Multiple sequence alignment - TraesCS4A01G097800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G097800 chr4A 100.000 3377 0 0 1 3377 108873939 108870563 0.000000e+00 6237.0
1 TraesCS4A01G097800 chr4A 89.412 85 9 0 430 514 453679904 453679988 1.280000e-19 108.0
2 TraesCS4A01G097800 chr4B 94.201 2811 65 32 511 3280 440045563 440048316 0.000000e+00 4198.0
3 TraesCS4A01G097800 chr4B 89.412 85 9 0 430 514 426774421 426774337 1.280000e-19 108.0
4 TraesCS4A01G097800 chr4D 95.197 2665 61 28 730 3377 356561607 356564221 0.000000e+00 4150.0
5 TraesCS4A01G097800 chr4D 92.806 278 18 2 155 432 117211076 117210801 5.250000e-108 401.0
6 TraesCS4A01G097800 chr4D 94.886 176 5 4 610 782 356561448 356561622 4.290000e-69 272.0
7 TraesCS4A01G097800 chr4D 91.803 122 9 1 511 631 356561163 356561284 5.800000e-38 169.0
8 TraesCS4A01G097800 chr4D 83.453 139 23 0 1500 1638 54127481 54127343 2.730000e-26 130.0
9 TraesCS4A01G097800 chr4D 82.609 92 16 0 1524 1615 455893081 455893172 7.770000e-12 82.4
10 TraesCS4A01G097800 chr5A 95.402 261 12 0 172 432 642209700 642209960 1.870000e-112 416.0
11 TraesCS4A01G097800 chr5A 95.000 260 13 0 172 431 550651359 550651100 3.140000e-110 409.0
12 TraesCS4A01G097800 chr5A 77.101 476 92 14 48 512 599553555 599553086 3.340000e-65 259.0
13 TraesCS4A01G097800 chr5A 90.588 85 8 0 430 514 592304227 592304143 2.750000e-21 113.0
14 TraesCS4A01G097800 chr6D 95.038 262 12 1 172 433 160793771 160794031 8.720000e-111 411.0
15 TraesCS4A01G097800 chr6D 86.047 172 20 4 1479 1648 378379463 378379294 7.440000e-42 182.0
16 TraesCS4A01G097800 chr6D 85.119 168 23 2 1494 1660 358326165 358325999 1.610000e-38 171.0
17 TraesCS4A01G097800 chr6D 82.418 182 28 4 1462 1641 334227669 334227490 4.510000e-34 156.0
18 TraesCS4A01G097800 chr2D 94.656 262 14 0 172 433 169117478 169117217 1.130000e-109 407.0
19 TraesCS4A01G097800 chr2D 85.714 161 23 0 1502 1662 203452305 203452145 1.610000e-38 171.0
20 TraesCS4A01G097800 chr2D 83.799 179 27 2 1485 1662 32763253 32763430 5.800000e-38 169.0
21 TraesCS4A01G097800 chr2D 84.524 168 19 4 15 175 46214102 46214269 3.490000e-35 159.0
22 TraesCS4A01G097800 chr2D 89.535 86 9 0 430 515 26439307 26439222 3.560000e-20 110.0
23 TraesCS4A01G097800 chr3D 93.680 269 15 2 164 431 168354897 168354630 5.250000e-108 401.0
24 TraesCS4A01G097800 chr3D 88.177 203 24 0 1445 1647 610544050 610544252 3.370000e-60 243.0
25 TraesCS4A01G097800 chr3D 84.422 199 27 3 1454 1650 613806079 613805883 3.440000e-45 193.0
26 TraesCS4A01G097800 chr3D 87.857 140 17 0 1502 1641 61703549 61703410 7.500000e-37 165.0
27 TraesCS4A01G097800 chr3D 85.577 104 15 0 411 514 496684318 496684421 3.560000e-20 110.0
28 TraesCS4A01G097800 chr3A 92.806 278 16 4 161 435 116359073 116359349 1.890000e-107 399.0
29 TraesCS4A01G097800 chr3A 93.066 274 18 1 165 437 166486042 166486315 1.890000e-107 399.0
30 TraesCS4A01G097800 chr3A 87.685 203 25 0 1445 1647 744879520 744879722 1.570000e-58 237.0
31 TraesCS4A01G097800 chr3A 76.033 484 87 20 48 514 531628289 531628760 1.220000e-54 224.0
32 TraesCS4A01G097800 chr3A 85.279 197 29 0 1454 1650 750298743 750298547 1.590000e-48 204.0
33 TraesCS4A01G097800 chr3A 83.333 102 14 1 419 517 688592716 688592615 1.290000e-14 91.6
34 TraesCS4A01G097800 chr5D 92.780 277 16 4 162 434 321547756 321547480 6.790000e-107 398.0
35 TraesCS4A01G097800 chr5D 83.784 148 22 2 1502 1648 475382339 475382485 4.540000e-29 139.0
36 TraesCS4A01G097800 chr5D 80.247 162 32 0 1502 1663 251064170 251064009 4.580000e-24 122.0
37 TraesCS4A01G097800 chr3B 88.177 203 24 0 1445 1647 828111450 828111652 3.370000e-60 243.0
38 TraesCS4A01G097800 chr3B 84.951 206 31 0 1438 1643 675649883 675650088 3.410000e-50 209.0
39 TraesCS4A01G097800 chr3B 85.897 156 18 2 24 175 736018124 736018279 2.700000e-36 163.0
40 TraesCS4A01G097800 chr3B 84.472 161 20 3 20 175 73745667 73745507 1.620000e-33 154.0
41 TraesCS4A01G097800 chr3B 88.172 93 10 1 430 522 144219551 144219642 3.560000e-20 110.0
42 TraesCS4A01G097800 chr6A 86.628 172 19 4 1479 1648 520355733 520355564 1.600000e-43 187.0
43 TraesCS4A01G097800 chr6A 83.696 184 28 2 1478 1660 500083800 500083618 4.480000e-39 172.0
44 TraesCS4A01G097800 chr6A 81.868 182 29 4 1462 1641 473575573 473575394 2.100000e-32 150.0
45 TraesCS4A01G097800 chr6A 80.769 104 20 0 411 514 534680190 534680293 7.770000e-12 82.4
46 TraesCS4A01G097800 chr6B 85.965 171 20 4 1479 1647 564993621 564993453 2.680000e-41 180.0
47 TraesCS4A01G097800 chr6B 84.239 184 27 2 1478 1660 539727725 539727543 9.630000e-41 178.0
48 TraesCS4A01G097800 chr7B 86.538 156 17 2 24 175 733476527 733476372 5.800000e-38 169.0
49 TraesCS4A01G097800 chr7B 85.256 156 19 2 24 175 100018963 100019118 1.250000e-34 158.0
50 TraesCS4A01G097800 chr7D 85.542 166 17 4 15 173 263700619 263700784 2.080000e-37 167.0
51 TraesCS4A01G097800 chr2A 86.364 154 17 2 24 173 773798660 773798507 7.500000e-37 165.0
52 TraesCS4A01G097800 chr5B 85.256 156 19 2 24 175 374453715 374453870 1.250000e-34 158.0
53 TraesCS4A01G097800 chr1D 81.707 164 28 2 1486 1648 370342119 370342281 5.880000e-28 135.0
54 TraesCS4A01G097800 chr1D 79.508 122 23 2 1500 1620 241267535 241267655 6.000000e-13 86.1
55 TraesCS4A01G097800 chr1A 81.707 164 28 2 1486 1648 469309800 469309962 5.880000e-28 135.0
56 TraesCS4A01G097800 chr1A 81.148 122 21 2 1500 1620 306150301 306150421 2.770000e-16 97.1
57 TraesCS4A01G097800 chr7A 88.043 92 10 1 430 520 487312585 487312676 1.280000e-19 108.0
58 TraesCS4A01G097800 chr1B 89.412 85 9 0 430 514 432442354 432442438 1.280000e-19 108.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G097800 chr4A 108870563 108873939 3376 True 6237.000000 6237 100.000 1 3377 1 chr4A.!!$R1 3376
1 TraesCS4A01G097800 chr4B 440045563 440048316 2753 False 4198.000000 4198 94.201 511 3280 1 chr4B.!!$F1 2769
2 TraesCS4A01G097800 chr4D 356561163 356564221 3058 False 1530.333333 4150 93.962 511 3377 3 chr4D.!!$F2 2866

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
752 939 1.550374 TCTCCTCCCCCTCCTCCTT 60.55 63.158 0.0 0.0 0.0 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2407 2650 1.202734 TGCATCTCTTCTAGCCATGCC 60.203 52.381 0.0 0.0 39.33 4.4 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 8.266392 AGGCTAGTAATAGTAGTAACATAGCG 57.734 38.462 4.28 0.00 35.18 4.26
35 36 7.882271 AGGCTAGTAATAGTAGTAACATAGCGT 59.118 37.037 4.28 8.32 35.18 5.07
36 37 7.961827 GGCTAGTAATAGTAGTAACATAGCGTG 59.038 40.741 4.28 0.00 35.18 5.34
37 38 7.481169 GCTAGTAATAGTAGTAACATAGCGTGC 59.519 40.741 4.28 0.00 0.00 5.34
38 39 7.507733 AGTAATAGTAGTAACATAGCGTGCT 57.492 36.000 0.00 0.00 0.00 4.40
39 40 7.583230 AGTAATAGTAGTAACATAGCGTGCTC 58.417 38.462 0.00 0.00 0.00 4.26
40 41 3.712091 AGTAGTAACATAGCGTGCTCC 57.288 47.619 0.00 0.00 0.00 4.70
41 42 3.021695 AGTAGTAACATAGCGTGCTCCA 58.978 45.455 0.00 0.00 0.00 3.86
42 43 3.446161 AGTAGTAACATAGCGTGCTCCAA 59.554 43.478 0.00 0.00 0.00 3.53
43 44 3.543680 AGTAACATAGCGTGCTCCAAT 57.456 42.857 0.00 0.00 0.00 3.16
44 45 3.873910 AGTAACATAGCGTGCTCCAATT 58.126 40.909 0.00 0.00 0.00 2.32
45 46 4.261801 AGTAACATAGCGTGCTCCAATTT 58.738 39.130 0.00 0.00 0.00 1.82
46 47 4.700213 AGTAACATAGCGTGCTCCAATTTT 59.300 37.500 0.00 0.00 0.00 1.82
47 48 4.519540 AACATAGCGTGCTCCAATTTTT 57.480 36.364 0.00 0.00 0.00 1.94
70 71 6.854496 TTTTTGCTTATGTGACGAGTAGTT 57.146 33.333 0.00 0.00 0.00 2.24
71 72 7.949903 TTTTTGCTTATGTGACGAGTAGTTA 57.050 32.000 0.00 0.00 0.00 2.24
72 73 7.949903 TTTTGCTTATGTGACGAGTAGTTAA 57.050 32.000 0.00 0.00 0.00 2.01
73 74 8.542497 TTTTGCTTATGTGACGAGTAGTTAAT 57.458 30.769 0.00 0.00 0.00 1.40
74 75 7.520119 TTGCTTATGTGACGAGTAGTTAATG 57.480 36.000 0.00 0.00 0.00 1.90
75 76 6.859017 TGCTTATGTGACGAGTAGTTAATGA 58.141 36.000 0.00 0.00 0.00 2.57
76 77 6.972901 TGCTTATGTGACGAGTAGTTAATGAG 59.027 38.462 0.00 0.00 0.00 2.90
77 78 7.148137 TGCTTATGTGACGAGTAGTTAATGAGA 60.148 37.037 0.00 0.00 0.00 3.27
78 79 7.701078 GCTTATGTGACGAGTAGTTAATGAGAA 59.299 37.037 0.00 0.00 0.00 2.87
79 80 9.227490 CTTATGTGACGAGTAGTTAATGAGAAG 57.773 37.037 0.00 0.00 0.00 2.85
80 81 6.570672 TGTGACGAGTAGTTAATGAGAAGT 57.429 37.500 0.00 0.00 0.00 3.01
81 82 6.379386 TGTGACGAGTAGTTAATGAGAAGTG 58.621 40.000 0.00 0.00 0.00 3.16
82 83 5.800941 GTGACGAGTAGTTAATGAGAAGTGG 59.199 44.000 0.00 0.00 0.00 4.00
83 84 5.475909 TGACGAGTAGTTAATGAGAAGTGGT 59.524 40.000 0.00 0.00 0.00 4.16
84 85 6.656270 TGACGAGTAGTTAATGAGAAGTGGTA 59.344 38.462 0.00 0.00 0.00 3.25
85 86 7.175467 TGACGAGTAGTTAATGAGAAGTGGTAA 59.825 37.037 0.00 0.00 0.00 2.85
86 87 7.311408 ACGAGTAGTTAATGAGAAGTGGTAAC 58.689 38.462 0.00 0.00 0.00 2.50
109 110 7.496529 ACATAATATGTTGAACATAGCGCTT 57.503 32.000 18.68 13.56 43.51 4.68
110 111 7.930217 ACATAATATGTTGAACATAGCGCTTT 58.070 30.769 18.68 4.25 43.51 3.51
111 112 8.070171 ACATAATATGTTGAACATAGCGCTTTC 58.930 33.333 18.68 14.78 43.51 2.62
112 113 3.764885 ATGTTGAACATAGCGCTTTCC 57.235 42.857 18.68 2.36 36.99 3.13
113 114 2.499197 TGTTGAACATAGCGCTTTCCA 58.501 42.857 18.68 2.04 0.00 3.53
114 115 2.881513 TGTTGAACATAGCGCTTTCCAA 59.118 40.909 18.68 10.60 0.00 3.53
115 116 3.058293 TGTTGAACATAGCGCTTTCCAAG 60.058 43.478 18.68 0.00 0.00 3.61
116 117 3.052455 TGAACATAGCGCTTTCCAAGA 57.948 42.857 18.68 0.00 0.00 3.02
117 118 2.742053 TGAACATAGCGCTTTCCAAGAC 59.258 45.455 18.68 0.78 0.00 3.01
118 119 2.472695 ACATAGCGCTTTCCAAGACA 57.527 45.000 18.68 0.00 0.00 3.41
119 120 2.778299 ACATAGCGCTTTCCAAGACAA 58.222 42.857 18.68 0.00 0.00 3.18
120 121 3.146066 ACATAGCGCTTTCCAAGACAAA 58.854 40.909 18.68 0.00 0.00 2.83
121 122 3.568007 ACATAGCGCTTTCCAAGACAAAA 59.432 39.130 18.68 0.00 0.00 2.44
122 123 4.218417 ACATAGCGCTTTCCAAGACAAAAT 59.782 37.500 18.68 0.00 0.00 1.82
123 124 3.017265 AGCGCTTTCCAAGACAAAATG 57.983 42.857 2.64 0.00 0.00 2.32
124 125 2.622942 AGCGCTTTCCAAGACAAAATGA 59.377 40.909 2.64 0.00 0.00 2.57
125 126 2.982470 GCGCTTTCCAAGACAAAATGAG 59.018 45.455 0.00 0.00 0.00 2.90
126 127 3.550842 GCGCTTTCCAAGACAAAATGAGT 60.551 43.478 0.00 0.00 0.00 3.41
127 128 4.222114 CGCTTTCCAAGACAAAATGAGTC 58.778 43.478 0.00 0.00 36.26 3.36
129 130 5.179368 CGCTTTCCAAGACAAAATGAGTCTA 59.821 40.000 0.00 0.00 45.11 2.59
130 131 6.374578 GCTTTCCAAGACAAAATGAGTCTAC 58.625 40.000 0.00 0.00 45.11 2.59
131 132 6.017109 GCTTTCCAAGACAAAATGAGTCTACA 60.017 38.462 0.00 0.00 45.11 2.74
132 133 7.468631 GCTTTCCAAGACAAAATGAGTCTACAA 60.469 37.037 0.00 0.00 45.11 2.41
133 134 7.873719 TTCCAAGACAAAATGAGTCTACAAA 57.126 32.000 0.00 0.00 45.11 2.83
134 135 8.463930 TTCCAAGACAAAATGAGTCTACAAAT 57.536 30.769 0.00 0.00 45.11 2.32
135 136 8.463930 TCCAAGACAAAATGAGTCTACAAATT 57.536 30.769 0.00 0.00 45.11 1.82
136 137 9.567776 TCCAAGACAAAATGAGTCTACAAATTA 57.432 29.630 0.00 0.00 45.11 1.40
161 162 8.995027 ATTAAATAAAGTCATCTATGCCACCA 57.005 30.769 0.00 0.00 0.00 4.17
162 163 8.995027 TTAAATAAAGTCATCTATGCCACCAT 57.005 30.769 0.00 0.00 35.44 3.55
163 164 7.902920 AAATAAAGTCATCTATGCCACCATT 57.097 32.000 0.00 0.00 32.85 3.16
164 165 8.995027 AAATAAAGTCATCTATGCCACCATTA 57.005 30.769 0.00 0.00 32.85 1.90
165 166 7.986085 ATAAAGTCATCTATGCCACCATTAC 57.014 36.000 0.00 0.00 32.85 1.89
166 167 5.636903 AAGTCATCTATGCCACCATTACT 57.363 39.130 0.00 0.00 32.85 2.24
167 168 6.747414 AAGTCATCTATGCCACCATTACTA 57.253 37.500 0.00 0.00 32.85 1.82
168 169 6.942163 AGTCATCTATGCCACCATTACTAT 57.058 37.500 0.00 0.00 32.85 2.12
169 170 6.705302 AGTCATCTATGCCACCATTACTATG 58.295 40.000 0.00 0.00 32.85 2.23
170 171 6.270927 AGTCATCTATGCCACCATTACTATGT 59.729 38.462 0.00 0.00 32.85 2.29
171 172 6.936900 GTCATCTATGCCACCATTACTATGTT 59.063 38.462 0.00 0.00 32.85 2.71
172 173 8.094548 GTCATCTATGCCACCATTACTATGTTA 58.905 37.037 0.00 0.00 32.85 2.41
173 174 8.094548 TCATCTATGCCACCATTACTATGTTAC 58.905 37.037 0.00 0.00 32.85 2.50
174 175 7.612065 TCTATGCCACCATTACTATGTTACT 57.388 36.000 0.00 0.00 32.85 2.24
175 176 7.667557 TCTATGCCACCATTACTATGTTACTC 58.332 38.462 0.00 0.00 32.85 2.59
176 177 5.031066 TGCCACCATTACTATGTTACTCC 57.969 43.478 0.00 0.00 0.00 3.85
177 178 4.141574 TGCCACCATTACTATGTTACTCCC 60.142 45.833 0.00 0.00 0.00 4.30
178 179 4.102681 GCCACCATTACTATGTTACTCCCT 59.897 45.833 0.00 0.00 0.00 4.20
179 180 5.742255 GCCACCATTACTATGTTACTCCCTC 60.742 48.000 0.00 0.00 0.00 4.30
180 181 5.602978 CCACCATTACTATGTTACTCCCTCT 59.397 44.000 0.00 0.00 0.00 3.69
181 182 6.463049 CCACCATTACTATGTTACTCCCTCTG 60.463 46.154 0.00 0.00 0.00 3.35
182 183 6.098409 CACCATTACTATGTTACTCCCTCTGT 59.902 42.308 0.00 0.00 0.00 3.41
183 184 6.672657 ACCATTACTATGTTACTCCCTCTGTT 59.327 38.462 0.00 0.00 0.00 3.16
184 185 7.182206 ACCATTACTATGTTACTCCCTCTGTTT 59.818 37.037 0.00 0.00 0.00 2.83
185 186 7.711339 CCATTACTATGTTACTCCCTCTGTTTC 59.289 40.741 0.00 0.00 0.00 2.78
186 187 8.478877 CATTACTATGTTACTCCCTCTGTTTCT 58.521 37.037 0.00 0.00 0.00 2.52
187 188 6.936968 ACTATGTTACTCCCTCTGTTTCTT 57.063 37.500 0.00 0.00 0.00 2.52
188 189 7.317722 ACTATGTTACTCCCTCTGTTTCTTT 57.682 36.000 0.00 0.00 0.00 2.52
189 190 7.746703 ACTATGTTACTCCCTCTGTTTCTTTT 58.253 34.615 0.00 0.00 0.00 2.27
190 191 8.218488 ACTATGTTACTCCCTCTGTTTCTTTTT 58.782 33.333 0.00 0.00 0.00 1.94
191 192 9.720769 CTATGTTACTCCCTCTGTTTCTTTTTA 57.279 33.333 0.00 0.00 0.00 1.52
192 193 7.797038 TGTTACTCCCTCTGTTTCTTTTTAC 57.203 36.000 0.00 0.00 0.00 2.01
193 194 7.571025 TGTTACTCCCTCTGTTTCTTTTTACT 58.429 34.615 0.00 0.00 0.00 2.24
194 195 7.713942 TGTTACTCCCTCTGTTTCTTTTTACTC 59.286 37.037 0.00 0.00 0.00 2.59
195 196 6.502074 ACTCCCTCTGTTTCTTTTTACTCT 57.498 37.500 0.00 0.00 0.00 3.24
196 197 6.292150 ACTCCCTCTGTTTCTTTTTACTCTG 58.708 40.000 0.00 0.00 0.00 3.35
197 198 5.063880 TCCCTCTGTTTCTTTTTACTCTGC 58.936 41.667 0.00 0.00 0.00 4.26
198 199 4.821805 CCCTCTGTTTCTTTTTACTCTGCA 59.178 41.667 0.00 0.00 0.00 4.41
199 200 5.474876 CCCTCTGTTTCTTTTTACTCTGCAT 59.525 40.000 0.00 0.00 0.00 3.96
200 201 6.655003 CCCTCTGTTTCTTTTTACTCTGCATA 59.345 38.462 0.00 0.00 0.00 3.14
201 202 7.337942 CCCTCTGTTTCTTTTTACTCTGCATAT 59.662 37.037 0.00 0.00 0.00 1.78
202 203 9.383519 CCTCTGTTTCTTTTTACTCTGCATATA 57.616 33.333 0.00 0.00 0.00 0.86
213 214 9.679661 TTTTACTCTGCATATAAGATTTGGTCA 57.320 29.630 0.00 0.00 0.00 4.02
214 215 9.679661 TTTACTCTGCATATAAGATTTGGTCAA 57.320 29.630 0.00 0.00 0.00 3.18
215 216 9.679661 TTACTCTGCATATAAGATTTGGTCAAA 57.320 29.630 0.00 0.00 34.46 2.69
216 217 8.218338 ACTCTGCATATAAGATTTGGTCAAAG 57.782 34.615 2.55 0.00 33.32 2.77
217 218 7.831193 ACTCTGCATATAAGATTTGGTCAAAGT 59.169 33.333 2.55 0.00 33.32 2.66
218 219 8.213518 TCTGCATATAAGATTTGGTCAAAGTC 57.786 34.615 2.55 1.51 33.32 3.01
219 220 7.828717 TCTGCATATAAGATTTGGTCAAAGTCA 59.171 33.333 2.55 0.00 33.32 3.41
220 221 8.347004 TGCATATAAGATTTGGTCAAAGTCAA 57.653 30.769 2.55 0.00 33.32 3.18
221 222 8.801299 TGCATATAAGATTTGGTCAAAGTCAAA 58.199 29.630 2.55 0.00 37.29 2.69
222 223 9.076596 GCATATAAGATTTGGTCAAAGTCAAAC 57.923 33.333 2.55 0.00 35.97 2.93
225 226 4.936891 AGATTTGGTCAAAGTCAAACTGC 58.063 39.130 2.55 0.00 35.97 4.40
226 227 4.402155 AGATTTGGTCAAAGTCAAACTGCA 59.598 37.500 2.55 0.00 35.97 4.41
227 228 3.502191 TTGGTCAAAGTCAAACTGCAC 57.498 42.857 0.00 0.00 0.00 4.57
228 229 2.441410 TGGTCAAAGTCAAACTGCACA 58.559 42.857 0.00 0.00 0.00 4.57
229 230 2.822561 TGGTCAAAGTCAAACTGCACAA 59.177 40.909 0.00 0.00 0.00 3.33
230 231 3.256879 TGGTCAAAGTCAAACTGCACAAA 59.743 39.130 0.00 0.00 0.00 2.83
231 232 3.859386 GGTCAAAGTCAAACTGCACAAAG 59.141 43.478 0.00 0.00 0.00 2.77
232 233 4.485163 GTCAAAGTCAAACTGCACAAAGT 58.515 39.130 0.00 0.00 0.00 2.66
233 234 4.923281 GTCAAAGTCAAACTGCACAAAGTT 59.077 37.500 0.00 0.00 42.21 2.66
239 240 3.951775 AAACTGCACAAAGTTTGACCA 57.048 38.095 22.23 15.46 46.16 4.02
240 241 3.951775 AACTGCACAAAGTTTGACCAA 57.048 38.095 22.23 4.11 37.05 3.67
241 242 3.508744 ACTGCACAAAGTTTGACCAAG 57.491 42.857 22.23 14.44 0.00 3.61
242 243 2.825532 ACTGCACAAAGTTTGACCAAGT 59.174 40.909 22.23 15.00 0.00 3.16
243 244 3.119495 ACTGCACAAAGTTTGACCAAGTC 60.119 43.478 22.23 3.74 0.00 3.01
244 245 3.088532 TGCACAAAGTTTGACCAAGTCT 58.911 40.909 22.23 0.00 33.15 3.24
245 246 4.265893 TGCACAAAGTTTGACCAAGTCTA 58.734 39.130 22.23 0.00 33.15 2.59
246 247 4.887071 TGCACAAAGTTTGACCAAGTCTAT 59.113 37.500 22.23 0.00 33.15 1.98
247 248 6.058833 TGCACAAAGTTTGACCAAGTCTATA 58.941 36.000 22.23 0.00 33.15 1.31
248 249 6.714810 TGCACAAAGTTTGACCAAGTCTATAT 59.285 34.615 22.23 0.00 33.15 0.86
249 250 7.880713 TGCACAAAGTTTGACCAAGTCTATATA 59.119 33.333 22.23 0.00 33.15 0.86
250 251 8.726988 GCACAAAGTTTGACCAAGTCTATATAA 58.273 33.333 22.23 0.00 33.15 0.98
308 309 6.542852 AGTATGAACATACGTTTCATTGTGC 58.457 36.000 16.73 7.62 46.18 4.57
309 310 4.820284 TGAACATACGTTTCATTGTGCA 57.180 36.364 0.00 0.00 34.75 4.57
310 311 5.369685 TGAACATACGTTTCATTGTGCAT 57.630 34.783 0.00 0.00 34.75 3.96
311 312 5.389778 TGAACATACGTTTCATTGTGCATC 58.610 37.500 0.00 0.00 34.75 3.91
312 313 5.181056 TGAACATACGTTTCATTGTGCATCT 59.819 36.000 0.00 0.00 34.75 2.90
313 314 4.973396 ACATACGTTTCATTGTGCATCTG 58.027 39.130 0.00 0.00 0.00 2.90
314 315 4.694982 ACATACGTTTCATTGTGCATCTGA 59.305 37.500 0.00 0.00 0.00 3.27
315 316 5.355071 ACATACGTTTCATTGTGCATCTGAT 59.645 36.000 0.00 0.00 0.00 2.90
316 317 6.538381 ACATACGTTTCATTGTGCATCTGATA 59.462 34.615 0.00 0.00 0.00 2.15
317 318 5.878332 ACGTTTCATTGTGCATCTGATAA 57.122 34.783 0.00 0.00 0.00 1.75
318 319 6.441093 ACGTTTCATTGTGCATCTGATAAT 57.559 33.333 0.00 0.00 0.00 1.28
319 320 7.552458 ACGTTTCATTGTGCATCTGATAATA 57.448 32.000 0.00 0.00 0.00 0.98
320 321 8.158169 ACGTTTCATTGTGCATCTGATAATAT 57.842 30.769 0.00 0.00 0.00 1.28
321 322 8.623903 ACGTTTCATTGTGCATCTGATAATATT 58.376 29.630 0.00 0.00 0.00 1.28
385 386 9.425577 AGTTAGTCAAACTCTATAAAGCTTGAC 57.574 33.333 12.49 12.49 45.64 3.18
386 387 9.425577 GTTAGTCAAACTCTATAAAGCTTGACT 57.574 33.333 22.20 22.20 36.89 3.41
387 388 9.998106 TTAGTCAAACTCTATAAAGCTTGACTT 57.002 29.630 23.23 12.05 41.70 3.01
397 398 3.801114 AAGCTTGACTTTGACCAAACC 57.199 42.857 0.00 0.00 33.71 3.27
398 399 3.018423 AGCTTGACTTTGACCAAACCT 57.982 42.857 0.00 0.00 0.00 3.50
399 400 3.365472 AGCTTGACTTTGACCAAACCTT 58.635 40.909 0.00 0.00 0.00 3.50
400 401 4.532834 AGCTTGACTTTGACCAAACCTTA 58.467 39.130 0.00 0.00 0.00 2.69
401 402 5.140454 AGCTTGACTTTGACCAAACCTTAT 58.860 37.500 0.00 0.00 0.00 1.73
402 403 6.303839 AGCTTGACTTTGACCAAACCTTATA 58.696 36.000 0.00 0.00 0.00 0.98
403 404 6.948309 AGCTTGACTTTGACCAAACCTTATAT 59.052 34.615 0.00 0.00 0.00 0.86
404 405 8.107095 AGCTTGACTTTGACCAAACCTTATATA 58.893 33.333 0.00 0.00 0.00 0.86
405 406 8.182227 GCTTGACTTTGACCAAACCTTATATAC 58.818 37.037 0.00 0.00 0.00 1.47
406 407 7.837202 TGACTTTGACCAAACCTTATATACG 57.163 36.000 0.00 0.00 0.00 3.06
407 408 6.819649 TGACTTTGACCAAACCTTATATACGG 59.180 38.462 3.75 3.75 0.00 4.02
408 409 6.949715 ACTTTGACCAAACCTTATATACGGA 58.050 36.000 12.04 0.00 0.00 4.69
409 410 7.571025 ACTTTGACCAAACCTTATATACGGAT 58.429 34.615 12.04 0.00 0.00 4.18
410 411 8.050930 ACTTTGACCAAACCTTATATACGGATT 58.949 33.333 12.04 3.78 0.00 3.01
411 412 9.550406 CTTTGACCAAACCTTATATACGGATTA 57.450 33.333 12.04 0.00 0.00 1.75
412 413 9.902684 TTTGACCAAACCTTATATACGGATTAA 57.097 29.630 12.04 0.00 0.00 1.40
413 414 9.902684 TTGACCAAACCTTATATACGGATTAAA 57.097 29.630 12.04 0.00 0.00 1.52
414 415 9.902684 TGACCAAACCTTATATACGGATTAAAA 57.097 29.630 12.04 0.00 0.00 1.52
427 428 8.817092 ATACGGATTAAAAAGAAATGAAGGGA 57.183 30.769 0.00 0.00 0.00 4.20
428 429 7.158099 ACGGATTAAAAAGAAATGAAGGGAG 57.842 36.000 0.00 0.00 0.00 4.30
429 430 6.719829 ACGGATTAAAAAGAAATGAAGGGAGT 59.280 34.615 0.00 0.00 0.00 3.85
430 431 7.886446 ACGGATTAAAAAGAAATGAAGGGAGTA 59.114 33.333 0.00 0.00 0.00 2.59
431 432 8.182227 CGGATTAAAAAGAAATGAAGGGAGTAC 58.818 37.037 0.00 0.00 0.00 2.73
432 433 9.244292 GGATTAAAAAGAAATGAAGGGAGTACT 57.756 33.333 0.00 0.00 0.00 2.73
436 437 5.966742 AAGAAATGAAGGGAGTACTTTGC 57.033 39.130 0.00 0.00 0.00 3.68
437 438 4.985538 AGAAATGAAGGGAGTACTTTGCA 58.014 39.130 0.00 0.00 0.00 4.08
438 439 4.762251 AGAAATGAAGGGAGTACTTTGCAC 59.238 41.667 0.00 0.00 0.00 4.57
439 440 4.373156 AATGAAGGGAGTACTTTGCACT 57.627 40.909 0.00 0.00 0.00 4.40
440 441 5.499004 AATGAAGGGAGTACTTTGCACTA 57.501 39.130 0.00 0.00 0.00 2.74
441 442 5.700402 ATGAAGGGAGTACTTTGCACTAT 57.300 39.130 0.00 0.00 0.00 2.12
442 443 6.808321 ATGAAGGGAGTACTTTGCACTATA 57.192 37.500 0.00 0.00 0.00 1.31
443 444 6.808321 TGAAGGGAGTACTTTGCACTATAT 57.192 37.500 0.00 0.00 0.00 0.86
444 445 7.907841 TGAAGGGAGTACTTTGCACTATATA 57.092 36.000 0.00 0.00 0.00 0.86
445 446 7.952671 TGAAGGGAGTACTTTGCACTATATAG 58.047 38.462 8.27 8.27 0.00 1.31
446 447 7.783119 TGAAGGGAGTACTTTGCACTATATAGA 59.217 37.037 16.79 0.00 0.00 1.98
447 448 8.728596 AAGGGAGTACTTTGCACTATATAGAT 57.271 34.615 16.79 0.00 0.00 1.98
448 449 9.824216 AAGGGAGTACTTTGCACTATATAGATA 57.176 33.333 16.79 0.00 0.00 1.98
449 450 9.469097 AGGGAGTACTTTGCACTATATAGATAG 57.531 37.037 16.79 2.77 40.92 2.08
496 497 4.796038 TGCACTAGTACAAGTTACTCCC 57.204 45.455 0.00 0.00 0.00 4.30
497 498 3.512724 TGCACTAGTACAAGTTACTCCCC 59.487 47.826 0.00 0.00 0.00 4.81
498 499 3.512724 GCACTAGTACAAGTTACTCCCCA 59.487 47.826 0.00 0.00 0.00 4.96
499 500 4.620097 GCACTAGTACAAGTTACTCCCCAC 60.620 50.000 0.00 0.00 0.00 4.61
500 501 4.771054 CACTAGTACAAGTTACTCCCCACT 59.229 45.833 0.00 0.00 0.00 4.00
501 502 5.948162 CACTAGTACAAGTTACTCCCCACTA 59.052 44.000 0.00 0.00 0.00 2.74
502 503 6.606395 CACTAGTACAAGTTACTCCCCACTAT 59.394 42.308 0.00 0.00 0.00 2.12
503 504 5.934402 AGTACAAGTTACTCCCCACTATG 57.066 43.478 0.00 0.00 0.00 2.23
504 505 5.586877 AGTACAAGTTACTCCCCACTATGA 58.413 41.667 0.00 0.00 0.00 2.15
505 506 4.820894 ACAAGTTACTCCCCACTATGAC 57.179 45.455 0.00 0.00 0.00 3.06
506 507 3.518303 ACAAGTTACTCCCCACTATGACC 59.482 47.826 0.00 0.00 0.00 4.02
507 508 3.484953 AGTTACTCCCCACTATGACCA 57.515 47.619 0.00 0.00 0.00 4.02
508 509 3.375699 AGTTACTCCCCACTATGACCAG 58.624 50.000 0.00 0.00 0.00 4.00
509 510 1.789523 TACTCCCCACTATGACCAGC 58.210 55.000 0.00 0.00 0.00 4.85
523 524 4.853468 TGACCAGCCTAACCATTTCATA 57.147 40.909 0.00 0.00 0.00 2.15
558 559 8.680903 CACAATGCTGGAAGAGTATTAATCTTT 58.319 33.333 7.73 0.00 34.99 2.52
559 560 9.905713 ACAATGCTGGAAGAGTATTAATCTTTA 57.094 29.630 7.73 1.09 34.99 1.85
631 818 9.650539 TTAATCTCTCTCTCTCAAACATTCTTG 57.349 33.333 0.00 0.00 0.00 3.02
752 939 1.550374 TCTCCTCCCCCTCCTCCTT 60.550 63.158 0.00 0.00 0.00 3.36
1077 1312 2.158234 ACTACATGATCCTCCCTCTCCC 60.158 54.545 0.00 0.00 0.00 4.30
1127 1370 4.147449 CCAGCTGCGATCCGTCCA 62.147 66.667 8.66 0.00 0.00 4.02
1343 1586 0.749091 GCACAGCATATGCCAGTGGA 60.749 55.000 33.76 0.00 43.41 4.02
1713 1956 2.935201 CTCCAAGCCATCTTCTTCTTCG 59.065 50.000 0.00 0.00 0.00 3.79
2397 2640 2.851263 ATACACCGCAGTTTCTTGGA 57.149 45.000 0.00 0.00 0.00 3.53
2406 2649 1.200020 CAGTTTCTTGGACAATCGGCC 59.800 52.381 0.00 0.00 0.00 6.13
2407 2650 0.168128 GTTTCTTGGACAATCGGCCG 59.832 55.000 22.12 22.12 0.00 6.13
2409 2652 3.508840 CTTGGACAATCGGCCGGC 61.509 66.667 27.83 21.18 0.00 6.13
2410 2653 4.337177 TTGGACAATCGGCCGGCA 62.337 61.111 30.85 9.36 0.00 5.69
2411 2654 3.636929 TTGGACAATCGGCCGGCAT 62.637 57.895 30.85 11.77 0.00 4.40
2412 2655 3.585990 GGACAATCGGCCGGCATG 61.586 66.667 30.85 22.79 0.00 4.06
2413 2656 3.585990 GACAATCGGCCGGCATGG 61.586 66.667 30.85 17.06 42.50 3.66
2491 2734 6.153510 GGGGTTCAAGCTTTAATTCTTCATCT 59.846 38.462 0.00 0.00 0.00 2.90
2566 2817 4.568152 TCAAGTTAAAGTTGCTCCTTGC 57.432 40.909 0.00 0.00 43.25 4.01
2591 2842 3.633065 TGGTTAGTAACACTTTTGCACCC 59.367 43.478 14.81 0.00 0.00 4.61
2592 2843 3.633065 GGTTAGTAACACTTTTGCACCCA 59.367 43.478 14.81 0.00 0.00 4.51
2597 2848 2.618442 ACACTTTTGCACCCATTTGG 57.382 45.000 0.00 0.00 41.37 3.28
2606 2857 4.023137 CCCATTTGGTCTGCCAGG 57.977 61.111 0.00 0.00 46.91 4.45
2607 2858 1.683365 CCCATTTGGTCTGCCAGGG 60.683 63.158 0.00 0.00 46.91 4.45
2608 2859 1.077265 CCATTTGGTCTGCCAGGGT 59.923 57.895 0.00 0.00 46.91 4.34
2609 2860 0.331278 CCATTTGGTCTGCCAGGGTA 59.669 55.000 0.00 0.00 46.91 3.69
2633 2884 6.694447 AGTAGTACGTGTCCATTGTGTTATT 58.306 36.000 0.00 0.00 0.00 1.40
2668 2919 7.687941 AACCTTTTCACACTTACATATGGAG 57.312 36.000 7.80 7.20 0.00 3.86
2710 2963 8.969260 TGGGTATATATGGTCATACTAGTACG 57.031 38.462 4.31 0.00 0.00 3.67
2711 2964 8.551440 TGGGTATATATGGTCATACTAGTACGT 58.449 37.037 4.31 0.00 0.00 3.57
2716 2969 7.969536 ATATGGTCATACTAGTACGTACGTT 57.030 36.000 27.92 12.33 0.00 3.99
2755 3008 6.932753 TGGGGATTGGAGATTGGTTAATTAT 58.067 36.000 0.00 0.00 0.00 1.28
2756 3009 7.369434 TGGGGATTGGAGATTGGTTAATTATT 58.631 34.615 0.00 0.00 0.00 1.40
2757 3010 8.515351 TGGGGATTGGAGATTGGTTAATTATTA 58.485 33.333 0.00 0.00 0.00 0.98
2765 3018 9.899226 GGAGATTGGTTAATTATTAGATTGTGC 57.101 33.333 0.00 0.00 0.00 4.57
2890 3151 7.359598 CGATGTTCCTCTCTTTGTAGAGTTTTG 60.360 40.741 0.00 0.00 46.62 2.44
3000 3261 6.779860 TCTTCCTTTGCTCTTATGGTAAACT 58.220 36.000 0.00 0.00 0.00 2.66
3103 3365 3.526019 TCCCCGGTTCCAAATCTCTAAAT 59.474 43.478 0.00 0.00 0.00 1.40
3111 3373 6.490381 GGTTCCAAATCTCTAAATATGGGTCC 59.510 42.308 0.00 0.00 0.00 4.46
3126 3388 8.409358 AATATGGGTCCTATTTGTAAATCAGC 57.591 34.615 0.00 0.00 0.00 4.26
3150 3412 5.385509 TGTAAAAATGCCTAGCCAAACTC 57.614 39.130 0.00 0.00 0.00 3.01
3246 3508 6.446318 TGCAACAAATTCTGAATTAGTCACC 58.554 36.000 15.45 4.84 31.13 4.02
3312 3574 7.343057 ACTCAACTGATGGTTAGATGTCTATGA 59.657 37.037 0.00 0.00 36.23 2.15
3331 3593 9.349713 GTCTATGAAATTTATATGTGGTGGGAA 57.650 33.333 0.00 0.00 0.00 3.97
3366 3628 3.787785 TGAACATGTCCGCATACGTAAT 58.212 40.909 0.00 0.00 37.70 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.376075 CGCTATGTTACTACTATTACTAGCCTA 57.624 37.037 0.00 0.00 0.00 3.93
9 10 7.882271 ACGCTATGTTACTACTATTACTAGCCT 59.118 37.037 0.00 0.00 0.00 4.58
10 11 7.961827 CACGCTATGTTACTACTATTACTAGCC 59.038 40.741 0.00 0.00 0.00 3.93
11 12 7.481169 GCACGCTATGTTACTACTATTACTAGC 59.519 40.741 0.00 0.00 0.00 3.42
12 13 8.719648 AGCACGCTATGTTACTACTATTACTAG 58.280 37.037 0.00 0.00 0.00 2.57
13 14 8.613060 AGCACGCTATGTTACTACTATTACTA 57.387 34.615 0.00 0.00 0.00 1.82
14 15 7.308469 GGAGCACGCTATGTTACTACTATTACT 60.308 40.741 0.00 0.00 0.00 2.24
15 16 6.800892 GGAGCACGCTATGTTACTACTATTAC 59.199 42.308 0.00 0.00 0.00 1.89
16 17 6.487668 TGGAGCACGCTATGTTACTACTATTA 59.512 38.462 0.00 0.00 0.00 0.98
17 18 5.301045 TGGAGCACGCTATGTTACTACTATT 59.699 40.000 0.00 0.00 0.00 1.73
18 19 4.825634 TGGAGCACGCTATGTTACTACTAT 59.174 41.667 0.00 0.00 0.00 2.12
19 20 4.201657 TGGAGCACGCTATGTTACTACTA 58.798 43.478 0.00 0.00 0.00 1.82
20 21 3.021695 TGGAGCACGCTATGTTACTACT 58.978 45.455 0.00 0.00 0.00 2.57
21 22 3.431922 TGGAGCACGCTATGTTACTAC 57.568 47.619 0.00 0.00 0.00 2.73
22 23 4.665833 ATTGGAGCACGCTATGTTACTA 57.334 40.909 0.00 0.00 0.00 1.82
23 24 3.543680 ATTGGAGCACGCTATGTTACT 57.456 42.857 0.00 0.00 0.00 2.24
24 25 4.616181 AAATTGGAGCACGCTATGTTAC 57.384 40.909 0.00 0.00 0.00 2.50
25 26 5.637006 AAAAATTGGAGCACGCTATGTTA 57.363 34.783 0.00 0.00 0.00 2.41
26 27 4.519540 AAAAATTGGAGCACGCTATGTT 57.480 36.364 0.00 0.00 0.00 2.71
47 48 6.854496 AACTACTCGTCACATAAGCAAAAA 57.146 33.333 0.00 0.00 0.00 1.94
48 49 7.949903 TTAACTACTCGTCACATAAGCAAAA 57.050 32.000 0.00 0.00 0.00 2.44
49 50 7.815549 TCATTAACTACTCGTCACATAAGCAAA 59.184 33.333 0.00 0.00 0.00 3.68
50 51 7.317390 TCATTAACTACTCGTCACATAAGCAA 58.683 34.615 0.00 0.00 0.00 3.91
51 52 6.859017 TCATTAACTACTCGTCACATAAGCA 58.141 36.000 0.00 0.00 0.00 3.91
52 53 7.194278 TCTCATTAACTACTCGTCACATAAGC 58.806 38.462 0.00 0.00 0.00 3.09
53 54 9.227490 CTTCTCATTAACTACTCGTCACATAAG 57.773 37.037 0.00 0.00 0.00 1.73
54 55 8.737175 ACTTCTCATTAACTACTCGTCACATAA 58.263 33.333 0.00 0.00 0.00 1.90
55 56 8.182227 CACTTCTCATTAACTACTCGTCACATA 58.818 37.037 0.00 0.00 0.00 2.29
56 57 7.030165 CACTTCTCATTAACTACTCGTCACAT 58.970 38.462 0.00 0.00 0.00 3.21
57 58 6.379386 CACTTCTCATTAACTACTCGTCACA 58.621 40.000 0.00 0.00 0.00 3.58
58 59 5.800941 CCACTTCTCATTAACTACTCGTCAC 59.199 44.000 0.00 0.00 0.00 3.67
59 60 5.475909 ACCACTTCTCATTAACTACTCGTCA 59.524 40.000 0.00 0.00 0.00 4.35
60 61 5.952033 ACCACTTCTCATTAACTACTCGTC 58.048 41.667 0.00 0.00 0.00 4.20
61 62 5.979288 ACCACTTCTCATTAACTACTCGT 57.021 39.130 0.00 0.00 0.00 4.18
62 63 7.310664 TGTTACCACTTCTCATTAACTACTCG 58.689 38.462 0.00 0.00 0.00 4.18
86 87 7.535258 GGAAAGCGCTATGTTCAACATATTATG 59.465 37.037 12.05 0.81 40.01 1.90
87 88 7.228507 TGGAAAGCGCTATGTTCAACATATTAT 59.771 33.333 12.05 0.00 40.01 1.28
88 89 6.540551 TGGAAAGCGCTATGTTCAACATATTA 59.459 34.615 12.05 0.00 40.01 0.98
89 90 5.356751 TGGAAAGCGCTATGTTCAACATATT 59.643 36.000 12.05 2.11 40.01 1.28
90 91 4.881273 TGGAAAGCGCTATGTTCAACATAT 59.119 37.500 12.05 0.00 40.01 1.78
91 92 4.257731 TGGAAAGCGCTATGTTCAACATA 58.742 39.130 12.05 9.92 39.88 2.29
92 93 3.081061 TGGAAAGCGCTATGTTCAACAT 58.919 40.909 12.05 8.41 42.35 2.71
93 94 2.499197 TGGAAAGCGCTATGTTCAACA 58.501 42.857 12.05 2.69 0.00 3.33
94 95 3.188460 TCTTGGAAAGCGCTATGTTCAAC 59.812 43.478 12.05 0.00 45.70 3.18
95 96 3.188460 GTCTTGGAAAGCGCTATGTTCAA 59.812 43.478 12.05 9.79 45.70 2.69
96 97 2.742053 GTCTTGGAAAGCGCTATGTTCA 59.258 45.455 12.05 0.50 45.70 3.18
97 98 2.742053 TGTCTTGGAAAGCGCTATGTTC 59.258 45.455 12.05 11.47 45.70 3.18
98 99 2.778299 TGTCTTGGAAAGCGCTATGTT 58.222 42.857 12.05 0.00 45.70 2.71
99 100 2.472695 TGTCTTGGAAAGCGCTATGT 57.527 45.000 12.05 0.00 45.70 2.29
100 101 3.829886 TTTGTCTTGGAAAGCGCTATG 57.170 42.857 12.05 0.00 45.70 2.23
101 102 4.458989 TCATTTTGTCTTGGAAAGCGCTAT 59.541 37.500 12.05 0.00 45.70 2.97
102 103 3.818210 TCATTTTGTCTTGGAAAGCGCTA 59.182 39.130 12.05 0.00 45.70 4.26
103 104 2.622942 TCATTTTGTCTTGGAAAGCGCT 59.377 40.909 2.64 2.64 45.70 5.92
104 105 2.982470 CTCATTTTGTCTTGGAAAGCGC 59.018 45.455 0.00 0.00 45.70 5.92
105 106 4.023707 AGACTCATTTTGTCTTGGAAAGCG 60.024 41.667 0.00 0.00 45.70 4.68
106 107 5.444663 AGACTCATTTTGTCTTGGAAAGC 57.555 39.130 0.00 0.00 45.70 3.51
108 109 7.873719 TTGTAGACTCATTTTGTCTTGGAAA 57.126 32.000 1.67 0.00 41.45 3.13
109 110 7.873719 TTTGTAGACTCATTTTGTCTTGGAA 57.126 32.000 1.67 0.00 41.45 3.53
110 111 8.463930 AATTTGTAGACTCATTTTGTCTTGGA 57.536 30.769 1.67 0.00 41.45 3.53
136 137 8.995027 TGGTGGCATAGATGACTTTATTTAAT 57.005 30.769 0.00 0.00 36.54 1.40
137 138 8.995027 ATGGTGGCATAGATGACTTTATTTAA 57.005 30.769 0.00 0.00 36.54 1.52
138 139 8.995027 AATGGTGGCATAGATGACTTTATTTA 57.005 30.769 0.00 0.00 36.54 1.40
139 140 7.902920 AATGGTGGCATAGATGACTTTATTT 57.097 32.000 0.00 0.00 36.54 1.40
140 141 8.220559 AGTAATGGTGGCATAGATGACTTTATT 58.779 33.333 0.00 0.00 36.54 1.40
141 142 7.749666 AGTAATGGTGGCATAGATGACTTTAT 58.250 34.615 0.00 0.00 36.54 1.40
142 143 7.136822 AGTAATGGTGGCATAGATGACTTTA 57.863 36.000 0.00 0.00 36.54 1.85
143 144 6.006275 AGTAATGGTGGCATAGATGACTTT 57.994 37.500 0.00 0.00 36.54 2.66
144 145 5.636903 AGTAATGGTGGCATAGATGACTT 57.363 39.130 0.00 0.00 36.54 3.01
145 146 6.270927 ACATAGTAATGGTGGCATAGATGACT 59.729 38.462 0.00 0.00 37.43 3.41
146 147 6.467677 ACATAGTAATGGTGGCATAGATGAC 58.532 40.000 0.00 0.00 37.43 3.06
147 148 6.686484 ACATAGTAATGGTGGCATAGATGA 57.314 37.500 0.00 0.00 37.43 2.92
148 149 8.097038 AGTAACATAGTAATGGTGGCATAGATG 58.903 37.037 0.00 0.00 37.43 2.90
149 150 8.207350 AGTAACATAGTAATGGTGGCATAGAT 57.793 34.615 0.00 0.00 37.43 1.98
150 151 7.256190 GGAGTAACATAGTAATGGTGGCATAGA 60.256 40.741 0.00 0.00 37.43 1.98
151 152 6.874134 GGAGTAACATAGTAATGGTGGCATAG 59.126 42.308 0.00 0.00 37.43 2.23
152 153 6.239772 GGGAGTAACATAGTAATGGTGGCATA 60.240 42.308 0.00 0.00 37.43 3.14
153 154 5.456186 GGGAGTAACATAGTAATGGTGGCAT 60.456 44.000 0.00 0.00 37.43 4.40
154 155 4.141574 GGGAGTAACATAGTAATGGTGGCA 60.142 45.833 0.00 0.00 37.43 4.92
155 156 4.102681 AGGGAGTAACATAGTAATGGTGGC 59.897 45.833 0.00 0.00 37.43 5.01
156 157 5.602978 AGAGGGAGTAACATAGTAATGGTGG 59.397 44.000 0.00 0.00 37.43 4.61
157 158 6.098409 ACAGAGGGAGTAACATAGTAATGGTG 59.902 42.308 0.00 0.00 37.43 4.17
158 159 6.203072 ACAGAGGGAGTAACATAGTAATGGT 58.797 40.000 0.00 0.00 37.43 3.55
159 160 6.732896 ACAGAGGGAGTAACATAGTAATGG 57.267 41.667 0.00 0.00 37.43 3.16
160 161 8.478877 AGAAACAGAGGGAGTAACATAGTAATG 58.521 37.037 0.00 0.00 39.17 1.90
161 162 8.611051 AGAAACAGAGGGAGTAACATAGTAAT 57.389 34.615 0.00 0.00 0.00 1.89
162 163 8.431910 AAGAAACAGAGGGAGTAACATAGTAA 57.568 34.615 0.00 0.00 0.00 2.24
163 164 8.431910 AAAGAAACAGAGGGAGTAACATAGTA 57.568 34.615 0.00 0.00 0.00 1.82
164 165 6.936968 AAGAAACAGAGGGAGTAACATAGT 57.063 37.500 0.00 0.00 0.00 2.12
165 166 8.622948 AAAAAGAAACAGAGGGAGTAACATAG 57.377 34.615 0.00 0.00 0.00 2.23
166 167 9.498176 GTAAAAAGAAACAGAGGGAGTAACATA 57.502 33.333 0.00 0.00 0.00 2.29
167 168 8.218488 AGTAAAAAGAAACAGAGGGAGTAACAT 58.782 33.333 0.00 0.00 0.00 2.71
168 169 7.571025 AGTAAAAAGAAACAGAGGGAGTAACA 58.429 34.615 0.00 0.00 0.00 2.41
169 170 7.932491 AGAGTAAAAAGAAACAGAGGGAGTAAC 59.068 37.037 0.00 0.00 0.00 2.50
170 171 7.931948 CAGAGTAAAAAGAAACAGAGGGAGTAA 59.068 37.037 0.00 0.00 0.00 2.24
171 172 7.442656 CAGAGTAAAAAGAAACAGAGGGAGTA 58.557 38.462 0.00 0.00 0.00 2.59
172 173 6.292150 CAGAGTAAAAAGAAACAGAGGGAGT 58.708 40.000 0.00 0.00 0.00 3.85
173 174 5.180304 GCAGAGTAAAAAGAAACAGAGGGAG 59.820 44.000 0.00 0.00 0.00 4.30
174 175 5.063880 GCAGAGTAAAAAGAAACAGAGGGA 58.936 41.667 0.00 0.00 0.00 4.20
175 176 4.821805 TGCAGAGTAAAAAGAAACAGAGGG 59.178 41.667 0.00 0.00 0.00 4.30
176 177 6.566197 ATGCAGAGTAAAAAGAAACAGAGG 57.434 37.500 0.00 0.00 0.00 3.69
187 188 9.679661 TGACCAAATCTTATATGCAGAGTAAAA 57.320 29.630 0.00 0.00 0.00 1.52
188 189 9.679661 TTGACCAAATCTTATATGCAGAGTAAA 57.320 29.630 0.00 0.00 0.00 2.01
189 190 9.679661 TTTGACCAAATCTTATATGCAGAGTAA 57.320 29.630 0.00 0.00 0.00 2.24
190 191 9.330063 CTTTGACCAAATCTTATATGCAGAGTA 57.670 33.333 0.00 0.00 0.00 2.59
191 192 7.831193 ACTTTGACCAAATCTTATATGCAGAGT 59.169 33.333 0.00 0.00 0.00 3.24
192 193 8.218338 ACTTTGACCAAATCTTATATGCAGAG 57.782 34.615 0.00 0.00 0.00 3.35
193 194 7.828717 TGACTTTGACCAAATCTTATATGCAGA 59.171 33.333 0.00 0.00 0.00 4.26
194 195 7.988737 TGACTTTGACCAAATCTTATATGCAG 58.011 34.615 0.00 0.00 0.00 4.41
195 196 7.936496 TGACTTTGACCAAATCTTATATGCA 57.064 32.000 0.00 0.00 0.00 3.96
196 197 9.076596 GTTTGACTTTGACCAAATCTTATATGC 57.923 33.333 0.00 0.00 35.14 3.14
199 200 8.296713 GCAGTTTGACTTTGACCAAATCTTATA 58.703 33.333 0.00 0.00 35.14 0.98
200 201 7.147976 GCAGTTTGACTTTGACCAAATCTTAT 58.852 34.615 0.00 0.00 35.14 1.73
201 202 6.096141 TGCAGTTTGACTTTGACCAAATCTTA 59.904 34.615 0.00 0.00 35.14 2.10
202 203 5.105392 TGCAGTTTGACTTTGACCAAATCTT 60.105 36.000 0.00 0.00 35.14 2.40
203 204 4.402155 TGCAGTTTGACTTTGACCAAATCT 59.598 37.500 0.00 0.00 35.14 2.40
204 205 4.504097 GTGCAGTTTGACTTTGACCAAATC 59.496 41.667 0.00 0.00 35.14 2.17
205 206 4.081752 TGTGCAGTTTGACTTTGACCAAAT 60.082 37.500 0.00 0.00 35.14 2.32
206 207 3.256879 TGTGCAGTTTGACTTTGACCAAA 59.743 39.130 0.00 0.00 0.00 3.28
207 208 2.822561 TGTGCAGTTTGACTTTGACCAA 59.177 40.909 0.00 0.00 0.00 3.67
208 209 2.441410 TGTGCAGTTTGACTTTGACCA 58.559 42.857 0.00 0.00 0.00 4.02
209 210 3.502191 TTGTGCAGTTTGACTTTGACC 57.498 42.857 0.00 0.00 0.00 4.02
210 211 4.485163 ACTTTGTGCAGTTTGACTTTGAC 58.515 39.130 0.00 0.00 0.00 3.18
211 212 4.782019 ACTTTGTGCAGTTTGACTTTGA 57.218 36.364 0.00 0.00 0.00 2.69
212 213 5.844301 AAACTTTGTGCAGTTTGACTTTG 57.156 34.783 1.37 0.00 43.88 2.77
219 220 3.951775 TGGTCAAACTTTGTGCAGTTT 57.048 38.095 1.44 0.00 46.00 2.66
220 221 3.258123 ACTTGGTCAAACTTTGTGCAGTT 59.742 39.130 1.44 0.00 38.74 3.16
221 222 2.825532 ACTTGGTCAAACTTTGTGCAGT 59.174 40.909 1.44 0.00 0.00 4.40
222 223 3.129287 AGACTTGGTCAAACTTTGTGCAG 59.871 43.478 1.44 0.00 34.60 4.41
223 224 3.088532 AGACTTGGTCAAACTTTGTGCA 58.911 40.909 1.44 0.00 34.60 4.57
224 225 3.782889 AGACTTGGTCAAACTTTGTGC 57.217 42.857 1.44 0.00 34.60 4.57
282 283 8.335356 GCACAATGAAACGTATGTTCATACTAT 58.665 33.333 12.96 6.22 37.31 2.12
283 284 7.332182 TGCACAATGAAACGTATGTTCATACTA 59.668 33.333 12.96 0.00 37.31 1.82
284 285 6.148645 TGCACAATGAAACGTATGTTCATACT 59.851 34.615 12.96 0.00 37.31 2.12
285 286 6.310960 TGCACAATGAAACGTATGTTCATAC 58.689 36.000 12.96 11.56 37.31 2.39
286 287 6.487689 TGCACAATGAAACGTATGTTCATA 57.512 33.333 12.96 0.00 37.31 2.15
287 288 5.369685 TGCACAATGAAACGTATGTTCAT 57.630 34.783 7.91 7.91 37.31 2.57
288 289 4.820284 TGCACAATGAAACGTATGTTCA 57.180 36.364 0.00 3.78 37.31 3.18
289 290 5.509272 CAGATGCACAATGAAACGTATGTTC 59.491 40.000 0.00 0.00 37.31 3.18
290 291 5.181056 TCAGATGCACAATGAAACGTATGTT 59.819 36.000 0.00 0.00 40.98 2.71
291 292 4.694982 TCAGATGCACAATGAAACGTATGT 59.305 37.500 0.00 0.00 0.00 2.29
292 293 5.220557 TCAGATGCACAATGAAACGTATG 57.779 39.130 0.00 0.00 0.00 2.39
293 294 7.552458 TTATCAGATGCACAATGAAACGTAT 57.448 32.000 0.00 0.00 0.00 3.06
294 295 6.976636 TTATCAGATGCACAATGAAACGTA 57.023 33.333 0.00 0.00 0.00 3.57
295 296 5.878332 TTATCAGATGCACAATGAAACGT 57.122 34.783 0.00 0.00 0.00 3.99
358 359 9.998106 TCAAGCTTTATAGAGTTTGACTAACTT 57.002 29.630 15.67 0.00 47.00 2.66
366 367 8.017946 GGTCAAAGTCAAGCTTTATAGAGTTTG 58.982 37.037 24.99 24.99 44.95 2.93
367 368 7.719633 TGGTCAAAGTCAAGCTTTATAGAGTTT 59.280 33.333 10.15 10.15 44.95 2.66
368 369 7.224297 TGGTCAAAGTCAAGCTTTATAGAGTT 58.776 34.615 0.00 0.00 44.95 3.01
369 370 6.769512 TGGTCAAAGTCAAGCTTTATAGAGT 58.230 36.000 0.00 0.00 44.95 3.24
370 371 7.672983 TTGGTCAAAGTCAAGCTTTATAGAG 57.327 36.000 0.00 0.00 44.95 2.43
371 372 7.040686 GGTTTGGTCAAAGTCAAGCTTTATAGA 60.041 37.037 0.00 0.00 44.95 1.98
372 373 7.040409 AGGTTTGGTCAAAGTCAAGCTTTATAG 60.040 37.037 0.00 0.00 44.95 1.31
373 374 6.775629 AGGTTTGGTCAAAGTCAAGCTTTATA 59.224 34.615 0.00 0.00 44.95 0.98
374 375 5.598417 AGGTTTGGTCAAAGTCAAGCTTTAT 59.402 36.000 0.00 0.00 44.95 1.40
375 376 4.953579 AGGTTTGGTCAAAGTCAAGCTTTA 59.046 37.500 0.00 0.00 44.95 1.85
377 378 3.365472 AGGTTTGGTCAAAGTCAAGCTT 58.635 40.909 0.00 0.00 39.52 3.74
378 379 3.018423 AGGTTTGGTCAAAGTCAAGCT 57.982 42.857 0.00 0.00 0.00 3.74
379 380 3.801114 AAGGTTTGGTCAAAGTCAAGC 57.199 42.857 0.00 0.00 0.00 4.01
380 381 8.388103 CGTATATAAGGTTTGGTCAAAGTCAAG 58.612 37.037 0.00 0.00 0.00 3.02
381 382 7.334921 CCGTATATAAGGTTTGGTCAAAGTCAA 59.665 37.037 6.55 0.00 0.00 3.18
382 383 6.819649 CCGTATATAAGGTTTGGTCAAAGTCA 59.180 38.462 6.55 0.00 0.00 3.41
383 384 7.043565 TCCGTATATAAGGTTTGGTCAAAGTC 58.956 38.462 13.56 0.00 0.00 3.01
384 385 6.949715 TCCGTATATAAGGTTTGGTCAAAGT 58.050 36.000 13.56 0.00 0.00 2.66
385 386 8.446599 AATCCGTATATAAGGTTTGGTCAAAG 57.553 34.615 13.56 0.00 0.00 2.77
386 387 9.902684 TTAATCCGTATATAAGGTTTGGTCAAA 57.097 29.630 16.73 4.74 0.00 2.69
387 388 9.902684 TTTAATCCGTATATAAGGTTTGGTCAA 57.097 29.630 16.73 5.01 0.00 3.18
388 389 9.902684 TTTTAATCCGTATATAAGGTTTGGTCA 57.097 29.630 16.73 0.00 0.00 4.02
401 402 9.908747 TCCCTTCATTTCTTTTTAATCCGTATA 57.091 29.630 0.00 0.00 0.00 1.47
402 403 8.817092 TCCCTTCATTTCTTTTTAATCCGTAT 57.183 30.769 0.00 0.00 0.00 3.06
403 404 7.886446 ACTCCCTTCATTTCTTTTTAATCCGTA 59.114 33.333 0.00 0.00 0.00 4.02
404 405 6.719829 ACTCCCTTCATTTCTTTTTAATCCGT 59.280 34.615 0.00 0.00 0.00 4.69
405 406 7.158099 ACTCCCTTCATTTCTTTTTAATCCG 57.842 36.000 0.00 0.00 0.00 4.18
406 407 9.244292 AGTACTCCCTTCATTTCTTTTTAATCC 57.756 33.333 0.00 0.00 0.00 3.01
410 411 8.357402 GCAAAGTACTCCCTTCATTTCTTTTTA 58.643 33.333 0.00 0.00 0.00 1.52
411 412 7.147742 TGCAAAGTACTCCCTTCATTTCTTTTT 60.148 33.333 0.00 0.00 0.00 1.94
412 413 6.323739 TGCAAAGTACTCCCTTCATTTCTTTT 59.676 34.615 0.00 0.00 0.00 2.27
413 414 5.833131 TGCAAAGTACTCCCTTCATTTCTTT 59.167 36.000 0.00 0.00 0.00 2.52
414 415 5.241728 GTGCAAAGTACTCCCTTCATTTCTT 59.758 40.000 0.00 0.00 0.00 2.52
415 416 4.762251 GTGCAAAGTACTCCCTTCATTTCT 59.238 41.667 0.00 0.00 0.00 2.52
416 417 4.762251 AGTGCAAAGTACTCCCTTCATTTC 59.238 41.667 0.00 0.00 0.00 2.17
417 418 4.729868 AGTGCAAAGTACTCCCTTCATTT 58.270 39.130 0.00 0.00 0.00 2.32
418 419 4.373156 AGTGCAAAGTACTCCCTTCATT 57.627 40.909 0.00 0.00 0.00 2.57
419 420 5.700402 ATAGTGCAAAGTACTCCCTTCAT 57.300 39.130 0.00 0.00 0.00 2.57
420 421 6.808321 ATATAGTGCAAAGTACTCCCTTCA 57.192 37.500 0.00 0.00 0.00 3.02
421 422 8.179509 TCTATATAGTGCAAAGTACTCCCTTC 57.820 38.462 9.58 0.00 0.00 3.46
422 423 8.728596 ATCTATATAGTGCAAAGTACTCCCTT 57.271 34.615 9.58 0.00 0.00 3.95
423 424 9.469097 CTATCTATATAGTGCAAAGTACTCCCT 57.531 37.037 9.58 0.00 31.96 4.20
424 425 9.245481 ACTATCTATATAGTGCAAAGTACTCCC 57.755 37.037 9.58 0.00 45.34 4.30
470 471 8.636213 GGGAGTAACTTGTACTAGTGCAATATA 58.364 37.037 24.06 17.12 34.80 0.86
471 472 7.418712 GGGGAGTAACTTGTACTAGTGCAATAT 60.419 40.741 24.06 17.98 34.80 1.28
472 473 6.127253 GGGGAGTAACTTGTACTAGTGCAATA 60.127 42.308 24.06 13.45 34.80 1.90
473 474 5.338137 GGGGAGTAACTTGTACTAGTGCAAT 60.338 44.000 24.06 14.38 34.80 3.56
474 475 4.020839 GGGGAGTAACTTGTACTAGTGCAA 60.021 45.833 22.72 22.72 34.18 4.08
475 476 3.512724 GGGGAGTAACTTGTACTAGTGCA 59.487 47.826 9.84 9.84 0.00 4.57
476 477 3.512724 TGGGGAGTAACTTGTACTAGTGC 59.487 47.826 10.78 4.49 0.00 4.40
477 478 4.771054 AGTGGGGAGTAACTTGTACTAGTG 59.229 45.833 10.78 0.00 0.00 2.74
478 479 5.008165 AGTGGGGAGTAACTTGTACTAGT 57.992 43.478 3.98 3.98 0.00 2.57
479 480 6.832384 TCATAGTGGGGAGTAACTTGTACTAG 59.168 42.308 2.56 2.56 0.00 2.57
480 481 6.604795 GTCATAGTGGGGAGTAACTTGTACTA 59.395 42.308 0.00 0.00 0.00 1.82
481 482 5.421374 GTCATAGTGGGGAGTAACTTGTACT 59.579 44.000 0.00 0.00 0.00 2.73
482 483 5.394993 GGTCATAGTGGGGAGTAACTTGTAC 60.395 48.000 0.00 0.00 0.00 2.90
483 484 4.713321 GGTCATAGTGGGGAGTAACTTGTA 59.287 45.833 0.00 0.00 0.00 2.41
484 485 3.518303 GGTCATAGTGGGGAGTAACTTGT 59.482 47.826 0.00 0.00 0.00 3.16
485 486 3.517901 TGGTCATAGTGGGGAGTAACTTG 59.482 47.826 0.00 0.00 0.00 3.16
486 487 3.775316 CTGGTCATAGTGGGGAGTAACTT 59.225 47.826 0.00 0.00 0.00 2.66
487 488 3.375699 CTGGTCATAGTGGGGAGTAACT 58.624 50.000 0.00 0.00 0.00 2.24
488 489 2.158943 GCTGGTCATAGTGGGGAGTAAC 60.159 54.545 0.00 0.00 0.00 2.50
489 490 2.116238 GCTGGTCATAGTGGGGAGTAA 58.884 52.381 0.00 0.00 0.00 2.24
490 491 1.691482 GGCTGGTCATAGTGGGGAGTA 60.691 57.143 0.00 0.00 0.00 2.59
491 492 0.983378 GGCTGGTCATAGTGGGGAGT 60.983 60.000 0.00 0.00 0.00 3.85
492 493 0.692419 AGGCTGGTCATAGTGGGGAG 60.692 60.000 0.00 0.00 0.00 4.30
493 494 0.639943 TAGGCTGGTCATAGTGGGGA 59.360 55.000 0.00 0.00 0.00 4.81
494 495 1.141053 GTTAGGCTGGTCATAGTGGGG 59.859 57.143 0.00 0.00 0.00 4.96
495 496 1.141053 GGTTAGGCTGGTCATAGTGGG 59.859 57.143 0.00 0.00 0.00 4.61
496 497 1.837439 TGGTTAGGCTGGTCATAGTGG 59.163 52.381 0.00 0.00 0.00 4.00
497 498 3.845781 ATGGTTAGGCTGGTCATAGTG 57.154 47.619 0.00 0.00 0.00 2.74
498 499 4.227300 TGAAATGGTTAGGCTGGTCATAGT 59.773 41.667 0.00 0.00 0.00 2.12
499 500 4.780815 TGAAATGGTTAGGCTGGTCATAG 58.219 43.478 0.00 0.00 0.00 2.23
500 501 4.853468 TGAAATGGTTAGGCTGGTCATA 57.147 40.909 0.00 0.00 0.00 2.15
501 502 3.737559 TGAAATGGTTAGGCTGGTCAT 57.262 42.857 0.00 0.00 0.00 3.06
502 503 3.737559 ATGAAATGGTTAGGCTGGTCA 57.262 42.857 0.00 0.00 0.00 4.02
503 504 3.883489 GGTATGAAATGGTTAGGCTGGTC 59.117 47.826 0.00 0.00 0.00 4.02
504 505 3.268334 TGGTATGAAATGGTTAGGCTGGT 59.732 43.478 0.00 0.00 0.00 4.00
505 506 3.897239 TGGTATGAAATGGTTAGGCTGG 58.103 45.455 0.00 0.00 0.00 4.85
506 507 5.829924 AGATTGGTATGAAATGGTTAGGCTG 59.170 40.000 0.00 0.00 0.00 4.85
507 508 6.018433 AGATTGGTATGAAATGGTTAGGCT 57.982 37.500 0.00 0.00 0.00 4.58
508 509 5.241728 GGAGATTGGTATGAAATGGTTAGGC 59.758 44.000 0.00 0.00 0.00 3.93
509 510 6.263168 GTGGAGATTGGTATGAAATGGTTAGG 59.737 42.308 0.00 0.00 0.00 2.69
523 524 1.355381 TCCAGCATTGTGGAGATTGGT 59.645 47.619 4.48 0.00 41.99 3.67
571 572 7.452880 AACGTTTAAGGTTAATACCCCTTTC 57.547 36.000 0.91 0.00 46.28 2.62
631 818 2.322638 TTTTGCTTTGTGGGGCTGGC 62.323 55.000 0.00 0.00 0.00 4.85
752 939 4.343231 AGACAGCAATGAGAGAGAGAGAA 58.657 43.478 0.00 0.00 0.00 2.87
1077 1312 1.923204 CGAGCGAGAATTGAAGGACAG 59.077 52.381 0.00 0.00 0.00 3.51
1127 1370 3.498121 CCATGAAGAAGCTGGCTATGGAT 60.498 47.826 13.20 0.00 36.56 3.41
2009 2252 2.672307 GGAACTGCTGCTGCTGCT 60.672 61.111 27.67 11.62 41.07 4.24
2010 2253 3.745803 GGGAACTGCTGCTGCTGC 61.746 66.667 22.51 22.51 41.07 5.25
2011 2254 3.429141 CGGGAACTGCTGCTGCTG 61.429 66.667 18.66 18.66 42.70 4.41
2233 2476 4.740235 GCGTAGAGCCTCCATCAC 57.260 61.111 0.00 0.00 40.81 3.06
2367 2610 3.119245 ACTGCGGTGTATACTACAACAGG 60.119 47.826 19.15 5.29 46.59 4.00
2406 2649 1.793258 CATCTCTTCTAGCCATGCCG 58.207 55.000 0.00 0.00 0.00 5.69
2407 2650 1.202734 TGCATCTCTTCTAGCCATGCC 60.203 52.381 0.00 0.00 39.33 4.40
2409 2652 3.189618 TGTGCATCTCTTCTAGCCATG 57.810 47.619 0.00 0.00 0.00 3.66
2410 2653 3.741249 CATGTGCATCTCTTCTAGCCAT 58.259 45.455 0.00 0.00 0.00 4.40
2411 2654 2.744166 GCATGTGCATCTCTTCTAGCCA 60.744 50.000 0.00 0.00 41.59 4.75
2412 2655 1.872313 GCATGTGCATCTCTTCTAGCC 59.128 52.381 0.00 0.00 41.59 3.93
2491 2734 3.624861 GCGCTTCTACAGTACTAGTACCA 59.375 47.826 25.97 12.90 36.75 3.25
2566 2817 5.689961 GGTGCAAAAGTGTTACTAACCAATG 59.310 40.000 0.00 0.00 0.00 2.82
2567 2818 5.221362 GGGTGCAAAAGTGTTACTAACCAAT 60.221 40.000 0.00 0.00 0.00 3.16
2568 2819 4.098196 GGGTGCAAAAGTGTTACTAACCAA 59.902 41.667 0.00 0.00 0.00 3.67
2569 2820 3.633065 GGGTGCAAAAGTGTTACTAACCA 59.367 43.478 0.00 0.00 0.00 3.67
2570 2821 3.633065 TGGGTGCAAAAGTGTTACTAACC 59.367 43.478 0.00 0.00 0.00 2.85
2571 2822 4.904253 TGGGTGCAAAAGTGTTACTAAC 57.096 40.909 0.00 0.00 0.00 2.34
2572 2823 6.276847 CAAATGGGTGCAAAAGTGTTACTAA 58.723 36.000 0.00 0.00 0.00 2.24
2573 2824 5.221342 CCAAATGGGTGCAAAAGTGTTACTA 60.221 40.000 0.00 0.00 0.00 1.82
2574 2825 4.442753 CCAAATGGGTGCAAAAGTGTTACT 60.443 41.667 0.00 0.00 0.00 2.24
2575 2826 3.807071 CCAAATGGGTGCAAAAGTGTTAC 59.193 43.478 0.00 0.00 0.00 2.50
2597 2848 1.674962 CGTACTACTACCCTGGCAGAC 59.325 57.143 17.94 1.29 0.00 3.51
2604 2855 3.659183 ATGGACACGTACTACTACCCT 57.341 47.619 0.00 0.00 0.00 4.34
2605 2856 3.445096 ACAATGGACACGTACTACTACCC 59.555 47.826 0.00 0.00 0.00 3.69
2606 2857 4.082571 ACACAATGGACACGTACTACTACC 60.083 45.833 0.00 0.00 0.00 3.18
2607 2858 5.051891 ACACAATGGACACGTACTACTAC 57.948 43.478 0.00 0.00 0.00 2.73
2608 2859 5.710513 AACACAATGGACACGTACTACTA 57.289 39.130 0.00 0.00 0.00 1.82
2609 2860 4.595762 AACACAATGGACACGTACTACT 57.404 40.909 0.00 0.00 0.00 2.57
2722 2975 4.249638 TCTCCAATCCCCAAGTAAATGG 57.750 45.455 0.00 0.00 40.35 3.16
2890 3151 2.162608 AGCTAGTGTGACGTGATCAGTC 59.837 50.000 14.67 14.67 38.28 3.51
3103 3365 6.905736 TGCTGATTTACAAATAGGACCCATA 58.094 36.000 0.00 0.00 0.00 2.74
3126 3388 5.723295 AGTTTGGCTAGGCATTTTTACATG 58.277 37.500 20.94 0.00 0.00 3.21
3282 3544 8.375506 AGACATCTAACCATCAGTTGAGTTAAA 58.624 33.333 0.00 0.00 39.67 1.52
3286 3548 7.343057 TCATAGACATCTAACCATCAGTTGAGT 59.657 37.037 0.00 0.00 39.67 3.41
3312 3574 9.541884 AGTTAAGTTCCCACCACATATAAATTT 57.458 29.630 0.00 0.00 0.00 1.82
3331 3593 5.643777 GGACATGTTCATGTGCTAGTTAAGT 59.356 40.000 23.27 0.00 39.39 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.