Multiple sequence alignment - TraesCS4A01G099100

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G099100 chr4A 100.000 5111 0 0 1 5111 111087149 111092259 0.000000e+00 9439
1 TraesCS4A01G099100 chr4B 95.363 2782 80 22 1802 4557 437214660 437211902 0.000000e+00 4377
2 TraesCS4A01G099100 chr4B 89.107 1019 50 21 741 1716 437215705 437214705 0.000000e+00 1210
3 TraesCS4A01G099100 chr4B 86.878 442 13 14 1 433 437216610 437216205 2.170000e-123 453
4 TraesCS4A01G099100 chr4B 91.630 227 13 2 459 679 437216210 437215984 4.970000e-80 309
5 TraesCS4A01G099100 chr4B 91.979 187 10 2 1508 1694 216207611 216207792 1.830000e-64 257
6 TraesCS4A01G099100 chr4D 92.065 2659 101 48 2320 4944 353759782 353757200 0.000000e+00 3640
7 TraesCS4A01G099100 chr4D 89.969 1306 53 25 456 1716 353761678 353760406 0.000000e+00 1615
8 TraesCS4A01G099100 chr4D 94.858 564 17 7 1762 2321 353760397 353759842 0.000000e+00 870
9 TraesCS4A01G099100 chr4D 84.424 443 32 17 1 433 353762085 353761670 7.970000e-108 401
10 TraesCS4A01G099100 chr2B 80.631 888 98 29 3168 4038 595292856 595293686 2.020000e-173 619
11 TraesCS4A01G099100 chr2B 93.048 187 9 1 1508 1694 128052022 128051840 2.350000e-68 270
12 TraesCS4A01G099100 chr2B 92.265 181 10 2 1508 1688 702208172 702208348 2.360000e-63 254
13 TraesCS4A01G099100 chr7A 78.026 537 66 21 4502 5003 685908785 685909304 1.800000e-74 291
14 TraesCS4A01G099100 chr7B 93.583 187 8 1 1508 1694 63962475 63962293 5.040000e-70 276
15 TraesCS4A01G099100 chr1B 93.583 187 8 1 1508 1694 569794932 569794750 5.040000e-70 276
16 TraesCS4A01G099100 chr1B 93.048 187 9 1 1508 1694 152574786 152574604 2.350000e-68 270
17 TraesCS4A01G099100 chr1B 91.979 187 11 1 1508 1694 639383370 639383188 5.080000e-65 259
18 TraesCS4A01G099100 chr3B 92.513 187 10 1 1508 1694 304556771 304556589 1.090000e-66 265
19 TraesCS4A01G099100 chr3B 91.444 187 12 1 1508 1694 738041257 738041075 2.360000e-63 254
20 TraesCS4A01G099100 chr3D 85.185 243 12 7 200 426 14156629 14156863 1.430000e-55 228
21 TraesCS4A01G099100 chr3D 92.667 150 9 2 456 604 14156862 14157010 1.110000e-51 215


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G099100 chr4A 111087149 111092259 5110 False 9439.00 9439 100.0000 1 5111 1 chr4A.!!$F1 5110
1 TraesCS4A01G099100 chr4B 437211902 437216610 4708 True 1587.25 4377 90.7445 1 4557 4 chr4B.!!$R1 4556
2 TraesCS4A01G099100 chr4D 353757200 353762085 4885 True 1631.50 3640 90.3290 1 4944 4 chr4D.!!$R1 4943
3 TraesCS4A01G099100 chr2B 595292856 595293686 830 False 619.00 619 80.6310 3168 4038 1 chr2B.!!$F1 870
4 TraesCS4A01G099100 chr7A 685908785 685909304 519 False 291.00 291 78.0260 4502 5003 1 chr7A.!!$F1 501

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 672 0.035176 GGATGGGATCTGAGCTGAGC 59.965 60.000 0.00 0.0 0.00 4.26 F
954 1221 0.036952 CGTGTGGCTTCTGACCATCT 60.037 55.000 0.00 0.0 39.95 2.90 F
1790 2092 0.176680 ACATGATTCGAAGCTCGGCT 59.823 50.000 15.31 0.0 42.56 5.52 F
1797 2099 0.249197 TCGAAGCTCGGCTCATCATG 60.249 55.000 5.87 0.0 38.25 3.07 F
1798 2100 0.529337 CGAAGCTCGGCTCATCATGT 60.529 55.000 0.00 0.0 38.25 3.21 F
1799 2101 1.269257 CGAAGCTCGGCTCATCATGTA 60.269 52.381 0.00 0.0 38.25 2.29 F
2035 2338 1.918262 TCATCTCCTTTCCATGTGGCT 59.082 47.619 0.00 0.0 34.44 4.75 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1780 2082 2.035193 TCTACATGATGAGCCGAGCTTC 59.965 50.000 0.00 0.0 39.88 3.86 R
2516 2890 2.104111 AGTGGTTCGGTGACATCTGAAA 59.896 45.455 2.21 0.0 34.98 2.69 R
3650 4040 0.858583 GCGCGTTGCCAAAGATTTTT 59.141 45.000 8.43 0.0 37.76 1.94 R
3711 4101 2.154462 CCAGTTCATCACCACAGGAAC 58.846 52.381 0.00 0.0 39.83 3.62 R
3814 4212 5.880054 AAAAGGTTGGATGTAATGAGTCG 57.120 39.130 0.00 0.0 0.00 4.18 R
3823 4221 6.048732 ACTTGAAACAAAAAGGTTGGATGT 57.951 33.333 0.00 0.0 0.00 3.06 R
4111 4510 1.614226 CCAAACGTAGGGAGGGGGA 60.614 63.158 0.00 0.0 0.00 4.81 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 1.495878 CCGATGATGCTGCTCACTAC 58.504 55.000 0.00 0.00 0.00 2.73
76 78 2.223665 CGATGATGCTGCTCACTACTGA 60.224 50.000 0.00 0.00 0.00 3.41
153 156 0.959372 GGTCTCGAACCCGACAGAGA 60.959 60.000 5.09 0.00 42.85 3.10
170 176 2.897972 ACCATAGCGGGTCGAACC 59.102 61.111 10.31 10.31 35.96 3.62
179 185 3.618750 GGTCGAACCCCCACACGA 61.619 66.667 0.00 0.00 30.04 4.35
180 186 2.048503 GTCGAACCCCCACACGAG 60.049 66.667 0.00 0.00 35.52 4.18
181 187 3.307906 TCGAACCCCCACACGAGG 61.308 66.667 0.00 0.00 0.00 4.63
182 188 3.307906 CGAACCCCCACACGAGGA 61.308 66.667 0.00 0.00 0.00 3.71
194 200 2.756283 CGAGGAGCCCCGAACTCT 60.756 66.667 0.00 0.00 37.58 3.24
325 356 0.511221 CGTAAACAACGCCCACTGAG 59.489 55.000 0.00 0.00 46.10 3.35
334 365 2.047844 CCCACTGAGGCACTGACG 60.048 66.667 0.00 0.00 41.55 4.35
335 366 2.740055 CCACTGAGGCACTGACGC 60.740 66.667 0.00 0.00 41.55 5.19
355 386 1.202891 CCGAATCCCCTACCAAATCCC 60.203 57.143 0.00 0.00 0.00 3.85
379 410 3.429207 GCCTAATCGCGGTTCTAAATCTC 59.571 47.826 8.47 0.00 0.00 2.75
417 448 2.362503 TGAGCTGTCCCCGTCGAT 60.363 61.111 0.00 0.00 0.00 3.59
429 460 3.545481 GTCGATCGCACGCACCAG 61.545 66.667 11.09 0.00 0.00 4.00
443 474 4.760047 CCAGCGGTTGGGGTCTCG 62.760 72.222 2.48 0.00 43.75 4.04
490 522 2.730672 CTTCCAACCGAAGCGCGAG 61.731 63.158 12.10 0.00 41.61 5.03
591 623 1.800805 CTGATGTCGTTGGAGCAAGT 58.199 50.000 0.00 0.00 0.00 3.16
596 628 3.423154 CGTTGGAGCAAGTCGGGC 61.423 66.667 0.00 0.00 0.00 6.13
629 671 0.686224 GGGATGGGATCTGAGCTGAG 59.314 60.000 0.00 0.00 0.00 3.35
630 672 0.035176 GGATGGGATCTGAGCTGAGC 59.965 60.000 0.00 0.00 0.00 4.26
631 673 1.050204 GATGGGATCTGAGCTGAGCT 58.950 55.000 6.69 6.69 43.88 4.09
632 674 0.759959 ATGGGATCTGAGCTGAGCTG 59.240 55.000 13.71 0.00 39.88 4.24
633 675 0.325016 TGGGATCTGAGCTGAGCTGA 60.325 55.000 13.71 0.99 39.88 4.26
676 718 0.944386 GTGTGTGTTTCATGCGAGGT 59.056 50.000 0.00 0.00 0.00 3.85
679 721 0.107643 TGTGTTTCATGCGAGGTGGA 59.892 50.000 0.00 0.00 0.00 4.02
680 722 0.798776 GTGTTTCATGCGAGGTGGAG 59.201 55.000 0.00 0.00 0.00 3.86
685 727 4.414956 ATGCGAGGTGGAGGGGGA 62.415 66.667 0.00 0.00 0.00 4.81
689 731 3.695825 GAGGTGGAGGGGGAGGGA 61.696 72.222 0.00 0.00 0.00 4.20
690 732 4.026357 AGGTGGAGGGGGAGGGAC 62.026 72.222 0.00 0.00 0.00 4.46
691 733 4.348495 GGTGGAGGGGGAGGGACA 62.348 72.222 0.00 0.00 0.00 4.02
692 734 2.689034 GTGGAGGGGGAGGGACAG 60.689 72.222 0.00 0.00 0.00 3.51
693 735 4.024984 TGGAGGGGGAGGGACAGG 62.025 72.222 0.00 0.00 0.00 4.00
694 736 4.825679 GGAGGGGGAGGGACAGGG 62.826 77.778 0.00 0.00 0.00 4.45
950 1217 2.022129 CGTCGTGTGGCTTCTGACC 61.022 63.158 0.00 0.00 0.00 4.02
953 1220 0.037326 TCGTGTGGCTTCTGACCATC 60.037 55.000 0.00 0.00 39.95 3.51
954 1221 0.036952 CGTGTGGCTTCTGACCATCT 60.037 55.000 0.00 0.00 39.95 2.90
955 1222 1.731720 GTGTGGCTTCTGACCATCTC 58.268 55.000 0.00 0.00 39.95 2.75
956 1223 1.277557 GTGTGGCTTCTGACCATCTCT 59.722 52.381 0.00 0.00 39.95 3.10
957 1224 1.552337 TGTGGCTTCTGACCATCTCTC 59.448 52.381 0.00 0.00 39.95 3.20
1093 1360 4.570930 CTTCTCCAAGTTCTTCCAGGTAC 58.429 47.826 0.00 0.00 0.00 3.34
1096 1363 1.439679 CAAGTTCTTCCAGGTACGCC 58.560 55.000 0.00 0.00 0.00 5.68
1132 1399 1.299014 CTGGATCTCGCTGCTCGTC 60.299 63.158 0.00 0.00 39.67 4.20
1266 1533 2.414426 GGAGAACGAGAAGAACGAGGTC 60.414 54.545 0.00 0.00 34.70 3.85
1330 1610 3.901797 CTGTGCGGGGTCAACTCCC 62.902 68.421 0.00 0.00 46.31 4.30
1365 1645 0.390860 AGTGGCACAGTCAGAGTCAC 59.609 55.000 21.41 0.00 37.51 3.67
1366 1646 0.601311 GTGGCACAGTCAGAGTCACC 60.601 60.000 13.86 0.00 41.80 4.02
1403 1683 4.511734 AGAATTTCGTGAAAACGACGTTC 58.488 39.130 14.58 2.96 42.20 3.95
1424 1704 1.155042 GAGTGGAGAGCTGCTTTGTG 58.845 55.000 2.53 0.00 0.00 3.33
1450 1730 1.338864 CCAGATCTCAGTGTGCAAGCT 60.339 52.381 0.00 0.00 0.00 3.74
1524 1808 3.823304 GGAAACTTTGCTCCACTCTCAAT 59.177 43.478 0.00 0.00 0.00 2.57
1526 1810 5.221322 GGAAACTTTGCTCCACTCTCAATTT 60.221 40.000 0.00 0.00 0.00 1.82
1535 1819 6.428159 TGCTCCACTCTCAATTTCTTTAGAAC 59.572 38.462 0.00 0.00 33.13 3.01
1572 1856 5.819901 GTGGCAATGCTTTAGAGAACTATCT 59.180 40.000 4.82 0.00 39.10 1.98
1593 1895 5.485620 TCTGATCTGTTTCAGAATGTGAGG 58.514 41.667 3.58 0.00 46.92 3.86
1633 1935 3.875727 GCAATGCTTCTGAGATCTTGCTA 59.124 43.478 0.00 0.00 33.75 3.49
1634 1936 4.515944 GCAATGCTTCTGAGATCTTGCTAT 59.484 41.667 0.00 0.00 33.75 2.97
1635 1937 5.561145 GCAATGCTTCTGAGATCTTGCTATG 60.561 44.000 0.00 2.79 33.75 2.23
1636 1938 5.548181 ATGCTTCTGAGATCTTGCTATGA 57.452 39.130 0.00 0.00 0.00 2.15
1637 1939 4.946445 TGCTTCTGAGATCTTGCTATGAG 58.054 43.478 0.00 0.00 0.00 2.90
1638 1940 4.405036 TGCTTCTGAGATCTTGCTATGAGT 59.595 41.667 0.00 0.00 0.00 3.41
1639 1941 4.984161 GCTTCTGAGATCTTGCTATGAGTC 59.016 45.833 0.00 0.00 0.00 3.36
1640 1942 5.221303 GCTTCTGAGATCTTGCTATGAGTCT 60.221 44.000 0.00 0.00 0.00 3.24
1648 1950 6.777091 AGATCTTGCTATGAGTCTGTGACTAT 59.223 38.462 0.00 0.00 43.53 2.12
1651 1953 7.615403 TCTTGCTATGAGTCTGTGACTATTTT 58.385 34.615 0.00 0.00 43.53 1.82
1663 1965 9.315525 GTCTGTGACTATTTTATTCTAGGAACC 57.684 37.037 0.00 0.00 0.00 3.62
1664 1966 9.268282 TCTGTGACTATTTTATTCTAGGAACCT 57.732 33.333 0.00 0.00 0.00 3.50
1665 1967 9.535878 CTGTGACTATTTTATTCTAGGAACCTC 57.464 37.037 0.00 0.00 0.00 3.85
1666 1968 8.483758 TGTGACTATTTTATTCTAGGAACCTCC 58.516 37.037 0.00 0.00 36.58 4.30
1667 1969 7.932491 GTGACTATTTTATTCTAGGAACCTCCC 59.068 40.741 0.00 0.00 37.19 4.30
1676 1978 4.290942 TCTAGGAACCTCCCTTCTGAATC 58.709 47.826 0.00 0.00 37.19 2.52
1678 1980 3.468850 AGGAACCTCCCTTCTGAATCAT 58.531 45.455 0.00 0.00 37.19 2.45
1679 1981 3.201708 AGGAACCTCCCTTCTGAATCATG 59.798 47.826 0.00 0.00 37.19 3.07
1680 1982 2.725221 ACCTCCCTTCTGAATCATGC 57.275 50.000 0.00 0.00 0.00 4.06
1684 1986 3.468770 CTCCCTTCTGAATCATGCAGAG 58.531 50.000 0.00 0.00 42.74 3.35
1711 2013 4.408276 TGTTAGTGGTACTGAGCTCTCTT 58.592 43.478 16.19 1.29 0.00 2.85
1713 2015 6.188407 TGTTAGTGGTACTGAGCTCTCTTAT 58.812 40.000 16.19 0.00 0.00 1.73
1714 2016 6.095580 TGTTAGTGGTACTGAGCTCTCTTATG 59.904 42.308 16.19 1.04 0.00 1.90
1715 2017 4.605183 AGTGGTACTGAGCTCTCTTATGT 58.395 43.478 16.19 6.76 0.00 2.29
1716 2018 5.020132 AGTGGTACTGAGCTCTCTTATGTT 58.980 41.667 16.19 0.00 0.00 2.71
1717 2019 5.126384 AGTGGTACTGAGCTCTCTTATGTTC 59.874 44.000 16.19 2.73 0.00 3.18
1718 2020 5.016831 TGGTACTGAGCTCTCTTATGTTCA 58.983 41.667 16.19 0.00 0.00 3.18
1719 2021 5.105716 TGGTACTGAGCTCTCTTATGTTCAC 60.106 44.000 16.19 1.35 0.00 3.18
1720 2022 4.464069 ACTGAGCTCTCTTATGTTCACC 57.536 45.455 16.19 0.00 0.00 4.02
1721 2023 4.093011 ACTGAGCTCTCTTATGTTCACCT 58.907 43.478 16.19 0.00 0.00 4.00
1722 2024 4.159506 ACTGAGCTCTCTTATGTTCACCTC 59.840 45.833 16.19 0.00 0.00 3.85
1723 2025 4.348486 TGAGCTCTCTTATGTTCACCTCT 58.652 43.478 16.19 0.00 0.00 3.69
1724 2026 4.400884 TGAGCTCTCTTATGTTCACCTCTC 59.599 45.833 16.19 0.00 0.00 3.20
1725 2027 4.609301 AGCTCTCTTATGTTCACCTCTCT 58.391 43.478 0.00 0.00 0.00 3.10
1726 2028 4.644685 AGCTCTCTTATGTTCACCTCTCTC 59.355 45.833 0.00 0.00 0.00 3.20
1727 2029 4.400884 GCTCTCTTATGTTCACCTCTCTCA 59.599 45.833 0.00 0.00 0.00 3.27
1728 2030 5.450412 GCTCTCTTATGTTCACCTCTCTCAG 60.450 48.000 0.00 0.00 0.00 3.35
1729 2031 5.575157 TCTCTTATGTTCACCTCTCTCAGT 58.425 41.667 0.00 0.00 0.00 3.41
1730 2032 6.722328 TCTCTTATGTTCACCTCTCTCAGTA 58.278 40.000 0.00 0.00 0.00 2.74
1731 2033 6.600032 TCTCTTATGTTCACCTCTCTCAGTAC 59.400 42.308 0.00 0.00 0.00 2.73
1732 2034 6.246163 TCTTATGTTCACCTCTCTCAGTACA 58.754 40.000 0.00 0.00 0.00 2.90
1733 2035 6.892456 TCTTATGTTCACCTCTCTCAGTACAT 59.108 38.462 0.00 0.00 0.00 2.29
1734 2036 7.397476 TCTTATGTTCACCTCTCTCAGTACATT 59.603 37.037 0.00 0.00 0.00 2.71
1735 2037 5.808366 TGTTCACCTCTCTCAGTACATTT 57.192 39.130 0.00 0.00 0.00 2.32
1736 2038 6.911250 TGTTCACCTCTCTCAGTACATTTA 57.089 37.500 0.00 0.00 0.00 1.40
1737 2039 7.297936 TGTTCACCTCTCTCAGTACATTTAA 57.702 36.000 0.00 0.00 0.00 1.52
1738 2040 7.732025 TGTTCACCTCTCTCAGTACATTTAAA 58.268 34.615 0.00 0.00 0.00 1.52
1739 2041 8.208224 TGTTCACCTCTCTCAGTACATTTAAAA 58.792 33.333 0.00 0.00 0.00 1.52
1740 2042 9.052759 GTTCACCTCTCTCAGTACATTTAAAAA 57.947 33.333 0.00 0.00 0.00 1.94
1741 2043 8.603242 TCACCTCTCTCAGTACATTTAAAAAC 57.397 34.615 0.00 0.00 0.00 2.43
1742 2044 8.208224 TCACCTCTCTCAGTACATTTAAAAACA 58.792 33.333 0.00 0.00 0.00 2.83
1743 2045 8.499162 CACCTCTCTCAGTACATTTAAAAACAG 58.501 37.037 0.00 0.00 0.00 3.16
1744 2046 8.429641 ACCTCTCTCAGTACATTTAAAAACAGA 58.570 33.333 0.00 0.00 0.00 3.41
1745 2047 8.930760 CCTCTCTCAGTACATTTAAAAACAGAG 58.069 37.037 11.59 11.59 0.00 3.35
1746 2048 8.833231 TCTCTCAGTACATTTAAAAACAGAGG 57.167 34.615 15.07 9.70 0.00 3.69
1747 2049 7.878127 TCTCTCAGTACATTTAAAAACAGAGGG 59.122 37.037 15.07 13.37 29.79 4.30
1748 2050 6.940298 TCTCAGTACATTTAAAAACAGAGGGG 59.060 38.462 15.07 0.00 0.00 4.79
1753 2055 6.644248 ACATTTAAAAACAGAGGGGTGTAC 57.356 37.500 0.00 0.00 0.00 2.90
1785 2087 7.492524 TCTACAATTCTACATGATTCGAAGCT 58.507 34.615 15.31 0.00 0.00 3.74
1786 2088 6.595772 ACAATTCTACATGATTCGAAGCTC 57.404 37.500 15.31 3.26 0.00 4.09
1787 2089 5.233050 ACAATTCTACATGATTCGAAGCTCG 59.767 40.000 15.31 7.95 42.10 5.03
1788 2090 3.355626 TCTACATGATTCGAAGCTCGG 57.644 47.619 15.31 6.49 40.88 4.63
1789 2091 1.789464 CTACATGATTCGAAGCTCGGC 59.211 52.381 15.31 0.00 40.88 5.54
1790 2092 0.176680 ACATGATTCGAAGCTCGGCT 59.823 50.000 15.31 0.00 42.56 5.52
1791 2093 0.857935 CATGATTCGAAGCTCGGCTC 59.142 55.000 15.31 0.16 38.25 4.70
1793 2095 0.461548 TGATTCGAAGCTCGGCTCAT 59.538 50.000 15.31 0.00 38.25 2.90
1794 2096 1.135867 GATTCGAAGCTCGGCTCATC 58.864 55.000 6.08 0.00 38.25 2.92
1796 2098 0.461548 TTCGAAGCTCGGCTCATCAT 59.538 50.000 0.00 0.00 38.25 2.45
1797 2099 0.249197 TCGAAGCTCGGCTCATCATG 60.249 55.000 5.87 0.00 38.25 3.07
1798 2100 0.529337 CGAAGCTCGGCTCATCATGT 60.529 55.000 0.00 0.00 38.25 3.21
1799 2101 1.269257 CGAAGCTCGGCTCATCATGTA 60.269 52.381 0.00 0.00 38.25 2.29
1800 2102 2.402305 GAAGCTCGGCTCATCATGTAG 58.598 52.381 0.00 0.00 38.25 2.74
1824 2126 6.936900 AGAATTCAGTGTTGTTACTATGCAGT 59.063 34.615 8.44 0.00 38.91 4.40
1868 2170 3.165058 TGTAGACCAATCTGATCGTGC 57.835 47.619 0.00 0.00 36.29 5.34
2011 2314 7.148171 GCTGAAGGCATCTTGTAGTAAATTCTT 60.148 37.037 0.00 0.00 41.35 2.52
2014 2317 8.635765 AAGGCATCTTGTAGTAAATTCTTGAA 57.364 30.769 0.00 0.00 0.00 2.69
2035 2338 1.918262 TCATCTCCTTTCCATGTGGCT 59.082 47.619 0.00 0.00 34.44 4.75
2310 2614 7.284489 TGCTTATGTGACTTTCTTTTGGTAACT 59.716 33.333 0.00 0.00 37.61 2.24
2428 2795 2.208431 TGAAAACAAGCCAAATTGCCG 58.792 42.857 0.00 0.00 33.28 5.69
2516 2890 9.217278 TCACATTAATTTTACATTTTGCTGCAT 57.783 25.926 1.84 0.00 0.00 3.96
2796 3171 7.621991 GTGTTTATCACTTAGATCGATTGTGG 58.378 38.462 0.00 0.00 43.13 4.17
3275 3653 4.841246 ACCTATGGACCTAGGATGAACATC 59.159 45.833 17.98 0.00 40.76 3.06
3340 3718 6.295039 TCGGTAATTCTTGTTTGACTTGAC 57.705 37.500 0.00 0.00 0.00 3.18
3355 3737 6.064846 TGACTTGACTTTTTCTGATCTTGC 57.935 37.500 0.00 0.00 0.00 4.01
3364 3753 4.736126 TTTCTGATCTTGCGTCCAGATA 57.264 40.909 0.00 0.00 35.82 1.98
3383 3772 7.232534 TCCAGATAGTTTTGGTGCTTATTTGTT 59.767 33.333 0.00 0.00 35.89 2.83
3534 3924 3.250816 TGGTCACCTTACCAGTGGT 57.749 52.632 20.91 20.91 44.68 4.16
3690 4080 6.314784 GCGCTAACAACTTGATCTGTAAATT 58.685 36.000 0.00 0.00 0.00 1.82
3814 4212 9.482175 AGGTAAGTGGGATATTCTATACTCATC 57.518 37.037 0.00 0.00 0.00 2.92
4080 4479 1.218316 GGACGATTTCAGGGAGCGT 59.782 57.895 0.00 0.00 37.97 5.07
4111 4510 2.024941 CCCAAGAAGACCAAGGCCTAAT 60.025 50.000 5.16 0.00 0.00 1.73
4121 4520 1.926334 AAGGCCTAATCCCCCTCCCT 61.926 60.000 5.16 0.00 0.00 4.20
4122 4521 1.016271 AGGCCTAATCCCCCTCCCTA 61.016 60.000 1.29 0.00 0.00 3.53
4342 4741 5.070001 ACTTGTGCTCCTTATGTTTTAGCA 58.930 37.500 0.00 0.00 40.68 3.49
4347 4746 7.053498 TGTGCTCCTTATGTTTTAGCATATGA 58.947 34.615 6.97 0.00 44.30 2.15
4434 4835 5.298527 TGCCAAGATATTTCTCTGATGCTTG 59.701 40.000 0.00 0.00 33.26 4.01
4435 4836 5.759963 CCAAGATATTTCTCTGATGCTTGC 58.240 41.667 0.00 0.00 32.40 4.01
4438 4839 5.443283 AGATATTTCTCTGATGCTTGCCAA 58.557 37.500 0.00 0.00 0.00 4.52
4441 4842 1.817357 TCTCTGATGCTTGCCAAGTG 58.183 50.000 6.28 0.00 0.00 3.16
4444 4845 0.524862 CTGATGCTTGCCAAGTGGTC 59.475 55.000 6.28 3.04 37.57 4.02
4445 4846 0.895100 TGATGCTTGCCAAGTGGTCC 60.895 55.000 6.28 0.00 37.57 4.46
4451 4852 2.164422 GCTTGCCAAGTGGTCCTATTTC 59.836 50.000 6.28 0.00 37.57 2.17
4470 4871 8.802267 CCTATTTCTTGTCTTTATTTGTTCCCA 58.198 33.333 0.00 0.00 0.00 4.37
4474 4875 9.541143 TTTCTTGTCTTTATTTGTTCCCATTTC 57.459 29.630 0.00 0.00 0.00 2.17
4475 4876 7.666623 TCTTGTCTTTATTTGTTCCCATTTCC 58.333 34.615 0.00 0.00 0.00 3.13
4476 4877 7.508977 TCTTGTCTTTATTTGTTCCCATTTCCT 59.491 33.333 0.00 0.00 0.00 3.36
4477 4878 7.610580 TGTCTTTATTTGTTCCCATTTCCTT 57.389 32.000 0.00 0.00 0.00 3.36
4478 4879 8.028652 TGTCTTTATTTGTTCCCATTTCCTTT 57.971 30.769 0.00 0.00 0.00 3.11
4479 4880 8.147704 TGTCTTTATTTGTTCCCATTTCCTTTC 58.852 33.333 0.00 0.00 0.00 2.62
4486 4887 4.965532 TGTTCCCATTTCCTTTCTTTGGAA 59.034 37.500 0.00 0.00 41.33 3.53
4494 4895 2.884639 TCCTTTCTTTGGAAAAGAGGCG 59.115 45.455 2.94 0.00 40.41 5.52
4495 4896 2.029918 CCTTTCTTTGGAAAAGAGGCGG 60.030 50.000 2.94 2.40 40.41 6.13
4500 4901 0.673437 TTGGAAAAGAGGCGGCAAAG 59.327 50.000 13.08 0.00 0.00 2.77
4550 4957 5.880901 ACATTCAGTATTGGACACTCCTTT 58.119 37.500 0.00 0.00 37.46 3.11
4557 4989 8.768397 TCAGTATTGGACACTCCTTTACATATT 58.232 33.333 0.00 0.00 37.46 1.28
4558 4990 8.830580 CAGTATTGGACACTCCTTTACATATTG 58.169 37.037 0.00 0.00 37.46 1.90
4559 4991 8.768397 AGTATTGGACACTCCTTTACATATTGA 58.232 33.333 0.00 0.00 37.46 2.57
4560 4992 9.561069 GTATTGGACACTCCTTTACATATTGAT 57.439 33.333 0.00 0.00 37.46 2.57
4562 4994 7.864108 TGGACACTCCTTTACATATTGATTG 57.136 36.000 0.00 0.00 37.46 2.67
4564 4996 6.238759 GGACACTCCTTTACATATTGATTGCC 60.239 42.308 0.00 0.00 32.53 4.52
4565 4997 6.186957 ACACTCCTTTACATATTGATTGCCA 58.813 36.000 0.00 0.00 0.00 4.92
4566 4998 6.663093 ACACTCCTTTACATATTGATTGCCAA 59.337 34.615 0.00 0.00 39.41 4.52
4567 4999 7.342799 ACACTCCTTTACATATTGATTGCCAAT 59.657 33.333 0.00 0.00 46.52 3.16
4568 5000 7.864379 CACTCCTTTACATATTGATTGCCAATC 59.136 37.037 10.53 10.53 43.96 2.67
4569 5001 7.781693 ACTCCTTTACATATTGATTGCCAATCT 59.218 33.333 17.73 1.97 43.96 2.40
4570 5002 8.537728 TCCTTTACATATTGATTGCCAATCTT 57.462 30.769 17.73 8.47 43.96 2.40
4571 5003 8.980596 TCCTTTACATATTGATTGCCAATCTTT 58.019 29.630 17.73 8.15 43.96 2.52
4572 5004 9.037737 CCTTTACATATTGATTGCCAATCTTTG 57.962 33.333 17.73 11.75 43.96 2.77
4573 5005 9.806203 CTTTACATATTGATTGCCAATCTTTGA 57.194 29.630 17.73 3.04 43.96 2.69
4576 5008 8.712285 ACATATTGATTGCCAATCTTTGAAAG 57.288 30.769 17.73 0.00 43.96 2.62
4577 5009 7.279313 ACATATTGATTGCCAATCTTTGAAAGC 59.721 33.333 17.73 0.00 43.96 3.51
4578 5010 4.603989 TGATTGCCAATCTTTGAAAGCA 57.396 36.364 17.73 0.00 38.72 3.91
4579 5011 5.155278 TGATTGCCAATCTTTGAAAGCAT 57.845 34.783 17.73 0.00 38.72 3.79
4580 5012 6.283544 TGATTGCCAATCTTTGAAAGCATA 57.716 33.333 17.73 0.00 38.72 3.14
4581 5013 6.334989 TGATTGCCAATCTTTGAAAGCATAG 58.665 36.000 17.73 0.00 38.72 2.23
4582 5014 4.724074 TGCCAATCTTTGAAAGCATAGG 57.276 40.909 0.00 1.14 0.00 2.57
4583 5015 4.343231 TGCCAATCTTTGAAAGCATAGGA 58.657 39.130 0.00 0.00 0.00 2.94
4584 5016 4.158394 TGCCAATCTTTGAAAGCATAGGAC 59.842 41.667 0.00 0.00 0.00 3.85
4585 5017 4.158394 GCCAATCTTTGAAAGCATAGGACA 59.842 41.667 0.00 0.00 0.00 4.02
4586 5018 5.644644 CCAATCTTTGAAAGCATAGGACAC 58.355 41.667 0.00 0.00 0.00 3.67
4587 5019 5.416952 CCAATCTTTGAAAGCATAGGACACT 59.583 40.000 0.00 0.00 0.00 3.55
4588 5020 6.320171 CAATCTTTGAAAGCATAGGACACTG 58.680 40.000 0.00 0.00 0.00 3.66
4589 5021 5.227569 TCTTTGAAAGCATAGGACACTGA 57.772 39.130 0.00 0.00 0.00 3.41
4590 5022 5.809001 TCTTTGAAAGCATAGGACACTGAT 58.191 37.500 0.00 0.00 0.00 2.90
4591 5023 5.877012 TCTTTGAAAGCATAGGACACTGATC 59.123 40.000 0.00 0.00 0.00 2.92
4592 5024 4.824479 TGAAAGCATAGGACACTGATCA 57.176 40.909 0.00 0.00 0.00 2.92
4593 5025 4.763073 TGAAAGCATAGGACACTGATCAG 58.237 43.478 21.37 21.37 0.00 2.90
4617 5049 4.115516 CACCTGTATGTGCTAAGCTACAG 58.884 47.826 2.61 2.61 40.35 2.74
4625 5057 0.942962 GCTAAGCTACAGCATGCCAG 59.057 55.000 15.66 10.34 42.53 4.85
4628 5060 2.431954 AAGCTACAGCATGCCAGATT 57.568 45.000 15.66 11.47 42.53 2.40
4629 5061 2.431954 AGCTACAGCATGCCAGATTT 57.568 45.000 15.66 0.00 42.53 2.17
4630 5062 2.731572 AGCTACAGCATGCCAGATTTT 58.268 42.857 15.66 0.00 42.53 1.82
4658 5090 4.564821 GCCCACTACCTTGTCTGATTTACA 60.565 45.833 0.00 0.00 0.00 2.41
4659 5091 4.935808 CCCACTACCTTGTCTGATTTACAC 59.064 45.833 0.00 0.00 0.00 2.90
4660 5092 5.280011 CCCACTACCTTGTCTGATTTACACT 60.280 44.000 0.00 0.00 0.00 3.55
4661 5093 6.231211 CCACTACCTTGTCTGATTTACACTT 58.769 40.000 0.00 0.00 0.00 3.16
4669 5114 4.756642 TGTCTGATTTACACTTGCTTCTGG 59.243 41.667 0.00 0.00 0.00 3.86
4671 5116 4.041567 TCTGATTTACACTTGCTTCTGGGA 59.958 41.667 0.00 0.00 0.00 4.37
4695 5140 4.995487 CACAGAGTTAAGGTTCCTTGGTAC 59.005 45.833 13.64 9.03 0.00 3.34
4696 5141 4.906060 ACAGAGTTAAGGTTCCTTGGTACT 59.094 41.667 13.64 12.83 0.00 2.73
4697 5142 5.221661 ACAGAGTTAAGGTTCCTTGGTACTG 60.222 44.000 13.64 16.68 0.00 2.74
4698 5143 4.906060 AGAGTTAAGGTTCCTTGGTACTGT 59.094 41.667 13.64 9.66 0.00 3.55
4699 5144 6.014840 CAGAGTTAAGGTTCCTTGGTACTGTA 60.015 42.308 13.64 0.00 0.00 2.74
4710 5155 8.827677 GTTCCTTGGTACTGTATGTGATAAATC 58.172 37.037 0.00 0.00 0.00 2.17
4738 5183 5.283294 TCTTCATTCATGTTTGCTGTTGTG 58.717 37.500 0.00 0.00 0.00 3.33
4749 5194 4.662468 TTGCTGTTGTGGCAAAGAAATA 57.338 36.364 0.00 0.00 45.05 1.40
4751 5196 5.212532 TGCTGTTGTGGCAAAGAAATATT 57.787 34.783 0.00 0.00 36.71 1.28
4761 5223 5.721000 TGGCAAAGAAATATTCTCCCAATGT 59.279 36.000 0.00 0.00 39.61 2.71
4769 5231 0.477597 TTCTCCCAATGTCCAGGGGT 60.478 55.000 0.00 0.00 45.51 4.95
4770 5232 1.207488 TCTCCCAATGTCCAGGGGTG 61.207 60.000 0.00 0.00 45.51 4.61
4771 5233 1.465188 TCCCAATGTCCAGGGGTGT 60.465 57.895 0.00 0.00 45.51 4.16
4775 5237 1.272648 CCAATGTCCAGGGGTGTGAAT 60.273 52.381 0.00 0.00 0.00 2.57
4784 5246 5.238650 GTCCAGGGGTGTGAATAATATTTCG 59.761 44.000 0.00 0.00 0.00 3.46
4787 5249 3.058501 GGGGTGTGAATAATATTTCGCGG 60.059 47.826 6.13 0.00 38.63 6.46
4795 5257 1.714899 AATATTTCGCGGCGCTGCTT 61.715 50.000 36.09 21.09 0.00 3.91
4810 5272 0.323629 TGCTTCCTTTACCAGGGTCG 59.676 55.000 0.00 0.00 44.12 4.79
4826 5288 2.224305 GGGTCGGATTATCCACCAGAAG 60.224 54.545 23.95 4.94 38.58 2.85
4828 5290 3.243907 GGTCGGATTATCCACCAGAAGAG 60.244 52.174 20.35 0.79 37.53 2.85
4835 5297 1.633774 TCCACCAGAAGAGTGACCTC 58.366 55.000 0.00 0.00 37.42 3.85
4877 5339 2.098614 TGTTTCTGCAGCAACCTGAAA 58.901 42.857 23.59 8.62 41.77 2.69
4909 5371 2.682856 TCTGCTTGTAATCGGGAAATGC 59.317 45.455 0.00 0.00 0.00 3.56
4937 5399 1.408702 GCCACCTGCTGAAACAAAGAA 59.591 47.619 0.00 0.00 36.87 2.52
4962 5424 9.875691 AAGTTTGCTTTTACTTCATTTTCTTCT 57.124 25.926 0.00 0.00 28.79 2.85
4967 5429 9.950680 TGCTTTTACTTCATTTTCTTCTACTTG 57.049 29.630 0.00 0.00 0.00 3.16
4990 5452 9.888878 CTTGTATATTTATTCCAATGTCTGCTG 57.111 33.333 0.00 0.00 0.00 4.41
4993 5455 7.886629 ATATTTATTCCAATGTCTGCTGTGT 57.113 32.000 0.00 0.00 0.00 3.72
5003 5465 2.158769 TGTCTGCTGTGTTTGATCCTGT 60.159 45.455 0.00 0.00 0.00 4.00
5004 5466 3.070878 TGTCTGCTGTGTTTGATCCTGTA 59.929 43.478 0.00 0.00 0.00 2.74
5005 5467 3.433615 GTCTGCTGTGTTTGATCCTGTAC 59.566 47.826 0.00 0.00 0.00 2.90
5006 5468 2.744202 CTGCTGTGTTTGATCCTGTACC 59.256 50.000 0.00 0.00 0.00 3.34
5007 5469 2.084546 GCTGTGTTTGATCCTGTACCC 58.915 52.381 0.00 0.00 0.00 3.69
5008 5470 2.290323 GCTGTGTTTGATCCTGTACCCT 60.290 50.000 0.00 0.00 0.00 4.34
5009 5471 3.338249 CTGTGTTTGATCCTGTACCCTG 58.662 50.000 0.00 0.00 0.00 4.45
5010 5472 2.708861 TGTGTTTGATCCTGTACCCTGT 59.291 45.455 0.00 0.00 0.00 4.00
5011 5473 3.904965 TGTGTTTGATCCTGTACCCTGTA 59.095 43.478 0.00 0.00 0.00 2.74
5012 5474 4.020573 TGTGTTTGATCCTGTACCCTGTAG 60.021 45.833 0.00 0.00 0.00 2.74
5013 5475 4.020485 GTGTTTGATCCTGTACCCTGTAGT 60.020 45.833 0.00 0.00 0.00 2.73
5014 5476 4.595781 TGTTTGATCCTGTACCCTGTAGTT 59.404 41.667 0.00 0.00 0.00 2.24
5015 5477 5.072600 TGTTTGATCCTGTACCCTGTAGTTT 59.927 40.000 0.00 0.00 0.00 2.66
5016 5478 5.416271 TTGATCCTGTACCCTGTAGTTTC 57.584 43.478 0.00 0.00 0.00 2.78
5017 5479 4.684724 TGATCCTGTACCCTGTAGTTTCT 58.315 43.478 0.00 0.00 0.00 2.52
5018 5480 5.091552 TGATCCTGTACCCTGTAGTTTCTT 58.908 41.667 0.00 0.00 0.00 2.52
5019 5481 4.884668 TCCTGTACCCTGTAGTTTCTTG 57.115 45.455 0.00 0.00 0.00 3.02
5020 5482 4.485875 TCCTGTACCCTGTAGTTTCTTGA 58.514 43.478 0.00 0.00 0.00 3.02
5021 5483 5.091552 TCCTGTACCCTGTAGTTTCTTGAT 58.908 41.667 0.00 0.00 0.00 2.57
5022 5484 5.546499 TCCTGTACCCTGTAGTTTCTTGATT 59.454 40.000 0.00 0.00 0.00 2.57
5023 5485 5.875359 CCTGTACCCTGTAGTTTCTTGATTC 59.125 44.000 0.00 0.00 0.00 2.52
5024 5486 6.428083 TGTACCCTGTAGTTTCTTGATTCA 57.572 37.500 0.00 0.00 0.00 2.57
5025 5487 6.464222 TGTACCCTGTAGTTTCTTGATTCAG 58.536 40.000 0.00 0.00 0.00 3.02
5026 5488 4.911390 ACCCTGTAGTTTCTTGATTCAGG 58.089 43.478 0.00 0.00 40.13 3.86
5027 5489 3.691609 CCCTGTAGTTTCTTGATTCAGGC 59.308 47.826 0.00 0.00 39.41 4.85
5028 5490 3.691609 CCTGTAGTTTCTTGATTCAGGCC 59.308 47.826 0.00 0.00 35.37 5.19
5029 5491 4.566488 CCTGTAGTTTCTTGATTCAGGCCT 60.566 45.833 0.00 0.00 35.37 5.19
5030 5492 4.579869 TGTAGTTTCTTGATTCAGGCCTC 58.420 43.478 0.00 0.00 0.00 4.70
5031 5493 3.078891 AGTTTCTTGATTCAGGCCTCC 57.921 47.619 0.00 0.00 0.00 4.30
5032 5494 2.646798 AGTTTCTTGATTCAGGCCTCCT 59.353 45.455 0.00 0.00 0.00 3.69
5033 5495 3.075134 AGTTTCTTGATTCAGGCCTCCTT 59.925 43.478 0.00 0.00 0.00 3.36
5034 5496 3.814504 TTCTTGATTCAGGCCTCCTTT 57.185 42.857 0.00 0.00 0.00 3.11
5035 5497 3.077484 TCTTGATTCAGGCCTCCTTTG 57.923 47.619 0.00 0.00 0.00 2.77
5036 5498 2.097825 CTTGATTCAGGCCTCCTTTGG 58.902 52.381 0.00 0.00 0.00 3.28
5037 5499 1.075601 TGATTCAGGCCTCCTTTGGT 58.924 50.000 0.00 0.00 0.00 3.67
5038 5500 1.428912 TGATTCAGGCCTCCTTTGGTT 59.571 47.619 0.00 0.00 0.00 3.67
5039 5501 2.158325 TGATTCAGGCCTCCTTTGGTTT 60.158 45.455 0.00 0.00 0.00 3.27
5040 5502 3.075283 TGATTCAGGCCTCCTTTGGTTTA 59.925 43.478 0.00 0.00 0.00 2.01
5041 5503 3.825908 TTCAGGCCTCCTTTGGTTTAT 57.174 42.857 0.00 0.00 0.00 1.40
5042 5504 3.366052 TCAGGCCTCCTTTGGTTTATC 57.634 47.619 0.00 0.00 0.00 1.75
5043 5505 2.647299 TCAGGCCTCCTTTGGTTTATCA 59.353 45.455 0.00 0.00 0.00 2.15
5044 5506 3.269381 TCAGGCCTCCTTTGGTTTATCAT 59.731 43.478 0.00 0.00 0.00 2.45
5045 5507 3.382546 CAGGCCTCCTTTGGTTTATCATG 59.617 47.826 0.00 0.00 0.00 3.07
5046 5508 2.695147 GGCCTCCTTTGGTTTATCATGG 59.305 50.000 0.00 0.00 0.00 3.66
5047 5509 2.695147 GCCTCCTTTGGTTTATCATGGG 59.305 50.000 0.00 0.00 0.00 4.00
5048 5510 3.627237 GCCTCCTTTGGTTTATCATGGGA 60.627 47.826 0.00 0.00 0.00 4.37
5049 5511 4.609301 CCTCCTTTGGTTTATCATGGGAA 58.391 43.478 0.00 0.00 0.00 3.97
5050 5512 5.211201 CCTCCTTTGGTTTATCATGGGAAT 58.789 41.667 0.00 0.00 0.00 3.01
5051 5513 6.372931 CCTCCTTTGGTTTATCATGGGAATA 58.627 40.000 0.00 0.00 0.00 1.75
5052 5514 6.491403 CCTCCTTTGGTTTATCATGGGAATAG 59.509 42.308 0.00 0.00 0.00 1.73
5053 5515 6.372931 TCCTTTGGTTTATCATGGGAATAGG 58.627 40.000 0.00 0.00 0.00 2.57
5054 5516 6.161348 TCCTTTGGTTTATCATGGGAATAGGA 59.839 38.462 0.00 0.00 0.00 2.94
5055 5517 6.838612 CCTTTGGTTTATCATGGGAATAGGAA 59.161 38.462 0.00 0.00 0.00 3.36
5056 5518 7.344352 CCTTTGGTTTATCATGGGAATAGGAAA 59.656 37.037 0.00 0.00 0.00 3.13
5057 5519 8.671987 TTTGGTTTATCATGGGAATAGGAAAA 57.328 30.769 0.00 0.00 0.00 2.29
5058 5520 8.671987 TTGGTTTATCATGGGAATAGGAAAAA 57.328 30.769 0.00 0.00 0.00 1.94
5059 5521 8.852671 TGGTTTATCATGGGAATAGGAAAAAT 57.147 30.769 0.00 0.00 0.00 1.82
5060 5522 9.944079 TGGTTTATCATGGGAATAGGAAAAATA 57.056 29.630 0.00 0.00 0.00 1.40
5084 5546 9.764363 ATATATGAAGTGAAATGACATGTACGT 57.236 29.630 0.00 0.00 0.00 3.57
5085 5547 5.839262 TGAAGTGAAATGACATGTACGTC 57.161 39.130 0.00 0.54 36.40 4.34
5097 5559 7.346208 TGACATGTACGTCAAATTCTGTAAG 57.654 36.000 0.00 0.00 42.82 2.34
5098 5560 7.149307 TGACATGTACGTCAAATTCTGTAAGA 58.851 34.615 0.00 0.00 42.82 2.10
5099 5561 8.014322 GACATGTACGTCAAATTCTGTAAGAA 57.986 34.615 0.00 0.00 45.66 2.52
5100 5562 8.492748 GACATGTACGTCAAATTCTGTAAGAAA 58.507 33.333 0.00 0.00 45.16 2.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
73 75 0.647410 GTCGTGATCCGTGCATTCAG 59.353 55.000 0.00 0.00 37.94 3.02
76 78 2.452813 GCGTCGTGATCCGTGCATT 61.453 57.895 0.00 0.00 38.35 3.56
98 100 5.336849 GGTTGCTTGAGACATACACTACTCT 60.337 44.000 0.00 0.00 0.00 3.24
153 156 2.897972 GGTTCGACCCGCTATGGT 59.102 61.111 0.00 0.00 42.79 3.55
173 179 3.691342 TTCGGGGCTCCTCGTGTG 61.691 66.667 8.17 0.00 0.00 3.82
174 180 3.692406 GTTCGGGGCTCCTCGTGT 61.692 66.667 8.17 0.00 0.00 4.49
175 181 3.358076 GAGTTCGGGGCTCCTCGTG 62.358 68.421 8.17 0.00 0.00 4.35
176 182 3.069318 GAGTTCGGGGCTCCTCGT 61.069 66.667 8.17 0.00 0.00 4.18
177 183 2.352032 AAGAGTTCGGGGCTCCTCG 61.352 63.158 0.00 0.89 33.69 4.63
178 184 1.219393 CAAGAGTTCGGGGCTCCTC 59.781 63.158 0.00 0.00 33.69 3.71
179 185 1.536662 ACAAGAGTTCGGGGCTCCT 60.537 57.895 0.00 0.00 33.69 3.69
180 186 1.079057 GACAAGAGTTCGGGGCTCC 60.079 63.158 0.00 0.00 33.69 4.70
181 187 1.446272 CGACAAGAGTTCGGGGCTC 60.446 63.158 0.00 0.00 0.00 4.70
182 188 2.657237 CGACAAGAGTTCGGGGCT 59.343 61.111 0.00 0.00 0.00 5.19
188 194 1.737008 GGCCGACCGACAAGAGTTC 60.737 63.158 0.00 0.00 0.00 3.01
219 225 0.180642 GGTAAGGTTAGCAGGAGGGC 59.819 60.000 0.00 0.00 0.00 5.19
287 318 3.086600 CTGGGAGGGGGAGTGCTC 61.087 72.222 0.00 0.00 0.00 4.26
288 319 3.933542 GACTGGGAGGGGGAGTGCT 62.934 68.421 0.00 0.00 0.00 4.40
289 320 3.403558 GACTGGGAGGGGGAGTGC 61.404 72.222 0.00 0.00 0.00 4.40
290 321 2.509931 TACGACTGGGAGGGGGAGTG 62.510 65.000 0.00 0.00 0.00 3.51
291 322 1.807771 TTACGACTGGGAGGGGGAGT 61.808 60.000 0.00 0.00 0.00 3.85
292 323 0.616679 TTTACGACTGGGAGGGGGAG 60.617 60.000 0.00 0.00 0.00 4.30
293 324 0.906282 GTTTACGACTGGGAGGGGGA 60.906 60.000 0.00 0.00 0.00 4.81
294 325 1.196104 TGTTTACGACTGGGAGGGGG 61.196 60.000 0.00 0.00 0.00 5.40
295 326 0.688487 TTGTTTACGACTGGGAGGGG 59.312 55.000 0.00 0.00 0.00 4.79
296 327 1.804601 GTTGTTTACGACTGGGAGGG 58.195 55.000 0.00 0.00 0.00 4.30
327 358 1.672854 TAGGGGATTCGGCGTCAGTG 61.673 60.000 6.85 0.00 0.00 3.66
328 359 1.380785 TAGGGGATTCGGCGTCAGT 60.381 57.895 6.85 0.00 0.00 3.41
329 360 1.067582 GTAGGGGATTCGGCGTCAG 59.932 63.158 6.85 0.00 0.00 3.51
330 361 2.428925 GGTAGGGGATTCGGCGTCA 61.429 63.158 6.85 0.00 0.00 4.35
331 362 1.963464 TTGGTAGGGGATTCGGCGTC 61.963 60.000 6.85 0.00 0.00 5.19
332 363 1.555477 TTTGGTAGGGGATTCGGCGT 61.555 55.000 6.85 0.00 0.00 5.68
333 364 0.179029 ATTTGGTAGGGGATTCGGCG 60.179 55.000 0.00 0.00 0.00 6.46
334 365 1.605753 GATTTGGTAGGGGATTCGGC 58.394 55.000 0.00 0.00 0.00 5.54
335 366 1.202891 GGGATTTGGTAGGGGATTCGG 60.203 57.143 0.00 0.00 0.00 4.30
336 367 1.202891 GGGGATTTGGTAGGGGATTCG 60.203 57.143 0.00 0.00 0.00 3.34
337 368 1.202891 CGGGGATTTGGTAGGGGATTC 60.203 57.143 0.00 0.00 0.00 2.52
338 369 0.850784 CGGGGATTTGGTAGGGGATT 59.149 55.000 0.00 0.00 0.00 3.01
339 370 1.716028 GCGGGGATTTGGTAGGGGAT 61.716 60.000 0.00 0.00 0.00 3.85
340 371 2.380285 GCGGGGATTTGGTAGGGGA 61.380 63.158 0.00 0.00 0.00 4.81
412 443 3.545481 CTGGTGCGTGCGATCGAC 61.545 66.667 21.57 13.00 0.00 4.20
424 455 3.901797 GAGACCCCAACCGCTGGTG 62.902 68.421 0.94 0.00 44.76 4.17
425 456 3.637273 GAGACCCCAACCGCTGGT 61.637 66.667 1.58 0.00 44.76 4.00
426 457 4.760047 CGAGACCCCAACCGCTGG 62.760 72.222 0.00 0.00 45.97 4.85
452 483 0.387622 CAAAGTTGCCGCTGATGGTG 60.388 55.000 0.00 0.00 0.00 4.17
453 484 1.959085 CAAAGTTGCCGCTGATGGT 59.041 52.632 0.00 0.00 0.00 3.55
454 485 4.874534 CAAAGTTGCCGCTGATGG 57.125 55.556 0.00 0.00 0.00 3.51
490 522 4.735132 TACTCCGTGCAGTGCCGC 62.735 66.667 13.72 4.61 0.00 6.53
545 577 4.513198 TCCTTAAGGAAAACAATTGCCG 57.487 40.909 22.27 0.00 42.18 5.69
596 628 3.190738 ATCCCACCACACCACACCG 62.191 63.158 0.00 0.00 0.00 4.94
676 718 4.024984 CCTGTCCCTCCCCCTCCA 62.025 72.222 0.00 0.00 0.00 3.86
685 727 2.615191 TATAAGCGCCCCCTGTCCCT 62.615 60.000 2.29 0.00 0.00 4.20
686 728 1.702022 TTATAAGCGCCCCCTGTCCC 61.702 60.000 2.29 0.00 0.00 4.46
687 729 0.181824 TTTATAAGCGCCCCCTGTCC 59.818 55.000 2.29 0.00 0.00 4.02
688 730 2.271944 ATTTATAAGCGCCCCCTGTC 57.728 50.000 2.29 0.00 0.00 3.51
689 731 2.549349 CGTATTTATAAGCGCCCCCTGT 60.549 50.000 2.29 0.00 0.00 4.00
690 732 2.073816 CGTATTTATAAGCGCCCCCTG 58.926 52.381 2.29 0.00 0.00 4.45
691 733 1.002773 CCGTATTTATAAGCGCCCCCT 59.997 52.381 2.29 0.00 0.00 4.79
692 734 1.445871 CCGTATTTATAAGCGCCCCC 58.554 55.000 2.29 0.00 0.00 5.40
693 735 0.800631 GCCGTATTTATAAGCGCCCC 59.199 55.000 2.29 0.00 0.00 5.80
694 736 1.730612 GAGCCGTATTTATAAGCGCCC 59.269 52.381 2.29 0.00 0.00 6.13
713 755 1.207791 GAAAGCCCTCCCAGATCTGA 58.792 55.000 24.62 3.99 0.00 3.27
843 1102 3.662247 TCGAGGAAGGAAGTTGAGAAC 57.338 47.619 0.00 0.00 0.00 3.01
891 1158 2.791655 ACCCAAAACCTTCCGAGATTC 58.208 47.619 0.00 0.00 0.00 2.52
1093 1360 2.256764 CGATCAGATCCCGAGGCG 59.743 66.667 4.73 0.00 0.00 5.52
1096 1363 2.256764 CCGCGATCAGATCCCGAG 59.743 66.667 17.43 3.96 32.62 4.63
1132 1399 0.796312 AAATTAGCGCCAGTCGTGTG 59.204 50.000 2.29 0.00 41.07 3.82
1266 1533 2.066999 GCTAGGGGGTCTGGTCCTG 61.067 68.421 0.00 0.00 32.46 3.86
1274 1541 2.027653 GCTAGAATGATGCTAGGGGGTC 60.028 54.545 9.46 0.00 36.65 4.46
1275 1542 1.981495 GCTAGAATGATGCTAGGGGGT 59.019 52.381 9.46 0.00 36.65 4.95
1276 1543 2.027377 CAGCTAGAATGATGCTAGGGGG 60.027 54.545 9.46 0.00 36.65 5.40
1277 1544 2.636893 ACAGCTAGAATGATGCTAGGGG 59.363 50.000 9.46 0.00 36.65 4.79
1278 1545 4.348863 AACAGCTAGAATGATGCTAGGG 57.651 45.455 9.46 0.00 36.65 3.53
1280 1547 4.620609 CGCTAACAGCTAGAATGATGCTAG 59.379 45.833 2.92 2.92 39.60 3.42
1361 1641 0.759346 AGACCCACTCAGTTGGTGAC 59.241 55.000 5.00 0.00 31.48 3.67
1365 1645 4.559862 AATTCTAGACCCACTCAGTTGG 57.440 45.455 0.00 0.00 36.26 3.77
1366 1646 4.627467 CGAAATTCTAGACCCACTCAGTTG 59.373 45.833 0.00 0.00 0.00 3.16
1403 1683 1.270732 ACAAAGCAGCTCTCCACTCAG 60.271 52.381 0.00 0.00 0.00 3.35
1424 1704 1.153208 CACTGAGATCTGGCCTGGC 60.153 63.158 11.05 11.05 0.00 4.85
1506 1790 4.723309 AGAAATTGAGAGTGGAGCAAAGT 58.277 39.130 0.00 0.00 0.00 2.66
1509 1793 6.533730 TCTAAAGAAATTGAGAGTGGAGCAA 58.466 36.000 0.00 0.00 0.00 3.91
1524 1808 8.307483 CACTGGATCTCTGTAGTTCTAAAGAAA 58.693 37.037 2.01 0.00 35.58 2.52
1526 1810 6.378564 CCACTGGATCTCTGTAGTTCTAAAGA 59.621 42.308 0.00 0.58 0.00 2.52
1535 1819 3.464907 CATTGCCACTGGATCTCTGTAG 58.535 50.000 0.00 0.00 0.00 2.74
1572 1856 5.221702 TGACCTCACATTCTGAAACAGATCA 60.222 40.000 2.30 0.00 40.39 2.92
1634 1936 9.475620 TCCTAGAATAAAATAGTCACAGACTCA 57.524 33.333 2.48 0.00 42.40 3.41
1637 1939 9.315525 GGTTCCTAGAATAAAATAGTCACAGAC 57.684 37.037 0.00 0.00 0.00 3.51
1638 1940 9.268282 AGGTTCCTAGAATAAAATAGTCACAGA 57.732 33.333 0.00 0.00 0.00 3.41
1639 1941 9.535878 GAGGTTCCTAGAATAAAATAGTCACAG 57.464 37.037 0.00 0.00 0.00 3.66
1640 1942 8.483758 GGAGGTTCCTAGAATAAAATAGTCACA 58.516 37.037 0.00 0.00 32.53 3.58
1648 1950 6.733807 TCAGAAGGGAGGTTCCTAGAATAAAA 59.266 38.462 0.00 0.00 36.57 1.52
1651 1953 5.483174 TCAGAAGGGAGGTTCCTAGAATA 57.517 43.478 0.00 0.00 36.57 1.75
1662 1964 2.172082 TCTGCATGATTCAGAAGGGAGG 59.828 50.000 0.00 0.00 37.61 4.30
1663 1965 3.118334 ACTCTGCATGATTCAGAAGGGAG 60.118 47.826 0.00 0.00 39.77 4.30
1664 1966 2.842496 ACTCTGCATGATTCAGAAGGGA 59.158 45.455 0.00 0.00 39.77 4.20
1665 1967 2.943690 CACTCTGCATGATTCAGAAGGG 59.056 50.000 0.00 0.00 39.77 3.95
1666 1968 2.355132 GCACTCTGCATGATTCAGAAGG 59.645 50.000 0.00 0.00 44.26 3.46
1667 1969 3.677190 GCACTCTGCATGATTCAGAAG 57.323 47.619 0.00 0.00 44.26 2.85
1684 1986 2.931320 GCTCAGTACCACTAACAGGCAC 60.931 54.545 0.00 0.00 0.00 5.01
1711 2013 7.482169 AAATGTACTGAGAGAGGTGAACATA 57.518 36.000 0.00 0.00 0.00 2.29
1713 2015 5.808366 AAATGTACTGAGAGAGGTGAACA 57.192 39.130 0.00 0.00 0.00 3.18
1714 2016 8.603242 TTTTAAATGTACTGAGAGAGGTGAAC 57.397 34.615 0.00 0.00 0.00 3.18
1715 2017 9.052759 GTTTTTAAATGTACTGAGAGAGGTGAA 57.947 33.333 0.00 0.00 0.00 3.18
1716 2018 8.208224 TGTTTTTAAATGTACTGAGAGAGGTGA 58.792 33.333 0.00 0.00 0.00 4.02
1717 2019 8.378172 TGTTTTTAAATGTACTGAGAGAGGTG 57.622 34.615 0.00 0.00 0.00 4.00
1718 2020 8.429641 TCTGTTTTTAAATGTACTGAGAGAGGT 58.570 33.333 0.00 0.00 0.00 3.85
1719 2021 8.833231 TCTGTTTTTAAATGTACTGAGAGAGG 57.167 34.615 0.00 0.00 0.00 3.69
1720 2022 8.930760 CCTCTGTTTTTAAATGTACTGAGAGAG 58.069 37.037 21.11 13.26 38.24 3.20
1721 2023 7.878127 CCCTCTGTTTTTAAATGTACTGAGAGA 59.122 37.037 21.11 7.79 38.24 3.10
1722 2024 7.119846 CCCCTCTGTTTTTAAATGTACTGAGAG 59.880 40.741 21.11 14.27 38.24 3.20
1723 2025 6.940298 CCCCTCTGTTTTTAAATGTACTGAGA 59.060 38.462 21.11 8.45 38.24 3.27
1724 2026 6.715264 ACCCCTCTGTTTTTAAATGTACTGAG 59.285 38.462 16.78 16.78 36.75 3.35
1725 2027 6.488683 CACCCCTCTGTTTTTAAATGTACTGA 59.511 38.462 0.00 0.00 0.00 3.41
1726 2028 6.264518 ACACCCCTCTGTTTTTAAATGTACTG 59.735 38.462 0.00 0.00 0.00 2.74
1727 2029 6.370453 ACACCCCTCTGTTTTTAAATGTACT 58.630 36.000 0.00 0.00 0.00 2.73
1728 2030 6.644248 ACACCCCTCTGTTTTTAAATGTAC 57.356 37.500 0.00 0.00 0.00 2.90
1729 2031 7.446013 CAGTACACCCCTCTGTTTTTAAATGTA 59.554 37.037 0.00 0.00 0.00 2.29
1730 2032 6.264518 CAGTACACCCCTCTGTTTTTAAATGT 59.735 38.462 0.00 0.00 0.00 2.71
1731 2033 6.264518 ACAGTACACCCCTCTGTTTTTAAATG 59.735 38.462 0.00 0.00 39.00 2.32
1732 2034 6.370453 ACAGTACACCCCTCTGTTTTTAAAT 58.630 36.000 0.00 0.00 39.00 1.40
1733 2035 5.757988 ACAGTACACCCCTCTGTTTTTAAA 58.242 37.500 0.00 0.00 39.00 1.52
1734 2036 5.376756 ACAGTACACCCCTCTGTTTTTAA 57.623 39.130 0.00 0.00 39.00 1.52
1735 2037 5.376756 AACAGTACACCCCTCTGTTTTTA 57.623 39.130 0.00 0.00 45.97 1.52
1736 2038 3.945640 ACAGTACACCCCTCTGTTTTT 57.054 42.857 0.00 0.00 39.00 1.94
1737 2039 3.945640 AACAGTACACCCCTCTGTTTT 57.054 42.857 0.00 0.00 45.97 2.43
1740 2042 4.426704 AGATAAACAGTACACCCCTCTGT 58.573 43.478 0.00 0.00 43.04 3.41
1741 2043 5.421056 TGTAGATAAACAGTACACCCCTCTG 59.579 44.000 0.00 0.00 35.60 3.35
1742 2044 5.586877 TGTAGATAAACAGTACACCCCTCT 58.413 41.667 0.00 0.00 0.00 3.69
1743 2045 5.927281 TGTAGATAAACAGTACACCCCTC 57.073 43.478 0.00 0.00 0.00 4.30
1744 2046 6.886178 ATTGTAGATAAACAGTACACCCCT 57.114 37.500 0.00 0.00 0.00 4.79
1745 2047 7.336396 AGAATTGTAGATAAACAGTACACCCC 58.664 38.462 0.00 0.00 0.00 4.95
1746 2048 9.310716 GTAGAATTGTAGATAAACAGTACACCC 57.689 37.037 0.00 0.00 0.00 4.61
1747 2049 9.865321 TGTAGAATTGTAGATAAACAGTACACC 57.135 33.333 0.00 0.00 0.00 4.16
1759 2061 8.147058 AGCTTCGAATCATGTAGAATTGTAGAT 58.853 33.333 0.00 0.00 0.00 1.98
1760 2062 7.492524 AGCTTCGAATCATGTAGAATTGTAGA 58.507 34.615 0.00 0.00 0.00 2.59
1780 2082 2.035193 TCTACATGATGAGCCGAGCTTC 59.965 50.000 0.00 0.00 39.88 3.86
1785 2087 4.100035 ACTGAATTCTACATGATGAGCCGA 59.900 41.667 7.05 0.00 0.00 5.54
1786 2088 4.210746 CACTGAATTCTACATGATGAGCCG 59.789 45.833 7.05 0.00 0.00 5.52
1787 2089 5.121811 ACACTGAATTCTACATGATGAGCC 58.878 41.667 7.05 0.00 0.00 4.70
1788 2090 6.093219 ACAACACTGAATTCTACATGATGAGC 59.907 38.462 7.05 0.00 0.00 4.26
1789 2091 7.606858 ACAACACTGAATTCTACATGATGAG 57.393 36.000 7.05 0.00 0.00 2.90
1790 2092 7.984422 AACAACACTGAATTCTACATGATGA 57.016 32.000 7.05 0.00 0.00 2.92
1791 2093 8.939929 AGTAACAACACTGAATTCTACATGATG 58.060 33.333 7.05 7.14 0.00 3.07
1796 2098 7.875554 TGCATAGTAACAACACTGAATTCTACA 59.124 33.333 7.05 0.00 0.00 2.74
1797 2099 8.251750 TGCATAGTAACAACACTGAATTCTAC 57.748 34.615 7.05 0.00 0.00 2.59
1798 2100 8.094548 ACTGCATAGTAACAACACTGAATTCTA 58.905 33.333 7.05 0.00 34.74 2.10
1799 2101 6.936900 ACTGCATAGTAACAACACTGAATTCT 59.063 34.615 7.05 0.00 34.74 2.40
1800 2102 7.133891 ACTGCATAGTAACAACACTGAATTC 57.866 36.000 0.00 0.00 34.74 2.17
1824 2126 7.282224 ACATTTGCTAAGTTTGTCTGTACAGAA 59.718 33.333 26.74 14.24 39.48 3.02
1868 2170 5.163416 ACAATGACCTGAACCAAAAAGAAGG 60.163 40.000 0.00 0.00 0.00 3.46
2011 2314 4.529897 CCACATGGAAAGGAGATGATTCA 58.470 43.478 0.00 0.00 37.39 2.57
2014 2317 2.512896 AGCCACATGGAAAGGAGATGAT 59.487 45.455 0.87 0.00 37.39 2.45
2022 2325 8.225603 ACAAAATAGTATAGCCACATGGAAAG 57.774 34.615 0.87 0.00 37.39 2.62
2310 2614 8.478877 GGATGTCCTTTCTATCTAGAACAGAAA 58.521 37.037 22.14 22.14 41.64 2.52
2333 2698 6.881065 AGCGAAGTGTATAAATATGCATGGAT 59.119 34.615 10.16 4.68 31.18 3.41
2428 2795 2.982470 GAGCATTGCAGCACAAGTTAAC 59.018 45.455 11.91 0.00 42.87 2.01
2516 2890 2.104111 AGTGGTTCGGTGACATCTGAAA 59.896 45.455 2.21 0.00 34.98 2.69
2796 3171 4.906065 TTCATTTCTGCCATGATACTGC 57.094 40.909 0.00 0.00 30.63 4.40
3152 3529 7.929785 AGACTTATTGAAGGACGAACAAACTAA 59.070 33.333 0.00 0.00 36.95 2.24
3162 3539 3.846360 ACCGAAGACTTATTGAAGGACG 58.154 45.455 0.00 0.00 36.95 4.79
3275 3653 1.327460 CTAACAACACGGCCATCATCG 59.673 52.381 2.24 0.00 0.00 3.84
3340 3718 3.748048 TCTGGACGCAAGATCAGAAAAAG 59.252 43.478 0.00 0.00 42.88 2.27
3355 3737 2.699954 AGCACCAAAACTATCTGGACG 58.300 47.619 0.00 0.00 36.49 4.79
3364 3753 8.956533 AATTACAACAAATAAGCACCAAAACT 57.043 26.923 0.00 0.00 0.00 2.66
3383 3772 5.238432 CAGTGCTTCACCACTACAAATTACA 59.762 40.000 0.00 0.00 43.85 2.41
3501 3891 2.948979 GTGACCATCCACAGTTTTGACA 59.051 45.455 0.00 0.00 37.04 3.58
3533 3923 7.335055 CATTGACCTGCATTGAAATGGTACAC 61.335 42.308 5.25 0.00 36.90 2.90
3534 3924 5.336610 CATTGACCTGCATTGAAATGGTACA 60.337 40.000 5.25 0.00 36.90 2.90
3650 4040 0.858583 GCGCGTTGCCAAAGATTTTT 59.141 45.000 8.43 0.00 37.76 1.94
3651 4041 2.516486 GCGCGTTGCCAAAGATTTT 58.484 47.368 8.43 0.00 37.76 1.82
3652 4042 4.243383 GCGCGTTGCCAAAGATTT 57.757 50.000 8.43 0.00 37.76 2.17
3711 4101 2.154462 CCAGTTCATCACCACAGGAAC 58.846 52.381 0.00 0.00 39.83 3.62
3814 4212 5.880054 AAAAGGTTGGATGTAATGAGTCG 57.120 39.130 0.00 0.00 0.00 4.18
3823 4221 6.048732 ACTTGAAACAAAAAGGTTGGATGT 57.951 33.333 0.00 0.00 0.00 3.06
4111 4510 1.614226 CCAAACGTAGGGAGGGGGA 60.614 63.158 0.00 0.00 0.00 4.81
4286 4685 2.093152 CGACGGTAATACAAACAGCCAC 59.907 50.000 0.00 0.00 0.00 5.01
4376 4775 1.946745 AACAAACCCAAAATGGCACG 58.053 45.000 0.00 0.00 35.79 5.34
4408 4809 5.061853 GCATCAGAGAAATATCTTGGCAGA 58.938 41.667 0.00 0.00 35.54 4.26
4413 4814 5.298527 TGGCAAGCATCAGAGAAATATCTTG 59.701 40.000 0.00 0.00 35.54 3.02
4434 4835 3.421844 ACAAGAAATAGGACCACTTGGC 58.578 45.455 0.00 0.00 41.15 4.52
4435 4836 4.911390 AGACAAGAAATAGGACCACTTGG 58.089 43.478 0.00 0.00 41.15 3.61
4438 4839 9.014297 CAAATAAAGACAAGAAATAGGACCACT 57.986 33.333 0.00 0.00 0.00 4.00
4441 4842 9.841880 GAACAAATAAAGACAAGAAATAGGACC 57.158 33.333 0.00 0.00 0.00 4.46
4444 4845 8.802267 TGGGAACAAATAAAGACAAGAAATAGG 58.198 33.333 0.00 0.00 37.44 2.57
4474 4875 2.029918 CCGCCTCTTTTCCAAAGAAAGG 60.030 50.000 0.83 1.35 42.78 3.11
4475 4876 2.608016 GCCGCCTCTTTTCCAAAGAAAG 60.608 50.000 0.83 0.00 42.78 2.62
4476 4877 1.339929 GCCGCCTCTTTTCCAAAGAAA 59.660 47.619 0.83 0.00 40.26 2.52
4477 4878 0.958822 GCCGCCTCTTTTCCAAAGAA 59.041 50.000 0.83 0.00 0.00 2.52
4478 4879 0.179004 TGCCGCCTCTTTTCCAAAGA 60.179 50.000 0.00 0.00 0.00 2.52
4479 4880 0.673437 TTGCCGCCTCTTTTCCAAAG 59.327 50.000 0.00 0.00 0.00 2.77
4486 4887 2.991540 GCCCTTTGCCGCCTCTTT 60.992 61.111 0.00 0.00 0.00 2.52
4500 4901 5.985530 GCTTGATAATGAATAAAAGGTGCCC 59.014 40.000 0.00 0.00 0.00 5.36
4539 4946 6.238759 GGCAATCAATATGTAAAGGAGTGTCC 60.239 42.308 0.00 0.00 36.58 4.02
4550 4957 9.806203 CTTTCAAAGATTGGCAATCAATATGTA 57.194 29.630 34.54 20.21 45.36 2.29
4557 4989 4.603989 TGCTTTCAAAGATTGGCAATCA 57.396 36.364 34.54 16.64 40.42 2.57
4558 4990 5.751990 CCTATGCTTTCAAAGATTGGCAATC 59.248 40.000 28.54 28.54 38.20 2.67
4559 4991 5.422970 TCCTATGCTTTCAAAGATTGGCAAT 59.577 36.000 13.54 13.54 31.06 3.56
4560 4992 4.771577 TCCTATGCTTTCAAAGATTGGCAA 59.228 37.500 0.68 0.68 31.06 4.52
4561 4993 4.158394 GTCCTATGCTTTCAAAGATTGGCA 59.842 41.667 0.00 0.00 31.65 4.92
4562 4994 4.158394 TGTCCTATGCTTTCAAAGATTGGC 59.842 41.667 0.00 1.14 0.00 4.52
4564 4996 6.149973 TCAGTGTCCTATGCTTTCAAAGATTG 59.850 38.462 0.00 0.00 0.00 2.67
4565 4997 6.240894 TCAGTGTCCTATGCTTTCAAAGATT 58.759 36.000 0.00 0.00 0.00 2.40
4566 4998 5.809001 TCAGTGTCCTATGCTTTCAAAGAT 58.191 37.500 0.00 0.00 0.00 2.40
4567 4999 5.227569 TCAGTGTCCTATGCTTTCAAAGA 57.772 39.130 0.00 0.00 0.00 2.52
4568 5000 5.645067 TGATCAGTGTCCTATGCTTTCAAAG 59.355 40.000 0.00 0.00 0.00 2.77
4569 5001 5.559770 TGATCAGTGTCCTATGCTTTCAAA 58.440 37.500 0.00 0.00 0.00 2.69
4570 5002 5.164620 TGATCAGTGTCCTATGCTTTCAA 57.835 39.130 0.00 0.00 0.00 2.69
4571 5003 4.223700 ACTGATCAGTGTCCTATGCTTTCA 59.776 41.667 27.37 0.00 40.75 2.69
4572 5004 4.764172 ACTGATCAGTGTCCTATGCTTTC 58.236 43.478 27.37 0.00 40.75 2.62
4573 5005 4.223700 TGACTGATCAGTGTCCTATGCTTT 59.776 41.667 32.50 3.02 42.66 3.51
4574 5006 3.771479 TGACTGATCAGTGTCCTATGCTT 59.229 43.478 32.50 3.24 42.66 3.91
4575 5007 3.131933 GTGACTGATCAGTGTCCTATGCT 59.868 47.826 32.50 3.81 42.66 3.79
4576 5008 3.452474 GTGACTGATCAGTGTCCTATGC 58.548 50.000 32.50 15.51 42.66 3.14
4577 5009 3.703556 AGGTGACTGATCAGTGTCCTATG 59.296 47.826 32.50 1.91 42.66 2.23
4578 5010 3.987745 AGGTGACTGATCAGTGTCCTAT 58.012 45.455 32.50 15.27 42.66 2.57
4579 5011 3.458044 AGGTGACTGATCAGTGTCCTA 57.542 47.619 32.50 10.63 42.66 2.94
4580 5012 2.317371 AGGTGACTGATCAGTGTCCT 57.683 50.000 32.50 30.04 42.66 3.85
4592 5024 2.834549 AGCTTAGCACATACAGGTGACT 59.165 45.455 7.07 0.00 41.32 3.41
4593 5025 3.252974 AGCTTAGCACATACAGGTGAC 57.747 47.619 7.07 0.00 41.32 3.67
4630 5062 2.955660 CAGACAAGGTAGTGGGCAAAAA 59.044 45.455 0.00 0.00 0.00 1.94
4658 5090 3.713902 CTGTGTCCCAGAAGCAAGT 57.286 52.632 0.00 0.00 44.49 3.16
4669 5114 4.065789 CAAGGAACCTTAACTCTGTGTCC 58.934 47.826 5.75 0.00 34.50 4.02
4671 5116 3.458487 ACCAAGGAACCTTAACTCTGTGT 59.542 43.478 5.75 0.00 34.50 3.72
4710 5155 6.849502 ACAGCAAACATGAATGAAGATACAG 58.150 36.000 0.00 0.00 0.00 2.74
4717 5162 4.370049 CCACAACAGCAAACATGAATGAA 58.630 39.130 0.00 0.00 0.00 2.57
4718 5163 3.799574 GCCACAACAGCAAACATGAATGA 60.800 43.478 0.00 0.00 0.00 2.57
4719 5164 2.477375 GCCACAACAGCAAACATGAATG 59.523 45.455 0.00 0.00 0.00 2.67
4738 5183 6.225981 ACATTGGGAGAATATTTCTTTGCC 57.774 37.500 0.00 0.00 40.87 4.52
4749 5194 0.929244 CCCCTGGACATTGGGAGAAT 59.071 55.000 0.00 0.00 46.15 2.40
4751 5196 1.163309 ACCCCTGGACATTGGGAGA 59.837 57.895 12.46 0.00 46.15 3.71
4761 5223 5.373222 CGAAATATTATTCACACCCCTGGA 58.627 41.667 0.00 0.00 0.00 3.86
4769 5231 2.349060 GCGCCGCGAAATATTATTCACA 60.349 45.455 18.91 0.00 0.00 3.58
4770 5232 2.096417 AGCGCCGCGAAATATTATTCAC 60.096 45.455 18.91 0.00 0.00 3.18
4771 5233 2.096466 CAGCGCCGCGAAATATTATTCA 60.096 45.455 18.91 0.00 0.00 2.57
4775 5237 0.878523 AGCAGCGCCGCGAAATATTA 60.879 50.000 18.91 0.00 36.85 0.98
4784 5246 3.124921 TAAAGGAAGCAGCGCCGC 61.125 61.111 7.75 7.75 0.00 6.53
4787 5249 1.796796 CTGGTAAAGGAAGCAGCGC 59.203 57.895 0.00 0.00 38.08 5.92
4795 5257 7.893590 TGGATAATCCGACCCTGGTAAAGGA 62.894 48.000 9.24 9.24 44.22 3.36
4800 5262 2.322658 GTGGATAATCCGACCCTGGTA 58.677 52.381 0.00 0.00 40.17 3.25
4810 5272 4.443598 GGTCACTCTTCTGGTGGATAATCC 60.444 50.000 0.00 0.00 36.96 3.01
4826 5288 1.552337 TCAGATGCAAGGAGGTCACTC 59.448 52.381 0.00 0.00 43.20 3.51
4828 5290 2.479566 TTCAGATGCAAGGAGGTCAC 57.520 50.000 0.00 0.00 0.00 3.67
4835 5297 5.935789 ACAATTTCCAAATTCAGATGCAAGG 59.064 36.000 0.00 0.00 36.52 3.61
4885 5347 0.178068 TCCCGATTACAAGCAGAGGC 59.822 55.000 0.00 0.00 41.61 4.70
4899 5361 0.246086 GCAAACATGGCATTTCCCGA 59.754 50.000 0.00 0.00 0.00 5.14
4900 5362 0.740516 GGCAAACATGGCATTTCCCG 60.741 55.000 0.00 0.00 0.00 5.14
4967 5429 8.840321 ACACAGCAGACATTGGAATAAATATAC 58.160 33.333 0.00 0.00 0.00 1.47
4973 5435 5.534278 TCAAACACAGCAGACATTGGAATAA 59.466 36.000 0.00 0.00 0.00 1.40
4978 5440 3.366679 GGATCAAACACAGCAGACATTGG 60.367 47.826 0.00 0.00 0.00 3.16
4984 5446 2.936919 ACAGGATCAAACACAGCAGA 57.063 45.000 0.00 0.00 0.00 4.26
4990 5452 3.418684 ACAGGGTACAGGATCAAACAC 57.581 47.619 0.00 0.00 0.00 3.32
4993 5455 5.546499 AGAAACTACAGGGTACAGGATCAAA 59.454 40.000 0.00 0.00 0.00 2.69
5003 5465 5.570844 GCCTGAATCAAGAAACTACAGGGTA 60.571 44.000 0.00 0.00 42.20 3.69
5004 5466 4.807643 GCCTGAATCAAGAAACTACAGGGT 60.808 45.833 0.00 0.00 42.20 4.34
5005 5467 3.691609 GCCTGAATCAAGAAACTACAGGG 59.308 47.826 0.00 0.00 42.20 4.45
5006 5468 3.691609 GGCCTGAATCAAGAAACTACAGG 59.308 47.826 0.00 0.00 43.98 4.00
5007 5469 4.583871 AGGCCTGAATCAAGAAACTACAG 58.416 43.478 3.11 0.00 0.00 2.74
5008 5470 4.565652 GGAGGCCTGAATCAAGAAACTACA 60.566 45.833 12.00 0.00 0.00 2.74
5009 5471 3.942115 GGAGGCCTGAATCAAGAAACTAC 59.058 47.826 12.00 0.00 0.00 2.73
5010 5472 3.846588 AGGAGGCCTGAATCAAGAAACTA 59.153 43.478 12.00 0.00 29.57 2.24
5011 5473 2.646798 AGGAGGCCTGAATCAAGAAACT 59.353 45.455 12.00 0.00 29.57 2.66
5012 5474 3.078891 AGGAGGCCTGAATCAAGAAAC 57.921 47.619 12.00 0.00 29.57 2.78
5013 5475 3.814504 AAGGAGGCCTGAATCAAGAAA 57.185 42.857 12.00 0.00 32.13 2.52
5014 5476 3.424703 CAAAGGAGGCCTGAATCAAGAA 58.575 45.455 12.00 0.00 32.13 2.52
5015 5477 2.291153 CCAAAGGAGGCCTGAATCAAGA 60.291 50.000 12.00 0.00 32.13 3.02
5016 5478 2.097825 CCAAAGGAGGCCTGAATCAAG 58.902 52.381 12.00 0.00 32.13 3.02
5017 5479 1.428912 ACCAAAGGAGGCCTGAATCAA 59.571 47.619 12.00 0.00 32.13 2.57
5018 5480 1.075601 ACCAAAGGAGGCCTGAATCA 58.924 50.000 12.00 0.00 32.13 2.57
5019 5481 2.222227 AACCAAAGGAGGCCTGAATC 57.778 50.000 12.00 0.00 32.13 2.52
5020 5482 2.702270 AAACCAAAGGAGGCCTGAAT 57.298 45.000 12.00 0.00 32.13 2.57
5021 5483 3.075283 TGATAAACCAAAGGAGGCCTGAA 59.925 43.478 12.00 0.00 32.13 3.02
5022 5484 2.647299 TGATAAACCAAAGGAGGCCTGA 59.353 45.455 12.00 0.00 32.13 3.86
5023 5485 3.085952 TGATAAACCAAAGGAGGCCTG 57.914 47.619 12.00 0.00 32.13 4.85
5024 5486 3.628257 CCATGATAAACCAAAGGAGGCCT 60.628 47.826 3.86 3.86 33.87 5.19
5025 5487 2.695147 CCATGATAAACCAAAGGAGGCC 59.305 50.000 0.00 0.00 0.00 5.19
5026 5488 2.695147 CCCATGATAAACCAAAGGAGGC 59.305 50.000 0.00 0.00 0.00 4.70
5027 5489 4.249638 TCCCATGATAAACCAAAGGAGG 57.750 45.455 0.00 0.00 0.00 4.30
5028 5490 6.491403 CCTATTCCCATGATAAACCAAAGGAG 59.509 42.308 0.00 0.00 0.00 3.69
5029 5491 6.161348 TCCTATTCCCATGATAAACCAAAGGA 59.839 38.462 0.00 0.00 0.00 3.36
5030 5492 6.372931 TCCTATTCCCATGATAAACCAAAGG 58.627 40.000 0.00 0.00 0.00 3.11
5031 5493 7.896383 TTCCTATTCCCATGATAAACCAAAG 57.104 36.000 0.00 0.00 0.00 2.77
5032 5494 8.671987 TTTTCCTATTCCCATGATAAACCAAA 57.328 30.769 0.00 0.00 0.00 3.28
5033 5495 8.671987 TTTTTCCTATTCCCATGATAAACCAA 57.328 30.769 0.00 0.00 0.00 3.67
5034 5496 8.852671 ATTTTTCCTATTCCCATGATAAACCA 57.147 30.769 0.00 0.00 0.00 3.67
5058 5520 9.764363 ACGTACATGTCATTTCACTTCATATAT 57.236 29.630 0.00 0.00 0.00 0.86
5059 5521 9.244799 GACGTACATGTCATTTCACTTCATATA 57.755 33.333 0.00 0.00 38.75 0.86
5060 5522 7.763985 TGACGTACATGTCATTTCACTTCATAT 59.236 33.333 0.00 0.00 43.62 1.78
5061 5523 7.093992 TGACGTACATGTCATTTCACTTCATA 58.906 34.615 0.00 0.00 43.62 2.15
5062 5524 5.931724 TGACGTACATGTCATTTCACTTCAT 59.068 36.000 0.00 0.00 43.62 2.57
5063 5525 5.293560 TGACGTACATGTCATTTCACTTCA 58.706 37.500 0.00 0.03 43.62 3.02
5064 5526 5.839262 TGACGTACATGTCATTTCACTTC 57.161 39.130 0.00 0.00 43.62 3.01
5073 5535 7.149307 TCTTACAGAATTTGACGTACATGTCA 58.851 34.615 0.00 0.06 46.63 3.58
5074 5536 7.576750 TCTTACAGAATTTGACGTACATGTC 57.423 36.000 0.00 0.00 39.37 3.06
5075 5537 7.956420 TTCTTACAGAATTTGACGTACATGT 57.044 32.000 2.69 2.69 0.00 3.21
5076 5538 9.318041 CTTTTCTTACAGAATTTGACGTACATG 57.682 33.333 0.00 0.00 33.67 3.21
5077 5539 9.268268 TCTTTTCTTACAGAATTTGACGTACAT 57.732 29.630 0.00 0.00 33.67 2.29
5078 5540 8.651391 TCTTTTCTTACAGAATTTGACGTACA 57.349 30.769 0.00 0.00 33.67 2.90
5079 5541 8.975439 TCTCTTTTCTTACAGAATTTGACGTAC 58.025 33.333 0.00 0.00 33.67 3.67
5080 5542 9.706691 ATCTCTTTTCTTACAGAATTTGACGTA 57.293 29.630 0.00 0.00 33.67 3.57
5081 5543 8.499162 CATCTCTTTTCTTACAGAATTTGACGT 58.501 33.333 0.00 0.00 33.67 4.34
5082 5544 8.499162 ACATCTCTTTTCTTACAGAATTTGACG 58.501 33.333 0.00 0.00 33.67 4.35
5083 5545 9.604626 CACATCTCTTTTCTTACAGAATTTGAC 57.395 33.333 0.00 0.00 33.67 3.18
5084 5546 9.559732 TCACATCTCTTTTCTTACAGAATTTGA 57.440 29.630 0.00 0.00 33.67 2.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.