Multiple sequence alignment - TraesCS4A01G096900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G096900 chr4A 100.000 5484 0 0 1 5484 106347587 106342104 0.000000e+00 10128.0
1 TraesCS4A01G096900 chr4A 92.336 535 27 2 37 558 182899128 182899661 0.000000e+00 749.0
2 TraesCS4A01G096900 chr4A 95.906 171 6 1 3768 3937 560316469 560316299 5.410000e-70 276.0
3 TraesCS4A01G096900 chr4A 89.744 195 14 1 3259 3453 106343979 106343791 1.530000e-60 244.0
4 TraesCS4A01G096900 chr4A 89.744 195 14 1 3609 3797 106344329 106344135 1.530000e-60 244.0
5 TraesCS4A01G096900 chr4B 92.374 3016 128 45 553 3536 443446165 443449110 0.000000e+00 4202.0
6 TraesCS4A01G096900 chr4B 94.055 942 37 7 3933 4871 443449623 443450548 0.000000e+00 1411.0
7 TraesCS4A01G096900 chr4B 89.286 616 37 11 4869 5484 443450808 443451394 0.000000e+00 745.0
8 TraesCS4A01G096900 chr4B 95.816 239 10 0 3534 3772 443449386 443449624 2.400000e-103 387.0
9 TraesCS4A01G096900 chr4B 94.928 138 7 0 3259 3396 443449461 443449598 3.330000e-52 217.0
10 TraesCS4A01G096900 chr4B 95.098 102 4 1 3609 3709 443448853 443448954 5.690000e-35 159.0
11 TraesCS4A01G096900 chr4D 93.257 2195 100 19 553 2729 359117833 359119997 0.000000e+00 3190.0
12 TraesCS4A01G096900 chr4D 95.046 1514 53 15 3981 5484 359120890 359122391 0.000000e+00 2361.0
13 TraesCS4A01G096900 chr4D 94.269 506 27 2 2716 3220 359120096 359120600 0.000000e+00 773.0
14 TraesCS4A01G096900 chr4D 97.576 165 3 1 3609 3772 359120706 359120870 1.160000e-71 281.0
15 TraesCS4A01G096900 chr4D 90.805 174 9 2 3256 3428 359120703 359120870 5.530000e-55 226.0
16 TraesCS4A01G096900 chr5A 95.220 523 22 3 37 558 570475601 570476121 0.000000e+00 824.0
17 TraesCS4A01G096900 chr5A 93.407 182 10 2 3756 3935 595422938 595422757 9.050000e-68 268.0
18 TraesCS4A01G096900 chr3D 94.615 520 27 1 39 558 528129371 528128853 0.000000e+00 804.0
19 TraesCS4A01G096900 chr3D 94.286 175 9 1 3761 3934 19541737 19541911 3.260000e-67 267.0
20 TraesCS4A01G096900 chr7D 94.231 520 25 5 39 556 601586444 601585928 0.000000e+00 789.0
21 TraesCS4A01G096900 chr1A 93.487 522 31 3 37 556 544083712 544084232 0.000000e+00 773.0
22 TraesCS4A01G096900 chr7B 92.898 521 35 2 37 557 730773775 730773257 0.000000e+00 756.0
23 TraesCS4A01G096900 chr7B 92.067 479 36 2 79 557 730791929 730791453 0.000000e+00 673.0
24 TraesCS4A01G096900 chr7B 100.000 28 0 0 3426 3453 201496473 201496446 1.000000e-02 52.8
25 TraesCS4A01G096900 chr3A 90.485 536 25 4 37 555 142645077 142644551 0.000000e+00 684.0
26 TraesCS4A01G096900 chr3A 90.674 193 16 2 3762 3954 648488971 648488781 7.050000e-64 255.0
27 TraesCS4A01G096900 chr7A 96.970 165 5 0 3771 3935 285693571 285693735 1.500000e-70 278.0
28 TraesCS4A01G096900 chr7A 96.951 164 5 0 3771 3934 517576142 517575979 5.410000e-70 276.0
29 TraesCS4A01G096900 chrUn 95.882 170 5 2 3768 3936 88818617 88818785 1.950000e-69 274.0
30 TraesCS4A01G096900 chrUn 100.000 28 0 0 3426 3453 80550604 80550631 1.000000e-02 52.8
31 TraesCS4A01G096900 chr1D 95.833 168 7 0 3767 3934 383724228 383724395 7.000000e-69 272.0
32 TraesCS4A01G096900 chr2D 91.237 194 12 4 3771 3961 300705133 300704942 5.450000e-65 259.0
33 TraesCS4A01G096900 chr2D 96.970 33 1 0 3421 3453 400383631 400383663 7.670000e-04 56.5
34 TraesCS4A01G096900 chr2D 100.000 28 0 0 3426 3453 96783250 96783223 1.000000e-02 52.8
35 TraesCS4A01G096900 chr5D 100.000 36 0 0 1 36 311760646 311760681 3.550000e-07 67.6
36 TraesCS4A01G096900 chr1B 100.000 30 0 0 3426 3455 393079091 393079120 7.670000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G096900 chr4A 106342104 106347587 5483 True 3538.666667 10128 93.162667 1 5484 3 chr4A.!!$R2 5483
1 TraesCS4A01G096900 chr4A 182899128 182899661 533 False 749.000000 749 92.336000 37 558 1 chr4A.!!$F1 521
2 TraesCS4A01G096900 chr4B 443446165 443451394 5229 False 1186.833333 4202 93.592833 553 5484 6 chr4B.!!$F1 4931
3 TraesCS4A01G096900 chr4D 359117833 359122391 4558 False 1366.200000 3190 94.190600 553 5484 5 chr4D.!!$F1 4931
4 TraesCS4A01G096900 chr5A 570475601 570476121 520 False 824.000000 824 95.220000 37 558 1 chr5A.!!$F1 521
5 TraesCS4A01G096900 chr3D 528128853 528129371 518 True 804.000000 804 94.615000 39 558 1 chr3D.!!$R1 519
6 TraesCS4A01G096900 chr7D 601585928 601586444 516 True 789.000000 789 94.231000 39 556 1 chr7D.!!$R1 517
7 TraesCS4A01G096900 chr1A 544083712 544084232 520 False 773.000000 773 93.487000 37 556 1 chr1A.!!$F1 519
8 TraesCS4A01G096900 chr7B 730773257 730773775 518 True 756.000000 756 92.898000 37 557 1 chr7B.!!$R2 520
9 TraesCS4A01G096900 chr3A 142644551 142645077 526 True 684.000000 684 90.485000 37 555 1 chr3A.!!$R1 518

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
449 482 0.968901 TCTTATGGTCGTCGCACCCT 60.969 55.0 10.19 4.79 35.26 4.34 F
1542 1627 1.009078 GCAGCAATGCGACTGATACA 58.991 50.0 0.00 0.00 35.90 2.29 F
2129 2214 0.313672 TTCGTGCTGTTGGAAATGGC 59.686 50.0 0.00 0.00 0.00 4.40 F
2194 2279 0.984961 TTCCAGCCCCTCTCATGGAG 60.985 60.0 0.00 0.00 42.54 3.86 F
3415 3684 0.666913 ACTCGCGTACAACTGACTGT 59.333 50.0 5.77 0.00 0.00 3.55 F
3416 3685 1.053048 CTCGCGTACAACTGACTGTG 58.947 55.0 5.77 0.00 0.00 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1710 1795 0.460284 CGTCGATCCACCCCTTGAAG 60.460 60.000 0.00 0.0 0.00 3.02 R
3160 3360 0.323999 AGCATGATGGCTTGCCTCAA 60.324 50.000 13.18 0.0 42.71 3.02 R
3400 3669 0.600255 AGCCACAGTCAGTTGTACGC 60.600 55.000 0.00 0.0 0.00 4.42 R
3814 4362 1.271856 ACATCCGTATGTGGTGACCA 58.728 50.000 0.00 0.0 44.79 4.02 R
4231 4779 1.004440 GCGGTTCTTGTCCAGAGCT 60.004 57.895 0.00 0.0 33.26 4.09 R
4486 5034 1.077265 CATGGAACCCAGCAACCCT 59.923 57.895 0.00 0.0 36.75 4.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
191 205 1.094785 GCATGTGATAACGCCCTTGT 58.905 50.000 0.00 0.00 0.00 3.16
255 286 2.838225 AGGACCGATCGGCCGATT 60.838 61.111 39.14 25.50 39.32 3.34
277 308 2.161808 GTCGTCGAGATGGACTCTTTGA 59.838 50.000 0.00 0.00 42.92 2.69
281 312 3.056465 GTCGAGATGGACTCTTTGAAGGT 60.056 47.826 0.00 0.00 42.92 3.50
326 357 2.544486 CGATTGATCGCTCTGTCCATCA 60.544 50.000 0.00 0.00 43.84 3.07
361 392 2.004583 TATCAAAAGACTGGCGACGG 57.995 50.000 0.00 0.00 44.60 4.79
401 434 7.360361 GTCCATTTTTCTCATTGTAGTCGTTT 58.640 34.615 0.00 0.00 0.00 3.60
449 482 0.968901 TCTTATGGTCGTCGCACCCT 60.969 55.000 10.19 4.79 35.26 4.34
460 495 2.412323 CGCACCCTCCGTACTGCTA 61.412 63.158 1.68 0.00 0.00 3.49
468 503 3.323979 CCCTCCGTACTGCTATATGGTTT 59.676 47.826 6.10 0.00 33.52 3.27
549 584 5.560966 TGAGAATTTCTATTTCCCGCAAC 57.439 39.130 0.00 0.00 0.00 4.17
659 696 3.259374 TCCTTCTCTGTGACATGGAAGTC 59.741 47.826 18.94 0.00 38.99 3.01
661 698 3.949842 TCTCTGTGACATGGAAGTCTG 57.050 47.619 0.00 0.00 39.27 3.51
678 715 4.981812 AGTCTGGTCCGGTCTAAATTTTT 58.018 39.130 0.00 0.00 0.00 1.94
834 881 3.718434 AGCAATGATAGATCCTCCAACCA 59.282 43.478 0.00 0.00 0.00 3.67
835 882 4.070716 GCAATGATAGATCCTCCAACCAG 58.929 47.826 0.00 0.00 0.00 4.00
924 979 1.403687 CCCAGTCCTAGCCACTAGCC 61.404 65.000 0.00 0.00 45.47 3.93
955 1010 3.005539 TCAGACCCAGCCAGCCTC 61.006 66.667 0.00 0.00 0.00 4.70
977 1032 3.636231 CTCCGGTTGGACTGGCCA 61.636 66.667 4.71 4.71 44.40 5.36
988 1043 2.746277 CTGGCCAGTACCGTTGCC 60.746 66.667 25.53 5.79 44.27 4.52
1088 1146 1.446272 GTGCGCCACCACTCTACTC 60.446 63.158 4.18 0.00 33.02 2.59
1113 1172 3.804193 CCTCGCCTCGCTTTTGGC 61.804 66.667 0.00 0.00 45.25 4.52
1137 1196 2.768492 GCATCAGCTTTCCAGGCCG 61.768 63.158 0.00 0.00 37.91 6.13
1154 1214 4.415332 GCGTTCCGGTCTGAGCGA 62.415 66.667 28.55 13.06 42.41 4.93
1155 1215 2.202492 CGTTCCGGTCTGAGCGAG 60.202 66.667 28.55 18.48 42.41 5.03
1162 1222 1.801771 CCGGTCTGAGCGAGTAGATAG 59.198 57.143 28.55 7.11 42.41 2.08
1166 1226 3.316868 GGTCTGAGCGAGTAGATAGCTTT 59.683 47.826 0.00 0.00 40.33 3.51
1183 1243 1.194098 CTTTGTGTGCTCTGCTTCTCG 59.806 52.381 0.00 0.00 0.00 4.04
1189 1249 1.067915 GTGCTCTGCTTCTCGACTTCT 60.068 52.381 0.00 0.00 0.00 2.85
1191 1251 2.258755 GCTCTGCTTCTCGACTTCTTC 58.741 52.381 0.00 0.00 0.00 2.87
1193 1253 3.758300 CTCTGCTTCTCGACTTCTTCTC 58.242 50.000 0.00 0.00 0.00 2.87
1194 1254 3.417101 TCTGCTTCTCGACTTCTTCTCT 58.583 45.455 0.00 0.00 0.00 3.10
1195 1255 4.580868 TCTGCTTCTCGACTTCTTCTCTA 58.419 43.478 0.00 0.00 0.00 2.43
1196 1256 4.634004 TCTGCTTCTCGACTTCTTCTCTAG 59.366 45.833 0.00 0.00 0.00 2.43
1205 1265 5.477291 TCGACTTCTTCTCTAGTGATTTGGT 59.523 40.000 0.00 0.00 0.00 3.67
1211 1271 5.544176 TCTTCTCTAGTGATTTGGTCCTGTT 59.456 40.000 0.00 0.00 0.00 3.16
1213 1273 6.531503 TCTCTAGTGATTTGGTCCTGTTAG 57.468 41.667 0.00 0.00 0.00 2.34
1246 1308 4.954092 AGGAATGAGCGTTTCTTGATTC 57.046 40.909 0.00 0.00 0.00 2.52
1306 1368 1.930371 GCTGGTTGATTTTGCACGGTC 60.930 52.381 0.00 0.00 0.00 4.79
1339 1401 3.336122 GGGCTTCATAGATGGCCAG 57.664 57.895 13.05 0.00 46.56 4.85
1542 1627 1.009078 GCAGCAATGCGACTGATACA 58.991 50.000 0.00 0.00 35.90 2.29
1578 1663 3.884581 TTCTTCGTCGTCGGTGCCG 62.885 63.158 3.94 3.94 41.35 5.69
1776 1861 3.912907 ACCGGGATGATCGTCGCC 61.913 66.667 22.30 16.26 0.00 5.54
1832 1917 1.273327 CAAAGAATGGCTGGTTGGTCC 59.727 52.381 0.00 0.00 0.00 4.46
1836 1921 2.445492 AATGGCTGGTTGGTCCCTGG 62.445 60.000 0.00 0.00 34.77 4.45
1843 1928 1.603739 GTTGGTCCCTGGCCTTGTC 60.604 63.158 3.32 0.00 0.00 3.18
1851 1936 1.302033 CTGGCCTTGTCGCACTTCT 60.302 57.895 3.32 0.00 0.00 2.85
1887 1972 3.119173 TGAGCTGAAGGTTTTGTGGTTTG 60.119 43.478 0.00 0.00 0.00 2.93
1891 1976 4.507756 GCTGAAGGTTTTGTGGTTTGAATC 59.492 41.667 0.00 0.00 0.00 2.52
2082 2167 9.495754 GAGTTTCTCAAATATTATCTTGTGTGC 57.504 33.333 0.00 0.00 0.00 4.57
2098 2183 4.322567 TGTGTGCTATACTCATTGTGCAA 58.677 39.130 0.00 0.00 32.10 4.08
2126 2211 2.513753 TCCATTCGTGCTGTTGGAAAT 58.486 42.857 0.00 0.00 35.38 2.17
2127 2212 2.228582 TCCATTCGTGCTGTTGGAAATG 59.771 45.455 0.00 0.00 35.38 2.32
2128 2213 2.598589 CATTCGTGCTGTTGGAAATGG 58.401 47.619 0.00 0.00 0.00 3.16
2129 2214 0.313672 TTCGTGCTGTTGGAAATGGC 59.686 50.000 0.00 0.00 0.00 4.40
2130 2215 1.080569 CGTGCTGTTGGAAATGGCC 60.081 57.895 0.00 0.00 0.00 5.36
2194 2279 0.984961 TTCCAGCCCCTCTCATGGAG 60.985 60.000 0.00 0.00 42.54 3.86
2313 2398 1.738099 CTTCTTGACTCGGTGGGCG 60.738 63.158 0.00 0.00 0.00 6.13
2314 2399 3.876589 TTCTTGACTCGGTGGGCGC 62.877 63.158 0.00 0.00 0.00 6.53
2335 2420 4.968181 CGCATGCAAATTCAGTCTCTTATG 59.032 41.667 19.57 0.00 0.00 1.90
2618 2703 5.303165 TCATGCATCTTAGTGACATGGATC 58.697 41.667 0.00 0.00 35.86 3.36
2626 2711 2.278245 AGTGACATGGATCAAAGGGGA 58.722 47.619 0.00 0.00 0.00 4.81
2678 2763 9.283420 GCAAATGAAGTTCTATTCTTTTCTAGC 57.717 33.333 4.17 0.00 35.53 3.42
2871 3070 7.778185 AGAGACATAACCAACTAACACTAGT 57.222 36.000 0.00 0.00 40.25 2.57
2902 3101 6.882140 TGTCGGATTCACTTGGTTTTATATGT 59.118 34.615 0.00 0.00 0.00 2.29
2962 3161 3.136641 AGGGGTGTGATTCTCCTACAT 57.863 47.619 0.00 0.00 0.00 2.29
2979 3178 3.272574 ACATCAGTGAGGGTGCATAAG 57.727 47.619 9.95 0.00 0.00 1.73
3070 3269 8.020819 TCCATTTTAGATTGACGATTGTTGTTC 58.979 33.333 0.00 0.00 0.00 3.18
3160 3360 2.632512 CACCCTGTAAAAGGCAAACCAT 59.367 45.455 0.00 0.00 45.89 3.55
3309 3577 2.159014 TCCACGTTCAAGTTAGCACACT 60.159 45.455 0.00 0.00 0.00 3.55
3348 3617 5.859205 ATAAATTGCCCCATCTTGTTCTC 57.141 39.130 0.00 0.00 0.00 2.87
3359 3628 7.465116 CCCCATCTTGTTCTCTAATCCAATAT 58.535 38.462 0.00 0.00 0.00 1.28
3360 3629 7.392673 CCCCATCTTGTTCTCTAATCCAATATG 59.607 40.741 0.00 0.00 0.00 1.78
3361 3630 7.094463 CCCATCTTGTTCTCTAATCCAATATGC 60.094 40.741 0.00 0.00 0.00 3.14
3362 3631 7.446319 CCATCTTGTTCTCTAATCCAATATGCA 59.554 37.037 0.00 0.00 0.00 3.96
3363 3632 7.792374 TCTTGTTCTCTAATCCAATATGCAC 57.208 36.000 0.00 0.00 0.00 4.57
3364 3633 7.337938 TCTTGTTCTCTAATCCAATATGCACA 58.662 34.615 0.00 0.00 0.00 4.57
3365 3634 7.994911 TCTTGTTCTCTAATCCAATATGCACAT 59.005 33.333 0.00 0.00 0.00 3.21
3366 3635 7.500720 TGTTCTCTAATCCAATATGCACATG 57.499 36.000 0.00 0.00 0.00 3.21
3367 3636 6.016860 TGTTCTCTAATCCAATATGCACATGC 60.017 38.462 0.00 0.00 42.50 4.06
3368 3637 5.872963 TCTCTAATCCAATATGCACATGCT 58.127 37.500 5.31 0.00 42.66 3.79
3369 3638 5.704053 TCTCTAATCCAATATGCACATGCTG 59.296 40.000 5.31 0.00 42.66 4.41
3370 3639 5.379187 TCTAATCCAATATGCACATGCTGT 58.621 37.500 5.31 0.00 42.66 4.40
3385 3654 4.826733 ACATGCTGTGATGGTAAAAAGTCA 59.173 37.500 0.00 0.00 0.00 3.41
3400 3669 9.490663 GGTAAAAAGTCAATGATGATTTACTCG 57.509 33.333 18.22 0.00 37.99 4.18
3415 3684 0.666913 ACTCGCGTACAACTGACTGT 59.333 50.000 5.77 0.00 0.00 3.55
3416 3685 1.053048 CTCGCGTACAACTGACTGTG 58.947 55.000 5.77 0.00 0.00 3.66
3441 3710 2.027385 GTTAATACTCCCTCCGTCCGT 58.973 52.381 0.00 0.00 0.00 4.69
3458 3727 4.203764 CGTCCGTAATTACTTGTCGCTAAG 59.796 45.833 13.56 0.00 0.00 2.18
3460 3729 5.454877 GTCCGTAATTACTTGTCGCTAAGAG 59.545 44.000 13.56 0.00 0.00 2.85
3461 3730 4.738740 CCGTAATTACTTGTCGCTAAGAGG 59.261 45.833 13.56 0.00 0.00 3.69
3462 3731 5.449588 CCGTAATTACTTGTCGCTAAGAGGA 60.450 44.000 13.56 0.00 0.00 3.71
3463 3732 5.681982 CGTAATTACTTGTCGCTAAGAGGAG 59.318 44.000 13.56 0.00 0.00 3.69
3471 3740 5.188327 TGTCGCTAAGAGGAGTATCAATG 57.812 43.478 0.00 0.00 36.25 2.82
3478 3747 7.275341 CGCTAAGAGGAGTATCAATGATGATTC 59.725 40.741 5.91 0.98 43.89 2.52
3488 3757 3.706086 TCAATGATGATTCGGGACAGAGA 59.294 43.478 0.00 0.00 0.00 3.10
3503 3772 6.151817 CGGGACAGAGATAGTATCAATGATGA 59.848 42.308 17.03 0.00 40.57 2.92
3536 3805 7.179516 TGTGTATGACTCATCTTGGGTAGTTAA 59.820 37.037 0.00 0.00 26.09 2.01
3537 3806 8.204836 GTGTATGACTCATCTTGGGTAGTTAAT 58.795 37.037 0.00 0.00 26.09 1.40
3571 4118 1.147473 TGCACTAATGTCAGCACACG 58.853 50.000 0.00 0.00 34.48 4.49
3576 4123 4.641954 CACTAATGTCAGCACACGAATTC 58.358 43.478 0.00 0.00 34.48 2.17
3605 4152 8.836413 TCTTGTTCCTATAATTAAATTGCCTCG 58.164 33.333 0.00 0.00 0.00 4.63
3630 4177 8.412676 CGTCTTAGTTAAACACTTAACACTACG 58.587 37.037 9.69 9.20 46.36 3.51
3685 4232 8.985315 AATTCCTCTGATCACTATAAATTGCA 57.015 30.769 0.00 0.00 0.00 4.08
3724 4272 5.146010 TCCGATATGCACATGCTGTAATA 57.854 39.130 5.31 0.00 42.66 0.98
3770 4318 7.564793 TGTATGACTGATTGTGGCTAGTTAAT 58.435 34.615 0.00 0.00 0.00 1.40
3771 4319 8.700973 TGTATGACTGATTGTGGCTAGTTAATA 58.299 33.333 0.00 0.00 0.00 0.98
3772 4320 8.979574 GTATGACTGATTGTGGCTAGTTAATAC 58.020 37.037 0.00 0.00 0.00 1.89
3773 4321 7.182817 TGACTGATTGTGGCTAGTTAATACT 57.817 36.000 0.00 0.00 38.44 2.12
3774 4322 7.265673 TGACTGATTGTGGCTAGTTAATACTC 58.734 38.462 0.00 0.00 35.78 2.59
3775 4323 6.583562 ACTGATTGTGGCTAGTTAATACTCC 58.416 40.000 0.00 0.00 35.78 3.85
3776 4324 5.925509 TGATTGTGGCTAGTTAATACTCCC 58.074 41.667 0.00 0.00 35.78 4.30
3777 4325 5.665812 TGATTGTGGCTAGTTAATACTCCCT 59.334 40.000 0.00 0.00 35.78 4.20
3778 4326 5.609533 TTGTGGCTAGTTAATACTCCCTC 57.390 43.478 0.00 0.00 35.78 4.30
3779 4327 3.965347 TGTGGCTAGTTAATACTCCCTCC 59.035 47.826 0.00 0.00 35.78 4.30
3780 4328 3.005578 GTGGCTAGTTAATACTCCCTCCG 59.994 52.174 0.00 0.00 35.78 4.63
3781 4329 3.229293 GGCTAGTTAATACTCCCTCCGT 58.771 50.000 0.00 0.00 35.78 4.69
3782 4330 3.640498 GGCTAGTTAATACTCCCTCCGTT 59.360 47.826 0.00 0.00 35.78 4.44
3783 4331 4.261952 GGCTAGTTAATACTCCCTCCGTTC 60.262 50.000 0.00 0.00 35.78 3.95
3784 4332 4.261952 GCTAGTTAATACTCCCTCCGTTCC 60.262 50.000 0.00 0.00 35.78 3.62
3785 4333 3.991683 AGTTAATACTCCCTCCGTTCCT 58.008 45.455 0.00 0.00 0.00 3.36
3786 4334 5.134725 AGTTAATACTCCCTCCGTTCCTA 57.865 43.478 0.00 0.00 0.00 2.94
3787 4335 5.522641 AGTTAATACTCCCTCCGTTCCTAA 58.477 41.667 0.00 0.00 0.00 2.69
3788 4336 5.960202 AGTTAATACTCCCTCCGTTCCTAAA 59.040 40.000 0.00 0.00 0.00 1.85
3789 4337 6.614496 AGTTAATACTCCCTCCGTTCCTAAAT 59.386 38.462 0.00 0.00 0.00 1.40
3790 4338 7.786464 AGTTAATACTCCCTCCGTTCCTAAATA 59.214 37.037 0.00 0.00 0.00 1.40
3791 4339 8.591940 GTTAATACTCCCTCCGTTCCTAAATAT 58.408 37.037 0.00 0.00 0.00 1.28
3792 4340 7.628501 AATACTCCCTCCGTTCCTAAATATT 57.371 36.000 0.00 0.00 0.00 1.28
3793 4341 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3794 4342 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3795 4343 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3796 4344 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3797 4345 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3798 4346 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3799 4347 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3800 4348 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
3801 4349 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
3802 4350 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
3803 4351 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
3804 4352 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
3817 4365 8.924511 TTGTCTTTCTAGAGATTTCAAATGGT 57.075 30.769 0.00 0.00 0.00 3.55
3818 4366 8.553459 TGTCTTTCTAGAGATTTCAAATGGTC 57.447 34.615 0.00 0.00 0.00 4.02
3819 4367 8.156820 TGTCTTTCTAGAGATTTCAAATGGTCA 58.843 33.333 0.00 0.00 0.00 4.02
3820 4368 8.447053 GTCTTTCTAGAGATTTCAAATGGTCAC 58.553 37.037 0.00 0.00 0.00 3.67
3821 4369 7.607991 TCTTTCTAGAGATTTCAAATGGTCACC 59.392 37.037 0.00 0.00 0.00 4.02
3822 4370 6.373005 TCTAGAGATTTCAAATGGTCACCA 57.627 37.500 0.00 0.00 38.19 4.17
3823 4371 6.173339 TCTAGAGATTTCAAATGGTCACCAC 58.827 40.000 0.00 0.00 35.80 4.16
3824 4372 4.728772 AGAGATTTCAAATGGTCACCACA 58.271 39.130 0.00 0.00 35.80 4.17
3825 4373 5.327732 AGAGATTTCAAATGGTCACCACAT 58.672 37.500 0.00 0.00 35.80 3.21
3826 4374 6.484288 AGAGATTTCAAATGGTCACCACATA 58.516 36.000 0.00 0.00 35.80 2.29
3827 4375 6.375455 AGAGATTTCAAATGGTCACCACATAC 59.625 38.462 0.00 0.00 35.80 2.39
3828 4376 4.757799 TTTCAAATGGTCACCACATACG 57.242 40.909 0.00 0.00 35.80 3.06
3829 4377 2.705730 TCAAATGGTCACCACATACGG 58.294 47.619 0.00 0.00 35.80 4.02
3830 4378 2.303311 TCAAATGGTCACCACATACGGA 59.697 45.455 0.00 0.00 35.80 4.69
3831 4379 3.054728 TCAAATGGTCACCACATACGGAT 60.055 43.478 0.00 0.00 35.80 4.18
3832 4380 2.620251 ATGGTCACCACATACGGATG 57.380 50.000 5.94 5.94 35.80 3.51
3834 4382 2.458620 TGGTCACCACATACGGATGTA 58.541 47.619 14.23 0.00 44.82 2.29
3835 4383 3.035363 TGGTCACCACATACGGATGTAT 58.965 45.455 14.23 1.38 44.82 2.29
3836 4384 4.216708 TGGTCACCACATACGGATGTATA 58.783 43.478 14.23 0.00 44.82 1.47
3837 4385 4.836175 TGGTCACCACATACGGATGTATAT 59.164 41.667 14.23 0.00 44.82 0.86
3838 4386 6.011481 TGGTCACCACATACGGATGTATATA 58.989 40.000 14.23 0.00 44.82 0.86
3839 4387 6.152154 TGGTCACCACATACGGATGTATATAG 59.848 42.308 14.23 0.00 44.82 1.31
3840 4388 6.376299 GGTCACCACATACGGATGTATATAGA 59.624 42.308 14.23 4.80 44.82 1.98
3841 4389 7.249147 GTCACCACATACGGATGTATATAGAC 58.751 42.308 14.23 12.97 44.82 2.59
3842 4390 6.943718 TCACCACATACGGATGTATATAGACA 59.056 38.462 14.23 2.07 44.82 3.41
3843 4391 7.614192 TCACCACATACGGATGTATATAGACAT 59.386 37.037 14.23 12.70 44.82 3.06
3844 4392 8.899771 CACCACATACGGATGTATATAGACATA 58.100 37.037 14.23 0.00 44.82 2.29
3845 4393 9.642343 ACCACATACGGATGTATATAGACATAT 57.358 33.333 14.23 5.08 44.82 1.78
3872 4420 7.700322 TGAAGTATAGATTCACTCATTTCGC 57.300 36.000 0.00 0.00 31.86 4.70
3873 4421 7.492524 TGAAGTATAGATTCACTCATTTCGCT 58.507 34.615 0.00 0.00 31.86 4.93
3874 4422 7.649705 TGAAGTATAGATTCACTCATTTCGCTC 59.350 37.037 0.00 0.00 31.86 5.03
3875 4423 6.451393 AGTATAGATTCACTCATTTCGCTCC 58.549 40.000 0.00 0.00 0.00 4.70
3876 4424 2.544685 AGATTCACTCATTTCGCTCCG 58.455 47.619 0.00 0.00 0.00 4.63
3877 4425 2.093973 AGATTCACTCATTTCGCTCCGT 60.094 45.455 0.00 0.00 0.00 4.69
3878 4426 3.130516 AGATTCACTCATTTCGCTCCGTA 59.869 43.478 0.00 0.00 0.00 4.02
3879 4427 3.520290 TTCACTCATTTCGCTCCGTAT 57.480 42.857 0.00 0.00 0.00 3.06
3880 4428 2.809446 TCACTCATTTCGCTCCGTATG 58.191 47.619 0.00 0.00 0.00 2.39
3881 4429 2.165641 TCACTCATTTCGCTCCGTATGT 59.834 45.455 0.00 0.00 0.00 2.29
3882 4430 3.379057 TCACTCATTTCGCTCCGTATGTA 59.621 43.478 0.00 0.00 0.00 2.29
3883 4431 3.731216 CACTCATTTCGCTCCGTATGTAG 59.269 47.826 0.00 0.00 0.00 2.74
3884 4432 3.380637 ACTCATTTCGCTCCGTATGTAGT 59.619 43.478 0.00 0.00 0.00 2.73
3885 4433 3.961182 TCATTTCGCTCCGTATGTAGTC 58.039 45.455 0.00 0.00 0.00 2.59
3886 4434 3.379057 TCATTTCGCTCCGTATGTAGTCA 59.621 43.478 0.00 0.00 0.00 3.41
3887 4435 4.037565 TCATTTCGCTCCGTATGTAGTCAT 59.962 41.667 0.00 0.00 38.00 3.06
3888 4436 3.620929 TTCGCTCCGTATGTAGTCATC 57.379 47.619 0.00 0.00 35.70 2.92
3889 4437 2.567985 TCGCTCCGTATGTAGTCATCA 58.432 47.619 0.00 0.00 35.70 3.07
3890 4438 3.146847 TCGCTCCGTATGTAGTCATCAT 58.853 45.455 0.00 0.00 35.70 2.45
3891 4439 3.568430 TCGCTCCGTATGTAGTCATCATT 59.432 43.478 0.00 0.00 35.70 2.57
3892 4440 4.037565 TCGCTCCGTATGTAGTCATCATTT 59.962 41.667 0.00 0.00 35.70 2.32
3893 4441 5.239963 TCGCTCCGTATGTAGTCATCATTTA 59.760 40.000 0.00 0.00 35.70 1.40
3894 4442 5.918576 CGCTCCGTATGTAGTCATCATTTAA 59.081 40.000 0.00 0.00 35.70 1.52
3895 4443 6.419710 CGCTCCGTATGTAGTCATCATTTAAA 59.580 38.462 0.00 0.00 35.70 1.52
3896 4444 7.042992 CGCTCCGTATGTAGTCATCATTTAAAA 60.043 37.037 0.00 0.00 35.70 1.52
3897 4445 8.062448 GCTCCGTATGTAGTCATCATTTAAAAC 58.938 37.037 0.00 0.00 35.70 2.43
3898 4446 8.428186 TCCGTATGTAGTCATCATTTAAAACC 57.572 34.615 0.00 0.00 35.70 3.27
3899 4447 8.262227 TCCGTATGTAGTCATCATTTAAAACCT 58.738 33.333 0.00 0.00 35.70 3.50
3900 4448 8.548721 CCGTATGTAGTCATCATTTAAAACCTC 58.451 37.037 0.00 0.00 35.70 3.85
3901 4449 9.314321 CGTATGTAGTCATCATTTAAAACCTCT 57.686 33.333 0.00 0.00 35.70 3.69
3928 4476 7.625828 AAAGACAAATATTTAGGAACGGAGG 57.374 36.000 0.00 0.00 0.00 4.30
3929 4477 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3930 4478 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3931 4479 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3960 4508 7.576861 TCTCAATGATGATTTGCATGTGTAT 57.423 32.000 0.00 0.00 37.34 2.29
3961 4509 7.422399 TCTCAATGATGATTTGCATGTGTATG 58.578 34.615 0.00 0.00 37.34 2.39
3962 4510 7.283580 TCTCAATGATGATTTGCATGTGTATGA 59.716 33.333 0.00 0.00 37.34 2.15
4045 4593 7.715249 TCTTCTGGTCGCTATAATTAAATTGCT 59.285 33.333 0.00 0.00 0.00 3.91
4115 4663 2.669434 GTCAATGATGGTTTGCATGCAC 59.331 45.455 22.58 10.13 0.00 4.57
4143 4691 8.908903 TGACTGGTACAAACTTACATGATTTTT 58.091 29.630 0.00 0.00 38.70 1.94
4357 4905 0.249911 GGTCGCAATATTCGCTCCCT 60.250 55.000 7.83 0.00 0.00 4.20
4486 5034 6.043938 AGGTGAAGAAAACATACAAGTAGGGA 59.956 38.462 0.00 0.00 0.00 4.20
4487 5035 6.371825 GGTGAAGAAAACATACAAGTAGGGAG 59.628 42.308 0.00 0.00 0.00 4.30
4490 5038 4.850386 AGAAAACATACAAGTAGGGAGGGT 59.150 41.667 0.00 0.00 0.00 4.34
4492 5040 4.569719 AACATACAAGTAGGGAGGGTTG 57.430 45.455 0.00 0.00 0.00 3.77
4493 5041 2.238898 ACATACAAGTAGGGAGGGTTGC 59.761 50.000 0.00 0.00 0.00 4.17
4494 5042 2.337359 TACAAGTAGGGAGGGTTGCT 57.663 50.000 0.00 0.00 0.00 3.91
4495 5043 0.693049 ACAAGTAGGGAGGGTTGCTG 59.307 55.000 0.00 0.00 0.00 4.41
4532 5080 2.223923 CCTTTACCTCTCTGGAGCATCG 60.224 54.545 0.00 0.00 38.21 3.84
4580 5132 5.011125 CAGGGAGTAGAAACAGTGAAGAGAA 59.989 44.000 0.00 0.00 0.00 2.87
4717 5269 7.586300 CGCCTGTTTTATATATTTGCAGTACAC 59.414 37.037 0.00 0.00 0.00 2.90
4784 5339 1.788258 CATTCTCACTCAGTGCGTGT 58.212 50.000 12.73 0.00 32.98 4.49
4786 5341 2.309528 TTCTCACTCAGTGCGTGTTT 57.690 45.000 12.73 0.00 32.98 2.83
5050 5869 7.713942 CAGCAGATAAGCCATATGATATAAGCA 59.286 37.037 3.65 0.00 34.23 3.91
5084 5903 1.923356 CCTAGCCAAACAACACCCAT 58.077 50.000 0.00 0.00 0.00 4.00
5099 5918 5.112129 ACACCCATATAGTGTTCCCTTTC 57.888 43.478 5.15 0.00 46.07 2.62
5106 5925 6.782988 CCATATAGTGTTCCCTTTCTCCTCTA 59.217 42.308 0.00 0.00 0.00 2.43
5107 5926 7.456269 CCATATAGTGTTCCCTTTCTCCTCTAT 59.544 40.741 0.00 0.00 0.00 1.98
5108 5927 9.535170 CATATAGTGTTCCCTTTCTCCTCTATA 57.465 37.037 0.00 0.00 0.00 1.31
5110 5929 8.855804 ATAGTGTTCCCTTTCTCCTCTATAAA 57.144 34.615 0.00 0.00 0.00 1.40
5164 5983 3.796504 GCAAAGCACAAACAGCTACATGT 60.797 43.478 2.69 2.69 42.53 3.21
5173 5992 2.693069 ACAGCTACATGTGCAAGAGTC 58.307 47.619 9.11 0.00 30.46 3.36
5195 6014 5.354234 GTCGAGAATTGGAGAATTTTAGGCA 59.646 40.000 0.00 0.00 31.58 4.75
5240 6059 3.621794 GCTTGAATAAATAGCGGCACAG 58.378 45.455 1.45 0.00 0.00 3.66
5300 6119 3.431068 GGAGGCTGGAACTAAGCTTCTAC 60.431 52.174 0.00 0.00 44.00 2.59
5329 6148 6.696441 TTTACTTTAAGCTTTCCACGGAAA 57.304 33.333 3.20 10.72 41.22 3.13
5373 6192 3.383761 CCAAAATGGCTGACTGTTCAAC 58.616 45.455 0.00 0.00 0.00 3.18
5416 6235 1.134521 CCCGCCAGAGTTATAAGCACA 60.135 52.381 0.00 0.00 0.00 4.57
5462 6281 0.726827 GCTCAAAACCATGATCGCGA 59.273 50.000 13.09 13.09 0.00 5.87
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 9.730705 CAGGTGGTATCTGTTGAATATATGATT 57.269 33.333 0.00 0.00 0.00 2.57
21 22 8.324306 CCAGGTGGTATCTGTTGAATATATGAT 58.676 37.037 0.00 0.00 0.00 2.45
22 23 7.256655 CCCAGGTGGTATCTGTTGAATATATGA 60.257 40.741 0.00 0.00 0.00 2.15
23 24 6.881065 CCCAGGTGGTATCTGTTGAATATATG 59.119 42.308 0.00 0.00 0.00 1.78
24 25 6.792473 TCCCAGGTGGTATCTGTTGAATATAT 59.208 38.462 0.00 0.00 34.77 0.86
25 26 6.147473 TCCCAGGTGGTATCTGTTGAATATA 58.853 40.000 0.00 0.00 34.77 0.86
26 27 4.975147 TCCCAGGTGGTATCTGTTGAATAT 59.025 41.667 0.00 0.00 34.77 1.28
27 28 4.367166 TCCCAGGTGGTATCTGTTGAATA 58.633 43.478 0.00 0.00 34.77 1.75
28 29 3.189606 TCCCAGGTGGTATCTGTTGAAT 58.810 45.455 0.00 0.00 34.77 2.57
29 30 2.571653 CTCCCAGGTGGTATCTGTTGAA 59.428 50.000 0.00 0.00 34.77 2.69
30 31 2.187958 CTCCCAGGTGGTATCTGTTGA 58.812 52.381 0.00 0.00 34.77 3.18
31 32 1.210478 CCTCCCAGGTGGTATCTGTTG 59.790 57.143 0.00 0.00 34.77 3.33
32 33 1.584724 CCTCCCAGGTGGTATCTGTT 58.415 55.000 0.00 0.00 34.77 3.16
33 34 0.326618 CCCTCCCAGGTGGTATCTGT 60.327 60.000 4.18 0.00 31.93 3.41
34 35 1.700042 GCCCTCCCAGGTGGTATCTG 61.700 65.000 4.18 0.00 31.93 2.90
35 36 1.384643 GCCCTCCCAGGTGGTATCT 60.385 63.158 4.18 0.00 31.93 1.98
191 205 0.679505 ACACGCCTCAAGTTCAGCTA 59.320 50.000 0.00 0.00 0.00 3.32
255 286 1.822506 AAGAGTCCATCTCGACGACA 58.177 50.000 0.00 0.00 46.86 4.35
277 308 2.601367 GCACATGGCCACCACCTT 60.601 61.111 8.16 0.00 35.80 3.50
326 357 1.831106 TGATATCCTGCACGAGGTTGT 59.169 47.619 0.00 0.00 43.37 3.32
361 392 2.125633 GACCTTCCGTCCCTTCGC 60.126 66.667 0.00 0.00 35.23 4.70
401 434 8.777413 CAAGTTCATGACTCACTTTATTCTGAA 58.223 33.333 8.28 0.00 37.72 3.02
449 482 5.801531 ATGAAACCATATAGCAGTACGGA 57.198 39.130 0.00 0.00 0.00 4.69
598 635 0.033504 TCGACCTTGCAAGTCCACTC 59.966 55.000 24.35 9.76 0.00 3.51
599 636 0.468226 TTCGACCTTGCAAGTCCACT 59.532 50.000 24.35 1.90 0.00 4.00
600 637 0.586802 GTTCGACCTTGCAAGTCCAC 59.413 55.000 24.35 14.78 0.00 4.02
601 638 0.878523 CGTTCGACCTTGCAAGTCCA 60.879 55.000 24.35 8.67 0.00 4.02
603 640 1.070776 GTTCGTTCGACCTTGCAAGTC 60.071 52.381 24.35 19.02 0.00 3.01
604 641 0.935196 GTTCGTTCGACCTTGCAAGT 59.065 50.000 24.35 12.86 0.00 3.16
605 642 1.217882 AGTTCGTTCGACCTTGCAAG 58.782 50.000 19.93 19.93 0.00 4.01
606 643 1.329292 CAAGTTCGTTCGACCTTGCAA 59.671 47.619 16.54 0.00 30.33 4.08
607 644 0.934496 CAAGTTCGTTCGACCTTGCA 59.066 50.000 16.54 0.00 30.33 4.08
608 645 1.192534 CTCAAGTTCGTTCGACCTTGC 59.807 52.381 21.43 1.41 35.53 4.01
626 663 6.096141 TGTCACAGAGAAGGAGAATGATACTC 59.904 42.308 0.00 0.00 0.00 2.59
659 696 4.076394 TGGAAAAATTTAGACCGGACCAG 58.924 43.478 9.46 0.00 0.00 4.00
661 698 4.763279 TCTTGGAAAAATTTAGACCGGACC 59.237 41.667 9.46 0.00 0.00 4.46
678 715 6.457355 CATGTGATTCATTTGGTTTCTTGGA 58.543 36.000 0.00 0.00 34.09 3.53
716 758 1.222113 GCTTTTCTCCTCCCCTCCG 59.778 63.158 0.00 0.00 0.00 4.63
717 759 0.916845 AGGCTTTTCTCCTCCCCTCC 60.917 60.000 0.00 0.00 0.00 4.30
718 760 0.995803 AAGGCTTTTCTCCTCCCCTC 59.004 55.000 0.00 0.00 32.45 4.30
719 761 0.701147 CAAGGCTTTTCTCCTCCCCT 59.299 55.000 0.00 0.00 32.45 4.79
720 762 0.405973 ACAAGGCTTTTCTCCTCCCC 59.594 55.000 0.00 0.00 32.45 4.81
721 763 1.827681 GACAAGGCTTTTCTCCTCCC 58.172 55.000 6.15 0.00 32.45 4.30
834 881 2.932194 TTCTCTGCCTGCCTGCCT 60.932 61.111 0.00 0.00 0.00 4.75
835 882 2.438075 CTTCTCTGCCTGCCTGCC 60.438 66.667 0.00 0.00 0.00 4.85
897 952 1.853250 GCTAGGACTGGGGTTGGCTT 61.853 60.000 0.00 0.00 0.00 4.35
924 979 1.521423 GGTCTGAGTTCGTTCGTTGTG 59.479 52.381 0.00 0.00 0.00 3.33
955 1010 4.003788 AGTCCAACCGGAGCCACG 62.004 66.667 9.46 0.00 43.99 4.94
988 1043 4.227134 CCCCATCAGGAGCGTCCG 62.227 72.222 0.00 0.00 42.75 4.79
989 1044 2.367202 TTCCCCATCAGGAGCGTCC 61.367 63.158 0.00 0.00 37.20 4.79
990 1045 1.153349 GTTCCCCATCAGGAGCGTC 60.153 63.158 0.00 0.00 37.20 5.19
991 1046 1.613630 AGTTCCCCATCAGGAGCGT 60.614 57.895 0.00 0.00 41.69 5.07
1072 1127 2.184579 GGAGTAGAGTGGTGGCGC 59.815 66.667 0.00 0.00 0.00 6.53
1074 1129 2.184579 GCGGAGTAGAGTGGTGGC 59.815 66.667 0.00 0.00 0.00 5.01
1075 1130 1.668101 GAGGCGGAGTAGAGTGGTGG 61.668 65.000 0.00 0.00 0.00 4.61
1076 1131 1.810532 GAGGCGGAGTAGAGTGGTG 59.189 63.158 0.00 0.00 0.00 4.17
1077 1132 1.749638 CGAGGCGGAGTAGAGTGGT 60.750 63.158 0.00 0.00 0.00 4.16
1113 1172 1.201647 CTGGAAAGCTGATGCAACCAG 59.798 52.381 13.32 13.32 43.31 4.00
1153 1213 4.803088 CAGAGCACACAAAGCTATCTACTC 59.197 45.833 0.00 0.00 43.58 2.59
1154 1214 4.753233 CAGAGCACACAAAGCTATCTACT 58.247 43.478 0.00 0.00 43.58 2.57
1155 1215 3.308323 GCAGAGCACACAAAGCTATCTAC 59.692 47.826 0.00 0.00 43.58 2.59
1162 1222 0.950116 AGAAGCAGAGCACACAAAGC 59.050 50.000 0.00 0.00 0.00 3.51
1166 1226 0.319040 GTCGAGAAGCAGAGCACACA 60.319 55.000 0.00 0.00 0.00 3.72
1183 1243 6.071051 AGGACCAAATCACTAGAGAAGAAGTC 60.071 42.308 0.00 1.35 0.00 3.01
1189 1249 5.825593 AACAGGACCAAATCACTAGAGAA 57.174 39.130 0.00 0.00 0.00 2.87
1191 1251 6.287589 ACTAACAGGACCAAATCACTAGAG 57.712 41.667 0.00 0.00 0.00 2.43
1193 1253 9.099454 GAATAACTAACAGGACCAAATCACTAG 57.901 37.037 0.00 0.00 0.00 2.57
1194 1254 7.762615 CGAATAACTAACAGGACCAAATCACTA 59.237 37.037 0.00 0.00 0.00 2.74
1195 1255 6.594159 CGAATAACTAACAGGACCAAATCACT 59.406 38.462 0.00 0.00 0.00 3.41
1196 1256 6.183360 CCGAATAACTAACAGGACCAAATCAC 60.183 42.308 0.00 0.00 0.00 3.06
1205 1265 5.759059 TCCTACTCCGAATAACTAACAGGA 58.241 41.667 0.00 0.00 0.00 3.86
1211 1271 5.048921 CGCTCATTCCTACTCCGAATAACTA 60.049 44.000 0.00 0.00 0.00 2.24
1213 1273 3.982058 CGCTCATTCCTACTCCGAATAAC 59.018 47.826 0.00 0.00 0.00 1.89
1246 1308 2.287427 CCAAACAGTGCAGCAGAAGAAG 60.287 50.000 0.00 0.00 0.00 2.85
1441 1504 5.518128 CGCTATCTTGAAGATATCAATCCCG 59.482 44.000 14.71 3.02 46.62 5.14
1542 1627 3.026694 AGAACTCTTGCCAAAAGTGCTT 58.973 40.909 0.00 0.00 0.00 3.91
1644 1729 1.722034 TCCTTGTGGAGCTTCTCAGT 58.278 50.000 0.00 0.00 37.46 3.41
1701 1786 2.592993 CCCCTTGAAGACGGAGCCA 61.593 63.158 0.00 0.00 0.00 4.75
1710 1795 0.460284 CGTCGATCCACCCCTTGAAG 60.460 60.000 0.00 0.00 0.00 3.02
1832 1917 2.281761 AAGTGCGACAAGGCCAGG 60.282 61.111 5.01 0.00 0.00 4.45
1836 1921 1.069636 CAAGAAGAAGTGCGACAAGGC 60.070 52.381 0.00 0.00 0.00 4.35
1851 1936 1.677576 CAGCTCAAACAGGCACAAGAA 59.322 47.619 0.00 0.00 0.00 2.52
2082 2167 7.912250 GGAACATTTCTTGCACAATGAGTATAG 59.088 37.037 15.95 0.00 34.89 1.31
2086 2171 4.341806 TGGAACATTTCTTGCACAATGAGT 59.658 37.500 15.95 6.38 34.89 3.41
2126 2211 0.539438 GTCACTCACCCATTTGGCCA 60.539 55.000 0.00 0.00 37.83 5.36
2127 2212 0.539438 TGTCACTCACCCATTTGGCC 60.539 55.000 0.00 0.00 37.83 5.36
2128 2213 0.883833 CTGTCACTCACCCATTTGGC 59.116 55.000 0.00 0.00 37.83 4.52
2129 2214 1.881973 CACTGTCACTCACCCATTTGG 59.118 52.381 0.00 0.00 41.37 3.28
2130 2215 1.267806 GCACTGTCACTCACCCATTTG 59.732 52.381 0.00 0.00 0.00 2.32
2194 2279 3.335579 AGAGCAACCTTCATCCGTAAAC 58.664 45.455 0.00 0.00 0.00 2.01
2313 2398 5.888105 ACATAAGAGACTGAATTTGCATGC 58.112 37.500 11.82 11.82 0.00 4.06
2618 2703 2.821969 CAGTCAATGAAGGTCCCCTTTG 59.178 50.000 0.00 0.00 44.82 2.77
2626 2711 6.239120 CCTTTTCATGAACAGTCAATGAAGGT 60.239 38.462 18.00 0.00 37.30 3.50
2628 2713 6.154445 CCCTTTTCATGAACAGTCAATGAAG 58.846 40.000 18.00 11.01 37.30 3.02
2638 2723 4.952071 TCATTTGCCCTTTTCATGAACA 57.048 36.364 7.89 0.00 0.00 3.18
2681 2766 9.832445 GAACCACAACCATCTTAAGAAGATATA 57.168 33.333 9.71 0.00 46.20 0.86
2682 2767 8.328758 TGAACCACAACCATCTTAAGAAGATAT 58.671 33.333 9.71 0.00 46.20 1.63
2871 3070 3.513912 ACCAAGTGAATCCGACAGATACA 59.486 43.478 0.00 0.00 33.66 2.29
2902 3101 2.254546 AGCACAACGAAGAACCATGA 57.745 45.000 0.00 0.00 0.00 3.07
2962 3161 5.366477 TGATTATCTTATGCACCCTCACTGA 59.634 40.000 0.00 0.00 0.00 3.41
2979 3178 7.701445 AGTCACTTTGCTGCTAAATGATTATC 58.299 34.615 10.72 0.00 0.00 1.75
3021 3220 1.736681 GTTCAGACATGCTCTGCTTCC 59.263 52.381 16.08 4.94 45.64 3.46
3160 3360 0.323999 AGCATGATGGCTTGCCTCAA 60.324 50.000 13.18 0.00 42.71 3.02
3309 3577 9.507329 GGCAATTTATAGTGATCAGAGGAATTA 57.493 33.333 0.00 0.00 0.00 1.40
3363 3632 5.375417 TGACTTTTTACCATCACAGCATG 57.625 39.130 0.00 0.00 46.00 4.06
3364 3633 6.209192 TCATTGACTTTTTACCATCACAGCAT 59.791 34.615 0.00 0.00 0.00 3.79
3365 3634 5.534278 TCATTGACTTTTTACCATCACAGCA 59.466 36.000 0.00 0.00 0.00 4.41
3366 3635 6.012658 TCATTGACTTTTTACCATCACAGC 57.987 37.500 0.00 0.00 0.00 4.40
3367 3636 7.819644 TCATCATTGACTTTTTACCATCACAG 58.180 34.615 0.00 0.00 0.00 3.66
3368 3637 7.757941 TCATCATTGACTTTTTACCATCACA 57.242 32.000 0.00 0.00 0.00 3.58
3369 3638 9.643693 AAATCATCATTGACTTTTTACCATCAC 57.356 29.630 0.00 0.00 33.85 3.06
3374 3643 9.490663 CGAGTAAATCATCATTGACTTTTTACC 57.509 33.333 16.07 10.78 34.17 2.85
3375 3644 9.000018 GCGAGTAAATCATCATTGACTTTTTAC 58.000 33.333 13.82 13.82 34.17 2.01
3376 3645 7.902917 CGCGAGTAAATCATCATTGACTTTTTA 59.097 33.333 0.00 0.00 34.17 1.52
3377 3646 6.742718 CGCGAGTAAATCATCATTGACTTTTT 59.257 34.615 0.00 0.00 34.17 1.94
3400 3669 0.600255 AGCCACAGTCAGTTGTACGC 60.600 55.000 0.00 0.00 0.00 4.42
3415 3684 3.228453 CGGAGGGAGTATTAACTAGCCA 58.772 50.000 0.00 0.00 35.56 4.75
3416 3685 3.229293 ACGGAGGGAGTATTAACTAGCC 58.771 50.000 0.00 0.00 35.56 3.93
3441 3710 6.770746 ACTCCTCTTAGCGACAAGTAATTA 57.229 37.500 0.00 0.00 0.00 1.40
3458 3727 5.047021 TCCCGAATCATCATTGATACTCCTC 60.047 44.000 0.00 0.00 41.83 3.71
3460 3729 4.932200 GTCCCGAATCATCATTGATACTCC 59.068 45.833 0.00 0.00 41.83 3.85
3461 3730 5.541845 TGTCCCGAATCATCATTGATACTC 58.458 41.667 0.00 0.00 41.83 2.59
3462 3731 5.305386 TCTGTCCCGAATCATCATTGATACT 59.695 40.000 0.00 0.00 41.83 2.12
3463 3732 5.541845 TCTGTCCCGAATCATCATTGATAC 58.458 41.667 0.00 0.00 41.83 2.24
3471 3740 6.375736 TGATACTATCTCTGTCCCGAATCATC 59.624 42.308 0.00 0.00 0.00 2.92
3478 3747 5.966742 TCATTGATACTATCTCTGTCCCG 57.033 43.478 0.00 0.00 0.00 5.14
3488 3757 9.074576 ACACATGCAAATCATCATTGATACTAT 57.925 29.630 0.00 0.00 41.83 2.12
3503 3772 6.183360 CCAAGATGAGTCATACACATGCAAAT 60.183 38.462 5.38 0.00 29.65 2.32
3536 3805 9.618890 ACATTAGTGCATTGAAGATGTAACTAT 57.381 29.630 0.00 0.00 0.00 2.12
3537 3806 9.098355 GACATTAGTGCATTGAAGATGTAACTA 57.902 33.333 0.00 0.00 0.00 2.24
3561 4108 4.214437 CAAGAAAGAATTCGTGTGCTGAC 58.786 43.478 0.00 0.00 39.34 3.51
3605 4152 9.237846 ACGTAGTGTTAAGTGTTTAACTAAGAC 57.762 33.333 10.45 0.00 45.71 3.01
3630 4177 4.918810 AACTTGAATGTGGAACCAAGAC 57.081 40.909 0.00 0.00 36.23 3.01
3685 4232 5.878406 ATCGGATTAGAGAACAAGATGGT 57.122 39.130 0.00 0.00 0.00 3.55
3724 4272 9.825972 CATACAAATCGTCATTGACTTTTTACT 57.174 29.630 14.54 5.88 0.00 2.24
3770 4318 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
3771 4319 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
3772 4320 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
3773 4321 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
3774 4322 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
3775 4323 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
3776 4324 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
3777 4325 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
3778 4326 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
3791 4339 9.354673 ACCATTTGAAATCTCTAGAAAGACAAA 57.645 29.630 0.00 4.41 0.00 2.83
3792 4340 8.924511 ACCATTTGAAATCTCTAGAAAGACAA 57.075 30.769 0.00 0.00 0.00 3.18
3793 4341 8.156820 TGACCATTTGAAATCTCTAGAAAGACA 58.843 33.333 0.00 0.00 0.00 3.41
3794 4342 8.447053 GTGACCATTTGAAATCTCTAGAAAGAC 58.553 37.037 0.00 0.00 0.00 3.01
3795 4343 7.607991 GGTGACCATTTGAAATCTCTAGAAAGA 59.392 37.037 0.00 0.00 0.00 2.52
3796 4344 7.391554 TGGTGACCATTTGAAATCTCTAGAAAG 59.608 37.037 0.00 0.00 0.00 2.62
3797 4345 7.174946 GTGGTGACCATTTGAAATCTCTAGAAA 59.825 37.037 7.94 0.00 35.28 2.52
3798 4346 6.655003 GTGGTGACCATTTGAAATCTCTAGAA 59.345 38.462 7.94 0.00 35.28 2.10
3799 4347 6.173339 GTGGTGACCATTTGAAATCTCTAGA 58.827 40.000 7.94 0.00 35.28 2.43
3800 4348 5.939883 TGTGGTGACCATTTGAAATCTCTAG 59.060 40.000 7.94 0.00 35.28 2.43
3801 4349 5.875224 TGTGGTGACCATTTGAAATCTCTA 58.125 37.500 7.94 0.00 35.28 2.43
3802 4350 4.728772 TGTGGTGACCATTTGAAATCTCT 58.271 39.130 7.94 0.00 35.28 3.10
3803 4351 5.649782 ATGTGGTGACCATTTGAAATCTC 57.350 39.130 7.94 0.00 35.28 2.75
3804 4352 5.123820 CGTATGTGGTGACCATTTGAAATCT 59.876 40.000 7.94 0.00 35.28 2.40
3805 4353 5.331902 CGTATGTGGTGACCATTTGAAATC 58.668 41.667 7.94 0.00 35.28 2.17
3806 4354 4.157656 CCGTATGTGGTGACCATTTGAAAT 59.842 41.667 7.94 0.00 35.28 2.17
3807 4355 3.504134 CCGTATGTGGTGACCATTTGAAA 59.496 43.478 7.94 0.00 35.28 2.69
3808 4356 3.078097 CCGTATGTGGTGACCATTTGAA 58.922 45.455 7.94 0.00 35.28 2.69
3809 4357 2.303311 TCCGTATGTGGTGACCATTTGA 59.697 45.455 7.94 0.00 35.28 2.69
3810 4358 2.705730 TCCGTATGTGGTGACCATTTG 58.294 47.619 7.94 0.00 35.28 2.32
3811 4359 3.278574 CATCCGTATGTGGTGACCATTT 58.721 45.455 7.94 0.45 35.28 2.32
3812 4360 2.238646 ACATCCGTATGTGGTGACCATT 59.761 45.455 7.94 0.86 44.79 3.16
3813 4361 1.837439 ACATCCGTATGTGGTGACCAT 59.163 47.619 7.94 0.00 44.79 3.55
3814 4362 1.271856 ACATCCGTATGTGGTGACCA 58.728 50.000 0.00 0.00 44.79 4.02
3815 4363 3.746045 ATACATCCGTATGTGGTGACC 57.254 47.619 3.56 0.00 45.99 4.02
3816 4364 7.094506 TGTCTATATACATCCGTATGTGGTGAC 60.095 40.741 3.56 5.93 45.99 3.67
3817 4365 6.943718 TGTCTATATACATCCGTATGTGGTGA 59.056 38.462 3.56 0.00 45.99 4.02
3818 4366 7.153217 TGTCTATATACATCCGTATGTGGTG 57.847 40.000 3.56 0.00 45.99 4.17
3819 4367 7.956328 ATGTCTATATACATCCGTATGTGGT 57.044 36.000 3.56 0.00 45.99 4.16
3846 4394 8.604035 GCGAAATGAGTGAATCTATACTTCAAA 58.396 33.333 0.00 0.00 34.59 2.69
3847 4395 7.981789 AGCGAAATGAGTGAATCTATACTTCAA 59.018 33.333 0.00 0.00 34.59 2.69
3848 4396 7.492524 AGCGAAATGAGTGAATCTATACTTCA 58.507 34.615 0.00 0.00 0.00 3.02
3849 4397 7.115663 GGAGCGAAATGAGTGAATCTATACTTC 59.884 40.741 0.00 0.00 0.00 3.01
3850 4398 6.926272 GGAGCGAAATGAGTGAATCTATACTT 59.074 38.462 0.00 0.00 0.00 2.24
3851 4399 6.451393 GGAGCGAAATGAGTGAATCTATACT 58.549 40.000 0.00 0.00 0.00 2.12
3852 4400 5.343593 CGGAGCGAAATGAGTGAATCTATAC 59.656 44.000 0.00 0.00 0.00 1.47
3853 4401 5.009710 ACGGAGCGAAATGAGTGAATCTATA 59.990 40.000 0.00 0.00 0.00 1.31
3854 4402 4.202161 ACGGAGCGAAATGAGTGAATCTAT 60.202 41.667 0.00 0.00 0.00 1.98
3855 4403 3.130516 ACGGAGCGAAATGAGTGAATCTA 59.869 43.478 0.00 0.00 0.00 1.98
3856 4404 2.093973 ACGGAGCGAAATGAGTGAATCT 60.094 45.455 0.00 0.00 0.00 2.40
3857 4405 2.271800 ACGGAGCGAAATGAGTGAATC 58.728 47.619 0.00 0.00 0.00 2.52
3858 4406 2.386661 ACGGAGCGAAATGAGTGAAT 57.613 45.000 0.00 0.00 0.00 2.57
3859 4407 3.186909 CATACGGAGCGAAATGAGTGAA 58.813 45.455 0.00 0.00 0.00 3.18
3860 4408 2.165641 ACATACGGAGCGAAATGAGTGA 59.834 45.455 0.00 0.00 31.99 3.41
3861 4409 2.540515 ACATACGGAGCGAAATGAGTG 58.459 47.619 0.00 0.00 31.99 3.51
3862 4410 2.961526 ACATACGGAGCGAAATGAGT 57.038 45.000 0.00 0.00 31.99 3.41
3863 4411 3.966154 ACTACATACGGAGCGAAATGAG 58.034 45.455 0.00 0.00 31.99 2.90
3864 4412 3.379057 TGACTACATACGGAGCGAAATGA 59.621 43.478 0.00 0.00 31.99 2.57
3865 4413 3.702330 TGACTACATACGGAGCGAAATG 58.298 45.455 0.00 0.00 33.06 2.32
3866 4414 4.037565 TGATGACTACATACGGAGCGAAAT 59.962 41.667 0.00 0.00 36.82 2.17
3867 4415 3.379057 TGATGACTACATACGGAGCGAAA 59.621 43.478 0.00 0.00 36.82 3.46
3868 4416 2.946990 TGATGACTACATACGGAGCGAA 59.053 45.455 0.00 0.00 36.82 4.70
3869 4417 2.567985 TGATGACTACATACGGAGCGA 58.432 47.619 0.00 0.00 36.82 4.93
3870 4418 3.560902 ATGATGACTACATACGGAGCG 57.439 47.619 0.00 0.00 36.82 5.03
3871 4419 7.709269 TTTAAATGATGACTACATACGGAGC 57.291 36.000 0.00 0.00 36.82 4.70
3872 4420 8.548721 GGTTTTAAATGATGACTACATACGGAG 58.451 37.037 0.00 0.00 36.82 4.63
3873 4421 8.262227 AGGTTTTAAATGATGACTACATACGGA 58.738 33.333 0.00 0.00 36.82 4.69
3874 4422 8.433421 AGGTTTTAAATGATGACTACATACGG 57.567 34.615 0.00 0.00 36.82 4.02
3875 4423 9.314321 AGAGGTTTTAAATGATGACTACATACG 57.686 33.333 0.00 0.00 36.82 3.06
3902 4450 8.520351 CCTCCGTTCCTAAATATTTGTCTTTTT 58.480 33.333 11.05 0.00 0.00 1.94
3903 4451 7.122204 CCCTCCGTTCCTAAATATTTGTCTTTT 59.878 37.037 11.05 0.00 0.00 2.27
3904 4452 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
3905 4453 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
3906 4454 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
3907 4455 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
3908 4456 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
3909 4457 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
3910 4458 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
3911 4459 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
3912 4460 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
3913 4461 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
3914 4462 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
3915 4463 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
3916 4464 3.011032 AGAACTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 37.15 2.69
3917 4465 2.579860 AGAACTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 37.15 2.94
3918 4466 1.358445 AGAACTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 37.15 3.36
3919 4467 1.750206 GAGAACTACTCCCTCCGTTCC 59.250 57.143 0.00 0.00 39.53 3.62
3920 4468 2.444421 TGAGAACTACTCCCTCCGTTC 58.556 52.381 0.00 0.00 44.34 3.95
3921 4469 2.599408 TGAGAACTACTCCCTCCGTT 57.401 50.000 0.00 0.00 44.34 4.44
3922 4470 2.599408 TTGAGAACTACTCCCTCCGT 57.401 50.000 0.00 0.00 44.34 4.69
3923 4471 3.024547 TCATTGAGAACTACTCCCTCCG 58.975 50.000 0.00 0.00 44.34 4.63
3924 4472 4.651503 TCATCATTGAGAACTACTCCCTCC 59.348 45.833 0.00 0.00 44.34 4.30
3925 4473 5.860941 TCATCATTGAGAACTACTCCCTC 57.139 43.478 0.00 0.00 44.34 4.30
3926 4474 6.821616 AATCATCATTGAGAACTACTCCCT 57.178 37.500 0.00 0.00 44.34 4.20
3927 4475 6.238593 GCAAATCATCATTGAGAACTACTCCC 60.239 42.308 0.00 0.00 44.34 4.30
3928 4476 6.317140 TGCAAATCATCATTGAGAACTACTCC 59.683 38.462 0.00 0.00 44.34 3.85
3929 4477 7.312657 TGCAAATCATCATTGAGAACTACTC 57.687 36.000 0.00 0.00 45.11 2.59
3930 4478 7.338703 ACATGCAAATCATCATTGAGAACTACT 59.661 33.333 0.00 0.00 34.73 2.57
3931 4479 7.431376 CACATGCAAATCATCATTGAGAACTAC 59.569 37.037 0.00 0.00 34.73 2.73
3962 4510 9.953565 TGTAACTATTAACTAGCCAAAATCAGT 57.046 29.630 0.00 0.00 0.00 3.41
3989 4537 2.286067 GCTTACATGAGTGCATCGAAGC 60.286 50.000 5.52 5.52 39.82 3.86
4115 4663 5.547465 TCATGTAAGTTTGTACCAGTCAGG 58.453 41.667 0.00 0.00 45.67 3.86
4143 4691 4.784838 AGTGGCCTGCATATAATATGGAGA 59.215 41.667 3.32 0.00 39.43 3.71
4231 4779 1.004440 GCGGTTCTTGTCCAGAGCT 60.004 57.895 0.00 0.00 33.26 4.09
4390 4938 2.690778 GGCGTCCATTGACAGGCAC 61.691 63.158 9.26 0.00 41.85 5.01
4486 5034 1.077265 CATGGAACCCAGCAACCCT 59.923 57.895 0.00 0.00 36.75 4.34
4487 5035 1.228862 ACATGGAACCCAGCAACCC 60.229 57.895 0.00 0.00 36.75 4.11
4490 5038 1.423541 AGTACACATGGAACCCAGCAA 59.576 47.619 0.00 0.00 36.75 3.91
4492 5040 1.679032 GGAGTACACATGGAACCCAGC 60.679 57.143 0.00 0.00 36.75 4.85
4493 5041 1.909302 AGGAGTACACATGGAACCCAG 59.091 52.381 0.00 0.00 36.75 4.45
4494 5042 2.038863 AGGAGTACACATGGAACCCA 57.961 50.000 0.00 0.00 38.19 4.51
4495 5043 3.434940 AAAGGAGTACACATGGAACCC 57.565 47.619 0.00 0.00 0.00 4.11
4580 5132 2.203938 TTCCCCTCAAGTCCGGCT 60.204 61.111 0.00 0.00 0.00 5.52
4664 5216 3.065371 GCTGACAGCAAAGTAACAACAGT 59.935 43.478 22.62 0.00 41.89 3.55
4666 5218 2.357637 GGCTGACAGCAAAGTAACAACA 59.642 45.455 27.87 0.00 44.75 3.33
4667 5219 2.618709 AGGCTGACAGCAAAGTAACAAC 59.381 45.455 27.87 7.29 44.75 3.32
4668 5220 2.618241 CAGGCTGACAGCAAAGTAACAA 59.382 45.455 27.87 0.00 44.75 2.83
4717 5269 3.120041 CCAACTTGTTTTACAAAGCCGG 58.880 45.455 0.00 0.00 37.69 6.13
4784 5339 3.198417 TCTGACATGGCTCTCAGCATAAA 59.802 43.478 0.00 0.00 44.75 1.40
4786 5341 2.364647 CTCTGACATGGCTCTCAGCATA 59.635 50.000 0.00 0.00 44.75 3.14
4968 5786 7.288810 TCAAAGCAATGTGAATACTCCTTTT 57.711 32.000 0.00 0.00 0.00 2.27
4969 5787 6.899393 TCAAAGCAATGTGAATACTCCTTT 57.101 33.333 0.00 0.00 0.00 3.11
5050 5869 3.011257 TGGCTAGGCTTTGGGTTTCTATT 59.989 43.478 18.18 0.00 0.00 1.73
5084 5903 9.947189 TTTATAGAGGAGAAAGGGAACACTATA 57.053 33.333 0.00 0.00 0.00 1.31
5106 5925 8.303876 AGTGTTGCTTTGGATTCGTAATTTTAT 58.696 29.630 0.00 0.00 0.00 1.40
5107 5926 7.593273 CAGTGTTGCTTTGGATTCGTAATTTTA 59.407 33.333 0.00 0.00 0.00 1.52
5108 5927 6.420604 CAGTGTTGCTTTGGATTCGTAATTTT 59.579 34.615 0.00 0.00 0.00 1.82
5109 5928 5.920273 CAGTGTTGCTTTGGATTCGTAATTT 59.080 36.000 0.00 0.00 0.00 1.82
5110 5929 5.460646 CAGTGTTGCTTTGGATTCGTAATT 58.539 37.500 0.00 0.00 0.00 1.40
5164 5983 2.562738 TCTCCAATTCTCGACTCTTGCA 59.437 45.455 0.00 0.00 0.00 4.08
5173 5992 5.220931 CCTGCCTAAAATTCTCCAATTCTCG 60.221 44.000 0.00 0.00 30.37 4.04
5195 6014 5.757320 CGATGATCATTTTCTTCAGTAGCCT 59.243 40.000 10.14 0.00 0.00 4.58
5240 6059 7.486870 ACACTTGTAAAACCTGTTTTTCGATTC 59.513 33.333 12.73 0.58 42.22 2.52
5300 6119 7.326063 CCGTGGAAAGCTTAAAGTAAATTTCTG 59.674 37.037 0.00 0.00 32.01 3.02
5329 6148 3.772025 CCTCACTTCACCTGGTCTTATCT 59.228 47.826 0.00 0.00 0.00 1.98
5373 6192 3.003068 CGCAGATTCTAAAGATGGCTTGG 59.997 47.826 0.00 0.00 33.79 3.61
5416 6235 0.916086 TCATCAATACCCTGGCGGTT 59.084 50.000 0.00 0.00 45.36 4.44
5462 6281 3.996621 CATGGTGGGGGCCAAGGT 61.997 66.667 4.39 0.00 42.48 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.