Multiple sequence alignment - TraesCS4A01G096400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G096400 chr4A 100.000 4825 0 0 1 4825 104413132 104408308 0.000000e+00 8911
1 TraesCS4A01G096400 chr4A 87.795 254 29 1 1883 2134 31396936 31397189 3.650000e-76 296
2 TraesCS4A01G096400 chr4A 86.498 237 32 0 1898 2134 533320946 533320710 1.330000e-65 261
3 TraesCS4A01G096400 chr4D 89.053 2768 153 46 2142 4800 360451486 360454212 0.000000e+00 3295
4 TraesCS4A01G096400 chr4D 87.539 1292 94 24 12 1273 360449845 360451099 0.000000e+00 1432
5 TraesCS4A01G096400 chr4D 93.214 280 16 1 1538 1814 360451103 360451382 4.500000e-110 409
6 TraesCS4A01G096400 chr4B 91.000 1500 83 25 2596 4067 445229952 445231427 0.000000e+00 1975
7 TraesCS4A01G096400 chr4B 86.569 1303 104 32 12 1273 445227692 445228964 0.000000e+00 1371
8 TraesCS4A01G096400 chr4B 95.844 409 16 1 2142 2549 445229462 445229870 0.000000e+00 660
9 TraesCS4A01G096400 chr4B 82.862 566 38 16 4278 4794 445231694 445232249 2.050000e-123 453
10 TraesCS4A01G096400 chr4B 94.203 276 16 0 1538 1813 445228972 445229247 5.770000e-114 422
11 TraesCS4A01G096400 chr4B 88.889 144 11 3 4101 4244 445231494 445231632 6.420000e-39 172
12 TraesCS4A01G096400 chr1A 77.073 977 166 43 2629 3570 481674509 481675462 1.200000e-140 510
13 TraesCS4A01G096400 chr1A 76.205 996 189 39 2627 3602 480935160 480934193 2.610000e-132 483
14 TraesCS4A01G096400 chr1D 76.360 1011 173 41 2629 3594 381019561 381020550 2.610000e-132 483
15 TraesCS4A01G096400 chr1D 76.271 1003 180 46 2627 3604 379911999 379911030 9.390000e-132 481
16 TraesCS4A01G096400 chr1D 83.630 281 42 4 1868 2146 7358727 7358449 1.330000e-65 261
17 TraesCS4A01G096400 chr1D 86.638 232 27 2 1898 2129 388622000 388622227 2.230000e-63 254
18 TraesCS4A01G096400 chr1B 76.139 1010 177 42 2629 3594 510809344 510810333 5.650000e-129 472
19 TraesCS4A01G096400 chr1B 75.474 1003 188 46 2627 3604 509902338 509901369 2.060000e-118 436
20 TraesCS4A01G096400 chr3A 74.798 988 204 37 2627 3596 608751173 608752133 2.090000e-108 403
21 TraesCS4A01G096400 chr3A 88.889 252 27 1 1898 2149 627272221 627271971 4.690000e-80 309
22 TraesCS4A01G096400 chr3A 82.996 247 42 0 2174 2420 608347931 608347685 1.750000e-54 224
23 TraesCS4A01G096400 chr3A 82.072 251 43 2 2171 2420 608750570 608750819 3.780000e-51 213
24 TraesCS4A01G096400 chr5A 91.635 263 22 0 1275 1537 49738089 49737827 9.870000e-97 364
25 TraesCS4A01G096400 chr5A 89.272 261 28 0 1275 1535 578233725 578233465 1.290000e-85 327
26 TraesCS4A01G096400 chr5A 85.366 246 36 0 1883 2128 407292395 407292640 6.200000e-64 255
27 TraesCS4A01G096400 chr5A 83.333 264 44 0 1883 2146 464193944 464193681 1.340000e-60 244
28 TraesCS4A01G096400 chr7A 91.860 258 21 0 1275 1532 599786644 599786901 1.280000e-95 361
29 TraesCS4A01G096400 chr2B 89.655 261 27 0 1275 1535 104069825 104069565 2.780000e-87 333
30 TraesCS4A01G096400 chr2B 88.593 263 29 1 1275 1536 559493554 559493292 7.790000e-83 318
31 TraesCS4A01G096400 chr2B 86.695 233 31 0 1897 2129 784711528 784711296 4.790000e-65 259
32 TraesCS4A01G096400 chr3B 73.535 990 213 37 2627 3596 618870681 618871641 1.000000e-86 331
33 TraesCS4A01G096400 chr3B 88.302 265 31 0 1272 1536 26935817 26936081 7.790000e-83 318
34 TraesCS4A01G096400 chr3B 88.302 265 31 0 1272 1536 782679639 782679903 7.790000e-83 318
35 TraesCS4A01G096400 chr3B 81.974 233 40 2 2171 2402 618869784 618870015 3.810000e-46 196
36 TraesCS4A01G096400 chr7B 88.302 265 31 0 1272 1536 273301147 273301411 7.790000e-83 318
37 TraesCS4A01G096400 chr7B 84.921 252 38 0 1882 2133 750566822 750567073 6.200000e-64 255
38 TraesCS4A01G096400 chr5B 87.778 270 33 0 1275 1544 100551541 100551272 2.800000e-82 316
39 TraesCS4A01G096400 chr3D 81.275 251 45 2 2171 2420 465509504 465509753 8.190000e-48 202


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G096400 chr4A 104408308 104413132 4824 True 8911.000000 8911 100.000000 1 4825 1 chr4A.!!$R1 4824
1 TraesCS4A01G096400 chr4D 360449845 360454212 4367 False 1712.000000 3295 89.935333 12 4800 3 chr4D.!!$F1 4788
2 TraesCS4A01G096400 chr4B 445227692 445232249 4557 False 842.166667 1975 89.894500 12 4794 6 chr4B.!!$F1 4782
3 TraesCS4A01G096400 chr1A 481674509 481675462 953 False 510.000000 510 77.073000 2629 3570 1 chr1A.!!$F1 941
4 TraesCS4A01G096400 chr1A 480934193 480935160 967 True 483.000000 483 76.205000 2627 3602 1 chr1A.!!$R1 975
5 TraesCS4A01G096400 chr1D 381019561 381020550 989 False 483.000000 483 76.360000 2629 3594 1 chr1D.!!$F1 965
6 TraesCS4A01G096400 chr1D 379911030 379911999 969 True 481.000000 481 76.271000 2627 3604 1 chr1D.!!$R2 977
7 TraesCS4A01G096400 chr1B 510809344 510810333 989 False 472.000000 472 76.139000 2629 3594 1 chr1B.!!$F1 965
8 TraesCS4A01G096400 chr1B 509901369 509902338 969 True 436.000000 436 75.474000 2627 3604 1 chr1B.!!$R1 977
9 TraesCS4A01G096400 chr3A 608750570 608752133 1563 False 308.000000 403 78.435000 2171 3596 2 chr3A.!!$F1 1425
10 TraesCS4A01G096400 chr3B 618869784 618871641 1857 False 263.500000 331 77.754500 2171 3596 2 chr3B.!!$F3 1425

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
427 448 0.169230 CTGACGAGACGACAAGGAGG 59.831 60.0 0.00 0.0 31.07 4.30 F
495 516 0.176449 CGAGCATCAGACCATGACCA 59.824 55.0 0.00 0.0 41.91 4.02 F
1297 1365 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.0 8.23 0.0 41.33 3.55 F
1538 1606 0.105039 CTGAACGGAGGGACTATGGC 59.895 60.0 0.00 0.0 41.55 4.40 F
2666 3415 0.251297 TGCAGCCAGGCAAGTTGTAT 60.251 50.0 15.80 0.0 41.65 2.29 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1519 1587 0.105039 GCCATAGTCCCTCCGTTCAG 59.895 60.0 0.00 0.00 0.00 3.02 R
1522 1590 0.263765 TAGGCCATAGTCCCTCCGTT 59.736 55.0 5.01 0.00 32.65 4.44 R
3169 3973 0.669318 GTTCATGGACGCCGAGAACA 60.669 55.0 18.81 0.00 38.70 3.18 R
3362 4166 0.319211 CCTCCACGCTCGTGTTGTAA 60.319 55.0 19.25 1.39 44.02 2.41 R
4130 5008 0.030908 GGTCCCTCTCTACGAATGCG 59.969 60.0 0.00 0.00 44.79 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 2.936498 AGTTTGTCTGACGTTCCAACTG 59.064 45.455 2.98 0.00 0.00 3.16
155 156 5.239525 AGACACCAATCTTAACTGTCTTTGC 59.760 40.000 0.00 0.00 38.75 3.68
156 157 4.887071 ACACCAATCTTAACTGTCTTTGCA 59.113 37.500 0.00 0.00 0.00 4.08
157 158 5.359576 ACACCAATCTTAACTGTCTTTGCAA 59.640 36.000 0.00 0.00 0.00 4.08
171 192 5.362430 TGTCTTTGCAATGGAACTTAAACCT 59.638 36.000 11.99 0.00 0.00 3.50
172 193 5.920840 GTCTTTGCAATGGAACTTAAACCTC 59.079 40.000 11.99 0.00 0.00 3.85
174 195 2.817258 TGCAATGGAACTTAAACCTCGG 59.183 45.455 0.00 0.00 0.00 4.63
176 197 3.254903 GCAATGGAACTTAAACCTCGGTT 59.745 43.478 0.00 0.00 40.45 4.44
177 198 4.794169 CAATGGAACTTAAACCTCGGTTG 58.206 43.478 1.44 0.00 38.47 3.77
178 199 2.223745 TGGAACTTAAACCTCGGTTGC 58.776 47.619 1.44 0.00 38.47 4.17
179 200 1.196127 GGAACTTAAACCTCGGTTGCG 59.804 52.381 1.44 0.00 38.47 4.85
180 201 1.196127 GAACTTAAACCTCGGTTGCGG 59.804 52.381 1.44 0.00 38.47 5.69
181 202 1.232621 ACTTAAACCTCGGTTGCGGC 61.233 55.000 1.44 0.00 38.47 6.53
182 203 1.918868 CTTAAACCTCGGTTGCGGCC 61.919 60.000 1.44 0.00 38.47 6.13
190 211 3.043121 GGTTGCGGCCGTCGTAAA 61.043 61.111 28.70 10.92 44.39 2.01
191 212 2.606030 GGTTGCGGCCGTCGTAAAA 61.606 57.895 28.70 9.08 44.39 1.52
192 213 1.154543 GTTGCGGCCGTCGTAAAAG 60.155 57.895 28.70 0.00 44.39 2.27
193 214 2.319096 TTGCGGCCGTCGTAAAAGG 61.319 57.895 28.70 0.00 40.30 3.11
194 215 3.493440 GCGGCCGTCGTAAAAGGG 61.493 66.667 28.70 0.00 41.72 3.95
195 216 2.262292 CGGCCGTCGTAAAAGGGA 59.738 61.111 19.50 0.00 0.00 4.20
200 221 1.444836 CCGTCGTAAAAGGGATGCAA 58.555 50.000 0.00 0.00 0.00 4.08
208 229 5.815740 TCGTAAAAGGGATGCAACTTATCTC 59.184 40.000 0.00 0.00 0.00 2.75
233 254 5.693769 TTTAGGTCCCTATATATGCAGCC 57.306 43.478 0.00 0.00 0.00 4.85
235 256 2.840651 AGGTCCCTATATATGCAGCCAC 59.159 50.000 0.00 0.00 0.00 5.01
238 259 1.656652 CCTATATATGCAGCCACGCC 58.343 55.000 0.00 0.00 0.00 5.68
275 296 1.886542 GTTGGACCCCATGAAGAACAC 59.113 52.381 0.00 0.00 31.53 3.32
282 303 1.888512 CCCATGAAGAACACAACCCTG 59.111 52.381 0.00 0.00 0.00 4.45
311 332 2.504367 AGTGTTCCAATCCCAGTTTCG 58.496 47.619 0.00 0.00 0.00 3.46
343 364 3.126514 CCATGCACAGTGATGAAACTCTC 59.873 47.826 4.15 0.00 0.00 3.20
389 410 3.881688 CCAATCATCTCCACATTGTCCTC 59.118 47.826 0.00 0.00 0.00 3.71
390 411 4.520179 CAATCATCTCCACATTGTCCTCA 58.480 43.478 0.00 0.00 0.00 3.86
391 412 4.849813 ATCATCTCCACATTGTCCTCAA 57.150 40.909 0.00 0.00 37.98 3.02
392 413 3.942829 TCATCTCCACATTGTCCTCAAC 58.057 45.455 0.00 0.00 36.33 3.18
402 423 0.249868 TGTCCTCAACAAGGTCGCTG 60.250 55.000 0.00 0.00 46.32 5.18
417 438 1.340657 CGCTGCTGAACTGACGAGAC 61.341 60.000 0.00 0.00 0.00 3.36
427 448 0.169230 CTGACGAGACGACAAGGAGG 59.831 60.000 0.00 0.00 31.07 4.30
454 475 1.133790 CAAATGCTAGCTGTCAAGGCC 59.866 52.381 17.23 0.00 0.00 5.19
492 513 0.904649 AACCGAGCATCAGACCATGA 59.095 50.000 0.00 0.00 43.70 3.07
493 514 0.176680 ACCGAGCATCAGACCATGAC 59.823 55.000 0.00 0.00 41.91 3.06
494 515 0.531532 CCGAGCATCAGACCATGACC 60.532 60.000 0.00 0.00 41.91 4.02
495 516 0.176449 CGAGCATCAGACCATGACCA 59.824 55.000 0.00 0.00 41.91 4.02
496 517 1.202615 CGAGCATCAGACCATGACCAT 60.203 52.381 0.00 0.00 41.91 3.55
497 518 2.036346 CGAGCATCAGACCATGACCATA 59.964 50.000 0.00 0.00 41.91 2.74
524 550 1.741401 CGGCAGATTCCAGTCGCAA 60.741 57.895 0.00 0.00 0.00 4.85
526 552 1.098050 GGCAGATTCCAGTCGCAAAT 58.902 50.000 0.00 0.00 0.00 2.32
539 565 2.780014 GTCGCAAATTTCGCATCATGAG 59.220 45.455 0.09 0.00 0.00 2.90
542 568 3.111098 GCAAATTTCGCATCATGAGTCC 58.889 45.455 0.09 0.00 0.00 3.85
663 708 2.029918 CCCTTTGCCTGCACTCTAAAAC 60.030 50.000 0.00 0.00 0.00 2.43
721 777 2.057137 AAAAGCACTGGCAACTCTCA 57.943 45.000 0.00 0.00 44.61 3.27
723 779 1.531423 AAGCACTGGCAACTCTCATG 58.469 50.000 0.00 0.00 44.61 3.07
731 787 0.718343 GCAACTCTCATGTCTCGTGC 59.282 55.000 0.00 0.00 0.00 5.34
744 800 2.202932 CGTGCCATCTTCCTCCCG 60.203 66.667 0.00 0.00 0.00 5.14
746 802 1.144936 GTGCCATCTTCCTCCCGAG 59.855 63.158 0.00 0.00 0.00 4.63
789 845 1.815003 CGGAAAAAGCTTGGCTGATCT 59.185 47.619 0.00 0.00 39.62 2.75
818 874 5.523916 CACCTAACACTTCTCATATTTCCCG 59.476 44.000 0.00 0.00 0.00 5.14
825 881 4.225267 ACTTCTCATATTTCCCGTCACCTT 59.775 41.667 0.00 0.00 0.00 3.50
920 976 9.480861 CCTCCATATATAACCTGTTCTCTCATA 57.519 37.037 0.00 0.00 0.00 2.15
970 1028 1.321016 CATTTGCGAAACGTCTGCAG 58.679 50.000 7.63 7.63 35.65 4.41
984 1042 3.357504 TGCAGTGCAGATCGATCAG 57.642 52.632 26.47 19.87 33.32 2.90
997 1055 1.522569 GATCAGAGGGTTGGGACGG 59.477 63.158 0.00 0.00 0.00 4.79
1114 1172 3.980775 GCGTACTGTGTTCATGCATTTTT 59.019 39.130 0.00 0.00 0.00 1.94
1138 1197 8.432110 TTTTTCTTCCTCCTTGTTTTATTTGC 57.568 30.769 0.00 0.00 0.00 3.68
1145 1204 6.951198 TCCTCCTTGTTTTATTTGCTTATGGA 59.049 34.615 0.00 0.00 0.00 3.41
1162 1222 3.189618 TGGAGTTATGCTGCATCTCAG 57.810 47.619 24.19 0.00 40.73 3.35
1186 1246 0.453950 GATGTCAAGCAAGCGCACAG 60.454 55.000 11.47 0.00 42.27 3.66
1187 1247 0.886043 ATGTCAAGCAAGCGCACAGA 60.886 50.000 11.47 0.00 42.27 3.41
1189 1249 0.239347 GTCAAGCAAGCGCACAGATT 59.761 50.000 11.47 0.00 42.27 2.40
1190 1250 1.464608 GTCAAGCAAGCGCACAGATTA 59.535 47.619 11.47 0.00 42.27 1.75
1257 1321 1.754226 TGAGACCATGCTGCGTGTATA 59.246 47.619 19.58 0.13 0.00 1.47
1258 1322 2.365293 TGAGACCATGCTGCGTGTATAT 59.635 45.455 19.58 5.73 0.00 0.86
1273 1341 5.741425 CGTGTATATTTGTTCTGGCAGATG 58.259 41.667 19.50 0.00 0.00 2.90
1275 1343 5.297776 GTGTATATTTGTTCTGGCAGATGCT 59.702 40.000 19.50 4.57 41.70 3.79
1276 1344 5.528690 TGTATATTTGTTCTGGCAGATGCTC 59.471 40.000 19.50 9.86 41.70 4.26
1280 1348 0.463474 GTTCTGGCAGATGCTCCCTC 60.463 60.000 19.50 0.00 41.70 4.30
1281 1349 1.630126 TTCTGGCAGATGCTCCCTCC 61.630 60.000 19.50 0.00 41.70 4.30
1282 1350 3.457625 CTGGCAGATGCTCCCTCCG 62.458 68.421 9.42 0.00 41.70 4.63
1283 1351 3.474570 GGCAGATGCTCCCTCCGT 61.475 66.667 4.59 0.00 41.70 4.69
1284 1352 2.107953 GCAGATGCTCCCTCCGTC 59.892 66.667 0.00 0.00 38.21 4.79
1285 1353 2.818132 CAGATGCTCCCTCCGTCC 59.182 66.667 0.00 0.00 0.00 4.79
1286 1354 2.835431 AGATGCTCCCTCCGTCCG 60.835 66.667 0.00 0.00 0.00 4.79
1287 1355 4.593864 GATGCTCCCTCCGTCCGC 62.594 72.222 0.00 0.00 0.00 5.54
1291 1359 3.528370 CTCCCTCCGTCCGCGAAT 61.528 66.667 8.23 0.00 41.33 3.34
1292 1360 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
1293 1361 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
1294 1362 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
1295 1363 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
1296 1364 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
1297 1365 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
1298 1366 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
1299 1367 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
1300 1368 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
1301 1369 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
1302 1370 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
1303 1371 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
1304 1372 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
1305 1373 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
1306 1374 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
1307 1375 4.537965 CGCGAATAAGTGTACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
1308 1376 4.976731 CGCGAATAAGTGTACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
1309 1377 5.459107 CGCGAATAAGTGTACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
1310 1378 6.019801 CGCGAATAAGTGTACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
1311 1379 7.338462 GCGAATAAGTGTACATCTAGCTTTTC 58.662 38.462 0.00 4.12 0.00 2.29
1312 1380 7.222999 GCGAATAAGTGTACATCTAGCTTTTCT 59.777 37.037 0.00 0.00 0.00 2.52
1313 1381 8.747666 CGAATAAGTGTACATCTAGCTTTTCTC 58.252 37.037 0.00 0.00 0.00 2.87
1314 1382 8.950208 AATAAGTGTACATCTAGCTTTTCTCC 57.050 34.615 0.00 0.00 0.00 3.71
1315 1383 6.613153 AAGTGTACATCTAGCTTTTCTCCT 57.387 37.500 0.00 0.00 0.00 3.69
1316 1384 7.719871 AAGTGTACATCTAGCTTTTCTCCTA 57.280 36.000 0.00 0.00 0.00 2.94
1317 1385 7.719871 AGTGTACATCTAGCTTTTCTCCTAA 57.280 36.000 0.00 0.00 0.00 2.69
1318 1386 7.777095 AGTGTACATCTAGCTTTTCTCCTAAG 58.223 38.462 0.00 0.00 0.00 2.18
1319 1387 7.397761 AGTGTACATCTAGCTTTTCTCCTAAGT 59.602 37.037 0.00 0.00 0.00 2.24
1320 1388 7.703197 GTGTACATCTAGCTTTTCTCCTAAGTC 59.297 40.741 0.00 0.00 0.00 3.01
1321 1389 6.859112 ACATCTAGCTTTTCTCCTAAGTCA 57.141 37.500 0.00 0.00 0.00 3.41
1322 1390 7.246171 ACATCTAGCTTTTCTCCTAAGTCAA 57.754 36.000 0.00 0.00 0.00 3.18
1323 1391 7.680730 ACATCTAGCTTTTCTCCTAAGTCAAA 58.319 34.615 0.00 0.00 0.00 2.69
1324 1392 7.821846 ACATCTAGCTTTTCTCCTAAGTCAAAG 59.178 37.037 0.00 0.00 31.97 2.77
1325 1393 7.304497 TCTAGCTTTTCTCCTAAGTCAAAGT 57.696 36.000 0.00 0.00 31.69 2.66
1326 1394 7.736893 TCTAGCTTTTCTCCTAAGTCAAAGTT 58.263 34.615 0.00 0.00 31.69 2.66
1327 1395 8.211629 TCTAGCTTTTCTCCTAAGTCAAAGTTT 58.788 33.333 0.00 0.00 31.69 2.66
1328 1396 7.646548 AGCTTTTCTCCTAAGTCAAAGTTTT 57.353 32.000 0.00 0.00 31.69 2.43
1329 1397 8.747538 AGCTTTTCTCCTAAGTCAAAGTTTTA 57.252 30.769 0.00 0.00 31.69 1.52
1330 1398 9.185680 AGCTTTTCTCCTAAGTCAAAGTTTTAA 57.814 29.630 0.00 0.00 31.69 1.52
1331 1399 9.797556 GCTTTTCTCCTAAGTCAAAGTTTTAAA 57.202 29.630 0.00 0.00 31.69 1.52
1376 1444 5.603170 AAAATAGCAGCATTTATGGCACT 57.397 34.783 0.00 0.00 0.00 4.40
1377 1445 6.713762 AAAATAGCAGCATTTATGGCACTA 57.286 33.333 0.00 0.00 0.00 2.74
1378 1446 6.713762 AAATAGCAGCATTTATGGCACTAA 57.286 33.333 0.00 0.00 0.00 2.24
1379 1447 6.713762 AATAGCAGCATTTATGGCACTAAA 57.286 33.333 0.00 0.00 0.00 1.85
1380 1448 6.713762 ATAGCAGCATTTATGGCACTAAAA 57.286 33.333 0.00 0.00 0.00 1.52
1381 1449 5.603170 AGCAGCATTTATGGCACTAAAAT 57.397 34.783 0.00 0.00 0.00 1.82
1382 1450 6.713762 AGCAGCATTTATGGCACTAAAATA 57.286 33.333 0.00 0.00 0.00 1.40
1383 1451 6.742109 AGCAGCATTTATGGCACTAAAATAG 58.258 36.000 0.00 0.00 0.00 1.73
1384 1452 6.322201 AGCAGCATTTATGGCACTAAAATAGT 59.678 34.615 0.00 0.00 40.28 2.12
1385 1453 7.502226 AGCAGCATTTATGGCACTAAAATAGTA 59.498 33.333 0.00 0.00 37.23 1.82
1386 1454 8.299570 GCAGCATTTATGGCACTAAAATAGTAT 58.700 33.333 0.00 0.00 37.23 2.12
1387 1455 9.831737 CAGCATTTATGGCACTAAAATAGTATC 57.168 33.333 0.00 0.00 37.23 2.24
1388 1456 9.573166 AGCATTTATGGCACTAAAATAGTATCA 57.427 29.630 0.00 0.00 37.23 2.15
1389 1457 9.612620 GCATTTATGGCACTAAAATAGTATCAC 57.387 33.333 0.00 0.00 37.23 3.06
1393 1461 9.706691 TTATGGCACTAAAATAGTATCACTAGC 57.293 33.333 0.00 0.00 37.23 3.42
1394 1462 7.361457 TGGCACTAAAATAGTATCACTAGCT 57.639 36.000 0.00 0.00 37.23 3.32
1395 1463 7.792032 TGGCACTAAAATAGTATCACTAGCTT 58.208 34.615 0.00 0.00 37.23 3.74
1396 1464 8.265055 TGGCACTAAAATAGTATCACTAGCTTT 58.735 33.333 0.00 0.00 37.23 3.51
1397 1465 8.552034 GGCACTAAAATAGTATCACTAGCTTTG 58.448 37.037 0.00 0.00 37.23 2.77
1398 1466 9.099454 GCACTAAAATAGTATCACTAGCTTTGT 57.901 33.333 0.00 0.00 37.23 2.83
1408 1476 8.850156 AGTATCACTAGCTTTGTTTTGAAATGT 58.150 29.630 0.00 0.00 0.00 2.71
1524 1592 9.654663 AACATAGAAGTACACTTATTCCTGAAC 57.345 33.333 0.00 0.00 36.11 3.18
1525 1593 7.974501 ACATAGAAGTACACTTATTCCTGAACG 59.025 37.037 0.00 0.00 36.11 3.95
1526 1594 5.721232 AGAAGTACACTTATTCCTGAACGG 58.279 41.667 0.00 0.00 36.11 4.44
1527 1595 5.479375 AGAAGTACACTTATTCCTGAACGGA 59.521 40.000 0.00 0.00 36.74 4.69
1528 1596 5.326200 AGTACACTTATTCCTGAACGGAG 57.674 43.478 0.00 0.00 44.28 4.63
1529 1597 3.611766 ACACTTATTCCTGAACGGAGG 57.388 47.619 0.00 0.00 44.28 4.30
1530 1598 2.236395 ACACTTATTCCTGAACGGAGGG 59.764 50.000 0.00 0.00 44.28 4.30
1531 1599 2.500098 CACTTATTCCTGAACGGAGGGA 59.500 50.000 0.00 0.00 44.28 4.20
1532 1600 2.500504 ACTTATTCCTGAACGGAGGGAC 59.499 50.000 0.00 0.00 44.28 4.46
1533 1601 2.544844 TATTCCTGAACGGAGGGACT 57.455 50.000 0.00 0.00 44.28 3.85
1534 1602 2.544844 ATTCCTGAACGGAGGGACTA 57.455 50.000 0.00 0.00 44.28 2.59
1535 1603 2.544844 TTCCTGAACGGAGGGACTAT 57.455 50.000 0.00 0.00 44.28 2.12
1536 1604 1.776662 TCCTGAACGGAGGGACTATG 58.223 55.000 0.00 0.00 41.55 2.23
1537 1605 0.753262 CCTGAACGGAGGGACTATGG 59.247 60.000 0.00 0.00 41.55 2.74
1538 1606 0.105039 CTGAACGGAGGGACTATGGC 59.895 60.000 0.00 0.00 41.55 4.40
1539 1607 1.335132 TGAACGGAGGGACTATGGCC 61.335 60.000 0.00 0.00 41.55 5.36
1540 1608 1.003051 AACGGAGGGACTATGGCCT 59.997 57.895 3.32 0.00 41.55 5.19
1541 1609 0.263765 AACGGAGGGACTATGGCCTA 59.736 55.000 3.32 0.00 41.55 3.93
1548 1616 2.706190 AGGGACTATGGCCTAATGTGTC 59.294 50.000 3.32 3.94 36.02 3.67
1550 1618 2.102588 GGACTATGGCCTAATGTGTCGT 59.897 50.000 3.32 0.00 0.00 4.34
1738 1806 3.621892 CTTTGGCGCCTTGCTCAGC 62.622 63.158 29.70 0.00 45.43 4.26
1759 1830 6.823689 TCAGCTGTTCTTACTTAATTCCATCC 59.176 38.462 14.67 0.00 0.00 3.51
1787 1858 4.043037 ACCGTACTGCTAGCTACATTTC 57.957 45.455 17.23 0.00 0.00 2.17
1835 2051 2.726760 CCACTTTTCTGAAGACGACTCG 59.273 50.000 0.00 0.00 0.00 4.18
1851 2070 3.427638 CGACTCGGTTCTATCTTTCTGCA 60.428 47.826 0.00 0.00 0.00 4.41
1889 2114 8.962679 CACCTCTAGTGTATTCTTTTACTCTCT 58.037 37.037 0.00 0.00 41.93 3.10
1890 2115 9.181061 ACCTCTAGTGTATTCTTTTACTCTCTC 57.819 37.037 0.00 0.00 30.75 3.20
1891 2116 9.403583 CCTCTAGTGTATTCTTTTACTCTCTCT 57.596 37.037 0.00 0.00 30.75 3.10
1893 2118 9.961264 TCTAGTGTATTCTTTTACTCTCTCTGA 57.039 33.333 0.00 0.00 30.75 3.27
1927 2152 8.978564 ACTCTGCATATTAGATTTGTATCGAG 57.021 34.615 0.00 0.00 35.85 4.04
1928 2153 8.580720 ACTCTGCATATTAGATTTGTATCGAGT 58.419 33.333 0.00 0.00 35.85 4.18
1929 2154 8.972262 TCTGCATATTAGATTTGTATCGAGTC 57.028 34.615 0.00 0.00 35.85 3.36
1930 2155 8.576442 TCTGCATATTAGATTTGTATCGAGTCA 58.424 33.333 0.00 0.00 35.85 3.41
1931 2156 9.196552 CTGCATATTAGATTTGTATCGAGTCAA 57.803 33.333 0.00 0.00 35.85 3.18
1932 2157 9.541143 TGCATATTAGATTTGTATCGAGTCAAA 57.459 29.630 16.26 16.26 37.82 2.69
1933 2158 9.798885 GCATATTAGATTTGTATCGAGTCAAAC 57.201 33.333 16.26 11.73 36.58 2.93
1938 2163 6.603095 AGATTTGTATCGAGTCAAACTTTGC 58.397 36.000 16.26 7.35 36.58 3.68
1939 2164 5.743026 TTTGTATCGAGTCAAACTTTGCA 57.257 34.783 11.86 0.00 0.00 4.08
1940 2165 5.743026 TTGTATCGAGTCAAACTTTGCAA 57.257 34.783 0.00 0.00 0.00 4.08
1941 2166 5.743026 TGTATCGAGTCAAACTTTGCAAA 57.257 34.783 12.14 12.14 0.00 3.68
1942 2167 6.125327 TGTATCGAGTCAAACTTTGCAAAA 57.875 33.333 13.84 0.00 0.00 2.44
1943 2168 6.734137 TGTATCGAGTCAAACTTTGCAAAAT 58.266 32.000 13.84 0.00 0.00 1.82
1944 2169 7.199766 TGTATCGAGTCAAACTTTGCAAAATT 58.800 30.769 13.84 6.70 0.00 1.82
1945 2170 7.704472 TGTATCGAGTCAAACTTTGCAAAATTT 59.296 29.630 12.55 12.55 0.00 1.82
1946 2171 9.176181 GTATCGAGTCAAACTTTGCAAAATTTA 57.824 29.630 17.32 2.73 0.00 1.40
1947 2172 8.641499 ATCGAGTCAAACTTTGCAAAATTTAA 57.359 26.923 17.32 1.30 0.00 1.52
1948 2173 7.890763 TCGAGTCAAACTTTGCAAAATTTAAC 58.109 30.769 17.32 13.92 0.00 2.01
1949 2174 7.009723 TCGAGTCAAACTTTGCAAAATTTAACC 59.990 33.333 17.32 8.92 0.00 2.85
1950 2175 7.201478 CGAGTCAAACTTTGCAAAATTTAACCA 60.201 33.333 17.32 1.12 0.00 3.67
1951 2176 8.329203 AGTCAAACTTTGCAAAATTTAACCAA 57.671 26.923 17.32 0.48 0.00 3.67
1952 2177 8.787852 AGTCAAACTTTGCAAAATTTAACCAAA 58.212 25.926 17.32 1.42 0.00 3.28
1953 2178 9.566530 GTCAAACTTTGCAAAATTTAACCAAAT 57.433 25.926 17.32 0.00 35.84 2.32
1990 2215 8.871629 AATACCAACATCTACAATACCAAACA 57.128 30.769 0.00 0.00 0.00 2.83
1991 2216 9.474313 AATACCAACATCTACAATACCAAACAT 57.526 29.630 0.00 0.00 0.00 2.71
2041 2266 7.112452 AGGAATCTAACAATATTGGTTTGGC 57.888 36.000 19.37 3.04 0.00 4.52
2042 2267 6.667414 AGGAATCTAACAATATTGGTTTGGCA 59.333 34.615 19.37 0.00 0.00 4.92
2043 2268 7.345392 AGGAATCTAACAATATTGGTTTGGCAT 59.655 33.333 19.37 0.00 0.00 4.40
2044 2269 7.986889 GGAATCTAACAATATTGGTTTGGCATT 59.013 33.333 19.37 7.39 0.00 3.56
2047 2272 9.985730 ATCTAACAATATTGGTTTGGCATTATG 57.014 29.630 19.37 0.00 0.00 1.90
2048 2273 9.194972 TCTAACAATATTGGTTTGGCATTATGA 57.805 29.630 19.37 4.25 0.00 2.15
2049 2274 9.814899 CTAACAATATTGGTTTGGCATTATGAA 57.185 29.630 19.37 0.00 0.00 2.57
2058 2283 9.979578 TTGGTTTGGCATTATGAATATTGATAC 57.020 29.630 0.00 0.00 0.00 2.24
2059 2284 9.365906 TGGTTTGGCATTATGAATATTGATACT 57.634 29.630 0.00 0.00 0.00 2.12
2109 2334 9.505995 TCGAAATAGTTTAACTTTGGACAAAAC 57.494 29.630 1.94 0.00 0.00 2.43
2110 2335 9.511144 CGAAATAGTTTAACTTTGGACAAAACT 57.489 29.630 1.94 0.00 41.74 2.66
2118 2343 8.958175 TTAACTTTGGACAAAACTTATATGCG 57.042 30.769 0.00 0.00 0.00 4.73
2119 2344 6.811253 ACTTTGGACAAAACTTATATGCGA 57.189 33.333 0.00 0.00 0.00 5.10
2120 2345 7.209471 ACTTTGGACAAAACTTATATGCGAA 57.791 32.000 0.00 0.00 0.00 4.70
2121 2346 7.081976 ACTTTGGACAAAACTTATATGCGAAC 58.918 34.615 0.00 0.00 0.00 3.95
2122 2347 6.811253 TTGGACAAAACTTATATGCGAACT 57.189 33.333 0.00 0.00 0.00 3.01
2123 2348 7.908827 TTGGACAAAACTTATATGCGAACTA 57.091 32.000 0.00 0.00 0.00 2.24
2124 2349 7.908827 TGGACAAAACTTATATGCGAACTAA 57.091 32.000 0.00 0.00 0.00 2.24
2125 2350 8.325421 TGGACAAAACTTATATGCGAACTAAA 57.675 30.769 0.00 0.00 0.00 1.85
2126 2351 8.784994 TGGACAAAACTTATATGCGAACTAAAA 58.215 29.630 0.00 0.00 0.00 1.52
2127 2352 9.615295 GGACAAAACTTATATGCGAACTAAAAA 57.385 29.630 0.00 0.00 0.00 1.94
2132 2357 9.836076 AAACTTATATGCGAACTAAAAAGAACC 57.164 29.630 0.00 0.00 0.00 3.62
2133 2358 7.681903 ACTTATATGCGAACTAAAAAGAACCG 58.318 34.615 0.00 0.00 0.00 4.44
2134 2359 7.546667 ACTTATATGCGAACTAAAAAGAACCGA 59.453 33.333 0.00 0.00 0.00 4.69
2135 2360 6.730960 ATATGCGAACTAAAAAGAACCGAA 57.269 33.333 0.00 0.00 0.00 4.30
2136 2361 4.461992 TGCGAACTAAAAAGAACCGAAG 57.538 40.909 0.00 0.00 0.00 3.79
2137 2362 4.121317 TGCGAACTAAAAAGAACCGAAGA 58.879 39.130 0.00 0.00 0.00 2.87
2138 2363 4.571580 TGCGAACTAAAAAGAACCGAAGAA 59.428 37.500 0.00 0.00 0.00 2.52
2139 2364 5.064962 TGCGAACTAAAAAGAACCGAAGAAA 59.935 36.000 0.00 0.00 0.00 2.52
2140 2365 5.620011 GCGAACTAAAAAGAACCGAAGAAAG 59.380 40.000 0.00 0.00 0.00 2.62
2141 2366 6.712549 CGAACTAAAAAGAACCGAAGAAAGT 58.287 36.000 0.00 0.00 0.00 2.66
2142 2367 7.517259 GCGAACTAAAAAGAACCGAAGAAAGTA 60.517 37.037 0.00 0.00 0.00 2.24
2143 2368 7.791131 CGAACTAAAAAGAACCGAAGAAAGTAC 59.209 37.037 0.00 0.00 0.00 2.73
2144 2369 8.728337 AACTAAAAAGAACCGAAGAAAGTACT 57.272 30.769 0.00 0.00 0.00 2.73
2145 2370 9.822185 AACTAAAAAGAACCGAAGAAAGTACTA 57.178 29.630 0.00 0.00 0.00 1.82
2146 2371 9.993454 ACTAAAAAGAACCGAAGAAAGTACTAT 57.007 29.630 0.00 0.00 0.00 2.12
2153 2378 6.803366 ACCGAAGAAAGTACTATGGGTAAT 57.197 37.500 0.00 0.00 31.56 1.89
2281 2506 1.463444 GTACAACTTCACCATCACCGC 59.537 52.381 0.00 0.00 0.00 5.68
2300 2525 1.529244 GCAGAGGGGCACACTGTTT 60.529 57.895 15.62 0.00 34.60 2.83
2433 3028 1.068895 TCTTCGGCGAGTGGTTTAACA 59.931 47.619 10.46 0.00 0.00 2.41
2556 3164 2.948979 TGCTCAACCAAAGGTAACACAG 59.051 45.455 0.00 0.00 33.12 3.66
2557 3165 3.211045 GCTCAACCAAAGGTAACACAGA 58.789 45.455 0.00 0.00 33.12 3.41
2560 3168 5.570234 TCAACCAAAGGTAACACAGAAAC 57.430 39.130 0.00 0.00 33.12 2.78
2572 3180 1.200020 CACAGAAACAGGCCGAATTCC 59.800 52.381 12.09 0.00 0.00 3.01
2573 3181 0.447801 CAGAAACAGGCCGAATTCCG 59.552 55.000 12.09 0.00 38.18 4.30
2575 3183 2.266376 GAAACAGGCCGAATTCCGCC 62.266 60.000 25.04 25.04 36.84 6.13
2577 3185 4.794648 CAGGCCGAATTCCGCCCA 62.795 66.667 27.57 0.00 38.42 5.36
2578 3186 3.809013 AGGCCGAATTCCGCCCAT 61.809 61.111 27.57 12.61 38.42 4.00
2579 3187 3.287520 GGCCGAATTCCGCCCATC 61.288 66.667 22.81 2.44 35.56 3.51
2582 3190 1.455383 GCCGAATTCCGCCCATCAAT 61.455 55.000 7.46 0.00 36.84 2.57
2584 3192 2.436417 CCGAATTCCGCCCATCAATAT 58.564 47.619 0.00 0.00 36.84 1.28
2585 3193 2.819608 CCGAATTCCGCCCATCAATATT 59.180 45.455 0.00 0.00 36.84 1.28
2586 3194 3.119849 CCGAATTCCGCCCATCAATATTC 60.120 47.826 0.00 0.00 36.84 1.75
2587 3195 3.501828 CGAATTCCGCCCATCAATATTCA 59.498 43.478 0.00 0.00 0.00 2.57
2592 3200 5.261209 TCCGCCCATCAATATTCAAAAAG 57.739 39.130 0.00 0.00 0.00 2.27
2593 3201 4.099266 TCCGCCCATCAATATTCAAAAAGG 59.901 41.667 0.00 0.00 0.00 3.11
2594 3202 4.370917 CGCCCATCAATATTCAAAAAGGG 58.629 43.478 0.00 0.00 36.85 3.95
2662 3411 2.914097 GGTGCAGCCAGGCAAGTT 60.914 61.111 15.80 0.00 46.93 2.66
2666 3415 0.251297 TGCAGCCAGGCAAGTTGTAT 60.251 50.000 15.80 0.00 41.65 2.29
2825 3574 1.669115 CACCAACGTGCTCCTCCTG 60.669 63.158 0.00 0.00 32.04 3.86
3169 3973 1.298667 GGCCTACCAACGACACCAT 59.701 57.895 0.00 0.00 35.26 3.55
3362 4166 1.455587 CAAGGTGGTGGTGTTGCCT 60.456 57.895 0.00 0.00 38.35 4.75
3597 4401 1.760613 TCGCTGATAACCCTGGTAAGG 59.239 52.381 0.00 0.00 44.06 2.69
3599 4403 2.483188 CGCTGATAACCCTGGTAAGGTC 60.483 54.545 0.00 0.00 42.74 3.85
3601 4405 3.136626 GCTGATAACCCTGGTAAGGTCAT 59.863 47.826 0.00 0.00 42.74 3.06
3602 4406 4.347000 GCTGATAACCCTGGTAAGGTCATA 59.653 45.833 0.00 0.00 42.74 2.15
3630 4434 2.344950 CACTTGGCAAAACTGCACAAA 58.655 42.857 0.00 0.00 36.33 2.83
3631 4435 2.094099 CACTTGGCAAAACTGCACAAAC 59.906 45.455 0.00 0.00 36.33 2.93
3633 4437 2.007360 TGGCAAAACTGCACAAACTG 57.993 45.000 0.00 0.00 36.33 3.16
3634 4438 1.547820 TGGCAAAACTGCACAAACTGA 59.452 42.857 0.00 0.00 36.33 3.41
3635 4439 1.926510 GGCAAAACTGCACAAACTGAC 59.073 47.619 0.00 0.00 36.33 3.51
3636 4440 1.583404 GCAAAACTGCACAAACTGACG 59.417 47.619 0.00 0.00 34.41 4.35
3637 4441 2.730715 GCAAAACTGCACAAACTGACGA 60.731 45.455 0.00 0.00 34.41 4.20
3638 4442 3.497118 CAAAACTGCACAAACTGACGAA 58.503 40.909 0.00 0.00 0.00 3.85
3639 4443 2.825086 AACTGCACAAACTGACGAAC 57.175 45.000 0.00 0.00 0.00 3.95
3640 4444 2.024176 ACTGCACAAACTGACGAACT 57.976 45.000 0.00 0.00 0.00 3.01
3641 4445 1.665679 ACTGCACAAACTGACGAACTG 59.334 47.619 0.00 0.00 0.00 3.16
3642 4446 1.003545 CTGCACAAACTGACGAACTGG 60.004 52.381 0.00 0.00 0.00 4.00
3644 4448 1.668751 GCACAAACTGACGAACTGGAA 59.331 47.619 0.00 0.00 0.00 3.53
3654 4458 0.243636 CGAACTGGAAATGGGGTTGC 59.756 55.000 0.00 0.00 0.00 4.17
3661 4465 3.768757 CTGGAAATGGGGTTGCTTGATTA 59.231 43.478 0.00 0.00 0.00 1.75
3663 4467 4.782156 TGGAAATGGGGTTGCTTGATTAAT 59.218 37.500 0.00 0.00 0.00 1.40
3664 4468 5.250313 TGGAAATGGGGTTGCTTGATTAATT 59.750 36.000 0.00 0.00 0.00 1.40
3665 4469 5.817296 GGAAATGGGGTTGCTTGATTAATTC 59.183 40.000 0.00 0.00 0.00 2.17
3666 4470 6.371595 AAATGGGGTTGCTTGATTAATTCA 57.628 33.333 0.00 0.00 0.00 2.57
3667 4471 4.799564 TGGGGTTGCTTGATTAATTCAC 57.200 40.909 0.00 0.00 32.84 3.18
3668 4472 4.415596 TGGGGTTGCTTGATTAATTCACT 58.584 39.130 0.00 0.00 32.84 3.41
3761 4565 1.475280 CTGAAGATGGCATTGGTGGTG 59.525 52.381 0.00 0.00 0.00 4.17
3830 4634 2.306805 TCTACCCGTCTGTTAGACTCCA 59.693 50.000 7.31 0.00 42.92 3.86
3849 4653 1.535462 CAGCCGTTAACCTTGACCAAG 59.465 52.381 0.00 2.89 38.14 3.61
3851 4655 1.534163 GCCGTTAACCTTGACCAAGAC 59.466 52.381 11.06 1.15 40.79 3.01
3860 4664 2.932614 CCTTGACCAAGACTGCTATTCG 59.067 50.000 11.06 0.00 40.79 3.34
3896 4723 4.615121 GGTTTGCATAAACACACACATACG 59.385 41.667 3.80 0.00 46.28 3.06
3900 4727 6.541111 TGCATAAACACACACATACGTAAA 57.459 33.333 0.00 0.00 0.00 2.01
3901 4728 7.135089 TGCATAAACACACACATACGTAAAT 57.865 32.000 0.00 0.00 0.00 1.40
3902 4729 7.018235 TGCATAAACACACACATACGTAAATG 58.982 34.615 0.00 3.49 0.00 2.32
3905 4732 5.621197 AACACACACATACGTAAATGCAT 57.379 34.783 0.00 0.00 0.00 3.96
3941 4768 9.515226 AAAAGATGTAGTGCTTAATTTCTACCA 57.485 29.630 0.00 0.00 33.91 3.25
3977 4804 5.653769 TCCCATTCTCATTCTTTCCAATGTC 59.346 40.000 0.00 0.00 35.56 3.06
3996 4823 0.504384 CACGCTCTGTTCTTGTCACG 59.496 55.000 0.00 0.00 0.00 4.35
4000 4827 1.784525 CTCTGTTCTTGTCACGGGTC 58.215 55.000 0.00 0.00 0.00 4.46
4034 4879 7.575414 TTTACTTGACATTGTTTGGAAGCTA 57.425 32.000 0.00 0.00 0.00 3.32
4035 4880 5.695851 ACTTGACATTGTTTGGAAGCTAG 57.304 39.130 0.00 0.00 0.00 3.42
4077 4925 1.325355 TACGCTACCTGCCTATGGTC 58.675 55.000 0.00 0.00 38.88 4.02
4086 4934 1.302033 GCCTATGGTCGGGCATGAG 60.302 63.158 0.00 0.00 46.84 2.90
4130 5008 4.097286 AGGATAAGAACAGTCGAGAGAAGC 59.903 45.833 0.00 0.00 45.01 3.86
4152 5030 1.683917 CATTCGTAGAGAGGGACCAGG 59.316 57.143 0.00 0.00 38.43 4.45
4153 5031 0.033405 TTCGTAGAGAGGGACCAGGG 60.033 60.000 0.00 0.00 38.43 4.45
4154 5032 2.128507 CGTAGAGAGGGACCAGGGC 61.129 68.421 0.00 0.00 0.00 5.19
4236 5114 2.362397 TCTTGTACATGATCTCCTCGGC 59.638 50.000 7.33 0.00 0.00 5.54
4287 5193 2.572095 CTATGTCGCCCGACCAAGCA 62.572 60.000 17.06 0.00 43.97 3.91
4289 5195 3.723348 GTCGCCCGACCAAGCAAC 61.723 66.667 9.53 0.00 39.08 4.17
4310 5217 3.386543 GGACCGATCCAACATGAGG 57.613 57.895 0.00 0.41 45.47 3.86
4347 5259 2.997315 TCCTCTCCCACGTGCCAG 60.997 66.667 10.91 7.86 0.00 4.85
4387 5302 0.318699 CTCGAAGTTGACACGCTCCA 60.319 55.000 0.00 0.00 0.00 3.86
4390 5305 1.335597 CGAAGTTGACACGCTCCAGTA 60.336 52.381 0.00 0.00 0.00 2.74
4391 5306 2.059541 GAAGTTGACACGCTCCAGTAC 58.940 52.381 0.00 0.00 0.00 2.73
4393 5308 0.318445 GTTGACACGCTCCAGTACGT 60.318 55.000 0.00 0.00 44.75 3.57
4397 5312 2.049433 ACGCTCCAGTACGTGTGC 60.049 61.111 0.00 0.00 41.76 4.57
4398 5313 2.258591 CGCTCCAGTACGTGTGCT 59.741 61.111 0.00 0.00 0.00 4.40
4481 5396 1.098050 GGGTCATGTGTTGATCAGCC 58.902 55.000 7.13 0.00 37.18 4.85
4491 5406 5.368145 TGTGTTGATCAGCCATAACTATCC 58.632 41.667 7.13 0.00 0.00 2.59
4499 5434 4.833380 TCAGCCATAACTATCCCTCTACAC 59.167 45.833 0.00 0.00 0.00 2.90
4500 5435 4.835615 CAGCCATAACTATCCCTCTACACT 59.164 45.833 0.00 0.00 0.00 3.55
4529 5464 2.892425 GGCTGGCTGTCGATTCCG 60.892 66.667 0.00 0.00 37.07 4.30
4543 5481 0.248907 ATTCCGTCGATGGCAGTACG 60.249 55.000 19.40 10.89 35.20 3.67
4546 5484 1.872234 CGTCGATGGCAGTACGGTG 60.872 63.158 10.20 1.95 0.00 4.94
4548 5486 3.254654 CGATGGCAGTACGGTGCG 61.255 66.667 0.00 0.00 45.00 5.34
4693 5664 1.226030 CGAAAGTGTCGGGGTGGAAC 61.226 60.000 0.00 0.00 46.45 3.62
4723 5694 3.930229 TGAGTCGGGATTGTTTGTAATCG 59.070 43.478 0.00 0.00 37.82 3.34
4733 5704 7.494625 GGGATTGTTTGTAATCGTCAGATAAGA 59.505 37.037 0.00 0.00 37.82 2.10
4747 5718 6.019961 CGTCAGATAAGAAGAAACTGATGAGC 60.020 42.308 0.00 0.00 43.16 4.26
4800 5771 7.014711 GTGACTCCTGAATCCTGATACTGATAA 59.985 40.741 0.00 0.00 0.00 1.75
4801 5772 7.732140 TGACTCCTGAATCCTGATACTGATAAT 59.268 37.037 0.00 0.00 0.00 1.28
4802 5773 9.249053 GACTCCTGAATCCTGATACTGATAATA 57.751 37.037 0.00 0.00 0.00 0.98
4803 5774 9.253832 ACTCCTGAATCCTGATACTGATAATAG 57.746 37.037 0.00 0.00 0.00 1.73
4804 5775 8.601047 TCCTGAATCCTGATACTGATAATAGG 57.399 38.462 0.00 0.00 0.00 2.57
4805 5776 7.124901 TCCTGAATCCTGATACTGATAATAGGC 59.875 40.741 0.00 0.00 0.00 3.93
4806 5777 7.125507 CCTGAATCCTGATACTGATAATAGGCT 59.874 40.741 0.00 0.00 0.00 4.58
4807 5778 8.441311 TGAATCCTGATACTGATAATAGGCTT 57.559 34.615 0.00 0.00 0.00 4.35
4808 5779 8.884323 TGAATCCTGATACTGATAATAGGCTTT 58.116 33.333 0.00 0.00 0.00 3.51
4809 5780 9.732130 GAATCCTGATACTGATAATAGGCTTTT 57.268 33.333 0.00 0.00 0.00 2.27
4810 5781 9.732130 AATCCTGATACTGATAATAGGCTTTTC 57.268 33.333 0.00 0.00 0.00 2.29
4811 5782 8.497910 TCCTGATACTGATAATAGGCTTTTCT 57.502 34.615 0.00 0.00 0.00 2.52
4812 5783 8.938883 TCCTGATACTGATAATAGGCTTTTCTT 58.061 33.333 0.00 0.00 0.00 2.52
4813 5784 9.566432 CCTGATACTGATAATAGGCTTTTCTTT 57.434 33.333 0.00 0.00 0.00 2.52
4817 5788 7.778470 ACTGATAATAGGCTTTTCTTTCTCG 57.222 36.000 0.00 0.00 0.00 4.04
4818 5789 7.556844 ACTGATAATAGGCTTTTCTTTCTCGA 58.443 34.615 0.00 0.00 0.00 4.04
4819 5790 7.708752 ACTGATAATAGGCTTTTCTTTCTCGAG 59.291 37.037 5.93 5.93 0.00 4.04
4820 5791 7.782049 TGATAATAGGCTTTTCTTTCTCGAGA 58.218 34.615 12.08 12.08 0.00 4.04
4821 5792 8.258007 TGATAATAGGCTTTTCTTTCTCGAGAA 58.742 33.333 23.74 23.74 34.00 2.87
4822 5793 6.976636 AATAGGCTTTTCTTTCTCGAGAAG 57.023 37.500 25.73 19.50 37.01 2.85
4823 5794 3.070748 AGGCTTTTCTTTCTCGAGAAGC 58.929 45.455 25.73 23.20 45.32 3.86
4824 5795 2.159774 GGCTTTTCTTTCTCGAGAAGCG 60.160 50.000 25.73 20.40 46.35 4.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
7 8 4.060900 CAGACAAACTATGCAGACACACT 58.939 43.478 0.00 0.00 0.00 3.55
8 9 4.058124 TCAGACAAACTATGCAGACACAC 58.942 43.478 0.00 0.00 0.00 3.82
9 10 4.058124 GTCAGACAAACTATGCAGACACA 58.942 43.478 0.00 0.00 0.00 3.72
10 11 3.121944 CGTCAGACAAACTATGCAGACAC 59.878 47.826 0.41 0.00 0.00 3.67
11 12 3.243737 ACGTCAGACAAACTATGCAGACA 60.244 43.478 0.41 0.00 0.00 3.41
12 13 3.318017 ACGTCAGACAAACTATGCAGAC 58.682 45.455 0.41 0.00 0.00 3.51
13 14 3.660501 ACGTCAGACAAACTATGCAGA 57.339 42.857 0.41 0.00 0.00 4.26
14 15 3.123621 GGAACGTCAGACAAACTATGCAG 59.876 47.826 0.41 0.00 0.00 4.41
15 16 3.064207 GGAACGTCAGACAAACTATGCA 58.936 45.455 0.41 0.00 0.00 3.96
16 17 3.064207 TGGAACGTCAGACAAACTATGC 58.936 45.455 0.41 0.00 0.00 3.14
22 23 1.668751 GCAGTTGGAACGTCAGACAAA 59.331 47.619 0.41 0.00 0.00 2.83
23 24 1.295792 GCAGTTGGAACGTCAGACAA 58.704 50.000 0.41 0.00 0.00 3.18
41 42 1.256812 ACTTGCACCCCAGTTTATGC 58.743 50.000 0.00 0.00 38.59 3.14
155 156 4.794169 CAACCGAGGTTTAAGTTCCATTG 58.206 43.478 4.52 0.00 36.00 2.82
156 157 3.254903 GCAACCGAGGTTTAAGTTCCATT 59.745 43.478 4.52 0.00 36.00 3.16
157 158 2.817844 GCAACCGAGGTTTAAGTTCCAT 59.182 45.455 4.52 0.00 36.00 3.41
174 195 1.154543 CTTTTACGACGGCCGCAAC 60.155 57.895 28.58 16.26 43.32 4.17
176 197 2.739287 CCTTTTACGACGGCCGCA 60.739 61.111 28.58 4.92 43.32 5.69
177 198 3.493440 CCCTTTTACGACGGCCGC 61.493 66.667 28.58 17.52 43.32 6.53
178 199 1.153509 ATCCCTTTTACGACGGCCG 60.154 57.895 26.86 26.86 45.44 6.13
179 200 1.712018 GCATCCCTTTTACGACGGCC 61.712 60.000 0.00 0.00 0.00 6.13
180 201 1.022451 TGCATCCCTTTTACGACGGC 61.022 55.000 0.00 0.00 0.00 5.68
181 202 1.129811 GTTGCATCCCTTTTACGACGG 59.870 52.381 0.00 0.00 0.00 4.79
182 203 2.073816 AGTTGCATCCCTTTTACGACG 58.926 47.619 0.00 0.00 0.00 5.12
183 204 5.585047 AGATAAGTTGCATCCCTTTTACGAC 59.415 40.000 0.00 0.00 0.00 4.34
184 205 5.741011 AGATAAGTTGCATCCCTTTTACGA 58.259 37.500 0.00 0.00 0.00 3.43
185 206 5.276868 CGAGATAAGTTGCATCCCTTTTACG 60.277 44.000 0.00 0.00 0.00 3.18
186 207 5.585047 ACGAGATAAGTTGCATCCCTTTTAC 59.415 40.000 0.00 0.00 0.00 2.01
187 208 5.741011 ACGAGATAAGTTGCATCCCTTTTA 58.259 37.500 0.00 0.00 0.00 1.52
188 209 4.589908 ACGAGATAAGTTGCATCCCTTTT 58.410 39.130 0.00 0.00 0.00 2.27
189 210 4.222124 ACGAGATAAGTTGCATCCCTTT 57.778 40.909 0.00 0.00 0.00 3.11
190 211 3.914426 ACGAGATAAGTTGCATCCCTT 57.086 42.857 0.00 0.00 0.00 3.95
191 212 3.914426 AACGAGATAAGTTGCATCCCT 57.086 42.857 0.00 0.00 0.00 4.20
192 213 4.965119 AAAACGAGATAAGTTGCATCCC 57.035 40.909 0.00 0.00 31.43 3.85
193 214 5.585047 ACCTAAAACGAGATAAGTTGCATCC 59.415 40.000 0.00 0.00 31.43 3.51
194 215 6.238130 GGACCTAAAACGAGATAAGTTGCATC 60.238 42.308 0.00 0.00 31.43 3.91
195 216 5.585047 GGACCTAAAACGAGATAAGTTGCAT 59.415 40.000 0.00 0.00 31.43 3.96
200 221 8.953223 ATATAGGGACCTAAAACGAGATAAGT 57.047 34.615 1.59 0.00 31.73 2.24
208 229 5.581085 GCTGCATATATAGGGACCTAAAACG 59.419 44.000 1.59 0.00 31.73 3.60
233 254 2.462255 AAAGATTGCACAGCGGCGTG 62.462 55.000 9.37 16.75 40.00 5.34
235 256 0.167908 TAAAAGATTGCACAGCGGCG 59.832 50.000 0.51 0.51 36.28 6.46
238 259 3.058293 TCCAACTAAAAGATTGCACAGCG 60.058 43.478 0.00 0.00 0.00 5.18
275 296 4.036380 GGAACACTTCAACTTACAGGGTTG 59.964 45.833 0.00 0.00 43.57 3.77
282 303 4.825085 TGGGATTGGAACACTTCAACTTAC 59.175 41.667 0.00 0.00 39.29 2.34
311 332 1.270518 ACTGTGCATGGAGTGACTGAC 60.271 52.381 0.00 0.00 0.00 3.51
343 364 0.301687 CTCGGCGGTTGATTCATTCG 59.698 55.000 7.21 5.23 0.00 3.34
389 410 0.040958 GTTCAGCAGCGACCTTGTTG 60.041 55.000 0.00 0.00 0.00 3.33
390 411 0.179045 AGTTCAGCAGCGACCTTGTT 60.179 50.000 0.00 0.00 0.00 2.83
391 412 0.882042 CAGTTCAGCAGCGACCTTGT 60.882 55.000 0.00 0.00 0.00 3.16
392 413 0.601046 TCAGTTCAGCAGCGACCTTG 60.601 55.000 0.00 0.00 0.00 3.61
402 423 0.040336 TGTCGTCTCGTCAGTTCAGC 60.040 55.000 0.00 0.00 0.00 4.26
461 482 1.219393 CTCGGTTCCTCTGGAAGGC 59.781 63.158 0.00 0.00 42.88 4.35
476 497 0.176449 TGGTCATGGTCTGATGCTCG 59.824 55.000 0.00 0.00 35.97 5.03
479 500 2.149578 GCTATGGTCATGGTCTGATGC 58.850 52.381 0.00 0.00 35.97 3.91
492 513 2.032860 CTGCCGTGCCTAGCTATGGT 62.033 60.000 0.00 0.00 0.00 3.55
493 514 1.301244 CTGCCGTGCCTAGCTATGG 60.301 63.158 0.00 0.00 0.00 2.74
494 515 0.319728 ATCTGCCGTGCCTAGCTATG 59.680 55.000 0.00 0.00 0.00 2.23
495 516 1.001406 GAATCTGCCGTGCCTAGCTAT 59.999 52.381 0.00 0.00 0.00 2.97
496 517 0.389391 GAATCTGCCGTGCCTAGCTA 59.611 55.000 0.00 0.00 0.00 3.32
497 518 1.144936 GAATCTGCCGTGCCTAGCT 59.855 57.895 0.00 0.00 0.00 3.32
524 550 3.875727 CTCAGGACTCATGATGCGAAATT 59.124 43.478 0.00 0.00 0.00 1.82
526 552 2.419159 CCTCAGGACTCATGATGCGAAA 60.419 50.000 0.00 0.00 0.00 3.46
539 565 1.102222 ATCGGAGTACGCCTCAGGAC 61.102 60.000 14.12 0.00 42.40 3.85
542 568 0.738975 TGAATCGGAGTACGCCTCAG 59.261 55.000 14.12 0.00 42.40 3.35
635 680 0.968405 TGCAGGCAAAGGGATTGTTC 59.032 50.000 0.00 0.00 41.32 3.18
651 696 0.605319 CGCTGGGGTTTTAGAGTGCA 60.605 55.000 0.00 0.00 0.00 4.57
723 779 0.179097 GGAGGAAGATGGCACGAGAC 60.179 60.000 0.00 0.00 0.00 3.36
731 787 1.907739 TTGCTCGGGAGGAAGATGG 59.092 57.895 0.00 0.00 33.74 3.51
789 845 8.918202 AAATATGAGAAGTGTTAGGTGTTGAA 57.082 30.769 0.00 0.00 0.00 2.69
837 893 4.156008 GGTGAAGATACGATGTTTTGCCTT 59.844 41.667 0.00 0.00 0.00 4.35
920 976 2.014554 CGCGCGCTCGTACCATAAT 61.015 57.895 30.48 0.00 38.14 1.28
970 1028 0.749649 ACCCTCTGATCGATCTGCAC 59.250 55.000 25.02 0.30 0.00 4.57
984 1042 2.046285 CATTGCCGTCCCAACCCTC 61.046 63.158 0.00 0.00 0.00 4.30
1114 1172 7.791029 AGCAAATAAAACAAGGAGGAAGAAAA 58.209 30.769 0.00 0.00 0.00 2.29
1116 1174 6.976934 AGCAAATAAAACAAGGAGGAAGAA 57.023 33.333 0.00 0.00 0.00 2.52
1119 1177 7.453126 TCCATAAGCAAATAAAACAAGGAGGAA 59.547 33.333 0.00 0.00 0.00 3.36
1120 1178 6.951198 TCCATAAGCAAATAAAACAAGGAGGA 59.049 34.615 0.00 0.00 0.00 3.71
1121 1179 7.093771 ACTCCATAAGCAAATAAAACAAGGAGG 60.094 37.037 0.00 0.00 41.45 4.30
1128 1187 9.023967 CAGCATAACTCCATAAGCAAATAAAAC 57.976 33.333 0.00 0.00 0.00 2.43
1130 1189 7.147932 TGCAGCATAACTCCATAAGCAAATAAA 60.148 33.333 0.00 0.00 0.00 1.40
1133 1192 4.646040 TGCAGCATAACTCCATAAGCAAAT 59.354 37.500 0.00 0.00 0.00 2.32
1135 1194 3.619419 TGCAGCATAACTCCATAAGCAA 58.381 40.909 0.00 0.00 0.00 3.91
1138 1197 5.303165 TGAGATGCAGCATAACTCCATAAG 58.697 41.667 17.43 0.00 0.00 1.73
1162 1222 0.588233 CGCTTGCTTGACATCGATGC 60.588 55.000 25.11 17.40 0.00 3.91
1170 1230 0.239347 AATCTGTGCGCTTGCTTGAC 59.761 50.000 9.73 0.00 40.12 3.18
1186 1246 5.066893 TGCATTTGAGAGGTGCAATCTAATC 59.933 40.000 2.79 0.75 44.99 1.75
1187 1247 4.951715 TGCATTTGAGAGGTGCAATCTAAT 59.048 37.500 2.79 0.00 44.99 1.73
1189 1249 3.954200 TGCATTTGAGAGGTGCAATCTA 58.046 40.909 2.79 0.00 44.99 1.98
1190 1250 2.799017 TGCATTTGAGAGGTGCAATCT 58.201 42.857 2.41 2.41 44.99 2.40
1225 1289 2.910688 TGGTCTCAACTGGACAACTC 57.089 50.000 0.00 0.00 35.61 3.01
1257 1321 2.097825 GGAGCATCTGCCAGAACAAAT 58.902 47.619 0.00 0.00 43.38 2.32
1258 1322 1.538047 GGAGCATCTGCCAGAACAAA 58.462 50.000 0.00 0.00 43.38 2.83
1275 1343 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
1276 1344 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
1280 1348 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
1281 1349 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
1282 1350 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
1283 1351 4.556104 GCTAGATGTACACTTATTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
1284 1352 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
1285 1353 4.537965 AGCTAGATGTACACTTATTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
1286 1354 6.830114 AAAGCTAGATGTACACTTATTCGC 57.170 37.500 0.00 0.00 0.00 4.70
1287 1355 8.635877 AGAAAAGCTAGATGTACACTTATTCG 57.364 34.615 0.00 0.00 0.00 3.34
1288 1356 9.036671 GGAGAAAAGCTAGATGTACACTTATTC 57.963 37.037 0.00 4.39 0.00 1.75
1289 1357 8.763601 AGGAGAAAAGCTAGATGTACACTTATT 58.236 33.333 0.00 0.00 0.00 1.40
1290 1358 8.312669 AGGAGAAAAGCTAGATGTACACTTAT 57.687 34.615 0.00 0.00 0.00 1.73
1291 1359 7.719871 AGGAGAAAAGCTAGATGTACACTTA 57.280 36.000 0.00 0.00 0.00 2.24
1292 1360 6.613153 AGGAGAAAAGCTAGATGTACACTT 57.387 37.500 0.00 0.00 0.00 3.16
1293 1361 7.397761 ACTTAGGAGAAAAGCTAGATGTACACT 59.602 37.037 0.00 0.13 0.00 3.55
1294 1362 7.548967 ACTTAGGAGAAAAGCTAGATGTACAC 58.451 38.462 0.00 0.00 0.00 2.90
1295 1363 7.396339 TGACTTAGGAGAAAAGCTAGATGTACA 59.604 37.037 0.00 0.00 0.00 2.90
1296 1364 7.773149 TGACTTAGGAGAAAAGCTAGATGTAC 58.227 38.462 0.00 0.00 0.00 2.90
1297 1365 7.956328 TGACTTAGGAGAAAAGCTAGATGTA 57.044 36.000 0.00 0.00 0.00 2.29
1298 1366 6.859112 TGACTTAGGAGAAAAGCTAGATGT 57.141 37.500 0.00 0.00 0.00 3.06
1299 1367 7.821846 ACTTTGACTTAGGAGAAAAGCTAGATG 59.178 37.037 0.00 0.00 35.45 2.90
1300 1368 7.912719 ACTTTGACTTAGGAGAAAAGCTAGAT 58.087 34.615 0.00 0.00 35.45 1.98
1301 1369 7.304497 ACTTTGACTTAGGAGAAAAGCTAGA 57.696 36.000 0.00 0.00 35.45 2.43
1302 1370 7.971183 AACTTTGACTTAGGAGAAAAGCTAG 57.029 36.000 0.00 0.00 35.45 3.42
1303 1371 8.747538 AAAACTTTGACTTAGGAGAAAAGCTA 57.252 30.769 0.00 0.00 35.45 3.32
1304 1372 7.646548 AAAACTTTGACTTAGGAGAAAAGCT 57.353 32.000 0.00 0.00 35.45 3.74
1305 1373 9.797556 TTTAAAACTTTGACTTAGGAGAAAAGC 57.202 29.630 0.00 0.00 35.45 3.51
1353 1421 5.981174 AGTGCCATAAATGCTGCTATTTTT 58.019 33.333 12.76 5.83 32.79 1.94
1354 1422 5.603170 AGTGCCATAAATGCTGCTATTTT 57.397 34.783 12.76 7.76 32.79 1.82
1355 1423 6.713762 TTAGTGCCATAAATGCTGCTATTT 57.286 33.333 0.00 8.04 34.78 1.40
1356 1424 6.713762 TTTAGTGCCATAAATGCTGCTATT 57.286 33.333 0.00 0.00 0.00 1.73
1357 1425 6.713762 TTTTAGTGCCATAAATGCTGCTAT 57.286 33.333 0.00 0.00 0.00 2.97
1358 1426 6.713762 ATTTTAGTGCCATAAATGCTGCTA 57.286 33.333 0.00 0.00 0.00 3.49
1359 1427 5.603170 ATTTTAGTGCCATAAATGCTGCT 57.397 34.783 0.00 0.00 0.00 4.24
1360 1428 6.507023 ACTATTTTAGTGCCATAAATGCTGC 58.493 36.000 0.00 0.00 37.69 5.25
1361 1429 9.831737 GATACTATTTTAGTGCCATAAATGCTG 57.168 33.333 0.00 0.00 39.81 4.41
1362 1430 9.573166 TGATACTATTTTAGTGCCATAAATGCT 57.427 29.630 0.00 0.00 39.81 3.79
1363 1431 9.612620 GTGATACTATTTTAGTGCCATAAATGC 57.387 33.333 0.00 0.00 39.81 3.56
1367 1435 9.706691 GCTAGTGATACTATTTTAGTGCCATAA 57.293 33.333 0.00 0.00 39.81 1.90
1368 1436 9.090103 AGCTAGTGATACTATTTTAGTGCCATA 57.910 33.333 0.00 0.00 39.81 2.74
1369 1437 7.967908 AGCTAGTGATACTATTTTAGTGCCAT 58.032 34.615 0.00 0.00 39.81 4.40
1370 1438 7.361457 AGCTAGTGATACTATTTTAGTGCCA 57.639 36.000 0.00 0.00 39.81 4.92
1371 1439 8.552034 CAAAGCTAGTGATACTATTTTAGTGCC 58.448 37.037 0.00 0.00 39.81 5.01
1372 1440 9.099454 ACAAAGCTAGTGATACTATTTTAGTGC 57.901 33.333 4.40 0.00 39.81 4.40
1382 1450 8.850156 ACATTTCAAAACAAAGCTAGTGATACT 58.150 29.630 4.40 0.00 0.00 2.12
1498 1566 9.654663 GTTCAGGAATAAGTGTACTTCTATGTT 57.345 33.333 0.00 0.00 37.40 2.71
1499 1567 7.974501 CGTTCAGGAATAAGTGTACTTCTATGT 59.025 37.037 0.00 0.00 37.40 2.29
1500 1568 7.435488 CCGTTCAGGAATAAGTGTACTTCTATG 59.565 40.741 0.00 0.00 45.00 2.23
1501 1569 7.490000 CCGTTCAGGAATAAGTGTACTTCTAT 58.510 38.462 0.00 0.00 45.00 1.98
1502 1570 6.860080 CCGTTCAGGAATAAGTGTACTTCTA 58.140 40.000 0.00 0.00 45.00 2.10
1503 1571 5.721232 CCGTTCAGGAATAAGTGTACTTCT 58.279 41.667 0.00 0.00 45.00 2.85
1518 1586 0.753262 CCATAGTCCCTCCGTTCAGG 59.247 60.000 0.00 0.00 42.97 3.86
1519 1587 0.105039 GCCATAGTCCCTCCGTTCAG 59.895 60.000 0.00 0.00 0.00 3.02
1520 1588 1.335132 GGCCATAGTCCCTCCGTTCA 61.335 60.000 0.00 0.00 0.00 3.18
1521 1589 1.049289 AGGCCATAGTCCCTCCGTTC 61.049 60.000 5.01 0.00 0.00 3.95
1522 1590 0.263765 TAGGCCATAGTCCCTCCGTT 59.736 55.000 5.01 0.00 32.65 4.44
1523 1591 0.263765 TTAGGCCATAGTCCCTCCGT 59.736 55.000 5.01 0.00 32.65 4.69
1524 1592 1.276421 CATTAGGCCATAGTCCCTCCG 59.724 57.143 5.01 0.00 32.65 4.63
1525 1593 2.039084 CACATTAGGCCATAGTCCCTCC 59.961 54.545 5.01 0.00 32.65 4.30
1526 1594 2.706190 ACACATTAGGCCATAGTCCCTC 59.294 50.000 5.01 0.00 32.65 4.30
1527 1595 2.706190 GACACATTAGGCCATAGTCCCT 59.294 50.000 5.01 0.00 35.22 4.20
1528 1596 2.548067 CGACACATTAGGCCATAGTCCC 60.548 54.545 5.01 0.00 0.00 4.46
1529 1597 2.102588 ACGACACATTAGGCCATAGTCC 59.897 50.000 5.01 0.00 0.00 3.85
1530 1598 3.454371 ACGACACATTAGGCCATAGTC 57.546 47.619 5.01 3.07 0.00 2.59
1531 1599 3.906720 AACGACACATTAGGCCATAGT 57.093 42.857 5.01 0.00 0.00 2.12
1532 1600 6.861065 ATTAAACGACACATTAGGCCATAG 57.139 37.500 5.01 0.00 0.00 2.23
1533 1601 7.476667 CAAATTAAACGACACATTAGGCCATA 58.523 34.615 5.01 0.00 0.00 2.74
1534 1602 6.329496 CAAATTAAACGACACATTAGGCCAT 58.671 36.000 5.01 0.00 0.00 4.40
1535 1603 5.704888 CAAATTAAACGACACATTAGGCCA 58.295 37.500 5.01 0.00 0.00 5.36
1536 1604 4.561213 GCAAATTAAACGACACATTAGGCC 59.439 41.667 0.00 0.00 0.00 5.19
1537 1605 5.157781 TGCAAATTAAACGACACATTAGGC 58.842 37.500 0.00 0.00 0.00 3.93
1538 1606 5.799936 CCTGCAAATTAAACGACACATTAGG 59.200 40.000 0.00 0.00 0.00 2.69
1539 1607 6.305399 CACCTGCAAATTAAACGACACATTAG 59.695 38.462 0.00 0.00 0.00 1.73
1540 1608 6.017026 TCACCTGCAAATTAAACGACACATTA 60.017 34.615 0.00 0.00 0.00 1.90
1541 1609 4.981674 CACCTGCAAATTAAACGACACATT 59.018 37.500 0.00 0.00 0.00 2.71
1548 1616 4.143347 GCATTGTCACCTGCAAATTAAACG 60.143 41.667 2.40 0.00 38.28 3.60
1550 1618 4.953667 TGCATTGTCACCTGCAAATTAAA 58.046 34.783 6.77 0.00 44.87 1.52
1630 1698 0.468214 TTGTGACGATTTTGGGGCCA 60.468 50.000 4.39 0.00 0.00 5.36
1636 1704 2.351738 GCCTTCCCTTGTGACGATTTTG 60.352 50.000 0.00 0.00 0.00 2.44
1738 1806 5.276868 CGCGGATGGAATTAAGTAAGAACAG 60.277 44.000 0.00 0.00 0.00 3.16
1741 1809 5.013568 TCGCGGATGGAATTAAGTAAGAA 57.986 39.130 6.13 0.00 0.00 2.52
1759 1830 1.671469 CTAGCAGTACGGTTATCGCG 58.329 55.000 0.00 0.00 43.89 5.87
1798 1869 2.125233 AGTGGCTGTGATGAGGATGAT 58.875 47.619 0.00 0.00 0.00 2.45
1803 1874 2.486982 CAGAAAAGTGGCTGTGATGAGG 59.513 50.000 0.00 0.00 0.00 3.86
1804 1875 3.405831 TCAGAAAAGTGGCTGTGATGAG 58.594 45.455 0.00 0.00 33.90 2.90
1902 2127 8.580720 ACTCGATACAAATCTAATATGCAGAGT 58.419 33.333 0.00 0.00 0.00 3.24
1903 2128 8.978564 ACTCGATACAAATCTAATATGCAGAG 57.021 34.615 0.00 0.00 0.00 3.35
1904 2129 8.576442 TGACTCGATACAAATCTAATATGCAGA 58.424 33.333 0.00 0.00 0.00 4.26
1905 2130 8.748380 TGACTCGATACAAATCTAATATGCAG 57.252 34.615 0.00 0.00 0.00 4.41
1906 2131 9.541143 TTTGACTCGATACAAATCTAATATGCA 57.459 29.630 11.34 0.00 32.26 3.96
1907 2132 9.798885 GTTTGACTCGATACAAATCTAATATGC 57.201 33.333 16.18 2.29 38.09 3.14
1912 2137 8.227791 GCAAAGTTTGACTCGATACAAATCTAA 58.772 33.333 19.82 0.00 38.09 2.10
1913 2138 7.386573 TGCAAAGTTTGACTCGATACAAATCTA 59.613 33.333 19.82 0.00 38.09 1.98
1914 2139 6.204688 TGCAAAGTTTGACTCGATACAAATCT 59.795 34.615 19.82 12.96 38.09 2.40
1915 2140 6.370593 TGCAAAGTTTGACTCGATACAAATC 58.629 36.000 19.82 11.57 38.09 2.17
1916 2141 6.312399 TGCAAAGTTTGACTCGATACAAAT 57.688 33.333 19.82 3.71 38.09 2.32
1917 2142 5.743026 TGCAAAGTTTGACTCGATACAAA 57.257 34.783 19.82 11.34 34.33 2.83
1918 2143 5.743026 TTGCAAAGTTTGACTCGATACAA 57.257 34.783 19.82 8.13 0.00 2.41
1919 2144 5.743026 TTTGCAAAGTTTGACTCGATACA 57.257 34.783 19.82 2.20 0.00 2.29
1920 2145 7.623268 AATTTTGCAAAGTTTGACTCGATAC 57.377 32.000 19.82 0.00 0.00 2.24
1921 2146 9.737427 TTAAATTTTGCAAAGTTTGACTCGATA 57.263 25.926 31.37 14.16 31.54 2.92
1922 2147 8.539674 GTTAAATTTTGCAAAGTTTGACTCGAT 58.460 29.630 30.68 14.68 33.97 3.59
1923 2148 7.009723 GGTTAAATTTTGCAAAGTTTGACTCGA 59.990 33.333 33.44 18.31 35.72 4.04
1924 2149 7.116819 GGTTAAATTTTGCAAAGTTTGACTCG 58.883 34.615 33.44 0.00 35.72 4.18
1925 2150 7.969314 TGGTTAAATTTTGCAAAGTTTGACTC 58.031 30.769 33.44 27.30 35.72 3.36
1926 2151 7.913674 TGGTTAAATTTTGCAAAGTTTGACT 57.086 28.000 33.44 18.65 35.72 3.41
1927 2152 8.956617 TTTGGTTAAATTTTGCAAAGTTTGAC 57.043 26.923 30.40 30.40 35.12 3.18
1964 2189 9.303116 TGTTTGGTATTGTAGATGTTGGTATTT 57.697 29.630 0.00 0.00 0.00 1.40
1965 2190 8.871629 TGTTTGGTATTGTAGATGTTGGTATT 57.128 30.769 0.00 0.00 0.00 1.89
2015 2240 8.691797 GCCAAACCAATATTGTTAGATTCCTTA 58.308 33.333 14.25 0.00 0.00 2.69
2016 2241 7.180051 TGCCAAACCAATATTGTTAGATTCCTT 59.820 33.333 14.25 0.00 0.00 3.36
2017 2242 6.667414 TGCCAAACCAATATTGTTAGATTCCT 59.333 34.615 14.25 0.00 0.00 3.36
2018 2243 6.872920 TGCCAAACCAATATTGTTAGATTCC 58.127 36.000 14.25 0.00 0.00 3.01
2019 2244 8.947055 AATGCCAAACCAATATTGTTAGATTC 57.053 30.769 14.25 0.00 0.00 2.52
2021 2246 9.985730 CATAATGCCAAACCAATATTGTTAGAT 57.014 29.630 14.25 0.00 0.00 1.98
2022 2247 9.194972 TCATAATGCCAAACCAATATTGTTAGA 57.805 29.630 14.25 2.16 0.00 2.10
2023 2248 9.814899 TTCATAATGCCAAACCAATATTGTTAG 57.185 29.630 14.25 1.98 0.00 2.34
2032 2257 9.979578 GTATCAATATTCATAATGCCAAACCAA 57.020 29.630 0.00 0.00 0.00 3.67
2033 2258 9.365906 AGTATCAATATTCATAATGCCAAACCA 57.634 29.630 0.00 0.00 0.00 3.67
2083 2308 9.505995 GTTTTGTCCAAAGTTAAACTATTTCGA 57.494 29.630 0.00 0.00 0.00 3.71
2084 2309 9.511144 AGTTTTGTCCAAAGTTAAACTATTTCG 57.489 29.630 0.00 0.00 37.30 3.46
2092 2317 9.400638 CGCATATAAGTTTTGTCCAAAGTTAAA 57.599 29.630 1.90 0.00 41.57 1.52
2093 2318 8.784994 TCGCATATAAGTTTTGTCCAAAGTTAA 58.215 29.630 1.90 0.00 41.57 2.01
2094 2319 8.325421 TCGCATATAAGTTTTGTCCAAAGTTA 57.675 30.769 0.53 0.53 42.16 2.24
2095 2320 7.209471 TCGCATATAAGTTTTGTCCAAAGTT 57.791 32.000 0.00 0.00 40.52 2.66
2096 2321 6.811253 TCGCATATAAGTTTTGTCCAAAGT 57.189 33.333 0.00 0.00 0.00 2.66
2097 2322 7.305474 AGTTCGCATATAAGTTTTGTCCAAAG 58.695 34.615 0.00 0.00 0.00 2.77
2098 2323 7.209471 AGTTCGCATATAAGTTTTGTCCAAA 57.791 32.000 0.00 0.00 0.00 3.28
2099 2324 6.811253 AGTTCGCATATAAGTTTTGTCCAA 57.189 33.333 0.00 0.00 0.00 3.53
2100 2325 7.908827 TTAGTTCGCATATAAGTTTTGTCCA 57.091 32.000 0.00 0.00 0.00 4.02
2101 2326 9.615295 TTTTTAGTTCGCATATAAGTTTTGTCC 57.385 29.630 0.00 0.00 0.00 4.02
2106 2331 9.836076 GGTTCTTTTTAGTTCGCATATAAGTTT 57.164 29.630 0.00 0.00 0.00 2.66
2107 2332 8.173130 CGGTTCTTTTTAGTTCGCATATAAGTT 58.827 33.333 0.00 0.00 0.00 2.66
2108 2333 7.546667 TCGGTTCTTTTTAGTTCGCATATAAGT 59.453 33.333 0.00 0.00 0.00 2.24
2109 2334 7.902032 TCGGTTCTTTTTAGTTCGCATATAAG 58.098 34.615 0.00 0.00 0.00 1.73
2110 2335 7.830940 TCGGTTCTTTTTAGTTCGCATATAA 57.169 32.000 0.00 0.00 0.00 0.98
2111 2336 7.760794 TCTTCGGTTCTTTTTAGTTCGCATATA 59.239 33.333 0.00 0.00 0.00 0.86
2112 2337 6.592607 TCTTCGGTTCTTTTTAGTTCGCATAT 59.407 34.615 0.00 0.00 0.00 1.78
2113 2338 5.927689 TCTTCGGTTCTTTTTAGTTCGCATA 59.072 36.000 0.00 0.00 0.00 3.14
2114 2339 4.753107 TCTTCGGTTCTTTTTAGTTCGCAT 59.247 37.500 0.00 0.00 0.00 4.73
2115 2340 4.121317 TCTTCGGTTCTTTTTAGTTCGCA 58.879 39.130 0.00 0.00 0.00 5.10
2116 2341 4.720530 TCTTCGGTTCTTTTTAGTTCGC 57.279 40.909 0.00 0.00 0.00 4.70
2117 2342 6.712549 ACTTTCTTCGGTTCTTTTTAGTTCG 58.287 36.000 0.00 0.00 0.00 3.95
2118 2343 8.824781 AGTACTTTCTTCGGTTCTTTTTAGTTC 58.175 33.333 0.00 0.00 0.00 3.01
2119 2344 8.728337 AGTACTTTCTTCGGTTCTTTTTAGTT 57.272 30.769 0.00 0.00 0.00 2.24
2120 2345 9.993454 ATAGTACTTTCTTCGGTTCTTTTTAGT 57.007 29.630 0.00 0.00 0.00 2.24
2122 2347 9.211485 CCATAGTACTTTCTTCGGTTCTTTTTA 57.789 33.333 0.00 0.00 0.00 1.52
2123 2348 7.174426 CCCATAGTACTTTCTTCGGTTCTTTTT 59.826 37.037 0.00 0.00 0.00 1.94
2124 2349 6.653740 CCCATAGTACTTTCTTCGGTTCTTTT 59.346 38.462 0.00 0.00 0.00 2.27
2125 2350 6.171213 CCCATAGTACTTTCTTCGGTTCTTT 58.829 40.000 0.00 0.00 0.00 2.52
2126 2351 5.247792 ACCCATAGTACTTTCTTCGGTTCTT 59.752 40.000 0.00 0.00 0.00 2.52
2127 2352 4.776308 ACCCATAGTACTTTCTTCGGTTCT 59.224 41.667 0.00 0.00 0.00 3.01
2128 2353 5.082251 ACCCATAGTACTTTCTTCGGTTC 57.918 43.478 0.00 0.00 0.00 3.62
2129 2354 6.610075 TTACCCATAGTACTTTCTTCGGTT 57.390 37.500 0.00 0.00 0.00 4.44
2130 2355 6.803366 ATTACCCATAGTACTTTCTTCGGT 57.197 37.500 0.00 1.56 0.00 4.69
2131 2356 6.482308 CCAATTACCCATAGTACTTTCTTCGG 59.518 42.308 0.00 0.00 0.00 4.30
2132 2357 6.018180 GCCAATTACCCATAGTACTTTCTTCG 60.018 42.308 0.00 0.00 0.00 3.79
2133 2358 6.018180 CGCCAATTACCCATAGTACTTTCTTC 60.018 42.308 0.00 0.00 0.00 2.87
2134 2359 5.820947 CGCCAATTACCCATAGTACTTTCTT 59.179 40.000 0.00 0.00 0.00 2.52
2135 2360 5.104652 ACGCCAATTACCCATAGTACTTTCT 60.105 40.000 0.00 0.00 0.00 2.52
2136 2361 5.121105 ACGCCAATTACCCATAGTACTTTC 58.879 41.667 0.00 0.00 0.00 2.62
2137 2362 5.106876 ACGCCAATTACCCATAGTACTTT 57.893 39.130 0.00 0.00 0.00 2.66
2138 2363 4.765813 ACGCCAATTACCCATAGTACTT 57.234 40.909 0.00 0.00 0.00 2.24
2139 2364 4.162698 TCAACGCCAATTACCCATAGTACT 59.837 41.667 0.00 0.00 0.00 2.73
2140 2365 4.444536 TCAACGCCAATTACCCATAGTAC 58.555 43.478 0.00 0.00 0.00 2.73
2141 2366 4.757019 TCAACGCCAATTACCCATAGTA 57.243 40.909 0.00 0.00 0.00 1.82
2142 2367 3.637911 TCAACGCCAATTACCCATAGT 57.362 42.857 0.00 0.00 0.00 2.12
2143 2368 3.882888 ACATCAACGCCAATTACCCATAG 59.117 43.478 0.00 0.00 0.00 2.23
2144 2369 3.629855 CACATCAACGCCAATTACCCATA 59.370 43.478 0.00 0.00 0.00 2.74
2145 2370 2.426738 CACATCAACGCCAATTACCCAT 59.573 45.455 0.00 0.00 0.00 4.00
2146 2371 1.815613 CACATCAACGCCAATTACCCA 59.184 47.619 0.00 0.00 0.00 4.51
2153 2378 2.965147 GCGCTCACATCAACGCCAA 61.965 57.895 0.00 0.00 45.35 4.52
2281 2506 3.832237 AACAGTGTGCCCCTCTGCG 62.832 63.158 0.00 0.00 38.05 5.18
2288 2513 1.227234 GTGCCAAAACAGTGTGCCC 60.227 57.895 0.00 0.00 0.00 5.36
2556 3164 1.136774 GCGGAATTCGGCCTGTTTC 59.863 57.895 23.46 0.18 39.69 2.78
2557 3165 3.274067 GCGGAATTCGGCCTGTTT 58.726 55.556 23.46 0.00 39.69 2.83
2572 3180 4.370917 CCCTTTTTGAATATTGATGGGCG 58.629 43.478 0.00 0.00 0.00 6.13
2575 3183 5.261209 TCGCCCTTTTTGAATATTGATGG 57.739 39.130 0.00 0.00 0.00 3.51
2577 3185 8.791327 AAAAATCGCCCTTTTTGAATATTGAT 57.209 26.923 0.00 0.00 37.04 2.57
2662 3411 0.676184 GATCAGCCGGAGCAGATACA 59.324 55.000 5.05 0.00 44.48 2.29
2666 3415 1.219124 GTTGATCAGCCGGAGCAGA 59.781 57.895 5.05 0.00 43.86 4.26
3169 3973 0.669318 GTTCATGGACGCCGAGAACA 60.669 55.000 18.81 0.00 38.70 3.18
3357 4161 0.531090 ACGCTCGTGTTGTAAGGCAA 60.531 50.000 0.00 0.00 34.16 4.52
3362 4166 0.319211 CCTCCACGCTCGTGTTGTAA 60.319 55.000 19.25 1.39 44.02 2.41
3469 4273 4.729856 ACGGGTCGTAGTTGCCGC 62.730 66.667 0.00 0.00 38.73 6.53
3597 4401 4.137116 TGCCAAGTGGAGTATGTATGAC 57.863 45.455 0.18 0.00 37.39 3.06
3599 4403 5.415701 AGTTTTGCCAAGTGGAGTATGTATG 59.584 40.000 0.18 0.00 37.39 2.39
3601 4405 4.759693 CAGTTTTGCCAAGTGGAGTATGTA 59.240 41.667 0.18 0.00 37.39 2.29
3602 4406 3.569701 CAGTTTTGCCAAGTGGAGTATGT 59.430 43.478 0.18 0.00 37.39 2.29
3630 4434 1.271379 CCCCATTTCCAGTTCGTCAGT 60.271 52.381 0.00 0.00 0.00 3.41
3631 4435 1.271379 ACCCCATTTCCAGTTCGTCAG 60.271 52.381 0.00 0.00 0.00 3.51
3633 4437 1.539827 CAACCCCATTTCCAGTTCGTC 59.460 52.381 0.00 0.00 0.00 4.20
3634 4438 1.616159 CAACCCCATTTCCAGTTCGT 58.384 50.000 0.00 0.00 0.00 3.85
3635 4439 0.243636 GCAACCCCATTTCCAGTTCG 59.756 55.000 0.00 0.00 0.00 3.95
3636 4440 1.632589 AGCAACCCCATTTCCAGTTC 58.367 50.000 0.00 0.00 0.00 3.01
3637 4441 1.693606 CAAGCAACCCCATTTCCAGTT 59.306 47.619 0.00 0.00 0.00 3.16
3638 4442 1.133199 TCAAGCAACCCCATTTCCAGT 60.133 47.619 0.00 0.00 0.00 4.00
3639 4443 1.631405 TCAAGCAACCCCATTTCCAG 58.369 50.000 0.00 0.00 0.00 3.86
3640 4444 2.323999 ATCAAGCAACCCCATTTCCA 57.676 45.000 0.00 0.00 0.00 3.53
3641 4445 4.817318 TTAATCAAGCAACCCCATTTCC 57.183 40.909 0.00 0.00 0.00 3.13
3642 4446 6.313658 GTGAATTAATCAAGCAACCCCATTTC 59.686 38.462 0.00 0.00 40.50 2.17
3644 4448 5.484998 AGTGAATTAATCAAGCAACCCCATT 59.515 36.000 0.00 0.00 40.50 3.16
3654 4458 9.837525 CAAGGAAAAGAGAGTGAATTAATCAAG 57.162 33.333 0.00 0.00 40.50 3.02
3661 4465 5.566230 GCATGCAAGGAAAAGAGAGTGAATT 60.566 40.000 14.21 0.00 0.00 2.17
3663 4467 3.254166 GCATGCAAGGAAAAGAGAGTGAA 59.746 43.478 14.21 0.00 0.00 3.18
3664 4468 2.816087 GCATGCAAGGAAAAGAGAGTGA 59.184 45.455 14.21 0.00 0.00 3.41
3665 4469 2.094854 GGCATGCAAGGAAAAGAGAGTG 60.095 50.000 21.36 0.00 0.00 3.51
3666 4470 2.165998 GGCATGCAAGGAAAAGAGAGT 58.834 47.619 21.36 0.00 0.00 3.24
3667 4471 1.131883 CGGCATGCAAGGAAAAGAGAG 59.868 52.381 21.36 0.00 0.00 3.20
3668 4472 1.167851 CGGCATGCAAGGAAAAGAGA 58.832 50.000 21.36 0.00 0.00 3.10
3698 4502 3.126729 GTGGCAATGCATGAACCAC 57.873 52.632 22.82 22.82 43.57 4.16
3754 4558 1.373435 GGACCATCGTTCACCACCA 59.627 57.895 0.00 0.00 0.00 4.17
3830 4634 1.418637 TCTTGGTCAAGGTTAACGGCT 59.581 47.619 10.39 0.00 38.88 5.52
3849 4653 5.864628 AAGGAAAGAAACGAATAGCAGTC 57.135 39.130 0.00 0.00 0.00 3.51
3851 4655 5.048713 ACCAAAGGAAAGAAACGAATAGCAG 60.049 40.000 0.00 0.00 0.00 4.24
3860 4664 7.065204 TGTTTATGCAAACCAAAGGAAAGAAAC 59.935 33.333 0.00 0.00 42.88 2.78
3919 4746 8.438676 ACATGGTAGAAATTAAGCACTACATC 57.561 34.615 0.00 0.00 37.52 3.06
3921 4748 9.325198 CATACATGGTAGAAATTAAGCACTACA 57.675 33.333 0.00 0.00 37.52 2.74
3922 4749 9.326413 ACATACATGGTAGAAATTAAGCACTAC 57.674 33.333 0.00 0.00 35.79 2.73
3931 4758 9.707957 TGGGAAAATACATACATGGTAGAAATT 57.292 29.630 0.00 0.00 0.00 1.82
3932 4759 9.881773 ATGGGAAAATACATACATGGTAGAAAT 57.118 29.630 0.00 0.00 0.00 2.17
3934 4761 9.349713 GAATGGGAAAATACATACATGGTAGAA 57.650 33.333 0.00 0.00 0.00 2.10
3935 4762 8.723365 AGAATGGGAAAATACATACATGGTAGA 58.277 33.333 0.00 0.00 0.00 2.59
3936 4763 8.924511 AGAATGGGAAAATACATACATGGTAG 57.075 34.615 0.00 0.00 0.00 3.18
3937 4764 8.498575 TGAGAATGGGAAAATACATACATGGTA 58.501 33.333 0.00 0.00 0.00 3.25
3938 4765 7.353525 TGAGAATGGGAAAATACATACATGGT 58.646 34.615 0.00 0.00 0.00 3.55
3939 4766 7.822161 TGAGAATGGGAAAATACATACATGG 57.178 36.000 0.00 0.00 0.00 3.66
3940 4767 9.903682 GAATGAGAATGGGAAAATACATACATG 57.096 33.333 0.00 0.00 0.00 3.21
3941 4768 9.872684 AGAATGAGAATGGGAAAATACATACAT 57.127 29.630 0.00 0.00 0.00 2.29
3977 4804 0.504384 CGTGACAAGAACAGAGCGTG 59.496 55.000 0.00 0.00 0.00 5.34
4084 4932 2.615912 GTGTAGCAAATCATCTGGCCTC 59.384 50.000 3.32 0.00 0.00 4.70
4086 4934 2.648059 AGTGTAGCAAATCATCTGGCC 58.352 47.619 0.00 0.00 0.00 5.36
4130 5008 0.030908 GGTCCCTCTCTACGAATGCG 59.969 60.000 0.00 0.00 44.79 4.73
4152 5030 5.060662 TGATATCGACTAATACTGCTGCC 57.939 43.478 0.00 0.00 0.00 4.85
4153 5031 4.560819 GCTGATATCGACTAATACTGCTGC 59.439 45.833 0.00 0.00 0.00 5.25
4154 5032 5.703876 TGCTGATATCGACTAATACTGCTG 58.296 41.667 0.00 0.00 0.00 4.41
4208 5086 5.070180 AGGAGATCATGTACAAGATCCAGTG 59.930 44.000 28.59 9.47 41.16 3.66
4236 5114 2.430244 ACTACACGGTCAAGCGCG 60.430 61.111 0.00 0.00 0.00 6.86
4310 5217 2.733593 GACAGGGCGTGACGTGTC 60.734 66.667 14.98 12.25 45.30 3.67
4329 5241 2.997315 TGGCACGTGGGAGAGGAG 60.997 66.667 18.88 0.00 0.00 3.69
4330 5242 2.997315 CTGGCACGTGGGAGAGGA 60.997 66.667 18.88 0.00 0.00 3.71
4331 5243 4.767255 GCTGGCACGTGGGAGAGG 62.767 72.222 18.88 0.00 0.00 3.69
4332 5244 3.655810 GAGCTGGCACGTGGGAGAG 62.656 68.421 18.88 0.00 0.00 3.20
4333 5245 3.695606 GAGCTGGCACGTGGGAGA 61.696 66.667 18.88 0.00 0.00 3.71
4347 5259 2.517166 GAAATGGAGGCCCCGAGC 60.517 66.667 0.00 0.00 42.60 5.03
4352 5264 0.462759 CGAGACAGAAATGGAGGCCC 60.463 60.000 0.00 0.00 0.00 5.80
4452 5367 0.815213 CACATGACCCGGCCTACATG 60.815 60.000 19.21 19.21 43.56 3.21
4481 5396 9.173021 CTGATCTAGTGTAGAGGGATAGTTATG 57.827 40.741 0.00 0.00 38.38 1.90
4491 5406 3.566322 CCGGAACTGATCTAGTGTAGAGG 59.434 52.174 0.00 0.00 40.26 3.69
4499 5434 0.249657 GCCAGCCGGAACTGATCTAG 60.250 60.000 5.05 0.00 40.25 2.43
4500 5435 0.687757 AGCCAGCCGGAACTGATCTA 60.688 55.000 5.05 0.00 40.25 1.98
4529 5464 2.165301 GCACCGTACTGCCATCGAC 61.165 63.158 0.00 0.00 0.00 4.20
4543 5481 1.016130 CCTGTCATGAGTCACGCACC 61.016 60.000 0.00 0.00 0.00 5.01
4546 5484 1.357258 CTGCCTGTCATGAGTCACGC 61.357 60.000 0.00 0.00 0.00 5.34
4548 5486 1.357258 CGCTGCCTGTCATGAGTCAC 61.357 60.000 0.00 0.00 0.00 3.67
4706 5677 3.930229 TCTGACGATTACAAACAATCCCG 59.070 43.478 0.00 0.00 32.30 5.14
4723 5694 7.041107 AGCTCATCAGTTTCTTCTTATCTGAC 58.959 38.462 0.00 0.00 37.85 3.51
4747 5718 1.736126 ACACGATGCAAATGCTCTGAG 59.264 47.619 6.97 0.00 42.66 3.35
4800 5771 4.873259 GCTTCTCGAGAAAGAAAAGCCTAT 59.127 41.667 26.87 0.00 34.95 2.57
4801 5772 4.246458 GCTTCTCGAGAAAGAAAAGCCTA 58.754 43.478 26.87 2.20 34.95 3.93
4802 5773 3.070748 GCTTCTCGAGAAAGAAAAGCCT 58.929 45.455 26.87 0.00 34.95 4.58
4803 5774 2.159774 CGCTTCTCGAGAAAGAAAAGCC 60.160 50.000 26.87 10.49 41.67 4.35
4804 5775 3.097032 CGCTTCTCGAGAAAGAAAAGC 57.903 47.619 26.87 23.04 41.67 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.