Multiple sequence alignment - TraesCS4A01G097700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G097700 chr4A 100.000 7346 0 0 1 7346 108747559 108754904 0.000000e+00 13566
1 TraesCS4A01G097700 chr4D 96.980 3079 67 11 4269 7342 356885830 356882773 0.000000e+00 5147
2 TraesCS4A01G097700 chr4D 93.905 2346 76 27 486 2794 356889954 356887639 0.000000e+00 3478
3 TraesCS4A01G097700 chr4D 91.866 1168 52 13 2791 3943 356887212 356886073 0.000000e+00 1591
4 TraesCS4A01G097700 chr4D 88.154 363 10 12 152 496 356894624 356894277 1.150000e-107 401
5 TraesCS4A01G097700 chr4D 96.377 138 5 0 3937 4074 356885952 356885815 2.060000e-55 228
6 TraesCS4A01G097700 chr4B 91.484 3429 121 64 152 3492 440334938 440331593 0.000000e+00 4556
7 TraesCS4A01G097700 chr4B 96.234 2629 68 10 4269 6873 440330075 440327454 0.000000e+00 4277
8 TraesCS4A01G097700 chr4B 93.172 454 24 4 3489 3938 440330776 440330326 0.000000e+00 660
9 TraesCS4A01G097700 chr4B 92.470 332 16 3 7012 7342 440327323 440327000 4.010000e-127 466
10 TraesCS4A01G097700 chr4B 96.377 138 5 0 3937 4074 440330197 440330060 2.060000e-55 228
11 TraesCS4A01G097700 chr5D 91.005 189 16 1 4084 4271 407985127 407984939 3.400000e-63 254
12 TraesCS4A01G097700 chr5D 94.156 154 8 1 1 153 198477398 198477551 4.430000e-57 233
13 TraesCS4A01G097700 chr5D 84.211 190 28 2 4084 4272 481571283 481571471 4.530000e-42 183
14 TraesCS4A01G097700 chr1A 89.005 191 19 2 4084 4273 328717187 328716998 1.230000e-57 235
15 TraesCS4A01G097700 chr3B 90.909 176 10 6 1 170 172057334 172057509 1.590000e-56 231
16 TraesCS4A01G097700 chr1B 88.889 189 19 2 4084 4271 356982317 356982504 1.590000e-56 231
17 TraesCS4A01G097700 chr1B 82.902 193 26 6 4084 4273 415465729 415465541 4.560000e-37 167
18 TraesCS4A01G097700 chr6D 93.038 158 9 2 1 156 445766539 445766382 5.730000e-56 230
19 TraesCS4A01G097700 chr6D 89.011 182 13 7 1 178 392278731 392278553 1.240000e-52 219
20 TraesCS4A01G097700 chr2D 93.548 155 9 1 1 154 580455271 580455117 5.730000e-56 230
21 TraesCS4A01G097700 chr2D 92.405 158 11 1 1 157 623354531 623354688 2.670000e-54 224
22 TraesCS4A01G097700 chr7D 90.286 175 15 2 1 173 163563489 163563663 2.060000e-55 228
23 TraesCS4A01G097700 chr7D 83.333 192 29 3 4084 4273 564305981 564306171 2.720000e-39 174
24 TraesCS4A01G097700 chr7B 92.994 157 10 1 1 156 548113862 548113706 2.060000e-55 228
25 TraesCS4A01G097700 chr5A 92.453 159 11 1 1 158 44602726 44602568 7.420000e-55 226
26 TraesCS4A01G097700 chr5B 85.714 189 24 3 4084 4271 704832933 704833119 5.810000e-46 196
27 TraesCS4A01G097700 chr6B 83.854 192 25 5 4084 4272 545213072 545212884 2.110000e-40 178
28 TraesCS4A01G097700 chr3A 83.077 195 26 7 4084 4274 685360760 685360569 3.520000e-38 171


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G097700 chr4A 108747559 108754904 7345 False 13566.0 13566 100.0000 1 7346 1 chr4A.!!$F1 7345
1 TraesCS4A01G097700 chr4D 356882773 356889954 7181 True 2611.0 5147 94.7820 486 7342 4 chr4D.!!$R2 6856
2 TraesCS4A01G097700 chr4B 440327000 440334938 7938 True 2037.4 4556 93.9474 152 7342 5 chr4B.!!$R1 7190

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
252 254 0.109873 CGAGTCCTTCGTTACGCACT 60.110 55.0 0.00 0.0 44.27 4.40 F
584 639 0.321298 GCCGCCTCTGGTTAGAAACA 60.321 55.0 0.00 0.0 31.21 2.83 F
1710 1793 0.108615 CGGGCCAGAGTAGTTGACAG 60.109 60.0 4.39 0.0 0.00 3.51 F
2328 2418 1.194781 GCACAGAGACTGGGGAGGAA 61.195 60.0 3.22 0.0 35.08 3.36 F
2866 3403 0.107508 TCTATGTTGCTCAGCCCTGC 60.108 55.0 0.00 0.0 0.00 4.85 F
3153 3693 0.244450 AAATGTGCCCTGCGATGTTG 59.756 50.0 0.00 0.0 0.00 3.33 F
4139 5635 0.588252 CCTCTTTGTTGAGGTGTGCG 59.412 55.0 2.62 0.0 46.33 5.34 F
4142 5638 0.029300 CTTTGTTGAGGTGTGCGTGG 59.971 55.0 0.00 0.0 0.00 4.94 F
4148 5644 0.036765 TGAGGTGTGCGTGGGTTATC 60.037 55.0 0.00 0.0 0.00 1.75 F
4223 5719 0.037790 ACCGAGCAACTCTCTTCTGC 60.038 55.0 0.00 0.0 39.70 4.26 F
6159 7656 0.895559 GCACAGACAGGGGGAAAAGG 60.896 60.0 0.00 0.0 0.00 3.11 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1673 1756 0.887247 CGGCATTGATTTGACACCCA 59.113 50.000 0.00 0.0 0.00 4.51 R
2328 2418 0.038166 ACGCATTCTCCAACCACCAT 59.962 50.000 0.00 0.0 0.00 3.55 R
2535 2627 1.096416 CGAGTACACCCTCTCCACTC 58.904 60.000 0.00 0.0 33.78 3.51 R
4123 5619 0.029300 CCACGCACACCTCAACAAAG 59.971 55.000 0.00 0.0 0.00 2.77 R
4129 5625 0.036765 GATAACCCACGCACACCTCA 60.037 55.000 0.00 0.0 0.00 3.86 R
4142 5638 0.168128 GCGGCACACACAAGATAACC 59.832 55.000 0.00 0.0 0.00 2.85 R
6063 7560 0.594602 GATGCTGTTGCTGCTGTTCA 59.405 50.000 0.00 0.0 40.48 3.18 R
6156 7653 1.168714 GCAACTGGATCGCTTTCCTT 58.831 50.000 3.76 0.0 36.68 3.36 R
6159 7656 1.806542 TCAAGCAACTGGATCGCTTTC 59.193 47.619 2.46 0.0 43.23 2.62 R
6245 7742 0.250770 GGACAGGGTTTGGGACTGAC 60.251 60.000 0.00 0.0 36.17 3.51 R
7174 8733 0.321298 CAAGTCCTACCCACCGTTGG 60.321 60.000 0.00 0.0 43.50 3.77 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 7.258441 GTTCCCAAATATTTGTCTTTCTAGGC 58.742 38.462 23.24 3.57 36.45 3.93
26 27 6.489603 TCCCAAATATTTGTCTTTCTAGGCA 58.510 36.000 23.24 5.94 36.45 4.75
27 28 7.125391 TCCCAAATATTTGTCTTTCTAGGCAT 58.875 34.615 23.24 0.00 35.56 4.40
28 29 7.619302 TCCCAAATATTTGTCTTTCTAGGCATT 59.381 33.333 23.24 0.00 35.56 3.56
29 30 8.260114 CCCAAATATTTGTCTTTCTAGGCATTT 58.740 33.333 23.24 0.00 35.56 2.32
30 31 9.305925 CCAAATATTTGTCTTTCTAGGCATTTC 57.694 33.333 23.24 0.00 35.56 2.17
31 32 9.859427 CAAATATTTGTCTTTCTAGGCATTTCA 57.141 29.630 18.32 0.00 35.56 2.69
35 36 8.767478 ATTTGTCTTTCTAGGCATTTCAAATG 57.233 30.769 5.68 5.68 35.56 2.32
36 37 6.271488 TGTCTTTCTAGGCATTTCAAATGG 57.729 37.500 12.14 0.00 29.10 3.16
37 38 6.009589 TGTCTTTCTAGGCATTTCAAATGGA 58.990 36.000 12.14 0.00 29.10 3.41
38 39 6.071952 TGTCTTTCTAGGCATTTCAAATGGAC 60.072 38.462 12.14 8.23 29.10 4.02
39 40 6.009589 TCTTTCTAGGCATTTCAAATGGACA 58.990 36.000 12.14 0.00 0.00 4.02
40 41 5.643379 TTCTAGGCATTTCAAATGGACAC 57.357 39.130 12.14 0.00 0.00 3.67
41 42 4.661222 TCTAGGCATTTCAAATGGACACA 58.339 39.130 12.14 0.00 0.00 3.72
42 43 5.076182 TCTAGGCATTTCAAATGGACACAA 58.924 37.500 12.14 0.00 0.00 3.33
43 44 4.895668 AGGCATTTCAAATGGACACAAT 57.104 36.364 12.14 0.00 0.00 2.71
44 45 5.999205 AGGCATTTCAAATGGACACAATA 57.001 34.783 12.14 0.00 0.00 1.90
45 46 6.549433 AGGCATTTCAAATGGACACAATAT 57.451 33.333 12.14 0.00 0.00 1.28
46 47 7.658525 AGGCATTTCAAATGGACACAATATA 57.341 32.000 12.14 0.00 0.00 0.86
47 48 7.491682 AGGCATTTCAAATGGACACAATATAC 58.508 34.615 12.14 0.00 0.00 1.47
48 49 6.417635 GGCATTTCAAATGGACACAATATACG 59.582 38.462 12.14 0.00 0.00 3.06
49 50 6.417635 GCATTTCAAATGGACACAATATACGG 59.582 38.462 12.14 0.00 0.00 4.02
50 51 7.680827 GCATTTCAAATGGACACAATATACGGA 60.681 37.037 12.14 0.00 0.00 4.69
51 52 7.873719 TTTCAAATGGACACAATATACGGAT 57.126 32.000 0.00 0.00 0.00 4.18
52 53 6.859420 TCAAATGGACACAATATACGGATG 57.141 37.500 0.00 0.00 0.00 3.51
53 54 6.353323 TCAAATGGACACAATATACGGATGT 58.647 36.000 0.00 0.00 0.00 3.06
54 55 7.501844 TCAAATGGACACAATATACGGATGTA 58.498 34.615 0.00 0.00 34.45 2.29
55 56 8.154203 TCAAATGGACACAATATACGGATGTAT 58.846 33.333 0.00 0.00 43.62 2.29
56 57 7.905604 AATGGACACAATATACGGATGTATG 57.094 36.000 0.00 0.00 41.37 2.39
57 58 6.413783 TGGACACAATATACGGATGTATGT 57.586 37.500 0.00 0.00 41.37 2.29
58 59 7.527568 TGGACACAATATACGGATGTATGTA 57.472 36.000 0.00 0.00 41.37 2.29
59 60 7.599171 TGGACACAATATACGGATGTATGTAG 58.401 38.462 0.00 0.00 41.37 2.74
60 61 7.449086 TGGACACAATATACGGATGTATGTAGA 59.551 37.037 0.00 0.00 41.37 2.59
61 62 7.754027 GGACACAATATACGGATGTATGTAGAC 59.246 40.741 0.00 0.00 41.37 2.59
62 63 8.173542 ACACAATATACGGATGTATGTAGACA 57.826 34.615 0.00 0.00 41.37 3.41
63 64 8.803235 ACACAATATACGGATGTATGTAGACAT 58.197 33.333 0.08 0.08 41.37 3.06
113 114 7.878477 TTACTTCGTATGTAGTCTTTGTTGG 57.122 36.000 0.00 0.00 0.00 3.77
114 115 6.092955 ACTTCGTATGTAGTCTTTGTTGGA 57.907 37.500 0.00 0.00 0.00 3.53
115 116 6.518493 ACTTCGTATGTAGTCTTTGTTGGAA 58.482 36.000 0.00 0.00 0.00 3.53
116 117 7.159372 ACTTCGTATGTAGTCTTTGTTGGAAT 58.841 34.615 0.00 0.00 0.00 3.01
117 118 7.331193 ACTTCGTATGTAGTCTTTGTTGGAATC 59.669 37.037 0.00 0.00 0.00 2.52
118 119 6.931838 TCGTATGTAGTCTTTGTTGGAATCT 58.068 36.000 0.00 0.00 0.00 2.40
119 120 7.033791 TCGTATGTAGTCTTTGTTGGAATCTC 58.966 38.462 0.00 0.00 0.00 2.75
120 121 7.036220 CGTATGTAGTCTTTGTTGGAATCTCT 58.964 38.462 0.00 0.00 0.00 3.10
121 122 8.188799 CGTATGTAGTCTTTGTTGGAATCTCTA 58.811 37.037 0.00 0.00 0.00 2.43
122 123 9.522804 GTATGTAGTCTTTGTTGGAATCTCTAG 57.477 37.037 0.00 0.00 0.00 2.43
123 124 7.776618 TGTAGTCTTTGTTGGAATCTCTAGA 57.223 36.000 0.00 0.00 0.00 2.43
124 125 8.190326 TGTAGTCTTTGTTGGAATCTCTAGAA 57.810 34.615 0.00 0.00 0.00 2.10
125 126 8.647796 TGTAGTCTTTGTTGGAATCTCTAGAAA 58.352 33.333 0.00 0.00 0.00 2.52
126 127 9.145865 GTAGTCTTTGTTGGAATCTCTAGAAAG 57.854 37.037 0.00 0.00 0.00 2.62
127 128 7.967908 AGTCTTTGTTGGAATCTCTAGAAAGA 58.032 34.615 0.00 0.00 0.00 2.52
128 129 7.875554 AGTCTTTGTTGGAATCTCTAGAAAGAC 59.124 37.037 17.81 17.81 44.19 3.01
129 130 7.657761 GTCTTTGTTGGAATCTCTAGAAAGACA 59.342 37.037 19.15 4.20 43.70 3.41
130 131 8.210946 TCTTTGTTGGAATCTCTAGAAAGACAA 58.789 33.333 0.00 0.00 0.00 3.18
131 132 7.730364 TTGTTGGAATCTCTAGAAAGACAAC 57.270 36.000 14.84 14.84 36.97 3.32
132 133 7.067496 TGTTGGAATCTCTAGAAAGACAACT 57.933 36.000 19.09 0.00 37.25 3.16
133 134 8.190326 TGTTGGAATCTCTAGAAAGACAACTA 57.810 34.615 19.09 9.55 37.25 2.24
134 135 8.816894 TGTTGGAATCTCTAGAAAGACAACTAT 58.183 33.333 19.09 0.00 37.25 2.12
135 136 9.660180 GTTGGAATCTCTAGAAAGACAACTATT 57.340 33.333 14.61 0.00 34.50 1.73
137 138 9.658799 TGGAATCTCTAGAAAGACAACTATTTG 57.341 33.333 0.00 0.00 38.83 2.32
138 139 9.103861 GGAATCTCTAGAAAGACAACTATTTGG 57.896 37.037 0.00 0.00 37.00 3.28
139 140 9.877178 GAATCTCTAGAAAGACAACTATTTGGA 57.123 33.333 0.00 0.00 37.00 3.53
142 143 9.490379 TCTCTAGAAAGACAACTATTTGGAAAC 57.510 33.333 0.00 0.00 37.00 2.78
143 144 8.306680 TCTAGAAAGACAACTATTTGGAAACG 57.693 34.615 0.00 0.00 37.00 3.60
144 145 6.313744 AGAAAGACAACTATTTGGAAACGG 57.686 37.500 0.00 0.00 37.00 4.44
145 146 6.059484 AGAAAGACAACTATTTGGAAACGGA 58.941 36.000 0.00 0.00 37.00 4.69
146 147 5.941948 AAGACAACTATTTGGAAACGGAG 57.058 39.130 0.00 0.00 37.00 4.63
147 148 4.324267 AGACAACTATTTGGAAACGGAGG 58.676 43.478 0.00 0.00 37.00 4.30
148 149 3.418047 ACAACTATTTGGAAACGGAGGG 58.582 45.455 0.00 0.00 37.00 4.30
149 150 3.073356 ACAACTATTTGGAAACGGAGGGA 59.927 43.478 0.00 0.00 37.00 4.20
150 151 3.629142 ACTATTTGGAAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
190 191 7.714377 TGCATTTGTCATTTAGTTTGACCAAAT 59.286 29.630 0.00 0.00 42.25 2.32
250 252 4.853507 CGAGTCCTTCGTTACGCA 57.146 55.556 0.00 0.00 44.27 5.24
251 253 2.346884 CGAGTCCTTCGTTACGCAC 58.653 57.895 0.00 0.00 44.27 5.34
252 254 0.109873 CGAGTCCTTCGTTACGCACT 60.110 55.000 0.00 0.00 44.27 4.40
253 255 1.129251 CGAGTCCTTCGTTACGCACTA 59.871 52.381 0.00 0.00 44.27 2.74
254 256 2.223203 CGAGTCCTTCGTTACGCACTAT 60.223 50.000 0.00 0.00 44.27 2.12
255 257 3.001634 CGAGTCCTTCGTTACGCACTATA 59.998 47.826 0.00 0.00 44.27 1.31
256 258 4.319333 CGAGTCCTTCGTTACGCACTATAT 60.319 45.833 0.00 0.00 44.27 0.86
257 259 5.107337 CGAGTCCTTCGTTACGCACTATATA 60.107 44.000 0.00 0.00 44.27 0.86
258 260 6.564686 CGAGTCCTTCGTTACGCACTATATAA 60.565 42.308 0.00 0.00 44.27 0.98
259 261 6.666417 AGTCCTTCGTTACGCACTATATAAG 58.334 40.000 0.00 0.00 0.00 1.73
260 262 6.484643 AGTCCTTCGTTACGCACTATATAAGA 59.515 38.462 0.00 0.00 0.00 2.10
261 263 7.012704 AGTCCTTCGTTACGCACTATATAAGAA 59.987 37.037 0.00 0.00 0.00 2.52
262 264 7.645340 GTCCTTCGTTACGCACTATATAAGAAA 59.355 37.037 0.00 0.00 0.00 2.52
263 265 7.859377 TCCTTCGTTACGCACTATATAAGAAAG 59.141 37.037 0.00 0.00 0.00 2.62
264 266 7.646922 CCTTCGTTACGCACTATATAAGAAAGT 59.353 37.037 0.00 0.00 0.00 2.66
265 267 8.552469 TTCGTTACGCACTATATAAGAAAGTC 57.448 34.615 0.00 0.00 0.00 3.01
266 268 7.923888 TCGTTACGCACTATATAAGAAAGTCT 58.076 34.615 0.00 0.00 0.00 3.24
267 269 8.400947 TCGTTACGCACTATATAAGAAAGTCTT 58.599 33.333 0.00 0.00 40.35 3.01
345 350 3.436359 GCCAAGAAAGAGAGAGAAGCTTG 59.564 47.826 2.10 0.00 0.00 4.01
350 355 3.767902 AAGAGAGAGAAGCTTGCTTGT 57.232 42.857 12.92 8.74 0.00 3.16
374 379 0.611062 TGCACGCTCCTGTACCTAGT 60.611 55.000 0.00 0.00 0.00 2.57
375 380 1.340308 TGCACGCTCCTGTACCTAGTA 60.340 52.381 0.00 0.00 0.00 1.82
376 381 1.334243 GCACGCTCCTGTACCTAGTAG 59.666 57.143 0.00 0.00 0.00 2.57
377 382 2.915349 CACGCTCCTGTACCTAGTAGA 58.085 52.381 0.00 0.00 0.00 2.59
378 383 2.613133 CACGCTCCTGTACCTAGTAGAC 59.387 54.545 0.00 0.00 0.00 2.59
379 384 2.238144 ACGCTCCTGTACCTAGTAGACA 59.762 50.000 0.00 0.00 0.00 3.41
380 385 3.117963 ACGCTCCTGTACCTAGTAGACAT 60.118 47.826 0.00 0.00 0.00 3.06
381 386 4.102210 ACGCTCCTGTACCTAGTAGACATA 59.898 45.833 0.00 0.00 0.00 2.29
421 426 2.416893 GACTTTCTGGCGAGACATTTCC 59.583 50.000 0.00 0.00 0.00 3.13
424 429 1.808411 TCTGGCGAGACATTTCCAAC 58.192 50.000 0.00 0.00 0.00 3.77
430 435 2.411547 GCGAGACATTTCCAACTTGTCG 60.412 50.000 0.00 0.00 43.49 4.35
445 450 2.435410 TCGTACTCCAGAGCGCGA 60.435 61.111 12.10 9.21 36.22 5.87
448 453 2.045242 TACTCCAGAGCGCGACCT 60.045 61.111 12.10 1.67 0.00 3.85
449 454 1.677966 TACTCCAGAGCGCGACCTT 60.678 57.895 12.10 0.00 0.00 3.50
472 477 1.743623 CCCTTGTTGCGCATCCGTA 60.744 57.895 12.75 0.00 36.67 4.02
473 478 1.423845 CCTTGTTGCGCATCCGTAC 59.576 57.895 12.75 6.56 36.67 3.67
474 479 1.058748 CTTGTTGCGCATCCGTACG 59.941 57.895 12.75 8.69 36.67 3.67
475 480 2.291508 CTTGTTGCGCATCCGTACGG 62.292 60.000 28.66 28.66 36.67 4.02
476 481 4.218478 GTTGCGCATCCGTACGGC 62.218 66.667 29.64 17.33 36.67 5.68
584 639 0.321298 GCCGCCTCTGGTTAGAAACA 60.321 55.000 0.00 0.00 31.21 2.83
626 681 2.286294 CCAGCATTGTCTTAGCTAAGCG 59.714 50.000 25.83 13.38 36.73 4.68
647 702 2.075489 CAGATATCGACGCGGCGAC 61.075 63.158 42.41 27.66 43.79 5.19
721 780 3.179339 TTCCTGAACCCGCCCCAA 61.179 61.111 0.00 0.00 0.00 4.12
722 781 2.543797 TTCCTGAACCCGCCCCAAT 61.544 57.895 0.00 0.00 0.00 3.16
723 782 1.208844 TTCCTGAACCCGCCCCAATA 61.209 55.000 0.00 0.00 0.00 1.90
724 783 1.453197 CCTGAACCCGCCCCAATAC 60.453 63.158 0.00 0.00 0.00 1.89
725 784 1.817941 CTGAACCCGCCCCAATACG 60.818 63.158 0.00 0.00 0.00 3.06
727 786 4.807631 AACCCGCCCCAATACGCC 62.808 66.667 0.00 0.00 0.00 5.68
765 835 3.774528 TCGCAGCCGCTCCTGAAT 61.775 61.111 4.84 0.00 34.77 2.57
871 941 2.023414 TATCTGCGCGTGGGGTTAGG 62.023 60.000 8.43 0.00 0.00 2.69
951 1021 0.553333 CCCCAAATCCCCTTCCTCTC 59.447 60.000 0.00 0.00 0.00 3.20
1035 1115 2.579201 CCCAACACGAGCGAGGAT 59.421 61.111 0.00 0.00 0.00 3.24
1410 1493 0.394899 GCAAGATCTTCCTGGTGGGG 60.395 60.000 4.57 0.00 35.33 4.96
1457 1540 3.676172 TCTTGTCTTGTTTATACGGTGCG 59.324 43.478 0.00 0.00 0.00 5.34
1510 1593 3.675698 GCGCTAGATAAGGTTGTATCTGC 59.324 47.826 0.00 6.02 40.35 4.26
1670 1753 4.141135 TGAGGTTGGACCAGGTTTTGAATA 60.141 41.667 0.00 0.00 41.95 1.75
1673 1756 4.149598 GTTGGACCAGGTTTTGAATACCT 58.850 43.478 1.22 1.22 46.87 3.08
1710 1793 0.108615 CGGGCCAGAGTAGTTGACAG 60.109 60.000 4.39 0.00 0.00 3.51
1804 1887 1.450025 GGTGAGCCTAGGAAAAACCG 58.550 55.000 14.75 0.00 44.74 4.44
1903 1986 5.810095 AGACTAGTAGTAACCCGTGTAACT 58.190 41.667 1.88 0.00 31.75 2.24
1939 2022 6.870965 ACAAGAGTAAAAGATAGCTGTGACTG 59.129 38.462 0.00 0.00 0.00 3.51
2135 2225 8.244802 AGTCGTATCTATATGTCAGTTATTGGC 58.755 37.037 0.00 0.00 0.00 4.52
2137 2227 7.027760 CGTATCTATATGTCAGTTATTGGCGT 58.972 38.462 0.00 0.00 32.72 5.68
2142 2232 1.876799 TGTCAGTTATTGGCGTTGGTG 59.123 47.619 0.00 0.00 32.72 4.17
2179 2269 1.971357 CCTCCTGATACCAGCCGTTAT 59.029 52.381 0.00 0.00 39.07 1.89
2277 2367 7.764443 ACTTATATGTAACTAGCATAATGCCCG 59.236 37.037 0.00 0.00 46.52 6.13
2328 2418 1.194781 GCACAGAGACTGGGGAGGAA 61.195 60.000 3.22 0.00 35.08 3.36
2329 2419 1.577736 CACAGAGACTGGGGAGGAAT 58.422 55.000 0.00 0.00 35.51 3.01
2403 2494 1.361668 CGGATTGACTGGCTGGTTCG 61.362 60.000 0.00 0.00 0.00 3.95
2410 2501 1.287815 CTGGCTGGTTCGTGTCGTA 59.712 57.895 0.00 0.00 0.00 3.43
2417 2508 3.185797 GCTGGTTCGTGTCGTAGAAAAAT 59.814 43.478 0.00 0.00 39.69 1.82
2425 2516 7.196282 TCGTGTCGTAGAAAAATATTACGTG 57.804 36.000 0.00 0.00 39.69 4.49
2431 2522 6.021232 TCGTAGAAAAATATTACGTGCTGTCG 60.021 38.462 0.00 0.00 40.58 4.35
2490 2582 2.983592 GGGTGGCTTGTTGGACCG 60.984 66.667 0.00 0.00 0.00 4.79
2535 2627 2.444388 TGGATCAGGAAGATTGGGATGG 59.556 50.000 0.00 0.00 37.00 3.51
2541 2633 1.846439 GGAAGATTGGGATGGAGTGGA 59.154 52.381 0.00 0.00 0.00 4.02
2688 2787 5.127031 AGTTTAGCATCACCAGTTTTTGTGT 59.873 36.000 0.00 0.00 34.14 3.72
2689 2788 5.590530 TTAGCATCACCAGTTTTTGTGTT 57.409 34.783 0.00 0.00 34.14 3.32
2699 2798 4.994217 CCAGTTTTTGTGTTTCAACCTGTT 59.006 37.500 0.00 0.00 35.61 3.16
2702 2801 3.601443 TTTGTGTTTCAACCTGTTGGG 57.399 42.857 9.94 0.00 40.78 4.12
2721 2820 9.157104 CTGTTGGGTACTTTAATTTGTTTTGTT 57.843 29.630 0.00 0.00 0.00 2.83
2825 3354 2.679092 CTGCATCTTGGGCCAGGA 59.321 61.111 21.53 21.53 0.00 3.86
2837 3366 1.411651 GGCCAGGACCCAGGACTATC 61.412 65.000 0.00 0.00 0.00 2.08
2850 3387 5.839063 CCCAGGACTATCACTATGGTTTCTA 59.161 44.000 0.00 0.00 0.00 2.10
2866 3403 0.107508 TCTATGTTGCTCAGCCCTGC 60.108 55.000 0.00 0.00 0.00 4.85
2911 3448 1.668294 CACTGGAGCTGGACGACTT 59.332 57.895 0.00 0.00 0.00 3.01
2987 3524 7.766219 TTGTCGATTAGTTAGTTATGGAAGC 57.234 36.000 0.00 0.00 0.00 3.86
3003 3540 8.624776 GTTATGGAAGCTTAATATCTGCAAACT 58.375 33.333 0.00 0.00 0.00 2.66
3034 3574 2.124695 GCGAGGGTGGGAATGACC 60.125 66.667 0.00 0.00 38.08 4.02
3059 3599 1.826720 GGCATGGGTTGATCATGTTGT 59.173 47.619 0.00 0.00 42.72 3.32
3153 3693 0.244450 AAATGTGCCCTGCGATGTTG 59.756 50.000 0.00 0.00 0.00 3.33
3185 3725 4.644498 CATGTATGGATGTAGACATGGCA 58.356 43.478 0.00 0.00 43.17 4.92
3187 3727 2.945080 ATGGATGTAGACATGGCAGG 57.055 50.000 0.00 0.00 36.57 4.85
3216 3756 6.136857 AGGATGGAGTACTATTGCTAGTTGA 58.863 40.000 0.00 0.00 39.04 3.18
3217 3757 6.266558 AGGATGGAGTACTATTGCTAGTTGAG 59.733 42.308 0.00 0.00 39.04 3.02
3218 3758 6.041069 GGATGGAGTACTATTGCTAGTTGAGT 59.959 42.308 0.00 0.00 39.04 3.41
3219 3759 6.852420 TGGAGTACTATTGCTAGTTGAGTT 57.148 37.500 0.00 0.00 39.04 3.01
3220 3760 7.241042 TGGAGTACTATTGCTAGTTGAGTTT 57.759 36.000 0.00 0.00 39.04 2.66
3221 3761 7.097192 TGGAGTACTATTGCTAGTTGAGTTTG 58.903 38.462 0.00 0.00 39.04 2.93
3222 3762 7.097834 GGAGTACTATTGCTAGTTGAGTTTGT 58.902 38.462 0.00 0.00 39.04 2.83
3223 3763 8.248945 GGAGTACTATTGCTAGTTGAGTTTGTA 58.751 37.037 0.00 0.00 39.04 2.41
3224 3764 9.291664 GAGTACTATTGCTAGTTGAGTTTGTAG 57.708 37.037 0.00 0.00 39.04 2.74
3225 3765 8.804204 AGTACTATTGCTAGTTGAGTTTGTAGT 58.196 33.333 0.00 0.00 39.04 2.73
3226 3766 9.420551 GTACTATTGCTAGTTGAGTTTGTAGTT 57.579 33.333 0.00 0.00 39.04 2.24
3227 3767 8.311650 ACTATTGCTAGTTGAGTTTGTAGTTG 57.688 34.615 0.00 0.00 34.42 3.16
3228 3768 5.418310 TTGCTAGTTGAGTTTGTAGTTGC 57.582 39.130 0.00 0.00 0.00 4.17
3229 3769 4.703897 TGCTAGTTGAGTTTGTAGTTGCT 58.296 39.130 0.00 0.00 0.00 3.91
3230 3770 5.849510 TGCTAGTTGAGTTTGTAGTTGCTA 58.150 37.500 0.00 0.00 0.00 3.49
3231 3771 5.926542 TGCTAGTTGAGTTTGTAGTTGCTAG 59.073 40.000 0.00 0.00 0.00 3.42
3232 3772 5.163943 GCTAGTTGAGTTTGTAGTTGCTAGC 60.164 44.000 8.10 8.10 40.96 3.42
3233 3773 4.962155 AGTTGAGTTTGTAGTTGCTAGCT 58.038 39.130 17.23 0.00 0.00 3.32
3234 3774 4.752101 AGTTGAGTTTGTAGTTGCTAGCTG 59.248 41.667 17.23 0.00 0.00 4.24
3239 3779 0.888619 TGTAGTTGCTAGCTGCTCGT 59.111 50.000 17.23 0.00 43.37 4.18
3271 3811 8.237267 GGAATACCTGATAACTCAAAGTTGTTG 58.763 37.037 2.65 0.00 39.11 3.33
3277 3817 5.298276 TGATAACTCAAAGTTGTTGACCACC 59.702 40.000 2.65 0.00 39.11 4.61
3316 3856 1.177256 AGCTTACGTCTGTGGTCCGT 61.177 55.000 0.00 0.00 38.53 4.69
3400 3940 4.583073 TGCAAATTATCATCAGCTGCATCT 59.417 37.500 9.47 0.00 33.65 2.90
3427 3967 3.515630 CTGCACTACTGTGATAGGTGTG 58.484 50.000 0.00 0.00 46.55 3.82
3430 3970 3.056821 GCACTACTGTGATAGGTGTGTCA 60.057 47.826 0.00 0.00 46.55 3.58
3443 3983 2.959707 GGTGTGTCAGGAGGGTATAGAG 59.040 54.545 0.00 0.00 0.00 2.43
3444 3984 2.362717 GTGTGTCAGGAGGGTATAGAGC 59.637 54.545 0.00 0.00 0.00 4.09
3463 4005 2.170187 AGCTAGTTTCTGGAGCTCCATG 59.830 50.000 35.11 26.46 42.97 3.66
3469 4011 4.225942 AGTTTCTGGAGCTCCATGTTGATA 59.774 41.667 35.11 20.05 46.46 2.15
3544 4906 8.208903 ACTGTTGGTACACTTGTAAGAATAAGT 58.791 33.333 0.00 0.00 39.29 2.24
3561 4923 2.469274 AGTGAGAAGATGCACTGGTG 57.531 50.000 0.00 0.00 43.26 4.17
3601 4963 3.952931 AGCAATGAGATTGAGTCTGCTT 58.047 40.909 0.40 0.00 42.83 3.91
3626 4988 1.244816 GGGTCAAAGCCAGGTTACAC 58.755 55.000 0.00 0.00 35.40 2.90
3641 5003 3.891400 CACGGGGATGCCATTGCG 61.891 66.667 5.30 1.33 41.78 4.85
3646 5008 2.517875 GGATGCCATTGCGCTCCT 60.518 61.111 9.73 0.00 41.78 3.69
3652 5014 1.510480 GCCATTGCGCTCCTATCACC 61.510 60.000 9.73 0.00 0.00 4.02
3726 5091 4.324099 CCAGAGGGATCTGAATCACACTTT 60.324 45.833 6.83 0.00 37.82 2.66
3727 5092 5.104776 CCAGAGGGATCTGAATCACACTTTA 60.105 44.000 6.83 0.00 37.82 1.85
3728 5093 6.409704 CAGAGGGATCTGAATCACACTTTAA 58.590 40.000 0.00 0.00 37.82 1.52
3780 5145 3.803162 GGAAGGAGAGCCAGGGCC 61.803 72.222 6.70 0.00 43.17 5.80
3796 5162 1.549950 GGGCCCAAGATCAGGTGAAAA 60.550 52.381 19.95 0.00 0.00 2.29
3852 5218 5.514279 GCTGCTAAGCCAATATAAGTGTTG 58.486 41.667 0.00 0.00 44.22 3.33
3901 5267 7.707624 ATATTTGGAGTCATGTTTGTGATGT 57.292 32.000 0.00 0.00 0.00 3.06
3920 5286 8.842280 TGTGATGTAGTTTTACAGGGTAAAAAG 58.158 33.333 13.94 0.00 42.72 2.27
3965 5461 3.084039 TGATGGTCAATCAAGCACTTCC 58.916 45.455 0.00 0.00 42.49 3.46
4012 5508 3.611766 AAAAGTAGCGAGGCTGTGTAT 57.388 42.857 0.00 0.00 40.10 2.29
4037 5533 9.866655 ATTTGAGTGGGCTAATATTTCTTGATA 57.133 29.630 0.00 0.00 0.00 2.15
4056 5552 5.785243 TGATACGTGTACCTTGATGAACAA 58.215 37.500 0.00 0.00 36.97 2.83
4058 5554 7.548967 TGATACGTGTACCTTGATGAACAATA 58.451 34.615 0.00 0.00 37.88 1.90
4059 5555 8.035984 TGATACGTGTACCTTGATGAACAATAA 58.964 33.333 0.00 0.00 37.88 1.40
4060 5556 8.780846 ATACGTGTACCTTGATGAACAATAAA 57.219 30.769 0.00 0.00 37.88 1.40
4061 5557 7.499321 ACGTGTACCTTGATGAACAATAAAA 57.501 32.000 0.00 0.00 37.88 1.52
4062 5558 8.106247 ACGTGTACCTTGATGAACAATAAAAT 57.894 30.769 0.00 0.00 37.88 1.82
4063 5559 9.221933 ACGTGTACCTTGATGAACAATAAAATA 57.778 29.630 0.00 0.00 37.88 1.40
4064 5560 9.485591 CGTGTACCTTGATGAACAATAAAATAC 57.514 33.333 0.00 0.00 37.88 1.89
4095 5591 9.546428 AGTCAATAAAATATGTGATGACGATGA 57.454 29.630 0.00 0.00 40.33 2.92
4096 5592 9.586150 GTCAATAAAATATGTGATGACGATGAC 57.414 33.333 0.00 0.00 0.00 3.06
4097 5593 9.323985 TCAATAAAATATGTGATGACGATGACA 57.676 29.630 0.00 0.00 29.61 3.58
4098 5594 9.934190 CAATAAAATATGTGATGACGATGACAA 57.066 29.630 0.00 0.00 28.79 3.18
4102 5598 9.546428 AAAATATGTGATGACGATGACAATAGA 57.454 29.630 0.00 0.00 28.79 1.98
4103 5599 8.754230 AATATGTGATGACGATGACAATAGAG 57.246 34.615 0.00 0.00 28.79 2.43
4104 5600 5.582689 TGTGATGACGATGACAATAGAGT 57.417 39.130 0.00 0.00 0.00 3.24
4105 5601 5.343249 TGTGATGACGATGACAATAGAGTG 58.657 41.667 0.00 0.00 0.00 3.51
4106 5602 5.105756 TGTGATGACGATGACAATAGAGTGT 60.106 40.000 0.00 0.00 0.00 3.55
4107 5603 6.094881 TGTGATGACGATGACAATAGAGTGTA 59.905 38.462 0.00 0.00 0.00 2.90
4108 5604 7.142021 GTGATGACGATGACAATAGAGTGTAT 58.858 38.462 0.00 0.00 0.00 2.29
4109 5605 7.324856 GTGATGACGATGACAATAGAGTGTATC 59.675 40.741 0.00 0.00 0.00 2.24
4110 5606 6.944234 TGACGATGACAATAGAGTGTATCT 57.056 37.500 0.00 0.00 42.47 1.98
4111 5607 6.729187 TGACGATGACAATAGAGTGTATCTG 58.271 40.000 0.00 0.00 39.20 2.90
4112 5608 6.078202 ACGATGACAATAGAGTGTATCTGG 57.922 41.667 0.00 0.00 39.20 3.86
4113 5609 5.828328 ACGATGACAATAGAGTGTATCTGGA 59.172 40.000 0.00 0.00 39.20 3.86
4114 5610 6.491745 ACGATGACAATAGAGTGTATCTGGAT 59.508 38.462 0.00 0.00 39.20 3.41
4115 5611 6.805760 CGATGACAATAGAGTGTATCTGGATG 59.194 42.308 0.00 0.00 39.20 3.51
4116 5612 7.308830 CGATGACAATAGAGTGTATCTGGATGA 60.309 40.741 0.00 0.00 39.20 2.92
4117 5613 7.282332 TGACAATAGAGTGTATCTGGATGAG 57.718 40.000 0.00 0.00 39.20 2.90
4118 5614 6.266330 TGACAATAGAGTGTATCTGGATGAGG 59.734 42.308 0.00 0.00 39.20 3.86
4119 5615 6.139671 ACAATAGAGTGTATCTGGATGAGGT 58.860 40.000 0.00 0.00 39.20 3.85
4120 5616 6.266558 ACAATAGAGTGTATCTGGATGAGGTC 59.733 42.308 0.00 0.00 39.20 3.85
4131 5627 3.703001 GGATGAGGTCCTCTTTGTTGA 57.297 47.619 19.82 0.00 44.16 3.18
4132 5628 3.604582 GGATGAGGTCCTCTTTGTTGAG 58.395 50.000 19.82 0.00 44.16 3.02
4139 5635 0.588252 CCTCTTTGTTGAGGTGTGCG 59.412 55.000 2.62 0.00 46.33 5.34
4140 5636 1.299541 CTCTTTGTTGAGGTGTGCGT 58.700 50.000 0.00 0.00 0.00 5.24
4141 5637 1.003545 CTCTTTGTTGAGGTGTGCGTG 60.004 52.381 0.00 0.00 0.00 5.34
4142 5638 0.029300 CTTTGTTGAGGTGTGCGTGG 59.971 55.000 0.00 0.00 0.00 4.94
4143 5639 1.380403 TTTGTTGAGGTGTGCGTGGG 61.380 55.000 0.00 0.00 0.00 4.61
4144 5640 2.203153 GTTGAGGTGTGCGTGGGT 60.203 61.111 0.00 0.00 0.00 4.51
4145 5641 1.822186 GTTGAGGTGTGCGTGGGTT 60.822 57.895 0.00 0.00 0.00 4.11
4146 5642 0.533308 GTTGAGGTGTGCGTGGGTTA 60.533 55.000 0.00 0.00 0.00 2.85
4147 5643 0.398696 TTGAGGTGTGCGTGGGTTAT 59.601 50.000 0.00 0.00 0.00 1.89
4148 5644 0.036765 TGAGGTGTGCGTGGGTTATC 60.037 55.000 0.00 0.00 0.00 1.75
4149 5645 0.249398 GAGGTGTGCGTGGGTTATCT 59.751 55.000 0.00 0.00 0.00 1.98
4150 5646 0.690762 AGGTGTGCGTGGGTTATCTT 59.309 50.000 0.00 0.00 0.00 2.40
4151 5647 0.802494 GGTGTGCGTGGGTTATCTTG 59.198 55.000 0.00 0.00 0.00 3.02
4152 5648 1.519408 GTGTGCGTGGGTTATCTTGT 58.481 50.000 0.00 0.00 0.00 3.16
4153 5649 1.196808 GTGTGCGTGGGTTATCTTGTG 59.803 52.381 0.00 0.00 0.00 3.33
4154 5650 1.202710 TGTGCGTGGGTTATCTTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
4155 5651 1.196808 GTGCGTGGGTTATCTTGTGTG 59.803 52.381 0.00 0.00 0.00 3.82
4156 5652 1.202710 TGCGTGGGTTATCTTGTGTGT 60.203 47.619 0.00 0.00 0.00 3.72
4157 5653 1.196808 GCGTGGGTTATCTTGTGTGTG 59.803 52.381 0.00 0.00 0.00 3.82
4158 5654 1.196808 CGTGGGTTATCTTGTGTGTGC 59.803 52.381 0.00 0.00 0.00 4.57
4159 5655 1.539827 GTGGGTTATCTTGTGTGTGCC 59.460 52.381 0.00 0.00 0.00 5.01
4160 5656 0.802494 GGGTTATCTTGTGTGTGCCG 59.198 55.000 0.00 0.00 0.00 5.69
4161 5657 0.168128 GGTTATCTTGTGTGTGCCGC 59.832 55.000 0.00 0.00 0.00 6.53
4162 5658 1.156736 GTTATCTTGTGTGTGCCGCT 58.843 50.000 0.00 0.00 0.00 5.52
4163 5659 1.535462 GTTATCTTGTGTGTGCCGCTT 59.465 47.619 0.00 0.00 0.00 4.68
4164 5660 1.155889 TATCTTGTGTGTGCCGCTTG 58.844 50.000 0.00 0.00 0.00 4.01
4165 5661 1.518056 ATCTTGTGTGTGCCGCTTGG 61.518 55.000 0.00 0.00 0.00 3.61
4177 5673 2.051345 GCTTGGCGGTTTGTGACG 60.051 61.111 0.00 0.00 0.00 4.35
4178 5674 2.637025 CTTGGCGGTTTGTGACGG 59.363 61.111 0.00 0.00 0.00 4.79
4179 5675 2.124653 TTGGCGGTTTGTGACGGT 60.125 55.556 0.00 0.00 0.00 4.83
4180 5676 1.720694 CTTGGCGGTTTGTGACGGTT 61.721 55.000 0.00 0.00 0.00 4.44
4181 5677 1.313812 TTGGCGGTTTGTGACGGTTT 61.314 50.000 0.00 0.00 0.00 3.27
4182 5678 1.313812 TGGCGGTTTGTGACGGTTTT 61.314 50.000 0.00 0.00 0.00 2.43
4183 5679 0.662085 GGCGGTTTGTGACGGTTTTA 59.338 50.000 0.00 0.00 0.00 1.52
4184 5680 1.334329 GGCGGTTTGTGACGGTTTTAG 60.334 52.381 0.00 0.00 0.00 1.85
4185 5681 1.922880 GCGGTTTGTGACGGTTTTAGC 60.923 52.381 0.00 0.00 0.00 3.09
4186 5682 1.600485 CGGTTTGTGACGGTTTTAGCT 59.400 47.619 0.00 0.00 0.00 3.32
4187 5683 2.349155 CGGTTTGTGACGGTTTTAGCTC 60.349 50.000 0.00 0.00 0.00 4.09
4188 5684 2.349155 GGTTTGTGACGGTTTTAGCTCG 60.349 50.000 0.00 0.00 0.00 5.03
4189 5685 2.512485 TTGTGACGGTTTTAGCTCGA 57.488 45.000 0.00 0.00 0.00 4.04
4190 5686 2.736144 TGTGACGGTTTTAGCTCGAT 57.264 45.000 0.00 0.00 0.00 3.59
4191 5687 3.034721 TGTGACGGTTTTAGCTCGATT 57.965 42.857 0.00 0.00 0.00 3.34
4192 5688 3.395639 TGTGACGGTTTTAGCTCGATTT 58.604 40.909 0.00 0.00 0.00 2.17
4193 5689 3.810941 TGTGACGGTTTTAGCTCGATTTT 59.189 39.130 0.00 0.00 0.00 1.82
4194 5690 4.084223 TGTGACGGTTTTAGCTCGATTTTC 60.084 41.667 0.00 0.00 0.00 2.29
4195 5691 3.434299 TGACGGTTTTAGCTCGATTTTCC 59.566 43.478 0.00 0.00 0.00 3.13
4196 5692 2.414138 ACGGTTTTAGCTCGATTTTCCG 59.586 45.455 0.00 0.00 40.94 4.30
4197 5693 2.414138 CGGTTTTAGCTCGATTTTCCGT 59.586 45.455 0.00 0.00 0.00 4.69
4198 5694 3.120442 CGGTTTTAGCTCGATTTTCCGTT 60.120 43.478 0.00 0.00 0.00 4.44
4199 5695 4.091800 CGGTTTTAGCTCGATTTTCCGTTA 59.908 41.667 0.00 0.00 0.00 3.18
4200 5696 5.389725 CGGTTTTAGCTCGATTTTCCGTTAA 60.390 40.000 0.00 0.00 0.00 2.01
4201 5697 6.549061 GGTTTTAGCTCGATTTTCCGTTAAT 58.451 36.000 0.00 0.00 0.00 1.40
4202 5698 7.025365 GGTTTTAGCTCGATTTTCCGTTAATT 58.975 34.615 0.00 0.00 0.00 1.40
4203 5699 8.177013 GGTTTTAGCTCGATTTTCCGTTAATTA 58.823 33.333 0.00 0.00 0.00 1.40
4204 5700 9.545611 GTTTTAGCTCGATTTTCCGTTAATTAA 57.454 29.630 0.00 0.00 0.00 1.40
4205 5701 9.545611 TTTTAGCTCGATTTTCCGTTAATTAAC 57.454 29.630 16.87 16.87 0.00 2.01
4206 5702 6.115450 AGCTCGATTTTCCGTTAATTAACC 57.885 37.500 20.08 5.79 32.69 2.85
4207 5703 4.959757 GCTCGATTTTCCGTTAATTAACCG 59.040 41.667 20.08 14.72 32.69 4.44
4208 5704 5.220453 GCTCGATTTTCCGTTAATTAACCGA 60.220 40.000 20.08 18.29 32.69 4.69
4209 5705 6.335176 TCGATTTTCCGTTAATTAACCGAG 57.665 37.500 20.08 10.89 32.69 4.63
4210 5706 4.959757 CGATTTTCCGTTAATTAACCGAGC 59.040 41.667 20.08 10.12 32.69 5.03
4211 5707 5.446206 CGATTTTCCGTTAATTAACCGAGCA 60.446 40.000 20.08 10.94 32.69 4.26
4212 5708 5.686159 TTTTCCGTTAATTAACCGAGCAA 57.314 34.783 20.08 13.16 32.69 3.91
4213 5709 4.666928 TTCCGTTAATTAACCGAGCAAC 57.333 40.909 20.08 0.00 32.69 4.17
4214 5710 3.929094 TCCGTTAATTAACCGAGCAACT 58.071 40.909 20.08 0.00 32.69 3.16
4215 5711 3.928375 TCCGTTAATTAACCGAGCAACTC 59.072 43.478 20.08 0.00 32.69 3.01
4216 5712 3.930848 CCGTTAATTAACCGAGCAACTCT 59.069 43.478 20.08 0.00 32.69 3.24
4217 5713 4.032558 CCGTTAATTAACCGAGCAACTCTC 59.967 45.833 20.08 0.00 38.47 3.20
4218 5714 4.863131 CGTTAATTAACCGAGCAACTCTCT 59.137 41.667 20.08 0.00 39.70 3.10
4219 5715 5.347907 CGTTAATTAACCGAGCAACTCTCTT 59.652 40.000 20.08 0.00 39.70 2.85
4220 5716 6.453922 CGTTAATTAACCGAGCAACTCTCTTC 60.454 42.308 20.08 0.00 39.70 2.87
4221 5717 4.810191 ATTAACCGAGCAACTCTCTTCT 57.190 40.909 0.00 0.00 39.70 2.85
4222 5718 2.447244 AACCGAGCAACTCTCTTCTG 57.553 50.000 0.00 0.00 39.70 3.02
4223 5719 0.037790 ACCGAGCAACTCTCTTCTGC 60.038 55.000 0.00 0.00 39.70 4.26
4225 5721 1.337635 CCGAGCAACTCTCTTCTGCTT 60.338 52.381 0.00 0.00 46.19 3.91
4226 5722 2.094494 CCGAGCAACTCTCTTCTGCTTA 60.094 50.000 0.00 0.00 46.19 3.09
4227 5723 3.579709 CGAGCAACTCTCTTCTGCTTAA 58.420 45.455 0.00 0.00 46.19 1.85
4228 5724 4.180057 CGAGCAACTCTCTTCTGCTTAAT 58.820 43.478 0.00 0.00 46.19 1.40
4229 5725 4.629200 CGAGCAACTCTCTTCTGCTTAATT 59.371 41.667 0.00 0.00 46.19 1.40
4230 5726 5.807520 CGAGCAACTCTCTTCTGCTTAATTA 59.192 40.000 0.00 0.00 46.19 1.40
4231 5727 6.311445 CGAGCAACTCTCTTCTGCTTAATTAA 59.689 38.462 0.00 0.00 46.19 1.40
4232 5728 7.010923 CGAGCAACTCTCTTCTGCTTAATTAAT 59.989 37.037 0.00 0.00 46.19 1.40
4233 5729 9.319143 GAGCAACTCTCTTCTGCTTAATTAATA 57.681 33.333 0.00 0.00 46.19 0.98
4234 5730 9.323985 AGCAACTCTCTTCTGCTTAATTAATAG 57.676 33.333 0.00 1.34 43.83 1.73
4235 5731 9.319143 GCAACTCTCTTCTGCTTAATTAATAGA 57.681 33.333 0.00 3.64 33.20 1.98
4241 5737 8.839310 TCTTCTGCTTAATTAATAGATGAGGC 57.161 34.615 16.19 8.49 0.00 4.70
4242 5738 8.432013 TCTTCTGCTTAATTAATAGATGAGGCA 58.568 33.333 16.19 11.39 0.00 4.75
4243 5739 8.978874 TTCTGCTTAATTAATAGATGAGGCAA 57.021 30.769 11.09 0.79 0.00 4.52
4244 5740 8.978874 TCTGCTTAATTAATAGATGAGGCAAA 57.021 30.769 0.00 0.00 0.00 3.68
4245 5741 9.407380 TCTGCTTAATTAATAGATGAGGCAAAA 57.593 29.630 0.00 0.00 0.00 2.44
4246 5742 9.455847 CTGCTTAATTAATAGATGAGGCAAAAC 57.544 33.333 0.00 0.00 0.00 2.43
4247 5743 9.189156 TGCTTAATTAATAGATGAGGCAAAACT 57.811 29.630 0.00 0.00 0.00 2.66
4252 5748 8.707938 ATTAATAGATGAGGCAAAACTTTTGC 57.292 30.769 25.11 25.11 44.22 3.68
4258 5754 3.659850 GCAAAACTTTTGCCTCCGT 57.340 47.368 23.40 0.00 39.38 4.69
4259 5755 1.934589 GCAAAACTTTTGCCTCCGTT 58.065 45.000 23.40 0.00 39.38 4.44
4260 5756 2.276201 GCAAAACTTTTGCCTCCGTTT 58.724 42.857 23.40 0.00 39.38 3.60
4261 5757 2.284150 GCAAAACTTTTGCCTCCGTTTC 59.716 45.455 23.40 0.00 39.38 2.78
4262 5758 2.485266 AAACTTTTGCCTCCGTTTCG 57.515 45.000 0.00 0.00 0.00 3.46
4263 5759 1.670791 AACTTTTGCCTCCGTTTCGA 58.329 45.000 0.00 0.00 0.00 3.71
4264 5760 1.670791 ACTTTTGCCTCCGTTTCGAA 58.329 45.000 0.00 0.00 0.00 3.71
4265 5761 2.018515 ACTTTTGCCTCCGTTTCGAAA 58.981 42.857 6.47 6.47 0.00 3.46
4266 5762 2.424246 ACTTTTGCCTCCGTTTCGAAAA 59.576 40.909 13.10 0.00 0.00 2.29
4267 5763 3.119424 ACTTTTGCCTCCGTTTCGAAAAA 60.119 39.130 13.10 0.00 0.00 1.94
4330 5826 9.757227 TTGCTGTATAAATTTGCAACTACTTTT 57.243 25.926 0.00 0.00 38.49 2.27
4544 6040 5.007034 TGAGTTTCTTTGTCAGTGAAACCA 58.993 37.500 19.91 16.37 46.07 3.67
4574 6071 9.558648 AGATTTTTGCTTTGATTTGTTTTGTTC 57.441 25.926 0.00 0.00 0.00 3.18
4578 6075 3.303066 GCTTTGATTTGTTTTGTTCGGCC 60.303 43.478 0.00 0.00 0.00 6.13
4580 6077 3.090952 TGATTTGTTTTGTTCGGCCTG 57.909 42.857 0.00 0.00 0.00 4.85
4590 6087 1.079503 GTTCGGCCTGTCTTGCTTAG 58.920 55.000 0.00 0.00 0.00 2.18
4609 6106 2.094675 AGCTGCAACTGAAACACTTGT 58.905 42.857 1.02 0.00 0.00 3.16
4664 6161 9.257651 CTCAATTCAAAAGAGCAAAAGAAAGAT 57.742 29.630 0.00 0.00 0.00 2.40
4738 6235 5.953183 TCAAGCACCAATGATAATGTTGAC 58.047 37.500 0.00 0.00 0.00 3.18
4745 6242 5.595542 ACCAATGATAATGTTGACCCAGATG 59.404 40.000 0.00 0.00 0.00 2.90
4977 6474 1.276421 CTTGACATCTCCCGTTGTCCT 59.724 52.381 0.00 0.00 41.22 3.85
5060 6557 1.831736 GCCAGGTCTCTGCCTAACTTA 59.168 52.381 0.00 0.00 39.61 2.24
5061 6558 2.159028 GCCAGGTCTCTGCCTAACTTAG 60.159 54.545 0.00 0.00 39.61 2.18
5064 6561 4.020128 CCAGGTCTCTGCCTAACTTAGTTT 60.020 45.833 1.94 0.00 39.61 2.66
5065 6562 5.513267 CCAGGTCTCTGCCTAACTTAGTTTT 60.513 44.000 1.94 0.00 39.61 2.43
5066 6563 5.409826 CAGGTCTCTGCCTAACTTAGTTTTG 59.590 44.000 1.94 0.00 37.04 2.44
5091 6588 9.362151 TGTTTTGTTTCCTATCAATCTTTAGGT 57.638 29.630 0.00 0.00 37.00 3.08
5188 6685 4.284550 GGTTGGAGGCAGGGCACA 62.285 66.667 0.00 0.00 0.00 4.57
6063 7560 2.840038 TCTGGTGCATCTCTGTAATGGT 59.160 45.455 0.00 0.00 0.00 3.55
6111 7608 2.270205 CAGGAGCAGGGCATCGTT 59.730 61.111 0.00 0.00 0.00 3.85
6156 7653 2.843545 GGCACAGACAGGGGGAAA 59.156 61.111 0.00 0.00 0.00 3.13
6159 7656 0.895559 GCACAGACAGGGGGAAAAGG 60.896 60.000 0.00 0.00 0.00 3.11
6225 7722 2.286732 AGCCAAGCCCAGGGAGAT 60.287 61.111 10.89 0.00 0.00 2.75
6438 7935 3.715854 CAATTCTTGCTCTGCAGGC 57.284 52.632 15.13 16.41 40.61 4.85
6621 8127 1.192428 TCCTCGAGTTTTAGGGAGGC 58.808 55.000 12.31 0.00 44.55 4.70
6629 8135 4.022589 CGAGTTTTAGGGAGGCATATCGTA 60.023 45.833 0.00 0.00 0.00 3.43
6756 8269 3.187432 GTGTTCAGCTAAGTTTCTGCTCC 59.813 47.826 0.00 0.00 34.51 4.70
6813 8326 5.712217 TGTTCTTGACGTGTAACTTGAAG 57.288 39.130 0.00 0.00 31.75 3.02
6827 8340 2.827921 ACTTGAAGGAAATCCATGTGGC 59.172 45.455 1.67 0.00 38.89 5.01
6829 8342 1.004161 TGAAGGAAATCCATGTGGCGA 59.996 47.619 1.67 0.00 38.89 5.54
6839 8352 1.600957 CCATGTGGCGATGTTCTGATC 59.399 52.381 0.00 0.00 0.00 2.92
6847 8364 3.002042 GGCGATGTTCTGATCAATCTGTG 59.998 47.826 0.00 0.00 0.00 3.66
6870 8387 4.433283 GCGCATGTTGTTGTCATGAAATTC 60.433 41.667 0.30 0.00 43.47 2.17
6873 8390 3.295785 TGTTGTTGTCATGAAATTCGCG 58.704 40.909 0.00 0.00 0.00 5.87
6893 8439 4.143179 CGCGGTAGATTTCTCGTTTCTTTT 60.143 41.667 0.00 0.00 0.00 2.27
6900 8446 5.763204 AGATTTCTCGTTTCTTTTGGCTGTA 59.237 36.000 0.00 0.00 0.00 2.74
7088 8646 3.131396 CCCAGACACACTTAACTGTCAC 58.869 50.000 0.00 0.00 39.49 3.67
7174 8733 2.265683 CTACGTACCTTTCCCTTTCGC 58.734 52.381 0.00 0.00 0.00 4.70
7200 8759 1.684734 GGGTAGGACTTGGGAGCGA 60.685 63.158 0.00 0.00 0.00 4.93
7201 8760 1.677637 GGGTAGGACTTGGGAGCGAG 61.678 65.000 0.00 0.00 0.00 5.03
7202 8761 1.677637 GGTAGGACTTGGGAGCGAGG 61.678 65.000 0.00 0.00 0.00 4.63
7203 8762 1.381327 TAGGACTTGGGAGCGAGGG 60.381 63.158 0.00 0.00 0.00 4.30
7218 8777 2.203714 GGGAGGGAGAGATCGGGG 60.204 72.222 0.00 0.00 0.00 5.73
7284 8847 1.608590 TGAGCTTGGTTTGCTGTTAGC 59.391 47.619 0.00 0.00 41.30 3.09
7285 8848 1.882623 GAGCTTGGTTTGCTGTTAGCT 59.117 47.619 0.00 0.00 42.97 3.32
7286 8849 3.074412 GAGCTTGGTTTGCTGTTAGCTA 58.926 45.455 2.24 0.00 42.97 3.32
7287 8850 3.077359 AGCTTGGTTTGCTGTTAGCTAG 58.923 45.455 2.24 0.00 42.97 3.42
7295 8858 1.402259 TGCTGTTAGCTAGACTCGAGC 59.598 52.381 13.61 5.49 42.97 5.03
7342 8905 1.588824 ATGCATGTGGTGGCACTTCG 61.589 55.000 18.45 3.34 43.75 3.79
7343 8906 2.981560 GCATGTGGTGGCACTTCGG 61.982 63.158 18.45 5.14 0.00 4.30
7344 8907 2.034066 ATGTGGTGGCACTTCGGG 59.966 61.111 18.45 0.00 0.00 5.14
7345 8908 2.525124 ATGTGGTGGCACTTCGGGA 61.525 57.895 18.45 0.00 0.00 5.14
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.093945 TGCCTAGAAAGACAAATATTTGGGAAC 60.094 37.037 27.43 16.80 42.34 3.62
1 2 6.951198 TGCCTAGAAAGACAAATATTTGGGAA 59.049 34.615 27.43 11.57 42.34 3.97
2 3 6.489603 TGCCTAGAAAGACAAATATTTGGGA 58.510 36.000 27.43 8.88 42.34 4.37
3 4 6.773976 TGCCTAGAAAGACAAATATTTGGG 57.226 37.500 27.43 18.18 42.34 4.12
4 5 9.305925 GAAATGCCTAGAAAGACAAATATTTGG 57.694 33.333 27.43 12.85 42.34 3.28
5 6 9.859427 TGAAATGCCTAGAAAGACAAATATTTG 57.141 29.630 23.60 23.60 43.62 2.32
9 10 9.859427 CATTTGAAATGCCTAGAAAGACAAATA 57.141 29.630 4.82 0.00 34.96 1.40
10 11 7.820872 CCATTTGAAATGCCTAGAAAGACAAAT 59.179 33.333 12.26 0.00 36.38 2.32
11 12 7.015098 TCCATTTGAAATGCCTAGAAAGACAAA 59.985 33.333 12.26 0.00 0.00 2.83
12 13 6.493115 TCCATTTGAAATGCCTAGAAAGACAA 59.507 34.615 12.26 0.00 0.00 3.18
13 14 6.009589 TCCATTTGAAATGCCTAGAAAGACA 58.990 36.000 12.26 0.00 0.00 3.41
14 15 6.071952 TGTCCATTTGAAATGCCTAGAAAGAC 60.072 38.462 12.26 11.27 0.00 3.01
15 16 6.009589 TGTCCATTTGAAATGCCTAGAAAGA 58.990 36.000 12.26 0.00 0.00 2.52
16 17 6.095377 GTGTCCATTTGAAATGCCTAGAAAG 58.905 40.000 12.26 0.00 0.00 2.62
17 18 5.538053 TGTGTCCATTTGAAATGCCTAGAAA 59.462 36.000 12.26 0.00 0.00 2.52
18 19 5.076182 TGTGTCCATTTGAAATGCCTAGAA 58.924 37.500 12.26 0.00 0.00 2.10
19 20 4.661222 TGTGTCCATTTGAAATGCCTAGA 58.339 39.130 12.26 1.83 0.00 2.43
20 21 5.389859 TTGTGTCCATTTGAAATGCCTAG 57.610 39.130 12.26 0.00 0.00 3.02
21 22 5.999205 ATTGTGTCCATTTGAAATGCCTA 57.001 34.783 12.26 0.00 0.00 3.93
22 23 4.895668 ATTGTGTCCATTTGAAATGCCT 57.104 36.364 12.26 0.00 0.00 4.75
23 24 6.417635 CGTATATTGTGTCCATTTGAAATGCC 59.582 38.462 12.26 5.75 0.00 4.40
24 25 6.417635 CCGTATATTGTGTCCATTTGAAATGC 59.582 38.462 12.26 0.87 0.00 3.56
25 26 7.702386 TCCGTATATTGTGTCCATTTGAAATG 58.298 34.615 10.84 10.84 0.00 2.32
26 27 7.873719 TCCGTATATTGTGTCCATTTGAAAT 57.126 32.000 0.00 0.00 0.00 2.17
27 28 7.338196 ACATCCGTATATTGTGTCCATTTGAAA 59.662 33.333 0.00 0.00 0.00 2.69
28 29 6.826231 ACATCCGTATATTGTGTCCATTTGAA 59.174 34.615 0.00 0.00 0.00 2.69
29 30 6.353323 ACATCCGTATATTGTGTCCATTTGA 58.647 36.000 0.00 0.00 0.00 2.69
30 31 6.618287 ACATCCGTATATTGTGTCCATTTG 57.382 37.500 0.00 0.00 0.00 2.32
31 32 7.936847 ACATACATCCGTATATTGTGTCCATTT 59.063 33.333 0.00 0.00 36.11 2.32
32 33 7.450074 ACATACATCCGTATATTGTGTCCATT 58.550 34.615 0.00 0.00 36.11 3.16
33 34 7.004555 ACATACATCCGTATATTGTGTCCAT 57.995 36.000 0.00 0.00 36.11 3.41
34 35 6.413783 ACATACATCCGTATATTGTGTCCA 57.586 37.500 0.00 0.00 36.11 4.02
35 36 7.754027 GTCTACATACATCCGTATATTGTGTCC 59.246 40.741 0.00 0.00 36.11 4.02
36 37 8.294577 TGTCTACATACATCCGTATATTGTGTC 58.705 37.037 0.00 0.00 36.11 3.67
37 38 8.173542 TGTCTACATACATCCGTATATTGTGT 57.826 34.615 0.00 0.00 36.11 3.72
92 93 7.545965 AGATTCCAACAAAGACTACATACGAAG 59.454 37.037 0.00 0.00 0.00 3.79
93 94 7.383687 AGATTCCAACAAAGACTACATACGAA 58.616 34.615 0.00 0.00 0.00 3.85
94 95 6.931838 AGATTCCAACAAAGACTACATACGA 58.068 36.000 0.00 0.00 0.00 3.43
95 96 7.036220 AGAGATTCCAACAAAGACTACATACG 58.964 38.462 0.00 0.00 0.00 3.06
96 97 9.522804 CTAGAGATTCCAACAAAGACTACATAC 57.477 37.037 0.00 0.00 0.00 2.39
97 98 9.475620 TCTAGAGATTCCAACAAAGACTACATA 57.524 33.333 0.00 0.00 0.00 2.29
98 99 8.367660 TCTAGAGATTCCAACAAAGACTACAT 57.632 34.615 0.00 0.00 0.00 2.29
99 100 7.776618 TCTAGAGATTCCAACAAAGACTACA 57.223 36.000 0.00 0.00 0.00 2.74
100 101 9.145865 CTTTCTAGAGATTCCAACAAAGACTAC 57.854 37.037 0.00 0.00 0.00 2.73
101 102 9.090103 TCTTTCTAGAGATTCCAACAAAGACTA 57.910 33.333 0.00 0.00 0.00 2.59
102 103 7.875554 GTCTTTCTAGAGATTCCAACAAAGACT 59.124 37.037 14.86 0.00 42.46 3.24
103 104 7.657761 TGTCTTTCTAGAGATTCCAACAAAGAC 59.342 37.037 15.11 15.11 44.46 3.01
104 105 7.735917 TGTCTTTCTAGAGATTCCAACAAAGA 58.264 34.615 0.00 0.00 0.00 2.52
105 106 7.969536 TGTCTTTCTAGAGATTCCAACAAAG 57.030 36.000 0.00 0.00 0.00 2.77
106 107 7.993183 AGTTGTCTTTCTAGAGATTCCAACAAA 59.007 33.333 18.36 0.00 36.01 2.83
107 108 7.509546 AGTTGTCTTTCTAGAGATTCCAACAA 58.490 34.615 18.36 10.55 36.01 2.83
108 109 7.067496 AGTTGTCTTTCTAGAGATTCCAACA 57.933 36.000 18.36 6.61 36.01 3.33
109 110 9.660180 AATAGTTGTCTTTCTAGAGATTCCAAC 57.340 33.333 12.62 12.62 34.81 3.77
111 112 9.658799 CAAATAGTTGTCTTTCTAGAGATTCCA 57.341 33.333 0.00 0.00 0.00 3.53
112 113 9.103861 CCAAATAGTTGTCTTTCTAGAGATTCC 57.896 37.037 1.80 0.00 32.40 3.01
113 114 9.877178 TCCAAATAGTTGTCTTTCTAGAGATTC 57.123 33.333 1.80 0.00 32.40 2.52
116 117 9.490379 GTTTCCAAATAGTTGTCTTTCTAGAGA 57.510 33.333 1.80 0.00 32.40 3.10
117 118 8.436200 CGTTTCCAAATAGTTGTCTTTCTAGAG 58.564 37.037 1.80 0.00 32.40 2.43
118 119 7.386848 CCGTTTCCAAATAGTTGTCTTTCTAGA 59.613 37.037 1.80 0.00 32.40 2.43
119 120 7.386848 TCCGTTTCCAAATAGTTGTCTTTCTAG 59.613 37.037 1.80 0.00 32.40 2.43
120 121 7.218614 TCCGTTTCCAAATAGTTGTCTTTCTA 58.781 34.615 1.80 0.00 32.40 2.10
121 122 6.059484 TCCGTTTCCAAATAGTTGTCTTTCT 58.941 36.000 1.80 0.00 32.40 2.52
122 123 6.308371 TCCGTTTCCAAATAGTTGTCTTTC 57.692 37.500 1.80 0.00 32.40 2.62
123 124 5.240844 CCTCCGTTTCCAAATAGTTGTCTTT 59.759 40.000 1.80 0.00 32.40 2.52
124 125 4.760204 CCTCCGTTTCCAAATAGTTGTCTT 59.240 41.667 1.80 0.00 32.40 3.01
125 126 4.324267 CCTCCGTTTCCAAATAGTTGTCT 58.676 43.478 1.80 0.00 32.40 3.41
126 127 3.439129 CCCTCCGTTTCCAAATAGTTGTC 59.561 47.826 1.80 0.00 32.40 3.18
127 128 3.073356 TCCCTCCGTTTCCAAATAGTTGT 59.927 43.478 1.80 0.00 32.40 3.32
128 129 3.681593 TCCCTCCGTTTCCAAATAGTTG 58.318 45.455 0.00 0.00 34.25 3.16
129 130 3.329814 ACTCCCTCCGTTTCCAAATAGTT 59.670 43.478 0.00 0.00 0.00 2.24
130 131 2.910977 ACTCCCTCCGTTTCCAAATAGT 59.089 45.455 0.00 0.00 0.00 2.12
131 132 3.629142 ACTCCCTCCGTTTCCAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
132 133 5.703730 AATACTCCCTCCGTTTCCAAATA 57.296 39.130 0.00 0.00 0.00 1.40
133 134 4.586306 AATACTCCCTCCGTTTCCAAAT 57.414 40.909 0.00 0.00 0.00 2.32
134 135 4.076394 CAAATACTCCCTCCGTTTCCAAA 58.924 43.478 0.00 0.00 0.00 3.28
135 136 3.681593 CAAATACTCCCTCCGTTTCCAA 58.318 45.455 0.00 0.00 0.00 3.53
136 137 2.617021 GCAAATACTCCCTCCGTTTCCA 60.617 50.000 0.00 0.00 0.00 3.53
137 138 2.014857 GCAAATACTCCCTCCGTTTCC 58.985 52.381 0.00 0.00 0.00 3.13
138 139 2.014857 GGCAAATACTCCCTCCGTTTC 58.985 52.381 0.00 0.00 0.00 2.78
139 140 1.340697 GGGCAAATACTCCCTCCGTTT 60.341 52.381 0.00 0.00 39.46 3.60
140 141 0.255033 GGGCAAATACTCCCTCCGTT 59.745 55.000 0.00 0.00 39.46 4.44
141 142 1.912971 GGGCAAATACTCCCTCCGT 59.087 57.895 0.00 0.00 39.46 4.69
142 143 4.878878 GGGCAAATACTCCCTCCG 57.121 61.111 0.00 0.00 39.46 4.63
146 147 1.035139 CATGCAGGGCAAATACTCCC 58.965 55.000 0.00 0.00 43.62 4.30
147 148 0.386838 GCATGCAGGGCAAATACTCC 59.613 55.000 14.21 0.00 43.62 3.85
148 149 1.105457 TGCATGCAGGGCAAATACTC 58.895 50.000 18.46 0.00 43.62 2.59
149 150 1.784358 ATGCATGCAGGGCAAATACT 58.216 45.000 26.69 1.43 45.60 2.12
150 151 2.607631 AATGCATGCAGGGCAAATAC 57.392 45.000 26.69 0.00 45.60 1.89
190 191 3.669536 TGGATCGTTGAAGCACATGTTA 58.330 40.909 0.00 0.00 0.00 2.41
247 249 7.470289 AAGCAAGACTTTCTTATATAGTGCG 57.530 36.000 0.00 0.00 33.78 5.34
285 290 8.275040 AGTGGGTGAGTAAATAATTAGCTTGAT 58.725 33.333 0.00 0.00 0.00 2.57
345 350 0.375106 GGAGCGTGCATCTTACAAGC 59.625 55.000 0.00 0.00 41.96 4.01
350 355 1.136305 GGTACAGGAGCGTGCATCTTA 59.864 52.381 0.00 0.00 0.00 2.10
421 426 2.329379 GCTCTGGAGTACGACAAGTTG 58.671 52.381 0.00 0.00 0.00 3.16
424 429 0.798771 GCGCTCTGGAGTACGACAAG 60.799 60.000 0.00 0.00 0.00 3.16
430 435 1.935327 AAGGTCGCGCTCTGGAGTAC 61.935 60.000 5.56 0.00 0.00 2.73
449 454 1.270041 GGATGCGCAACAAGGGAAAAA 60.270 47.619 17.11 0.00 0.00 1.94
463 468 1.807981 TTTGAGCCGTACGGATGCG 60.808 57.895 37.62 11.43 37.50 4.73
472 477 1.219522 CCGAAACTCGTTTGAGCCGT 61.220 55.000 0.00 0.00 46.69 5.68
473 478 0.942410 TCCGAAACTCGTTTGAGCCG 60.942 55.000 0.00 0.00 46.69 5.52
474 479 0.511653 GTCCGAAACTCGTTTGAGCC 59.488 55.000 0.00 0.00 46.69 4.70
475 480 0.161024 CGTCCGAAACTCGTTTGAGC 59.839 55.000 0.00 0.00 46.69 4.26
626 681 2.430921 CCGCGTCGATATCTGGCC 60.431 66.667 4.92 0.00 0.00 5.36
647 702 7.307101 CCAATCCAAACGGTTTCTTGTTTATTG 60.307 37.037 2.51 6.23 36.22 1.90
736 806 3.592814 CTGCGACCCGGCTCGATA 61.593 66.667 23.04 9.54 35.58 2.92
755 825 1.361668 CGTGGGTTCATTCAGGAGCG 61.362 60.000 0.00 0.00 0.00 5.03
801 871 1.011352 GCTCGGCTACGACTACGAC 60.011 63.158 0.00 0.00 45.59 4.34
802 872 2.176273 GGCTCGGCTACGACTACGA 61.176 63.158 0.00 0.00 45.59 3.43
803 873 2.327244 GGCTCGGCTACGACTACG 59.673 66.667 0.00 0.00 45.59 3.51
804 874 2.327244 CGGCTCGGCTACGACTAC 59.673 66.667 0.00 0.00 45.59 2.73
805 875 3.580193 GCGGCTCGGCTACGACTA 61.580 66.667 0.00 0.00 45.59 2.59
871 941 4.767255 CCGGTCCCAGCTGTCAGC 62.767 72.222 17.48 17.48 42.84 4.26
951 1021 1.875963 GGTGAAACTGGCGATGTGG 59.124 57.895 0.00 0.00 36.74 4.17
1410 1493 7.527084 AAACAATGAGCTATAGTCGAGAAAC 57.473 36.000 0.84 0.00 0.00 2.78
1457 1540 4.610945 CAAGAATATGGGCAATTTCGGAC 58.389 43.478 0.00 0.00 0.00 4.79
1510 1593 3.058224 AGGCGAAATTTTCTTGAACTCCG 60.058 43.478 7.50 0.00 0.00 4.63
1670 1753 1.895131 GCATTGATTTGACACCCAGGT 59.105 47.619 0.00 0.00 0.00 4.00
1673 1756 0.887247 CGGCATTGATTTGACACCCA 59.113 50.000 0.00 0.00 0.00 4.51
1710 1793 5.008613 TCAACACCACTAAAGAATGTCAAGC 59.991 40.000 0.00 0.00 0.00 4.01
1903 1986 6.530120 TCTTTTACTCTTGTACAATCCTGCA 58.470 36.000 9.13 0.00 0.00 4.41
1939 2022 8.933807 GGTGAATAACTAGTTCTTTTGGAGTAC 58.066 37.037 12.39 0.00 0.00 2.73
2142 2232 1.209747 GAGGGGGTATGAGGTGAACAC 59.790 57.143 0.00 0.00 0.00 3.32
2179 2269 4.299586 TCTCACCCATTTGCAACAGATA 57.700 40.909 0.00 0.00 0.00 1.98
2277 2367 0.039256 TTGGTACCGTAGCGACACAC 60.039 55.000 7.57 0.00 0.00 3.82
2300 2390 1.067283 CAGTCTCTGTGCTTCGTCCAT 60.067 52.381 0.00 0.00 0.00 3.41
2328 2418 0.038166 ACGCATTCTCCAACCACCAT 59.962 50.000 0.00 0.00 0.00 3.55
2329 2419 0.687920 TACGCATTCTCCAACCACCA 59.312 50.000 0.00 0.00 0.00 4.17
2403 2494 6.892951 CAGCACGTAATATTTTTCTACGACAC 59.107 38.462 13.19 3.97 40.61 3.67
2410 2501 5.407387 ACACGACAGCACGTAATATTTTTCT 59.593 36.000 0.00 0.00 44.76 2.52
2417 2508 4.424061 AAGTACACGACAGCACGTAATA 57.576 40.909 0.00 0.00 44.76 0.98
2425 2516 7.743400 GGAAAGTATTTAAAAGTACACGACAGC 59.257 37.037 0.00 0.00 39.27 4.40
2431 2522 8.301002 TGCATGGGAAAGTATTTAAAAGTACAC 58.699 33.333 0.00 0.00 39.27 2.90
2490 2582 2.362717 CAGAACCTACTCGATCCCTTCC 59.637 54.545 0.00 0.00 0.00 3.46
2535 2627 1.096416 CGAGTACACCCTCTCCACTC 58.904 60.000 0.00 0.00 33.78 3.51
2541 2633 3.450115 GCGGCGAGTACACCCTCT 61.450 66.667 12.98 0.00 0.00 3.69
2721 2820 3.173151 TCCTTCCAGTGAGTTGCTATGA 58.827 45.455 0.00 0.00 0.00 2.15
2825 3354 3.708236 ACCATAGTGATAGTCCTGGGT 57.292 47.619 0.00 0.00 0.00 4.51
2837 3366 5.220739 GCTGAGCAACATAGAAACCATAGTG 60.221 44.000 0.00 0.00 0.00 2.74
2850 3387 1.378250 GAGCAGGGCTGAGCAACAT 60.378 57.895 6.82 0.00 39.88 2.71
2911 3448 9.752228 ATGCTGATCAAAGTCTCTAGATATCTA 57.248 33.333 11.94 11.94 0.00 1.98
3035 3575 1.105167 ATGATCAACCCATGCCGCAG 61.105 55.000 0.00 0.00 0.00 5.18
3046 3586 7.332926 ACAGAATCTCAGTACAACATGATCAAC 59.667 37.037 0.00 0.00 0.00 3.18
3059 3599 7.988737 CAATAAATTGGCACAGAATCTCAGTA 58.011 34.615 0.00 0.00 42.39 2.74
3167 3707 2.639347 CCCTGCCATGTCTACATCCATA 59.361 50.000 0.00 0.00 33.61 2.74
3176 3716 2.196742 TCCTTATCCCTGCCATGTCT 57.803 50.000 0.00 0.00 0.00 3.41
3185 3725 5.485708 GCAATAGTACTCCATCCTTATCCCT 59.514 44.000 0.00 0.00 0.00 4.20
3187 3727 6.613153 AGCAATAGTACTCCATCCTTATCC 57.387 41.667 0.00 0.00 0.00 2.59
3227 3767 1.135083 TCCTTGTAACGAGCAGCTAGC 60.135 52.381 6.62 6.62 46.19 3.42
3228 3768 2.941453 TCCTTGTAACGAGCAGCTAG 57.059 50.000 0.00 0.00 0.00 3.42
3229 3769 3.887621 ATTCCTTGTAACGAGCAGCTA 57.112 42.857 0.00 0.00 0.00 3.32
3230 3770 2.770164 ATTCCTTGTAACGAGCAGCT 57.230 45.000 0.00 0.00 0.00 4.24
3231 3771 2.608090 GGTATTCCTTGTAACGAGCAGC 59.392 50.000 0.00 0.00 0.00 5.25
3232 3772 3.865745 CAGGTATTCCTTGTAACGAGCAG 59.134 47.826 0.00 0.00 43.07 4.24
3233 3773 3.512329 TCAGGTATTCCTTGTAACGAGCA 59.488 43.478 0.00 0.00 43.07 4.26
3234 3774 4.119442 TCAGGTATTCCTTGTAACGAGC 57.881 45.455 0.00 0.00 43.07 5.03
3239 3779 9.667107 CTTTGAGTTATCAGGTATTCCTTGTAA 57.333 33.333 0.00 0.00 43.07 2.41
3271 3811 8.977267 AAGTATATATACTATCCTCGGTGGTC 57.023 38.462 22.74 0.00 42.47 4.02
3316 3856 5.042463 TCACACTAAATTCACCACTTCCA 57.958 39.130 0.00 0.00 0.00 3.53
3370 3910 5.975344 AGCTGATGATAATTTGCAACAATCG 59.025 36.000 0.00 0.00 0.00 3.34
3400 3940 1.301953 CACAGTAGTGCAGCTGCCA 60.302 57.895 34.64 20.24 39.21 4.92
3427 3967 4.376225 ACTAGCTCTATACCCTCCTGAC 57.624 50.000 0.00 0.00 0.00 3.51
3430 3970 5.390387 CAGAAACTAGCTCTATACCCTCCT 58.610 45.833 0.00 0.00 0.00 3.69
3463 4005 4.093998 CAGTCCATCAGTTGCACTATCAAC 59.906 45.833 0.00 0.00 44.88 3.18
3469 4011 2.645838 AACAGTCCATCAGTTGCACT 57.354 45.000 0.00 0.00 0.00 4.40
3492 4854 7.520798 TCTAGTACCCTCGGTCTCATTATTTA 58.479 38.462 0.00 0.00 37.09 1.40
3544 4906 4.558226 AATACACCAGTGCATCTTCTCA 57.442 40.909 0.00 0.00 0.00 3.27
3545 4907 5.665459 ACTAATACACCAGTGCATCTTCTC 58.335 41.667 0.00 0.00 0.00 2.87
3561 4923 6.913873 TTGCTTATTTCGTGGGACTAATAC 57.086 37.500 0.00 0.00 0.00 1.89
3601 4963 1.992557 ACCTGGCTTTGACCCATAAGA 59.007 47.619 0.00 0.00 0.00 2.10
3622 4984 1.453015 GCAATGGCATCCCCGTGTA 60.453 57.895 0.00 0.00 40.72 2.90
3641 5003 2.678190 GCAATATCCCGGTGATAGGAGC 60.678 54.545 15.14 14.03 39.29 4.70
3708 5073 8.571336 CCATTATTAAAGTGTGATTCAGATCCC 58.429 37.037 0.00 0.00 0.00 3.85
3727 5092 8.511126 ACCTTGTGGAGTATTATTCCCATTATT 58.489 33.333 3.04 0.00 37.04 1.40
3728 5093 8.057246 ACCTTGTGGAGTATTATTCCCATTAT 57.943 34.615 3.04 0.00 37.04 1.28
3780 5145 2.154462 ACGCTTTTCACCTGATCTTGG 58.846 47.619 0.00 0.00 0.00 3.61
3841 5207 8.395605 TCTTTTTACCCCCTTCAACACTTATAT 58.604 33.333 0.00 0.00 0.00 0.86
3901 5267 8.212995 ACACTAGCTTTTTACCCTGTAAAACTA 58.787 33.333 10.72 9.35 0.00 2.24
3965 5461 2.261037 CACACCCGTGCAAACATATG 57.739 50.000 0.00 0.00 36.06 1.78
4012 5508 9.120538 GTATCAAGAAATATTAGCCCACTCAAA 57.879 33.333 0.00 0.00 0.00 2.69
4037 5533 7.499321 TTTTATTGTTCATCAAGGTACACGT 57.501 32.000 0.00 0.00 39.55 4.49
4069 5565 9.546428 TCATCGTCATCACATATTTTATTGACT 57.454 29.630 0.00 0.00 32.01 3.41
4070 5566 9.586150 GTCATCGTCATCACATATTTTATTGAC 57.414 33.333 0.00 0.00 0.00 3.18
4071 5567 9.323985 TGTCATCGTCATCACATATTTTATTGA 57.676 29.630 0.00 0.00 0.00 2.57
4072 5568 9.934190 TTGTCATCGTCATCACATATTTTATTG 57.066 29.630 0.00 0.00 0.00 1.90
4076 5572 9.546428 TCTATTGTCATCGTCATCACATATTTT 57.454 29.630 0.00 0.00 0.00 1.82
4077 5573 9.201127 CTCTATTGTCATCGTCATCACATATTT 57.799 33.333 0.00 0.00 0.00 1.40
4078 5574 8.363390 ACTCTATTGTCATCGTCATCACATATT 58.637 33.333 0.00 0.00 0.00 1.28
4079 5575 7.811713 CACTCTATTGTCATCGTCATCACATAT 59.188 37.037 0.00 0.00 0.00 1.78
4080 5576 7.141363 CACTCTATTGTCATCGTCATCACATA 58.859 38.462 0.00 0.00 0.00 2.29
4081 5577 5.981915 CACTCTATTGTCATCGTCATCACAT 59.018 40.000 0.00 0.00 0.00 3.21
4082 5578 5.105756 ACACTCTATTGTCATCGTCATCACA 60.106 40.000 0.00 0.00 0.00 3.58
4083 5579 5.344066 ACACTCTATTGTCATCGTCATCAC 58.656 41.667 0.00 0.00 0.00 3.06
4084 5580 5.582689 ACACTCTATTGTCATCGTCATCA 57.417 39.130 0.00 0.00 0.00 3.07
4085 5581 7.536964 CAGATACACTCTATTGTCATCGTCATC 59.463 40.741 0.00 0.00 31.13 2.92
4086 5582 7.366513 CAGATACACTCTATTGTCATCGTCAT 58.633 38.462 0.00 0.00 31.13 3.06
4087 5583 6.238759 CCAGATACACTCTATTGTCATCGTCA 60.239 42.308 0.00 0.00 31.13 4.35
4088 5584 6.017026 TCCAGATACACTCTATTGTCATCGTC 60.017 42.308 0.00 0.00 31.13 4.20
4089 5585 5.828328 TCCAGATACACTCTATTGTCATCGT 59.172 40.000 0.00 0.00 31.13 3.73
4090 5586 6.319141 TCCAGATACACTCTATTGTCATCG 57.681 41.667 0.00 0.00 31.13 3.84
4091 5587 7.890515 TCATCCAGATACACTCTATTGTCATC 58.109 38.462 0.00 0.00 31.13 2.92
4092 5588 7.039152 CCTCATCCAGATACACTCTATTGTCAT 60.039 40.741 0.00 0.00 31.13 3.06
4093 5589 6.266330 CCTCATCCAGATACACTCTATTGTCA 59.734 42.308 0.00 0.00 31.13 3.58
4094 5590 6.266558 ACCTCATCCAGATACACTCTATTGTC 59.733 42.308 0.00 0.00 31.13 3.18
4095 5591 6.139671 ACCTCATCCAGATACACTCTATTGT 58.860 40.000 0.00 0.00 31.13 2.71
4096 5592 6.662865 ACCTCATCCAGATACACTCTATTG 57.337 41.667 0.00 0.00 31.13 1.90
4097 5593 6.909550 GACCTCATCCAGATACACTCTATT 57.090 41.667 0.00 0.00 31.13 1.73
4121 5617 1.003545 CACGCACACCTCAACAAAGAG 60.004 52.381 0.00 0.00 35.39 2.85
4122 5618 1.013596 CACGCACACCTCAACAAAGA 58.986 50.000 0.00 0.00 0.00 2.52
4123 5619 0.029300 CCACGCACACCTCAACAAAG 59.971 55.000 0.00 0.00 0.00 2.77
4124 5620 1.380403 CCCACGCACACCTCAACAAA 61.380 55.000 0.00 0.00 0.00 2.83
4125 5621 1.821759 CCCACGCACACCTCAACAA 60.822 57.895 0.00 0.00 0.00 2.83
4126 5622 2.203139 CCCACGCACACCTCAACA 60.203 61.111 0.00 0.00 0.00 3.33
4127 5623 0.533308 TAACCCACGCACACCTCAAC 60.533 55.000 0.00 0.00 0.00 3.18
4128 5624 0.398696 ATAACCCACGCACACCTCAA 59.601 50.000 0.00 0.00 0.00 3.02
4129 5625 0.036765 GATAACCCACGCACACCTCA 60.037 55.000 0.00 0.00 0.00 3.86
4130 5626 0.249398 AGATAACCCACGCACACCTC 59.751 55.000 0.00 0.00 0.00 3.85
4131 5627 0.690762 AAGATAACCCACGCACACCT 59.309 50.000 0.00 0.00 0.00 4.00
4132 5628 0.802494 CAAGATAACCCACGCACACC 59.198 55.000 0.00 0.00 0.00 4.16
4133 5629 1.196808 CACAAGATAACCCACGCACAC 59.803 52.381 0.00 0.00 0.00 3.82
4134 5630 1.202710 ACACAAGATAACCCACGCACA 60.203 47.619 0.00 0.00 0.00 4.57
4135 5631 1.196808 CACACAAGATAACCCACGCAC 59.803 52.381 0.00 0.00 0.00 5.34
4136 5632 1.202710 ACACACAAGATAACCCACGCA 60.203 47.619 0.00 0.00 0.00 5.24
4137 5633 1.196808 CACACACAAGATAACCCACGC 59.803 52.381 0.00 0.00 0.00 5.34
4138 5634 1.196808 GCACACACAAGATAACCCACG 59.803 52.381 0.00 0.00 0.00 4.94
4139 5635 1.539827 GGCACACACAAGATAACCCAC 59.460 52.381 0.00 0.00 0.00 4.61
4140 5636 1.880221 CGGCACACACAAGATAACCCA 60.880 52.381 0.00 0.00 0.00 4.51
4141 5637 0.802494 CGGCACACACAAGATAACCC 59.198 55.000 0.00 0.00 0.00 4.11
4142 5638 0.168128 GCGGCACACACAAGATAACC 59.832 55.000 0.00 0.00 0.00 2.85
4143 5639 1.156736 AGCGGCACACACAAGATAAC 58.843 50.000 1.45 0.00 0.00 1.89
4144 5640 1.535028 CAAGCGGCACACACAAGATAA 59.465 47.619 1.45 0.00 0.00 1.75
4145 5641 1.155889 CAAGCGGCACACACAAGATA 58.844 50.000 1.45 0.00 0.00 1.98
4146 5642 1.518056 CCAAGCGGCACACACAAGAT 61.518 55.000 1.45 0.00 0.00 2.40
4147 5643 2.186160 CCAAGCGGCACACACAAGA 61.186 57.895 1.45 0.00 0.00 3.02
4148 5644 2.332514 CCAAGCGGCACACACAAG 59.667 61.111 1.45 0.00 0.00 3.16
4160 5656 2.051345 CGTCACAAACCGCCAAGC 60.051 61.111 0.00 0.00 0.00 4.01
4161 5657 1.720694 AACCGTCACAAACCGCCAAG 61.721 55.000 0.00 0.00 0.00 3.61
4162 5658 1.313812 AAACCGTCACAAACCGCCAA 61.314 50.000 0.00 0.00 0.00 4.52
4163 5659 1.313812 AAAACCGTCACAAACCGCCA 61.314 50.000 0.00 0.00 0.00 5.69
4164 5660 0.662085 TAAAACCGTCACAAACCGCC 59.338 50.000 0.00 0.00 0.00 6.13
4165 5661 1.922880 GCTAAAACCGTCACAAACCGC 60.923 52.381 0.00 0.00 0.00 5.68
4166 5662 1.600485 AGCTAAAACCGTCACAAACCG 59.400 47.619 0.00 0.00 0.00 4.44
4167 5663 2.349155 CGAGCTAAAACCGTCACAAACC 60.349 50.000 0.00 0.00 0.00 3.27
4168 5664 2.540931 TCGAGCTAAAACCGTCACAAAC 59.459 45.455 0.00 0.00 0.00 2.93
4169 5665 2.823984 TCGAGCTAAAACCGTCACAAA 58.176 42.857 0.00 0.00 0.00 2.83
4170 5666 2.512485 TCGAGCTAAAACCGTCACAA 57.488 45.000 0.00 0.00 0.00 3.33
4171 5667 2.736144 ATCGAGCTAAAACCGTCACA 57.264 45.000 0.00 0.00 0.00 3.58
4172 5668 4.392216 GAAAATCGAGCTAAAACCGTCAC 58.608 43.478 0.00 0.00 0.00 3.67
4173 5669 3.434299 GGAAAATCGAGCTAAAACCGTCA 59.566 43.478 0.00 0.00 0.00 4.35
4174 5670 3.483085 CGGAAAATCGAGCTAAAACCGTC 60.483 47.826 0.00 0.00 34.39 4.79
4175 5671 2.414138 CGGAAAATCGAGCTAAAACCGT 59.586 45.455 0.00 0.00 34.39 4.83
4176 5672 2.414138 ACGGAAAATCGAGCTAAAACCG 59.586 45.455 0.00 0.00 42.78 4.44
4177 5673 4.414999 AACGGAAAATCGAGCTAAAACC 57.585 40.909 0.00 0.00 0.00 3.27
4178 5674 9.545611 TTAATTAACGGAAAATCGAGCTAAAAC 57.454 29.630 0.00 0.00 0.00 2.43
4179 5675 9.545611 GTTAATTAACGGAAAATCGAGCTAAAA 57.454 29.630 12.39 0.00 0.00 1.52
4180 5676 8.177013 GGTTAATTAACGGAAAATCGAGCTAAA 58.823 33.333 19.48 0.00 37.07 1.85
4181 5677 7.464444 CGGTTAATTAACGGAAAATCGAGCTAA 60.464 37.037 24.20 0.00 38.36 3.09
4182 5678 6.019640 CGGTTAATTAACGGAAAATCGAGCTA 60.020 38.462 24.20 0.00 38.36 3.32
4183 5679 5.220529 CGGTTAATTAACGGAAAATCGAGCT 60.221 40.000 24.20 0.00 38.36 4.09
4184 5680 4.959757 CGGTTAATTAACGGAAAATCGAGC 59.040 41.667 24.20 6.45 38.36 5.03
4185 5681 6.335176 TCGGTTAATTAACGGAAAATCGAG 57.665 37.500 27.04 8.80 40.86 4.04
4186 5682 5.220453 GCTCGGTTAATTAACGGAAAATCGA 60.220 40.000 28.12 22.42 42.40 3.59
4187 5683 4.959757 GCTCGGTTAATTAACGGAAAATCG 59.040 41.667 28.12 20.30 42.40 3.34
4188 5684 5.871539 TGCTCGGTTAATTAACGGAAAATC 58.128 37.500 28.12 20.22 42.40 2.17
4189 5685 5.883503 TGCTCGGTTAATTAACGGAAAAT 57.116 34.783 28.12 0.00 42.40 1.82
4190 5686 5.239087 AGTTGCTCGGTTAATTAACGGAAAA 59.761 36.000 28.12 23.36 42.40 2.29
4191 5687 4.756135 AGTTGCTCGGTTAATTAACGGAAA 59.244 37.500 28.12 21.13 42.40 3.13
4192 5688 4.317488 AGTTGCTCGGTTAATTAACGGAA 58.683 39.130 28.12 17.77 42.40 4.30
4193 5689 3.928375 GAGTTGCTCGGTTAATTAACGGA 59.072 43.478 27.19 27.19 41.32 4.69
4194 5690 3.930848 AGAGTTGCTCGGTTAATTAACGG 59.069 43.478 23.09 23.09 37.07 4.44
4195 5691 5.127371 GAGAGTTGCTCGGTTAATTAACG 57.873 43.478 19.48 15.12 35.36 3.18
4200 5696 8.690883 AAGCAGAAGAGAGTTGCTCGGTTAAT 62.691 42.308 0.00 0.00 46.72 1.40
4201 5697 7.473792 AAGCAGAAGAGAGTTGCTCGGTTAA 62.474 44.000 0.00 0.00 46.72 2.01
4202 5698 6.066514 AAGCAGAAGAGAGTTGCTCGGTTA 62.067 45.833 0.00 0.00 46.72 2.85
4203 5699 5.373203 AAGCAGAAGAGAGTTGCTCGGTT 62.373 47.826 0.00 0.00 46.72 4.44
4204 5700 3.925569 AAGCAGAAGAGAGTTGCTCGGT 61.926 50.000 0.00 0.00 46.72 4.69
4205 5701 1.337635 AAGCAGAAGAGAGTTGCTCGG 60.338 52.381 0.00 0.00 46.72 4.63
4206 5702 2.077413 AAGCAGAAGAGAGTTGCTCG 57.923 50.000 0.00 0.00 46.72 5.03
4207 5703 7.602517 TTAATTAAGCAGAAGAGAGTTGCTC 57.397 36.000 0.00 0.00 46.72 4.26
4209 5705 9.319143 TCTATTAATTAAGCAGAAGAGAGTTGC 57.681 33.333 3.94 0.00 38.09 4.17
4215 5711 8.934825 GCCTCATCTATTAATTAAGCAGAAGAG 58.065 37.037 22.81 22.81 32.10 2.85
4216 5712 8.432013 TGCCTCATCTATTAATTAAGCAGAAGA 58.568 33.333 13.43 13.18 0.00 2.87
4217 5713 8.613060 TGCCTCATCTATTAATTAAGCAGAAG 57.387 34.615 13.43 10.54 0.00 2.85
4218 5714 8.978874 TTGCCTCATCTATTAATTAAGCAGAA 57.021 30.769 13.43 2.08 0.00 3.02
4219 5715 8.978874 TTTGCCTCATCTATTAATTAAGCAGA 57.021 30.769 12.33 12.33 0.00 4.26
4220 5716 9.455847 GTTTTGCCTCATCTATTAATTAAGCAG 57.544 33.333 3.94 4.02 0.00 4.24
4221 5717 9.189156 AGTTTTGCCTCATCTATTAATTAAGCA 57.811 29.630 3.94 2.63 0.00 3.91
4226 5722 9.154847 GCAAAAGTTTTGCCTCATCTATTAATT 57.845 29.630 33.57 0.00 39.38 1.40
4227 5723 8.707938 GCAAAAGTTTTGCCTCATCTATTAAT 57.292 30.769 33.57 0.00 39.38 1.40
4240 5736 1.934589 AACGGAGGCAAAAGTTTTGC 58.065 45.000 34.99 34.99 44.22 3.68
4241 5737 2.533942 CGAAACGGAGGCAAAAGTTTTG 59.466 45.455 21.60 21.60 37.00 2.44
4242 5738 2.424246 TCGAAACGGAGGCAAAAGTTTT 59.576 40.909 0.00 0.00 37.00 2.43
4243 5739 2.018515 TCGAAACGGAGGCAAAAGTTT 58.981 42.857 0.00 0.37 39.21 2.66
4244 5740 1.670791 TCGAAACGGAGGCAAAAGTT 58.329 45.000 0.00 0.00 0.00 2.66
4245 5741 1.670791 TTCGAAACGGAGGCAAAAGT 58.329 45.000 0.00 0.00 0.00 2.66
4246 5742 2.766970 TTTCGAAACGGAGGCAAAAG 57.233 45.000 6.47 0.00 0.00 2.27
4247 5743 3.505464 TTTTTCGAAACGGAGGCAAAA 57.495 38.095 10.79 0.00 0.00 2.44
4351 5847 7.213678 GGAAACCACTAATTGTTGGAAAATGA 58.786 34.615 12.81 0.00 0.00 2.57
4574 6071 1.078848 AGCTAAGCAAGACAGGCCG 60.079 57.895 0.00 0.00 0.00 6.13
4590 6087 2.566952 ACAAGTGTTTCAGTTGCAGC 57.433 45.000 14.64 0.00 45.50 5.25
4596 6093 5.105957 TGCACAACATTACAAGTGTTTCAGT 60.106 36.000 0.00 0.00 37.69 3.41
4609 6106 3.317711 CCAGTTCAACCTGCACAACATTA 59.682 43.478 0.00 0.00 0.00 1.90
4661 6158 6.436847 AGAATGTCATCCGATGTATCTGATCT 59.563 38.462 8.24 2.70 29.84 2.75
4664 6161 5.772169 AGAGAATGTCATCCGATGTATCTGA 59.228 40.000 8.24 0.00 0.00 3.27
4738 6235 6.039047 CAGATAACCTTTGAATGACATCTGGG 59.961 42.308 0.00 0.00 0.00 4.45
4745 6242 7.913674 ACTTCTCAGATAACCTTTGAATGAC 57.086 36.000 0.00 0.00 0.00 3.06
4969 6466 2.742053 ACGAAAATCATCCAGGACAACG 59.258 45.455 0.00 0.00 0.00 4.10
4977 6474 1.916506 TGGGCAACGAAAATCATCCA 58.083 45.000 0.00 0.00 37.60 3.41
5065 6562 9.362151 ACCTAAAGATTGATAGGAAACAAAACA 57.638 29.630 5.88 0.00 41.03 2.83
5125 6622 9.530129 CTCGTAAGTCTGAATACAAACATTTTC 57.470 33.333 3.67 0.00 39.48 2.29
5188 6685 1.000955 CTGCGTCTTAGGACAGGTGTT 59.999 52.381 5.77 0.00 42.21 3.32
6063 7560 0.594602 GATGCTGTTGCTGCTGTTCA 59.405 50.000 0.00 0.00 40.48 3.18
6156 7653 1.168714 GCAACTGGATCGCTTTCCTT 58.831 50.000 3.76 0.00 36.68 3.36
6159 7656 1.806542 TCAAGCAACTGGATCGCTTTC 59.193 47.619 2.46 0.00 43.23 2.62
6245 7742 0.250770 GGACAGGGTTTGGGACTGAC 60.251 60.000 0.00 0.00 36.17 3.51
6438 7935 0.028242 TTGTACAGCCAAAACGCACG 59.972 50.000 0.00 0.00 0.00 5.34
6621 8127 7.063426 CACCCAGTACAAGCATATTACGATATG 59.937 40.741 0.00 0.00 45.20 1.78
6629 8135 2.242196 AGGCACCCAGTACAAGCATATT 59.758 45.455 0.00 0.00 0.00 1.28
6813 8326 1.392589 ACATCGCCACATGGATTTCC 58.607 50.000 0.87 0.00 37.39 3.13
6827 8340 3.302286 CGCACAGATTGATCAGAACATCG 60.302 47.826 0.00 0.00 0.00 3.84
6829 8342 2.353889 GCGCACAGATTGATCAGAACAT 59.646 45.455 0.30 0.00 0.00 2.71
6839 8352 1.717113 CAACAACATGCGCACAGATTG 59.283 47.619 14.90 17.05 33.08 2.67
6847 8364 2.049077 TTCATGACAACAACATGCGC 57.951 45.000 0.00 0.00 43.03 6.09
6870 8387 2.527100 AGAAACGAGAAATCTACCGCG 58.473 47.619 0.00 0.00 0.00 6.46
6873 8390 5.181433 AGCCAAAAGAAACGAGAAATCTACC 59.819 40.000 0.00 0.00 0.00 3.18
6893 8439 2.682494 GGACCCGGACTACAGCCA 60.682 66.667 0.73 0.00 0.00 4.75
6914 8460 4.885907 CCATCAAGAATCCAGCTACATTGT 59.114 41.667 0.00 0.00 0.00 2.71
7174 8733 0.321298 CAAGTCCTACCCACCGTTGG 60.321 60.000 0.00 0.00 43.50 3.77
7200 8759 2.784654 CCCCGATCTCTCCCTCCCT 61.785 68.421 0.00 0.00 0.00 4.20
7201 8760 2.203714 CCCCGATCTCTCCCTCCC 60.204 72.222 0.00 0.00 0.00 4.30
7202 8761 2.920384 GCCCCGATCTCTCCCTCC 60.920 72.222 0.00 0.00 0.00 4.30
7203 8762 3.299190 CGCCCCGATCTCTCCCTC 61.299 72.222 0.00 0.00 0.00 4.30
7218 8777 2.050985 GCGCATAATTGAGGCCGC 60.051 61.111 0.30 0.00 0.00 6.53
7256 8815 3.118542 GCAAACCAAGCTCACTTTCTTG 58.881 45.455 0.00 0.00 39.38 3.02
7284 8847 2.548295 GGCTCCGGCTCGAGTCTAG 61.548 68.421 16.21 13.15 38.73 2.43
7285 8848 2.516460 GGCTCCGGCTCGAGTCTA 60.516 66.667 16.21 1.92 38.73 2.59
7286 8849 4.434354 AGGCTCCGGCTCGAGTCT 62.434 66.667 16.21 2.36 40.03 3.24
7287 8850 4.200283 CAGGCTCCGGCTCGAGTC 62.200 72.222 15.13 11.34 35.88 3.36
7295 8858 3.842923 AGTCGCATCAGGCTCCGG 61.843 66.667 0.00 0.00 41.67 5.14


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.