 0.00 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1752 1810 0.029300 CAGCACCGTTGTTGTTCCTG 59.971 55.0 0.00 0.00 0.00 3.86 R
2011 2108 1.348064 TGCTGTAATAGGATCCCCGG 58.652 55.0 8.55 0.00 37.58 5.73 R
2124 2221 0.328258 AGGGGAGGTTCACAAATCCG 59.672 55.0 0.00 0.00 32.30 4.18 R
2342 2441 0.313987 GGGCATAATTGTAAGGCGCC 59.686 55.0 21.89 21.89 37.33 6.53 R
3977 4100 0.388907 AAATTGACAGCGCATGTGCC 60.389 50.0 26.95 12.93 44.17 5.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.506438 GCGGTAGCTCACGGTGAC 60.506 66.667 6.76 4.79 41.01 3.67
20 21 2.959372 CGGTAGCTCACGGTGACA 59.041 61.111 6.76 0.00 0.00 3.58
21 22 1.511305 CGGTAGCTCACGGTGACAT 59.489 57.895 6.76 1.17 0.00 3.06
22 23 0.802222 CGGTAGCTCACGGTGACATG 60.802 60.000 6.76 0.00 0.00 3.21
23 24 0.460284 GGTAGCTCACGGTGACATGG 60.460 60.000 6.76 0.00 0.00 3.66
24 25 0.246635 GTAGCTCACGGTGACATGGT 59.753 55.000 6.76 6.28 0.00 3.55
25 26 1.475280 GTAGCTCACGGTGACATGGTA 59.525 52.381 6.76 5.29 0.00 3.25
26 27 0.532573 AGCTCACGGTGACATGGTAG 59.467 55.000 6.76 0.00 0.00 3.18
27 28 0.530744 GCTCACGGTGACATGGTAGA 59.469 55.000 6.76 0.00 0.00 2.59
28 29 1.067142 GCTCACGGTGACATGGTAGAA 60.067 52.381 6.76 0.00 0.00 2.10
29 30 2.611971 GCTCACGGTGACATGGTAGAAA 60.612 50.000 6.76 0.00 0.00 2.52
30 31 3.659786 CTCACGGTGACATGGTAGAAAA 58.340 45.455 6.76 0.00 0.00 2.29
31 32 3.659786 TCACGGTGACATGGTAGAAAAG 58.340 45.455 6.76 0.00 0.00 2.27
32 33 2.742053 CACGGTGACATGGTAGAAAAGG 59.258 50.000 0.74 0.00 0.00 3.11
33 34 2.635915 ACGGTGACATGGTAGAAAAGGA 59.364 45.455 0.00 0.00 0.00 3.36
34 35 3.071892 ACGGTGACATGGTAGAAAAGGAA 59.928 43.478 0.00 0.00 0.00 3.36
35 36 4.069304 CGGTGACATGGTAGAAAAGGAAA 58.931 43.478 0.00 0.00 0.00 3.13
36 37 4.517453 CGGTGACATGGTAGAAAAGGAAAA 59.483 41.667 0.00 0.00 0.00 2.29
37 38 5.009210 CGGTGACATGGTAGAAAAGGAAAAA 59.991 40.000 0.00 0.00 0.00 1.94
59 60 6.956202 AAAATGAGATGGATGGATTGAGAC 57.044 37.500 0.00 0.00 0.00 3.36
60 61 5.641789 AATGAGATGGATGGATTGAGACA 57.358 39.130 0.00 0.00 0.00 3.41
61 62 4.684484 TGAGATGGATGGATTGAGACAG 57.316 45.455 0.00 0.00 0.00 3.51
62 63 4.035814 TGAGATGGATGGATTGAGACAGT 58.964 43.478 0.00 0.00 0.00 3.55
63 64 5.211201 TGAGATGGATGGATTGAGACAGTA 58.789 41.667 0.00 0.00 0.00 2.74
64 65 5.303845 TGAGATGGATGGATTGAGACAGTAG 59.696 44.000 0.00 0.00 0.00 2.57
65 66 3.827008 TGGATGGATTGAGACAGTAGC 57.173 47.619 0.00 0.00 0.00 3.58
66 67 2.101415 TGGATGGATTGAGACAGTAGCG 59.899 50.000 0.00 0.00 0.00 4.26
67 68 2.131183 GATGGATTGAGACAGTAGCGC 58.869 52.381 0.00 0.00 0.00 5.92
68 69 0.179137 TGGATTGAGACAGTAGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
69 70 0.100682 GGATTGAGACAGTAGCGCGA 59.899 55.000 12.10 0.00 0.00 5.87
70 71 1.269309 GGATTGAGACAGTAGCGCGAT 60.269 52.381 12.10 5.99 0.00 4.58
71 72 2.031069 GGATTGAGACAGTAGCGCGATA 60.031 50.000 12.10 4.44 0.00 2.92
72 73 2.757686 TTGAGACAGTAGCGCGATAG 57.242 50.000 12.10 0.00 0.00 2.08
73 74 1.949465 TGAGACAGTAGCGCGATAGA 58.051 50.000 12.10 0.00 39.76 1.98
74 75 1.867865 TGAGACAGTAGCGCGATAGAG 59.132 52.381 12.10 5.78 39.76 2.43
75 76 2.136728 GAGACAGTAGCGCGATAGAGA 58.863 52.381 12.10 0.00 38.63 3.10
76 77 2.139917 AGACAGTAGCGCGATAGAGAG 58.860 52.381 12.10 0.00 38.63 3.20
77 78 0.589223 ACAGTAGCGCGATAGAGAGC 59.411 55.000 12.10 0.00 38.63 4.09
108 109 3.261981 TCGGCTTGGGAGAAGTAATTC 57.738 47.619 0.00 0.00 0.00 2.17
111 112 3.686016 GGCTTGGGAGAAGTAATTCACA 58.314 45.455 5.62 0.00 0.00 3.58
117 118 4.058817 GGGAGAAGTAATTCACATAGCCG 58.941 47.826 5.62 0.00 0.00 5.52
122 123 7.291411 AGAAGTAATTCACATAGCCGTATCT 57.709 36.000 5.62 0.00 0.00 1.98
171 172 1.511464 GACGCGTACAGAGGTGACG 60.511 63.158 13.97 0.00 39.55 4.35
174 175 2.202440 CGTACAGAGGTGACGGCG 60.202 66.667 4.80 4.80 33.01 6.46
200 201 0.667487 TTGCTGAAGGCGTCGAAGAG 60.667 55.000 1.37 0.00 45.43 2.85
204 205 1.289380 GAAGGCGTCGAAGAGGTGT 59.711 57.895 1.37 0.00 45.16 4.16
222 223 1.009389 GTTCCTCCTGTGCGTTCTCG 61.009 60.000 0.00 0.00 40.37 4.04
234 235 1.511305 GTTCTCGTGGAGATCGCCA 59.489 57.895 14.91 14.91 38.56 5.69
264 265 2.667199 GGCACCGTAGCGTTGGTT 60.667 61.111 0.00 0.00 35.96 3.67
391 429 2.598985 ATCGGCTAGGGCTCTCGG 60.599 66.667 0.00 0.00 38.73 4.63
407 445 4.465512 GGCGCGTCGTCGTCCTAA 62.466 66.667 8.43 0.00 39.49 2.69
408 446 3.236137 GCGCGTCGTCGTCCTAAC 61.236 66.667 8.43 0.00 39.49 2.34
409 447 2.477845 CGCGTCGTCGTCCTAACT 59.522 61.111 0.00 0.00 39.49 2.24
410 448 1.579626 CGCGTCGTCGTCCTAACTC 60.580 63.158 0.00 0.00 39.49 3.01
411 449 1.226239 GCGTCGTCGTCCTAACTCC 60.226 63.158 3.66 0.00 39.49 3.85
412 450 1.642952 GCGTCGTCGTCCTAACTCCT 61.643 60.000 3.66 0.00 39.49 3.69
413 451 1.645034 CGTCGTCGTCCTAACTCCTA 58.355 55.000 0.00 0.00 0.00 2.94
414 452 2.002586 CGTCGTCGTCCTAACTCCTAA 58.997 52.381 0.00 0.00 0.00 2.69
415 453 2.222908 CGTCGTCGTCCTAACTCCTAAC 60.223 54.545 0.00 0.00 0.00 2.34
416 454 2.002586 TCGTCGTCCTAACTCCTAACG 58.997 52.381 0.00 0.00 34.80 3.18
417 455 1.530646 CGTCGTCCTAACTCCTAACGC 60.531 57.143 0.00 0.00 33.58 4.84
418 456 1.470098 GTCGTCCTAACTCCTAACGCA 59.530 52.381 0.00 0.00 33.58 5.24
419 457 2.095059 GTCGTCCTAACTCCTAACGCAA 60.095 50.000 0.00 0.00 33.58 4.85
420 458 2.756760 TCGTCCTAACTCCTAACGCAAT 59.243 45.455 0.00 0.00 33.58 3.56
421 459 2.858344 CGTCCTAACTCCTAACGCAATG 59.142 50.000 0.00 0.00 0.00 2.82
635 674 1.687493 CCTCCTGAGTCCTGACCCC 60.687 68.421 0.00 0.00 0.00 4.95
636 675 1.390125 CTCCTGAGTCCTGACCCCT 59.610 63.158 0.00 0.00 0.00 4.79
637 676 0.686112 CTCCTGAGTCCTGACCCCTC 60.686 65.000 0.00 0.00 0.00 4.30
638 677 2.055042 CCTGAGTCCTGACCCCTCG 61.055 68.421 0.00 0.00 0.00 4.63
639 678 2.680352 TGAGTCCTGACCCCTCGC 60.680 66.667 0.00 0.00 0.00 5.03
640 679 2.363147 GAGTCCTGACCCCTCGCT 60.363 66.667 0.00 0.00 0.00 4.93
641 680 2.363147 AGTCCTGACCCCTCGCTC 60.363 66.667 0.00 0.00 0.00 5.03
642 681 3.462678 GTCCTGACCCCTCGCTCC 61.463 72.222 0.00 0.00 0.00 4.70
643 682 4.779733 TCCTGACCCCTCGCTCCC 62.780 72.222 0.00 0.00 0.00 4.30
644 683 4.787280 CCTGACCCCTCGCTCCCT 62.787 72.222 0.00 0.00 0.00 4.20
917 969 3.174987 CCTCCACCACCACCACCA 61.175 66.667 0.00 0.00 0.00 4.17
1719 1777 2.358247 CAGGGCGGCAAGTACGTT 60.358 61.111 12.47 0.00 0.00 3.99
1809 1867 2.148768 CAGGTCGTTTCCCAGGTAAAC 58.851 52.381 0.00 0.00 34.25 2.01
1817 1875 2.554370 TCCCAGGTAAACGAAACAGG 57.446 50.000 0.00 0.00 0.00 4.00
1819 1877 2.148768 CCCAGGTAAACGAAACAGGTC 58.851 52.381 0.00 0.00 0.00 3.85
2075 2172 4.937620 CACCACTGTTAACTATGCATCACT 59.062 41.667 0.19 0.00 0.00 3.41
2076 2173 4.937620 ACCACTGTTAACTATGCATCACTG 59.062 41.667 0.19 0.76 0.00 3.66
2096 2193 4.475016 ACTGATATTGCCCCTGTTAGAGTT 59.525 41.667 0.00 0.00 0.00 3.01
2124 2221 6.876257 GGGACATCCACATCTTATACTTCATC 59.124 42.308 0.00 0.00 37.91 2.92
2145 2244 1.679032 GGATTTGTGAACCTCCCCTCG 60.679 57.143 0.00 0.00 0.00 4.63
2297 2396 2.247358 CTGTACCCCAGCCATTGTTTT 58.753 47.619 0.00 0.00 33.59 2.43
2301 2400 4.654262 TGTACCCCAGCCATTGTTTTTAAA 59.346 37.500 0.00 0.00 0.00 1.52
2342 2441 2.388232 GCGGTAAGGTGACCTTGCG 61.388 63.158 26.38 20.02 45.12 4.85
2354 2453 2.406616 CCTTGCGGCGCCTTACAAT 61.407 57.895 30.82 0.00 0.00 2.71
2357 2456 1.333619 CTTGCGGCGCCTTACAATTAT 59.666 47.619 30.82 0.00 0.00 1.28
2554 2653 4.401022 ACTTGGGTCATGTGCATATATGG 58.599 43.478 14.51 0.00 0.00 2.74
2776 2877 8.697846 ATTTGTGATATGCAAGAGTTGAATTG 57.302 30.769 0.00 0.00 29.73 2.32
2814 2915 6.583427 TGATCATGAAAAATGCTCTTTGTTCG 59.417 34.615 0.00 0.00 0.00 3.95
2824 2925 3.002246 TGCTCTTTGTTCGCTGTGTTTAG 59.998 43.478 0.00 0.00 0.00 1.85
2830 2931 4.508461 TGTTCGCTGTGTTTAGCTAGTA 57.492 40.909 0.00 0.00 41.51 1.82
2833 2934 5.105877 TGTTCGCTGTGTTTAGCTAGTATCT 60.106 40.000 0.00 0.00 41.51 1.98
2909 3010 4.646945 TCCAAGCAAGGTTTGACATTGTAA 59.353 37.500 7.22 0.00 41.45 2.41
2994 3095 7.161404 TCATATTTATTTCTACTGCGCCTGAT 58.839 34.615 4.18 0.00 0.00 2.90
3002 3103 0.608130 ACTGCGCCTGATGTTCAGTA 59.392 50.000 4.18 0.00 42.80 2.74
3012 3116 5.064452 GCCTGATGTTCAGTATCTTGTCTTG 59.936 44.000 4.00 0.00 42.80 3.02
3035 3139 2.615391 TCACACTTCCACCCATGACTA 58.385 47.619 0.00 0.00 0.00 2.59
3037 3141 1.909302 ACACTTCCACCCATGACTAGG 59.091 52.381 0.00 0.00 0.00 3.02
3057 3161 2.286294 GGCGCTGAGTGAACATATCTTG 59.714 50.000 7.64 0.00 0.00 3.02
3069 3173 9.334947 AGTGAACATATCTTGTCATAATCCTTG 57.665 33.333 0.00 0.00 37.68 3.61
3110 3214 8.758715 GCATGCTGAATTTTAGATTATTTGTCC 58.241 33.333 11.37 0.00 0.00 4.02
3136 3240 8.996024 TGTTCTTTATTCTCATGTTACATCGA 57.004 30.769 0.00 0.00 0.00 3.59
3207 3311 4.141158 GGGGGTTATGATCAGAAGGTGAAT 60.141 45.833 2.29 0.00 39.19 2.57
3291 3395 1.033746 AAGGAGTGATGGCATTGGCG 61.034 55.000 0.00 0.00 42.47 5.69
3309 3413 2.549349 GGCGACACAAAAGGTAGAGGAA 60.549 50.000 0.00 0.00 0.00 3.36
3333 3437 1.852626 CAAGGAAGGGGGAGTGGGT 60.853 63.158 0.00 0.00 0.00 4.51
3456 3560 1.220169 CTCCGCAAGATGGATCAGCG 61.220 60.000 15.43 15.43 46.13 5.18
3471 3575 0.868406 CAGCGAAGAACCAGAACCAC 59.132 55.000 0.00 0.00 0.00 4.16
3516 3620 3.244911 GGGATGACCAAGACAAGAAGGAA 60.245 47.826 0.00 0.00 39.85 3.36
3609 3713 0.322456 GTTACAGCCATCACAGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
3645 3749 1.741706 AGCAATCAGAATGGAACTGCG 59.258 47.619 0.00 0.00 36.16 5.18
3648 3752 0.107017 ATCAGAATGGAACTGCGGGG 60.107 55.000 0.00 0.00 36.16 5.73
3696 3800 1.818642 GCTGATGCTGGTCTCTTTGT 58.181 50.000 0.00 0.00 36.03 2.83
3713 3817 7.244166 CTCTTTGTGAGAGCCATATACTTTG 57.756 40.000 0.00 0.00 45.05 2.77
3714 3818 5.586243 TCTTTGTGAGAGCCATATACTTTGC 59.414 40.000 0.00 0.00 0.00 3.68
3715 3819 4.486125 TGTGAGAGCCATATACTTTGCA 57.514 40.909 0.00 0.00 0.00 4.08
3716 3820 4.445453 TGTGAGAGCCATATACTTTGCAG 58.555 43.478 0.00 0.00 0.00 4.41
3717 3821 4.162131 TGTGAGAGCCATATACTTTGCAGA 59.838 41.667 0.00 0.00 0.00 4.26
3748 3862 3.252215 CCAGAAAAATGTGAGCGTGGTTA 59.748 43.478 0.00 0.00 0.00 2.85
3764 3880 5.995897 GCGTGGTTATTATTTCAGGATACCT 59.004 40.000 0.00 0.00 37.17 3.08
3773 3889 8.980481 ATTATTTCAGGATACCTAAGTGTTGG 57.020 34.615 0.00 0.00 29.64 3.77
3845 3963 1.269936 GGCATGTTCATATGGCCAAGC 60.270 52.381 10.96 12.44 45.03 4.01
3866 3984 2.167075 CCTCATTTGAAACTGCCATCCC 59.833 50.000 0.00 0.00 0.00 3.85
3867 3985 2.167075 CTCATTTGAAACTGCCATCCCC 59.833 50.000 0.00 0.00 0.00 4.81
3880 3998 3.181440 TGCCATCCCCAGCTATTAAGAAG 60.181 47.826 0.00 0.00 0.00 2.85
3881 3999 3.416156 CCATCCCCAGCTATTAAGAAGC 58.584 50.000 4.76 4.76 40.40 3.86
3942 4065 5.163581 CCCTGCAGATTCTTTATTCCTTGTG 60.164 44.000 17.39 0.00 0.00 3.33
3959 4082 4.457810 CTTGTGCTGATTTGTCGTAGTTG 58.542 43.478 0.00 0.00 0.00 3.16
3977 4100 2.270986 GCAAGTGGCAAGAGGGGTG 61.271 63.158 0.00 0.00 43.97 4.61
3994 4117 1.972752 TGGCACATGCGCTGTCAAT 60.973 52.632 9.73 0.00 43.26 2.57
4070 4193 1.209019 ACCAGCTGATAAGGCACTGAG 59.791 52.381 17.39 0.00 40.86 3.35
4120 4243 3.357021 CGACATGATTTGCCTTTCGATG 58.643 45.455 0.00 0.00 0.00 3.84
4175 4298 3.181443 ACTTTTGGAAGGTCCTACACTGG 60.181 47.826 0.00 0.00 37.46 4.00
4188 4311 4.081862 TCCTACACTGGAAAGAACGTATGG 60.082 45.833 0.00 0.00 32.39 2.74
4191 4314 2.159627 CACTGGAAAGAACGTATGGCAC 59.840 50.000 0.00 0.00 0.00 5.01
4233 4356 1.681264 CTGTGTGTCCCCTTTTGGAAC 59.319 52.381 0.00 0.00 44.07 3.62
4271 4395 7.875327 AAAAACGTGTGCCCTTATAATATCT 57.125 32.000 0.00 0.00 0.00 1.98
4290 4414 8.531622 AATATCTGATTTGCTCATCTAACTCG 57.468 34.615 0.00 0.00 32.10 4.18
4313 4437 9.702726 CTCGTACACTATTTTATCAACCAAATG 57.297 33.333 0.00 0.00 0.00 2.32
4314 4438 9.438228 TCGTACACTATTTTATCAACCAAATGA 57.562 29.630 0.00 0.00 0.00 2.57
4351 4475 6.869315 TCGTCACAAATCTCCACATAAAAA 57.131 33.333 0.00 0.00 0.00 1.94
4352 4476 7.447374 TCGTCACAAATCTCCACATAAAAAT 57.553 32.000 0.00 0.00 0.00 1.82
4353 4477 7.881142 TCGTCACAAATCTCCACATAAAAATT 58.119 30.769 0.00 0.00 0.00 1.82
4354 4478 8.356657 TCGTCACAAATCTCCACATAAAAATTT 58.643 29.630 0.00 0.00 0.00 1.82
4382 4506 3.844211 TGTAGGAGTGAGTTATTGCCCTT 59.156 43.478 0.00 0.00 0.00 3.95
4383 4507 3.356529 AGGAGTGAGTTATTGCCCTTG 57.643 47.619 0.00 0.00 0.00 3.61
4404 4528 7.724061 CCCTTGTAATACTGGTATTTATGCCTT 59.276 37.037 10.64 0.00 37.07 4.35
4405 4529 9.131791 CCTTGTAATACTGGTATTTATGCCTTT 57.868 33.333 10.64 0.00 37.07 3.11
4520 4644 6.516739 TTTGTTGTTGTGAATGTACTCCAA 57.483 33.333 0.00 0.00 0.00 3.53
4642 4766 3.441163 CATGTGCATGCCAACTTGTATC 58.559 45.455 16.68 0.00 31.39 2.24
4675 4799 1.059584 TGTGGTCCATGTGGGTCACT 61.060 55.000 18.80 0.00 40.21 3.41
4676 4800 0.321653 GTGGTCCATGTGGGTCACTC 60.322 60.000 14.11 0.00 38.19 3.51
4677 4801 1.299976 GGTCCATGTGGGTCACTCC 59.700 63.158 0.00 0.00 38.11 3.85
4678 4802 1.488705 GGTCCATGTGGGTCACTCCA 61.489 60.000 0.00 0.00 38.11 3.86
4679 4803 0.620556 GTCCATGTGGGTCACTCCAT 59.379 55.000 0.00 0.00 39.26 3.41
4680 4804 0.620030 TCCATGTGGGTCACTCCATG 59.380 55.000 0.00 0.33 39.26 3.66
4681 4805 0.394762 CCATGTGGGTCACTCCATGG 60.395 60.000 4.97 4.97 45.90 3.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 0.802222 CATGTCACCGTGAGCTACCG 60.802 60.000 0.08 0.00 0.00 4.02
5 6 0.246635 ACCATGTCACCGTGAGCTAC 59.753 55.000 0.08 0.00 0.00 3.58
6 7 1.749063 CTACCATGTCACCGTGAGCTA 59.251 52.381 0.08 0.00 0.00 3.32
7 8 0.532573 CTACCATGTCACCGTGAGCT 59.467 55.000 0.08 0.00 0.00 4.09
8 9 0.530744 TCTACCATGTCACCGTGAGC 59.469 55.000 0.08 0.00 0.00 4.26
9 10 3.313012 TTTCTACCATGTCACCGTGAG 57.687 47.619 0.08 0.00 0.00 3.51
10 11 3.556213 CCTTTTCTACCATGTCACCGTGA 60.556 47.826 0.00 0.00 0.00 4.35
11 12 2.742053 CCTTTTCTACCATGTCACCGTG 59.258 50.000 0.00 0.00 0.00 4.94
12 13 2.635915 TCCTTTTCTACCATGTCACCGT 59.364 45.455 0.00 0.00 0.00 4.83
13 14 3.328382 TCCTTTTCTACCATGTCACCG 57.672 47.619 0.00 0.00 0.00 4.94
14 15 6.399639 TTTTTCCTTTTCTACCATGTCACC 57.600 37.500 0.00 0.00 0.00 4.02
35 36 6.893554 TGTCTCAATCCATCCATCTCATTTTT 59.106 34.615 0.00 0.00 0.00 1.94
36 37 6.429151 TGTCTCAATCCATCCATCTCATTTT 58.571 36.000 0.00 0.00 0.00 1.82
37 38 6.009908 TGTCTCAATCCATCCATCTCATTT 57.990 37.500 0.00 0.00 0.00 2.32
38 39 5.132312 ACTGTCTCAATCCATCCATCTCATT 59.868 40.000 0.00 0.00 0.00 2.57
39 40 4.659368 ACTGTCTCAATCCATCCATCTCAT 59.341 41.667 0.00 0.00 0.00 2.90
40 41 4.035814 ACTGTCTCAATCCATCCATCTCA 58.964 43.478 0.00 0.00 0.00 3.27
41 42 4.686191 ACTGTCTCAATCCATCCATCTC 57.314 45.455 0.00 0.00 0.00 2.75
42 43 4.040217 GCTACTGTCTCAATCCATCCATCT 59.960 45.833 0.00 0.00 0.00 2.90
43 44 4.314121 GCTACTGTCTCAATCCATCCATC 58.686 47.826 0.00 0.00 0.00 3.51
44 45 3.244009 CGCTACTGTCTCAATCCATCCAT 60.244 47.826 0.00 0.00 0.00 3.41
45 46 2.101415 CGCTACTGTCTCAATCCATCCA 59.899 50.000 0.00 0.00 0.00 3.41
46 47 2.748605 CGCTACTGTCTCAATCCATCC 58.251 52.381 0.00 0.00 0.00 3.51
47 48 2.131183 GCGCTACTGTCTCAATCCATC 58.869 52.381 0.00 0.00 0.00 3.51
48 49 1.536922 CGCGCTACTGTCTCAATCCAT 60.537 52.381 5.56 0.00 0.00 3.41
49 50 0.179137 CGCGCTACTGTCTCAATCCA 60.179 55.000 5.56 0.00 0.00 3.41
50 51 0.100682 TCGCGCTACTGTCTCAATCC 59.899 55.000 5.56 0.00 0.00 3.01
51 52 2.126914 ATCGCGCTACTGTCTCAATC 57.873 50.000 5.56 0.00 0.00 2.67
52 53 2.879026 TCTATCGCGCTACTGTCTCAAT 59.121 45.455 5.56 0.00 0.00 2.57
53 54 2.285977 TCTATCGCGCTACTGTCTCAA 58.714 47.619 5.56 0.00 0.00 3.02
54 55 1.867865 CTCTATCGCGCTACTGTCTCA 59.132 52.381 5.56 0.00 0.00 3.27
55 56 2.136728 TCTCTATCGCGCTACTGTCTC 58.863 52.381 5.56 0.00 0.00 3.36
56 57 2.139917 CTCTCTATCGCGCTACTGTCT 58.860 52.381 5.56 0.00 0.00 3.41
57 58 1.399215 GCTCTCTATCGCGCTACTGTC 60.399 57.143 5.56 0.00 0.00 3.51
58 59 0.589223 GCTCTCTATCGCGCTACTGT 59.411 55.000 5.56 0.00 0.00 3.55
59 60 0.451957 CGCTCTCTATCGCGCTACTG 60.452 60.000 5.56 0.00 43.01 2.74
60 61 1.863491 CGCTCTCTATCGCGCTACT 59.137 57.895 5.56 0.00 43.01 2.57
61 62 4.426029 CGCTCTCTATCGCGCTAC 57.574 61.111 5.56 0.00 43.01 3.58
66 67 2.483106 TGGTATACACGCTCTCTATCGC 59.517 50.000 5.01 0.00 0.00 4.58
67 68 4.492732 CGATGGTATACACGCTCTCTATCG 60.493 50.000 5.01 0.00 0.00 2.92
68 69 4.201832 CCGATGGTATACACGCTCTCTATC 60.202 50.000 5.01 0.00 0.00 2.08
69 70 3.690139 CCGATGGTATACACGCTCTCTAT 59.310 47.826 5.01 0.00 0.00 1.98
70 71 3.072211 CCGATGGTATACACGCTCTCTA 58.928 50.000 5.01 0.00 0.00 2.43
71 72 1.880675 CCGATGGTATACACGCTCTCT 59.119 52.381 5.01 0.00 0.00 3.10
72 73 1.666311 GCCGATGGTATACACGCTCTC 60.666 57.143 5.01 0.00 0.00 3.20
73 74 0.314302 GCCGATGGTATACACGCTCT 59.686 55.000 5.01 0.00 0.00 4.09
74 75 0.314302 AGCCGATGGTATACACGCTC 59.686 55.000 5.01 2.97 0.00 5.03
75 76 0.750850 AAGCCGATGGTATACACGCT 59.249 50.000 5.01 0.81 0.00 5.07
76 77 0.859232 CAAGCCGATGGTATACACGC 59.141 55.000 5.01 0.00 0.00 5.34
77 78 1.497991 CCAAGCCGATGGTATACACG 58.502 55.000 5.01 7.21 35.65 4.49
78 79 1.414919 TCCCAAGCCGATGGTATACAC 59.585 52.381 5.01 0.00 38.91 2.90
79 80 1.691976 CTCCCAAGCCGATGGTATACA 59.308 52.381 5.01 0.00 38.91 2.29
80 81 1.968493 TCTCCCAAGCCGATGGTATAC 59.032 52.381 0.00 0.00 38.91 1.47
81 82 2.391926 TCTCCCAAGCCGATGGTATA 57.608 50.000 0.70 0.00 38.91 1.47
82 83 1.417890 CTTCTCCCAAGCCGATGGTAT 59.582 52.381 0.70 0.00 38.91 2.73
108 109 1.266989 TCGCTCAGATACGGCTATGTG 59.733 52.381 0.00 0.00 0.00 3.21
111 112 0.882474 GGTCGCTCAGATACGGCTAT 59.118 55.000 0.00 0.00 33.59 2.97
156 157 2.506438 GCCGTCACCTCTGTACGC 60.506 66.667 0.00 0.00 35.36 4.42
158 159 2.506438 GCGCCGTCACCTCTGTAC 60.506 66.667 0.00 0.00 0.00 2.90
159 160 3.755628 GGCGCCGTCACCTCTGTA 61.756 66.667 12.58 0.00 0.00 2.74
200 201 1.227853 AACGCACAGGAGGAACACC 60.228 57.895 0.00 0.00 40.21 4.16
204 205 1.289066 CGAGAACGCACAGGAGGAA 59.711 57.895 0.00 0.00 0.00 3.36
213 214 1.136774 CGATCTCCACGAGAACGCA 59.863 57.895 8.14 0.00 44.85 5.24
222 223 0.454600 TCTACGTTGGCGATCTCCAC 59.545 55.000 3.26 0.00 42.00 4.02
323 330 4.361971 AGGTGCCGACGGAGGAGA 62.362 66.667 20.50 0.00 0.00 3.71
365 375 0.174389 CCCTAGCCGATCGATCATGG 59.826 60.000 24.40 18.56 0.00 3.66
366 376 0.459237 GCCCTAGCCGATCGATCATG 60.459 60.000 24.40 15.55 0.00 3.07
391 429 3.236137 GTTAGGACGACGACGCGC 61.236 66.667 5.73 0.00 43.96 6.86
401 439 2.608090 GCATTGCGTTAGGAGTTAGGAC 59.392 50.000 0.00 0.00 0.00 3.85
416 454 1.006825 GTTTCCGTTTCCCGCATTGC 61.007 55.000 0.00 0.00 34.38 3.56
417 455 0.727793 CGTTTCCGTTTCCCGCATTG 60.728 55.000 0.00 0.00 34.38 2.82
418 456 0.885596 TCGTTTCCGTTTCCCGCATT 60.886 50.000 0.00 0.00 35.01 3.56
419 457 1.301874 TCGTTTCCGTTTCCCGCAT 60.302 52.632 0.00 0.00 35.01 4.73
420 458 2.108566 TCGTTTCCGTTTCCCGCA 59.891 55.556 0.00 0.00 35.01 5.69
421 459 2.552768 GTCGTTTCCGTTTCCCGC 59.447 61.111 0.00 0.00 35.01 6.13
461 499 0.109913 ACAAAAACCGACCCCTCCTC 59.890 55.000 0.00 0.00 0.00 3.71
462 500 0.554305 AACAAAAACCGACCCCTCCT 59.446 50.000 0.00 0.00 0.00 3.69
571 610 2.264794 GTAGGGCTCGGGTGTGTG 59.735 66.667 0.00 0.00 0.00 3.82
572 611 3.001406 GGTAGGGCTCGGGTGTGT 61.001 66.667 0.00 0.00 0.00 3.72
573 612 3.782443 GGGTAGGGCTCGGGTGTG 61.782 72.222 0.00 0.00 0.00 3.82
580 619 4.828296 TCGGGTCGGGTAGGGCTC 62.828 72.222 0.00 0.00 0.00 4.70
635 674 0.036875 AAACTGGGAAAGGGAGCGAG 59.963 55.000 0.00 0.00 0.00 5.03
636 675 0.036306 GAAACTGGGAAAGGGAGCGA 59.964 55.000 0.00 0.00 0.00 4.93
637 676 0.960861 GGAAACTGGGAAAGGGAGCG 60.961 60.000 0.00 0.00 0.00 5.03
638 677 0.405973 AGGAAACTGGGAAAGGGAGC 59.594 55.000 0.00 0.00 41.13 4.70
639 678 1.339151 CGAGGAAACTGGGAAAGGGAG 60.339 57.143 0.00 0.00 44.43 4.30
640 679 0.690762 CGAGGAAACTGGGAAAGGGA 59.309 55.000 0.00 0.00 44.43 4.20
641 680 0.960861 GCGAGGAAACTGGGAAAGGG 60.961 60.000 0.00 0.00 44.43 3.95
642 681 0.960861 GGCGAGGAAACTGGGAAAGG 60.961 60.000 0.00 0.00 44.43 3.11
643 682 0.960861 GGGCGAGGAAACTGGGAAAG 60.961 60.000 0.00 0.00 44.43 2.62
644 683 1.074248 GGGCGAGGAAACTGGGAAA 59.926 57.895 0.00 0.00 44.43 3.13
736 781 2.035312 ACTCCTCACGGTAGGCGT 59.965 61.111 0.57 0.00 36.51 5.68
869 914 4.856607 GAACGGGGAGCGAGCGAG 62.857 72.222 0.00 0.00 0.00 5.03
917 969 1.083141 GAGGAGGGGGAAAGGAGGT 59.917 63.158 0.00 0.00 0.00 3.85
1047 1099 2.654912 GACGCACGTCTTGTTCCCG 61.655 63.158 15.56 0.00 41.57 5.14
1719 1777 3.407967 GGGGTGGATCCGAAGCCA 61.408 66.667 19.07 0.00 39.08 4.75
1752 1810 0.029300 CAGCACCGTTGTTGTTCCTG 59.971 55.000 0.00 0.00 0.00 3.86
1836 1894 8.174757 TGCAGGTATATAGGGAGTAGTTGATAA 58.825 37.037 0.00 0.00 0.00 1.75
2011 2108 1.348064 TGCTGTAATAGGATCCCCGG 58.652 55.000 8.55 0.00 37.58 5.73
2075 2172 4.721776 AGAACTCTAACAGGGGCAATATCA 59.278 41.667 0.00 0.00 0.00 2.15
2076 2173 5.059833 CAGAACTCTAACAGGGGCAATATC 58.940 45.833 0.00 0.00 0.00 1.63
2124 2221 0.328258 AGGGGAGGTTCACAAATCCG 59.672 55.000 0.00 0.00 32.30 4.18
2145 2244 2.723273 AGGGGCACTTTAACTACATGC 58.277 47.619 0.00 0.00 35.51 4.06
2297 2396 0.766131 TCCAAGGTGGGACGCTTTAA 59.234 50.000 0.00 0.00 35.49 1.52
2342 2441 0.313987 GGGCATAATTGTAAGGCGCC 59.686 55.000 21.89 21.89 37.33 6.53
2475 2574 5.231702 ACCTTAAGTAACCAAATGACGGA 57.768 39.130 0.97 0.00 0.00 4.69
2476 2575 5.952526 AACCTTAAGTAACCAAATGACGG 57.047 39.130 0.97 0.00 0.00 4.79
2614 2715 7.014808 CCTGAAAAGGTAAAATGGTAAGGAACA 59.985 37.037 0.00 0.00 0.00 3.18
2723 2824 5.232463 CAAAGCATTGCAAGTACCTTTGAT 58.768 37.500 24.48 8.04 40.73 2.57
2776 2877 4.569761 TCATGATCAACTAGACTACGGC 57.430 45.455 0.00 0.00 0.00 5.68
2814 2915 7.778470 AATCAAGATACTAGCTAAACACAGC 57.222 36.000 0.00 0.00 42.12 4.40
2833 2934 9.658799 CAGGAGAGTCTAACAAGATTTAATCAA 57.341 33.333 7.74 0.00 0.00 2.57
2964 3065 9.151471 GGCGCAGTAGAAATAAATATGAATAGA 57.849 33.333 10.83 0.00 0.00 1.98
2967 3068 7.661437 TCAGGCGCAGTAGAAATAAATATGAAT 59.339 33.333 10.83 0.00 0.00 2.57
2994 3095 7.246674 GTGAAACAAGACAAGATACTGAACA 57.753 36.000 0.00 0.00 36.32 3.18
3012 3116 2.293399 GTCATGGGTGGAAGTGTGAAAC 59.707 50.000 0.00 0.00 37.35 2.78
3035 3139 1.759445 AGATATGTTCACTCAGCGCCT 59.241 47.619 2.29 0.00 0.00 5.52
3037 3141 2.932614 ACAAGATATGTTCACTCAGCGC 59.067 45.455 0.00 0.00 40.06 5.92
3069 3173 4.021632 TCAGCATGCACTATATCCTGAGAC 60.022 45.833 21.98 0.00 34.76 3.36
3110 3214 9.087424 TCGATGTAACATGAGAATAAAGAACAG 57.913 33.333 0.00 0.00 0.00 3.16
3207 3311 6.516739 TTGGTTACAACATTGACAGTTTCA 57.483 33.333 0.00 0.00 0.00 2.69
3291 3395 5.297029 GGCATATTCCTCTACCTTTTGTGTC 59.703 44.000 0.00 0.00 0.00 3.67
3309 3413 1.152649 CTCCCCCTTCCTTGGCATAT 58.847 55.000 0.00 0.00 0.00 1.78
3333 3437 1.508667 AATCATCACCCCAGCCACCA 61.509 55.000 0.00 0.00 0.00 4.17
3405 3509 3.059982 CCGTTGCTGGTCTCCTGA 58.940 61.111 0.00 0.00 0.00 3.86
3456 3560 3.888930 TGGAATTGTGGTTCTGGTTCTTC 59.111 43.478 0.00 0.00 0.00 2.87
3516 3620 1.303155 GCTTGTCTTGGCAGGCTCT 60.303 57.895 2.06 0.00 38.27 4.09
3564 3668 2.093306 AACCGTCATCTTTCGCATCA 57.907 45.000 0.00 0.00 0.00 3.07
3609 3713 2.846532 CTCCCACCCTTGTTGGCT 59.153 61.111 0.00 0.00 0.00 4.75
3648 3752 1.228154 GTCGGCCCAATATGACCCC 60.228 63.158 0.00 0.00 0.00 4.95
3696 3800 4.406972 ACTCTGCAAAGTATATGGCTCTCA 59.593 41.667 0.00 0.00 0.00 3.27
3712 3816 6.377996 ACATTTTTCTGGCATATAACTCTGCA 59.622 34.615 0.00 0.00 40.18 4.41
3713 3817 6.694411 CACATTTTTCTGGCATATAACTCTGC 59.306 38.462 0.00 0.00 37.66 4.26
3714 3818 7.988737 TCACATTTTTCTGGCATATAACTCTG 58.011 34.615 0.00 0.00 0.00 3.35
3715 3819 7.201767 GCTCACATTTTTCTGGCATATAACTCT 60.202 37.037 0.00 0.00 0.00 3.24
3716 3820 6.914757 GCTCACATTTTTCTGGCATATAACTC 59.085 38.462 0.00 0.00 0.00 3.01
3717 3821 6.458751 CGCTCACATTTTTCTGGCATATAACT 60.459 38.462 0.00 0.00 0.00 2.24
3748 3862 8.778059 TCCAACACTTAGGTATCCTGAAATAAT 58.222 33.333 0.00 0.00 34.61 1.28
3764 3880 9.457436 AAAAACTCTTTTACTCTCCAACACTTA 57.543 29.630 0.00 0.00 32.85 2.24
3819 3937 2.871637 GCCATATGAACATGCCGCTAGA 60.872 50.000 3.65 0.00 0.00 2.43
3845 3963 2.167075 GGGATGGCAGTTTCAAATGAGG 59.833 50.000 0.00 0.00 0.00 3.86
3866 3984 3.079960 TCGACGCTTCTTAATAGCTGG 57.920 47.619 0.00 0.00 36.49 4.85
3867 3985 5.232202 TCAATTCGACGCTTCTTAATAGCTG 59.768 40.000 0.00 4.87 36.49 4.24
3880 3998 7.162062 GTGTAGATTACAATTTCAATTCGACGC 59.838 37.037 0.00 0.00 40.93 5.19
3881 3999 8.166066 TGTGTAGATTACAATTTCAATTCGACG 58.834 33.333 0.00 0.00 40.93 5.12
3909 4027 3.118531 AGAATCTGCAGGGGAAGTATGT 58.881 45.455 15.13 0.00 0.00 2.29
3910 4028 3.853355 AGAATCTGCAGGGGAAGTATG 57.147 47.619 15.13 0.00 0.00 2.39
3911 4029 4.870021 AAAGAATCTGCAGGGGAAGTAT 57.130 40.909 15.13 0.00 0.00 2.12
3912 4030 5.975988 ATAAAGAATCTGCAGGGGAAGTA 57.024 39.130 15.13 0.77 0.00 2.24
3913 4031 4.870021 ATAAAGAATCTGCAGGGGAAGT 57.130 40.909 15.13 0.00 0.00 3.01
3914 4032 4.582240 GGAATAAAGAATCTGCAGGGGAAG 59.418 45.833 15.13 0.00 0.00 3.46
3915 4033 4.230502 AGGAATAAAGAATCTGCAGGGGAA 59.769 41.667 15.13 0.00 0.00 3.97
3917 4035 4.176120 AGGAATAAAGAATCTGCAGGGG 57.824 45.455 15.13 0.00 0.00 4.79
3942 4065 3.058914 ACTTGCAACTACGACAAATCAGC 60.059 43.478 0.00 0.00 0.00 4.26
3959 4082 2.116125 ACCCCTCTTGCCACTTGC 59.884 61.111 0.00 0.00 41.77 4.01
3977 4100 0.388907 AAATTGACAGCGCATGTGCC 60.389 50.000 26.95 12.93 44.17 5.01
4120 4243 0.684479 GCCCCTTCCTGGAATCAACC 60.684 60.000 10.03 0.00 38.35 3.77
4164 4287 3.382048 ACGTTCTTTCCAGTGTAGGAC 57.618 47.619 0.00 0.00 37.42 3.85
4175 4298 4.946784 ATCAAGTGCCATACGTTCTTTC 57.053 40.909 0.00 0.00 0.00 2.62
4188 4311 1.467920 CCCTTCCTGGAATCAAGTGC 58.532 55.000 10.03 0.00 38.35 4.40
4191 4314 0.627986 AGCCCCTTCCTGGAATCAAG 59.372 55.000 10.03 0.00 38.35 3.02
4255 4379 7.391554 TGAGCAAATCAGATATTATAAGGGCAC 59.608 37.037 0.00 0.00 32.77 5.01
4257 4381 7.928307 TGAGCAAATCAGATATTATAAGGGC 57.072 36.000 0.00 0.00 32.77 5.19
4271 4395 5.805486 GTGTACGAGTTAGATGAGCAAATCA 59.195 40.000 0.00 0.00 43.70 2.57
4326 4450 7.447374 TTTTATGTGGAGATTTGTGACGATT 57.553 32.000 0.00 0.00 0.00 3.34
4351 4475 9.314321 CAATAACTCACTCCTACATCGTTAAAT 57.686 33.333 0.00 0.00 0.00 1.40
4352 4476 7.277098 GCAATAACTCACTCCTACATCGTTAAA 59.723 37.037 0.00 0.00 0.00 1.52
4353 4477 6.755141 GCAATAACTCACTCCTACATCGTTAA 59.245 38.462 0.00 0.00 0.00 2.01
4354 4478 6.270815 GCAATAACTCACTCCTACATCGTTA 58.729 40.000 0.00 0.00 0.00 3.18
4440 4564 6.651225 GCTCTAGGTCAAAACTACAGTTTCAT 59.349 38.462 7.76 0.00 46.47 2.57
4463 4587 3.449746 AGACTACTTGAGGTCTCTGCT 57.550 47.619 0.00 0.00 38.25 4.24
4549 4673 2.166050 CTGTCTCTCCACATGAGGACTG 59.834 54.545 7.91 4.29 41.76 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.