Multiple sequence alignment - TraesCS4A01G096200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G096200 chr4A 100.000 6946 0 0 1 6946 104374697 104381642 0.000000e+00 12827.0
1 TraesCS4A01G096200 chr4A 77.876 113 18 6 560 666 317087888 317087999 5.820000e-06 63.9
2 TraesCS4A01G096200 chr4D 95.117 6164 194 39 24 6133 360498228 360492118 0.000000e+00 9616.0
3 TraesCS4A01G096200 chr4D 88.140 430 45 3 6518 6946 360491890 360491466 2.240000e-139 507.0
4 TraesCS4A01G096200 chr4D 84.815 270 37 2 6136 6401 360492194 360491925 1.150000e-67 268.0
5 TraesCS4A01G096200 chr4B 96.373 4053 97 20 2047 6062 445277067 445273028 0.000000e+00 6625.0
6 TraesCS4A01G096200 chr4B 85.369 2030 152 55 4 1989 445278995 445277067 0.000000e+00 1969.0
7 TraesCS4A01G096200 chr4B 81.595 326 51 5 6134 6455 40639511 40639191 1.920000e-65 261.0
8 TraesCS4A01G096200 chr4B 81.040 327 51 7 6134 6455 40640907 40640587 4.160000e-62 250.0
9 TraesCS4A01G096200 chr6D 80.671 745 119 13 6134 6871 6831235 6830509 7.870000e-154 555.0
10 TraesCS4A01G096200 chr6D 85.271 129 18 1 6000 6127 425005242 425005370 1.570000e-26 132.0
11 TraesCS4A01G096200 chr7D 79.597 745 125 15 6134 6872 39020512 39019789 6.220000e-140 508.0
12 TraesCS4A01G096200 chr7D 80.303 660 109 17 6134 6787 160855453 160854809 4.870000e-131 479.0
13 TraesCS4A01G096200 chr7D 80.805 323 50 5 6134 6455 613458820 613458509 6.960000e-60 243.0
14 TraesCS4A01G096200 chr7B 80.535 673 107 13 6212 6880 498599116 498599768 4.840000e-136 496.0
15 TraesCS4A01G096200 chr7B 79.283 753 117 23 6134 6878 541944332 541945053 2.250000e-134 490.0
16 TraesCS4A01G096200 chr7B 81.633 588 87 10 6296 6880 742246649 742247218 1.050000e-127 468.0
17 TraesCS4A01G096200 chr7B 79.472 682 118 11 6205 6881 719060890 719061554 1.360000e-126 464.0
18 TraesCS4A01G096200 chr6B 80.000 675 110 14 6212 6881 563975217 563975871 6.300000e-130 475.0
19 TraesCS4A01G096200 chr6B 76.593 675 114 21 6134 6805 631942903 631943536 1.440000e-86 331.0
20 TraesCS4A01G096200 chr6B 82.703 185 24 6 5956 6135 633728016 633727835 2.590000e-34 158.0
21 TraesCS4A01G096200 chr5B 81.565 575 87 8 6295 6867 658467091 658466534 2.280000e-124 457.0
22 TraesCS4A01G096200 chr5B 82.857 140 22 2 6000 6137 6507758 6507897 2.630000e-24 124.0
23 TraesCS4A01G096200 chr5B 87.500 48 5 1 142 188 442852776 442852729 4.000000e-03 54.7
24 TraesCS4A01G096200 chr2D 79.275 690 112 21 6210 6891 571067818 571067152 2.950000e-123 453.0
25 TraesCS4A01G096200 chr1B 79.351 678 114 16 6210 6880 72803649 72804307 2.950000e-123 453.0
26 TraesCS4A01G096200 chr1B 85.714 126 17 1 5998 6122 268533672 268533547 1.570000e-26 132.0
27 TraesCS4A01G096200 chr3A 83.607 427 66 4 6456 6880 743229014 743229438 1.400000e-106 398.0
28 TraesCS4A01G096200 chr3A 87.218 133 15 2 5998 6129 623600782 623600651 4.340000e-32 150.0
29 TraesCS4A01G096200 chr3D 87.143 140 15 3 6001 6139 61771309 61771172 9.330000e-34 156.0
30 TraesCS4A01G096200 chr1D 84.507 142 19 3 6005 6145 470585946 470585807 3.380000e-28 137.0
31 TraesCS4A01G096200 chr2B 85.714 126 17 1 5998 6122 12309297 12309172 1.570000e-26 132.0
32 TraesCS4A01G096200 chr2A 78.626 131 20 5 6006 6135 753088821 753088944 5.780000e-11 80.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G096200 chr4A 104374697 104381642 6945 False 12827.000000 12827 100.000000 1 6946 1 chr4A.!!$F1 6945
1 TraesCS4A01G096200 chr4D 360491466 360498228 6762 True 3463.666667 9616 89.357333 24 6946 3 chr4D.!!$R1 6922
2 TraesCS4A01G096200 chr4B 445273028 445278995 5967 True 4297.000000 6625 90.871000 4 6062 2 chr4B.!!$R2 6058
3 TraesCS4A01G096200 chr4B 40639191 40640907 1716 True 255.500000 261 81.317500 6134 6455 2 chr4B.!!$R1 321
4 TraesCS4A01G096200 chr6D 6830509 6831235 726 True 555.000000 555 80.671000 6134 6871 1 chr6D.!!$R1 737
5 TraesCS4A01G096200 chr7D 39019789 39020512 723 True 508.000000 508 79.597000 6134 6872 1 chr7D.!!$R1 738
6 TraesCS4A01G096200 chr7D 160854809 160855453 644 True 479.000000 479 80.303000 6134 6787 1 chr7D.!!$R2 653
7 TraesCS4A01G096200 chr7B 498599116 498599768 652 False 496.000000 496 80.535000 6212 6880 1 chr7B.!!$F1 668
8 TraesCS4A01G096200 chr7B 541944332 541945053 721 False 490.000000 490 79.283000 6134 6878 1 chr7B.!!$F2 744
9 TraesCS4A01G096200 chr7B 742246649 742247218 569 False 468.000000 468 81.633000 6296 6880 1 chr7B.!!$F4 584
10 TraesCS4A01G096200 chr7B 719060890 719061554 664 False 464.000000 464 79.472000 6205 6881 1 chr7B.!!$F3 676
11 TraesCS4A01G096200 chr6B 563975217 563975871 654 False 475.000000 475 80.000000 6212 6881 1 chr6B.!!$F1 669
12 TraesCS4A01G096200 chr6B 631942903 631943536 633 False 331.000000 331 76.593000 6134 6805 1 chr6B.!!$F2 671
13 TraesCS4A01G096200 chr5B 658466534 658467091 557 True 457.000000 457 81.565000 6295 6867 1 chr5B.!!$R2 572
14 TraesCS4A01G096200 chr2D 571067152 571067818 666 True 453.000000 453 79.275000 6210 6891 1 chr2D.!!$R1 681
15 TraesCS4A01G096200 chr1B 72803649 72804307 658 False 453.000000 453 79.351000 6210 6880 1 chr1B.!!$F1 670

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.107017 GCAAGGCAGCCTCTATCCAA 60.107 55.000 16.53 0.0 30.89 3.53 F
1459 1480 0.394352 GGTGCTGGGGAACGATCAAT 60.394 55.000 0.00 0.0 0.00 2.57 F
1986 2030 1.151668 CGGGCAGTATAGATGCTTGC 58.848 55.000 9.17 0.0 43.35 4.01 F
2186 2230 1.202188 GCCAAGCGCAAGGAAGAATAC 60.202 52.381 20.65 0.0 37.47 1.89 F
3616 3663 3.442625 CCTGTATCGAGGTACACAACTCA 59.557 47.826 0.00 0.0 33.36 3.41 F
4187 4258 2.325583 TTGCGTATCATTCACCCCTC 57.674 50.000 0.00 0.0 0.00 4.30 F
5149 5222 1.001378 GCGCTGCTGGGTAAATATTGG 60.001 52.381 0.00 0.0 0.00 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1967 2011 1.151668 GCAAGCATCTATACTGCCCG 58.848 55.000 0.00 0.0 40.56 6.13 R
3330 3377 4.207955 TGTACAGCTGAGTCGAGGAATAT 58.792 43.478 23.35 0.0 0.00 1.28 R
3960 4031 7.224297 AGAGTATTTGCACAGAAAGAAGGTAA 58.776 34.615 0.00 0.0 0.00 2.85 R
4187 4258 6.458342 GCGTGGAATTTGAGGAAAGTTATAGG 60.458 42.308 0.00 0.0 0.00 2.57 R
5123 5196 0.467804 TTACCCAGCAGCGCATGATA 59.532 50.000 11.47 0.0 0.00 2.15 R
5677 5751 0.102300 GCCAGTTTTCTGCCGTTTGT 59.898 50.000 0.00 0.0 45.76 2.83 R
6453 6544 0.032815 TTGTCGTCAATGCAGACCGA 59.967 50.000 0.00 0.0 35.07 4.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.142748 CAGACACCTCCTCCATCGC 59.857 63.158 0.00 0.00 0.00 4.58
28 29 4.227134 CTCCTCCATCGCGGGGTG 62.227 72.222 6.13 5.61 30.29 4.61
45 46 1.902508 GGTGGTCATCTCTCACCTTCA 59.097 52.381 0.00 0.00 45.36 3.02
57 58 1.080434 ACCTTCAGCGAGCTCGTTC 60.080 57.895 34.46 20.47 42.22 3.95
77 78 0.107017 GCAAGGCAGCCTCTATCCAA 60.107 55.000 16.53 0.00 30.89 3.53
88 89 2.418609 CCTCTATCCAATGTGCGTGACA 60.419 50.000 0.00 0.00 39.53 3.58
121 122 1.152963 ACGCAAGGCTGGACAAGTT 60.153 52.632 0.00 0.00 46.39 2.66
129 130 0.877743 GCTGGACAAGTTGAGCTTCC 59.122 55.000 10.54 6.58 34.69 3.46
147 152 1.884926 CGCTCCATCGAAAGGCTCC 60.885 63.158 2.54 0.00 0.00 4.70
148 153 1.524482 GCTCCATCGAAAGGCTCCT 59.476 57.895 2.54 0.00 0.00 3.69
188 193 1.377725 GTCATGGCAGAGGTGGTGG 60.378 63.158 0.00 0.00 0.00 4.61
189 194 1.847506 TCATGGCAGAGGTGGTGGT 60.848 57.895 0.00 0.00 0.00 4.16
223 229 1.372582 AACAGATGTGGTGCTATGCG 58.627 50.000 0.00 0.00 0.00 4.73
240 246 3.589881 GGATCGTGCCTGGCATGC 61.590 66.667 31.36 20.04 44.29 4.06
255 261 2.161609 GGCATGCCCACGTATAAATAGC 59.838 50.000 27.24 0.00 0.00 2.97
256 262 2.811431 GCATGCCCACGTATAAATAGCA 59.189 45.455 6.36 0.00 0.00 3.49
300 307 2.281139 TGTCAATGCGGGCGTCAA 60.281 55.556 0.00 0.00 0.00 3.18
313 320 2.614983 GGGCGTCAAAGTTAGTTTGTCA 59.385 45.455 11.67 0.00 45.18 3.58
322 329 2.038033 AGTTAGTTTGTCAGCCGCCTTA 59.962 45.455 0.00 0.00 0.00 2.69
334 341 2.089201 GCCGCCTTACCTGTTTAATGT 58.911 47.619 0.00 0.00 0.00 2.71
335 342 2.490509 GCCGCCTTACCTGTTTAATGTT 59.509 45.455 0.00 0.00 0.00 2.71
344 351 7.012894 CCTTACCTGTTTAATGTTGACAGACAA 59.987 37.037 5.92 0.00 42.54 3.18
346 353 7.346751 ACCTGTTTAATGTTGACAGACAAAT 57.653 32.000 5.92 0.00 42.54 2.32
378 385 6.540438 ACCGATTTCAAAGTGGTAGATAGA 57.460 37.500 0.00 0.00 0.00 1.98
405 412 4.405680 CCCATCTTGTATAGTCCAGACACA 59.594 45.833 0.00 0.00 0.00 3.72
468 475 2.745884 CGCCACTTCAATGCCGGA 60.746 61.111 5.05 0.00 0.00 5.14
478 485 1.831106 TCAATGCCGGATGTAGTGACT 59.169 47.619 5.05 0.00 28.51 3.41
563 570 3.815569 GACGGAGCGCGAGAGATGG 62.816 68.421 12.10 0.00 0.00 3.51
656 663 1.504900 GTCCGGTTTGCGGGATTTC 59.495 57.895 0.00 0.00 44.32 2.17
756 764 2.081462 CGTTGGAGACGCCCTTATTTT 58.919 47.619 0.00 0.00 45.86 1.82
758 766 2.018542 TGGAGACGCCCTTATTTTCG 57.981 50.000 0.00 0.00 34.97 3.46
770 779 6.038492 CGCCCTTATTTTCGTTCCCTATAAAA 59.962 38.462 0.00 0.00 0.00 1.52
771 780 7.255346 CGCCCTTATTTTCGTTCCCTATAAAAT 60.255 37.037 0.00 0.00 36.04 1.82
882 903 1.161563 TTGGGTTCCGCGAGTTTGTC 61.162 55.000 8.23 0.00 0.00 3.18
883 904 1.301479 GGGTTCCGCGAGTTTGTCT 60.301 57.895 8.23 0.00 0.00 3.41
884 905 1.289800 GGGTTCCGCGAGTTTGTCTC 61.290 60.000 8.23 0.00 39.62 3.36
885 906 1.289800 GGTTCCGCGAGTTTGTCTCC 61.290 60.000 8.23 0.00 39.84 3.71
886 907 1.005394 TTCCGCGAGTTTGTCTCCC 60.005 57.895 8.23 0.00 39.84 4.30
887 908 2.434359 CCGCGAGTTTGTCTCCCC 60.434 66.667 8.23 0.00 39.84 4.81
888 909 2.434359 CGCGAGTTTGTCTCCCCC 60.434 66.667 0.00 0.00 39.84 5.40
952 973 4.111053 GTTTCTCCTCCCCGCCCC 62.111 72.222 0.00 0.00 0.00 5.80
973 994 1.409227 CTGCTCACACATCTCGTCGC 61.409 60.000 0.00 0.00 0.00 5.19
998 1019 1.807981 CGAATCCGCGTGCCACTAA 60.808 57.895 4.92 0.00 0.00 2.24
1000 1021 1.004320 AATCCGCGTGCCACTAACA 60.004 52.632 4.92 0.00 0.00 2.41
1114 1135 1.623311 GGTTGGGTTTGGATTTGGAGG 59.377 52.381 0.00 0.00 0.00 4.30
1429 1450 8.504815 GTTTTAGAGCTTTGAGTTACTTTAGGG 58.495 37.037 0.00 0.00 0.00 3.53
1435 1456 4.986054 TTGAGTTACTTTAGGGCTCCAA 57.014 40.909 0.00 0.00 0.00 3.53
1459 1480 0.394352 GGTGCTGGGGAACGATCAAT 60.394 55.000 0.00 0.00 0.00 2.57
1538 1561 4.870991 GTGGTTTCTGCCTAGCTAAACTAG 59.129 45.833 7.31 0.00 46.95 2.57
1564 1604 4.402056 TCTTAATTCTGTTAGCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
1567 1607 1.984288 ATTCTGTTAGCCCTCCGCCC 61.984 60.000 0.00 0.00 38.78 6.13
1626 1666 5.667626 AGAGATCTATCAAAGCCCCTAACAA 59.332 40.000 0.00 0.00 0.00 2.83
1633 1673 3.153919 CAAAGCCCCTAACAACTAAGCA 58.846 45.455 0.00 0.00 0.00 3.91
1664 1704 2.838202 ACGTGGTATTCTGGAACTGGAT 59.162 45.455 0.00 0.00 0.00 3.41
1730 1770 8.832735 TGACTTGGTTTCTTTATAATACTCCCT 58.167 33.333 0.00 0.00 0.00 4.20
1791 1834 5.826601 TCAAGTTGCATTGTGACTTTGTA 57.173 34.783 0.00 0.00 31.63 2.41
1809 1853 4.440826 TGTAAGTCCCTAACTTTTGCCA 57.559 40.909 0.00 0.00 46.26 4.92
1947 1991 5.186198 ACAGCATACTAGTGGGACAATTTC 58.814 41.667 5.39 0.00 44.16 2.17
1967 2011 1.956629 TTGCTGGTAGGCGGCTAGAC 61.957 60.000 20.35 15.56 34.52 2.59
1986 2030 1.151668 CGGGCAGTATAGATGCTTGC 58.848 55.000 9.17 0.00 43.35 4.01
1987 2031 1.270518 CGGGCAGTATAGATGCTTGCT 60.271 52.381 9.17 0.00 43.35 3.91
1988 2032 2.808202 CGGGCAGTATAGATGCTTGCTT 60.808 50.000 9.17 0.00 43.35 3.91
1989 2033 2.551459 GGGCAGTATAGATGCTTGCTTG 59.449 50.000 9.17 0.00 43.35 4.01
1999 2043 3.254166 AGATGCTTGCTTGGTTAACACTG 59.746 43.478 8.10 0.00 0.00 3.66
2035 2079 3.338110 AAAAGGGCCAAAGGGAAACTA 57.662 42.857 6.18 0.00 35.59 2.24
2089 2133 6.094464 TGCAGCTAACCATCATGCATATATTC 59.906 38.462 0.00 0.00 41.65 1.75
2116 2160 4.574599 AAGCTCAAGTTTACTGCTTTGG 57.425 40.909 0.00 0.00 40.51 3.28
2186 2230 1.202188 GCCAAGCGCAAGGAAGAATAC 60.202 52.381 20.65 0.00 37.47 1.89
2980 3025 6.596309 TGTTCTGTCTACTCACTTCATGAT 57.404 37.500 0.00 0.00 36.48 2.45
2991 3036 7.482169 ACTCACTTCATGATAACTCTGGTAA 57.518 36.000 0.00 0.00 36.48 2.85
3137 3182 4.787551 TGTGAACCTTGTTATTGGTCTGT 58.212 39.130 0.00 0.00 35.17 3.41
3481 3528 6.531594 CCAAAAAGTTCCAACTGAAGAGTTTC 59.468 38.462 0.00 0.00 40.68 2.78
3616 3663 3.442625 CCTGTATCGAGGTACACAACTCA 59.557 47.826 0.00 0.00 33.36 3.41
3960 4031 6.387465 TCGAGTATTCACGTGAGATTCTTTT 58.613 36.000 19.11 0.58 0.00 2.27
4187 4258 2.325583 TTGCGTATCATTCACCCCTC 57.674 50.000 0.00 0.00 0.00 4.30
4347 4419 5.604650 TGGAAAGAAATTTAATGTGGGTGGT 59.395 36.000 0.00 0.00 0.00 4.16
4699 4772 5.920840 GGAAGAATTTTGCTGTCCAGTAAAC 59.079 40.000 9.62 0.77 41.50 2.01
4797 4870 5.313280 TGTAAATGGTCCTTGGTTGTAGT 57.687 39.130 0.00 0.00 0.00 2.73
4806 4879 5.280317 GGTCCTTGGTTGTAGTGAAGGATTA 60.280 44.000 0.00 0.00 44.46 1.75
5123 5196 2.179865 CCCCTGGGATGTTATTTGGGAT 59.820 50.000 16.20 0.00 37.50 3.85
5149 5222 1.001378 GCGCTGCTGGGTAAATATTGG 60.001 52.381 0.00 0.00 0.00 3.16
5160 5233 7.361457 TGGGTAAATATTGGTTGTTTGTGAA 57.639 32.000 0.00 0.00 0.00 3.18
5212 5285 3.814316 GCCTCAAGTACCCCATGAACTTT 60.814 47.826 0.00 0.00 31.21 2.66
5344 5417 7.989741 ACAGCTAGAAGTATGCTATTTGTTCAT 59.010 33.333 0.00 0.00 35.05 2.57
5619 5693 1.667724 GAAATGGAGCGGTGACAGATG 59.332 52.381 0.00 0.00 0.00 2.90
5677 5751 5.624159 TGAAGAAGAGAATGAGCCTTCAAA 58.376 37.500 0.00 0.00 37.60 2.69
5684 5758 3.004734 AGAATGAGCCTTCAAACAAACGG 59.995 43.478 0.00 0.00 36.78 4.44
5740 5814 4.948847 CCTTGATCGACATGGTCATCTAA 58.051 43.478 0.00 0.00 38.51 2.10
5741 5815 5.359756 CCTTGATCGACATGGTCATCTAAA 58.640 41.667 0.00 0.00 38.51 1.85
5742 5816 5.235186 CCTTGATCGACATGGTCATCTAAAC 59.765 44.000 0.00 0.00 38.51 2.01
5743 5817 5.598416 TGATCGACATGGTCATCTAAACT 57.402 39.130 0.00 0.00 32.09 2.66
5744 5818 5.592054 TGATCGACATGGTCATCTAAACTC 58.408 41.667 0.00 0.00 32.09 3.01
5745 5819 5.360999 TGATCGACATGGTCATCTAAACTCT 59.639 40.000 0.00 0.00 32.09 3.24
5746 5820 6.546034 TGATCGACATGGTCATCTAAACTCTA 59.454 38.462 0.00 0.00 32.09 2.43
5893 5968 7.408236 TACATGTATGATGTGCCAGTTGATGG 61.408 42.308 0.08 0.00 41.48 3.51
6059 6142 3.542676 TATTGCCGGATCCCGCGT 61.543 61.111 18.46 12.71 46.86 6.01
6075 6158 2.570169 CGCGTGTGTGGATTGTTTTAG 58.430 47.619 0.00 0.00 0.00 1.85
6081 6164 6.378582 CGTGTGTGGATTGTTTTAGCTTTAT 58.621 36.000 0.00 0.00 0.00 1.40
6114 6198 5.104067 CCCCTAGTAGCTTAGGTTTTTGGAT 60.104 44.000 10.05 0.00 38.86 3.41
6126 6210 4.010349 GGTTTTTGGATCATTCGACCTCT 58.990 43.478 0.00 0.00 0.00 3.69
6127 6211 4.459337 GGTTTTTGGATCATTCGACCTCTT 59.541 41.667 0.00 0.00 0.00 2.85
6128 6212 5.393962 GTTTTTGGATCATTCGACCTCTTG 58.606 41.667 0.00 0.00 0.00 3.02
6129 6213 2.988010 TGGATCATTCGACCTCTTGG 57.012 50.000 0.00 0.00 39.83 3.61
6159 6244 5.854338 CGCGTGTGGATTGTTTTAACTTTAT 59.146 36.000 0.00 0.00 0.00 1.40
6188 6273 3.542648 GCCCCTAGTAGCTTAGGTTTTG 58.457 50.000 10.05 0.00 38.86 2.44
6194 6280 5.130477 CCTAGTAGCTTAGGTTTTGGGATCA 59.870 44.000 3.59 0.00 36.29 2.92
6197 6283 6.494059 AGTAGCTTAGGTTTTGGGATCATTT 58.506 36.000 0.00 0.00 0.00 2.32
6201 6287 5.624509 GCTTAGGTTTTGGGATCATTTGACC 60.625 44.000 0.00 0.00 0.00 4.02
6203 6289 4.492646 AGGTTTTGGGATCATTTGACCTT 58.507 39.130 0.00 0.00 32.63 3.50
6239 6328 5.390673 GGCGATGATGATGCTGAATAAAGAG 60.391 44.000 0.00 0.00 0.00 2.85
6256 6345 2.031120 AGAGGCTCTGGATTCTTCTCG 58.969 52.381 17.96 0.00 0.00 4.04
6273 6362 0.171231 TCGAGTGAGGCGATTGTCTG 59.829 55.000 0.00 0.00 32.09 3.51
6288 6378 2.912771 TGTCTGTTTGTTCGGTGATGT 58.087 42.857 0.00 0.00 0.00 3.06
6289 6379 3.275143 TGTCTGTTTGTTCGGTGATGTT 58.725 40.909 0.00 0.00 0.00 2.71
6293 6383 4.876679 TCTGTTTGTTCGGTGATGTTGTTA 59.123 37.500 0.00 0.00 0.00 2.41
6302 6392 5.789521 TCGGTGATGTTGTTAGAAATCAGA 58.210 37.500 0.00 0.00 30.00 3.27
6303 6393 6.227522 TCGGTGATGTTGTTAGAAATCAGAA 58.772 36.000 0.00 0.00 30.00 3.02
6350 6440 1.004745 GGTGTCATCCTTGTGGTGGAT 59.995 52.381 0.00 0.00 44.44 3.41
6358 6448 3.181329 TCCTTGTGGTGGATATGTGTCT 58.819 45.455 0.00 0.00 34.23 3.41
6403 6493 3.204827 GCTCCAACATCGGCGCAT 61.205 61.111 10.83 0.00 36.74 4.73
6404 6494 2.711311 CTCCAACATCGGCGCATG 59.289 61.111 10.83 8.11 0.00 4.06
6405 6495 2.823593 TCCAACATCGGCGCATGG 60.824 61.111 10.83 15.45 0.00 3.66
6406 6496 4.557605 CCAACATCGGCGCATGGC 62.558 66.667 10.83 0.00 42.51 4.40
6407 6497 3.813143 CAACATCGGCGCATGGCA 61.813 61.111 10.83 0.00 46.16 4.92
6408 6498 2.829914 AACATCGGCGCATGGCAT 60.830 55.556 10.83 0.00 46.16 4.40
6409 6499 3.128632 AACATCGGCGCATGGCATG 62.129 57.895 22.99 22.99 46.16 4.06
6456 6547 1.012086 CAGATTGTGGTCTGCATCGG 58.988 55.000 0.00 0.00 39.19 4.18
6457 6548 0.615331 AGATTGTGGTCTGCATCGGT 59.385 50.000 0.00 0.00 0.00 4.69
6458 6549 1.009829 GATTGTGGTCTGCATCGGTC 58.990 55.000 0.00 0.00 0.00 4.79
6459 6550 0.615331 ATTGTGGTCTGCATCGGTCT 59.385 50.000 0.00 0.00 0.00 3.85
6460 6551 0.320683 TTGTGGTCTGCATCGGTCTG 60.321 55.000 0.00 0.00 0.00 3.51
6461 6552 2.103042 GTGGTCTGCATCGGTCTGC 61.103 63.158 0.00 0.00 42.62 4.26
6483 6585 2.855660 TGACGACAACTGAAAGACGA 57.144 45.000 0.00 0.00 37.43 4.20
6521 6624 5.948742 TGTGGTTGATGGATGACAGTATA 57.051 39.130 0.00 0.00 0.00 1.47
6593 6931 4.922026 GCGTGTCCGGGGTGTTGT 62.922 66.667 0.00 0.00 33.68 3.32
6595 6933 2.826702 GTGTCCGGGGTGTTGTCT 59.173 61.111 0.00 0.00 0.00 3.41
6614 7377 5.361427 TGTCTTGGTCTAATTCGTTCAACA 58.639 37.500 0.00 0.00 0.00 3.33
6660 7423 0.039165 CCTTGAAGGTTCGCAAAGCC 60.039 55.000 2.25 0.00 33.23 4.35
6706 7469 0.389166 GCTCGAGTGAGAAGGTGGTG 60.389 60.000 15.13 0.00 45.57 4.17
6715 7480 3.003689 GTGAGAAGGTGGTGTGTCATTTG 59.996 47.826 0.00 0.00 0.00 2.32
6719 7484 4.466015 AGAAGGTGGTGTGTCATTTGTTTT 59.534 37.500 0.00 0.00 0.00 2.43
6720 7485 5.654650 AGAAGGTGGTGTGTCATTTGTTTTA 59.345 36.000 0.00 0.00 0.00 1.52
6728 7495 7.140048 GGTGTGTCATTTGTTTTATTTCGGTA 58.860 34.615 0.00 0.00 0.00 4.02
6750 7517 1.827344 CTGCTATGGTGGTGTCTGAGA 59.173 52.381 0.00 0.00 0.00 3.27
6766 7533 2.280592 GACAGGTGACGGGCGTTT 60.281 61.111 0.00 0.00 0.00 3.60
6797 7564 6.585389 ACTCTAAAACGTTCTGTTGTCTTC 57.415 37.500 0.00 0.00 40.84 2.87
6812 7914 7.768582 TCTGTTGTCTTCTCAGTTTTTCATGTA 59.231 33.333 0.00 0.00 0.00 2.29
6822 7924 8.429641 TCTCAGTTTTTCATGTAGGTCTTTACT 58.570 33.333 0.00 0.00 0.00 2.24
6830 7932 7.900782 TCATGTAGGTCTTTACTTAAGTTGC 57.099 36.000 14.49 0.00 35.28 4.17
6917 8019 6.628919 ATTTTACAAACGAAGGCTGTACTT 57.371 33.333 0.00 0.00 30.35 2.24
6919 8021 6.529463 TTTACAAACGAAGGCTGTACTTAC 57.471 37.500 0.00 0.00 30.35 2.34
6924 8026 2.813754 ACGAAGGCTGTACTTACGTGTA 59.186 45.455 0.00 0.00 34.98 2.90
6929 8031 5.902613 AGGCTGTACTTACGTGTATAACA 57.097 39.130 0.00 0.00 0.00 2.41
6943 8045 5.801531 TGTATAACACAACAGGACTCACT 57.198 39.130 0.00 0.00 32.95 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 0.457851 CGATGGAGGAGGTGTCTGAC 59.542 60.000 0.00 0.00 0.00 3.51
22 23 1.517832 GTGAGAGATGACCACCCCG 59.482 63.158 0.00 0.00 0.00 5.73
28 29 1.470632 CGCTGAAGGTGAGAGATGACC 60.471 57.143 0.00 0.00 0.00 4.02
57 58 1.596477 GGATAGAGGCTGCCTTGCG 60.596 63.158 24.26 0.00 31.76 4.85
88 89 4.790962 CGTCCAGCTGGCAGGCAT 62.791 66.667 28.91 0.00 34.44 4.40
129 130 1.884926 GGAGCCTTTCGATGGAGCG 60.885 63.158 8.90 0.00 0.00 5.03
147 152 4.987419 GCTCTAGAGCGACGTGAG 57.013 61.111 28.04 0.00 45.29 3.51
166 171 1.376086 CACCTCTGCCATGACCACA 59.624 57.895 0.00 0.00 0.00 4.17
188 193 5.416952 ACATCTGTTTCATTTCCTCATCCAC 59.583 40.000 0.00 0.00 0.00 4.02
189 194 5.416639 CACATCTGTTTCATTTCCTCATCCA 59.583 40.000 0.00 0.00 0.00 3.41
223 229 3.589881 GCATGCCAGGCACGATCC 61.590 66.667 19.10 0.00 43.04 3.36
240 246 3.059868 CAGCGTTGCTATTTATACGTGGG 60.060 47.826 0.00 0.00 36.40 4.61
300 307 1.202770 AGGCGGCTGACAAACTAACTT 60.203 47.619 12.25 0.00 0.00 2.66
313 320 2.290705 ACATTAAACAGGTAAGGCGGCT 60.291 45.455 5.25 5.25 0.00 5.52
322 329 6.767524 TTTGTCTGTCAACATTAAACAGGT 57.232 33.333 4.78 0.00 40.60 4.00
334 341 1.234821 GCCCGTCATTTGTCTGTCAA 58.765 50.000 0.00 0.00 0.00 3.18
335 342 0.107643 TGCCCGTCATTTGTCTGTCA 59.892 50.000 0.00 0.00 0.00 3.58
405 412 5.664457 TCGCATGTTAAATGTCAGAGAGAT 58.336 37.500 0.00 0.00 0.00 2.75
468 475 2.735444 CGGACGCAATCAGTCACTACAT 60.735 50.000 0.00 0.00 40.20 2.29
478 485 1.302112 TCCAAAGCGGACGCAATCA 60.302 52.632 19.48 0.00 44.88 2.57
511 518 1.403679 ACGCATCTCTACTCTCTGTGC 59.596 52.381 0.00 0.00 0.00 4.57
546 553 3.893763 CCATCTCTCGCGCTCCGT 61.894 66.667 5.56 0.00 38.35 4.69
547 554 2.890847 AAACCATCTCTCGCGCTCCG 62.891 60.000 5.56 0.00 38.61 4.63
550 557 0.037326 TCAAAACCATCTCTCGCGCT 60.037 50.000 5.56 0.00 0.00 5.92
553 560 1.734465 CCACTCAAAACCATCTCTCGC 59.266 52.381 0.00 0.00 0.00 5.03
563 570 1.602605 CCCCGGTCCCACTCAAAAC 60.603 63.158 0.00 0.00 0.00 2.43
642 649 1.670791 TATCCGAAATCCCGCAAACC 58.329 50.000 0.00 0.00 0.00 3.27
668 675 2.993899 GTCCCATCTATTTACGGATGCG 59.006 50.000 4.58 4.58 38.28 4.73
676 683 7.147958 TCCAATGTGATGTCCCATCTATTTA 57.852 36.000 5.87 0.00 0.00 1.40
680 687 4.202493 CCATCCAATGTGATGTCCCATCTA 60.202 45.833 5.87 0.00 40.43 1.98
691 698 4.006989 CGTCCTTTTACCATCCAATGTGA 58.993 43.478 0.00 0.00 0.00 3.58
694 701 5.160641 CAAACGTCCTTTTACCATCCAATG 58.839 41.667 0.00 0.00 0.00 2.82
699 706 3.365969 CCTGCAAACGTCCTTTTACCATC 60.366 47.826 0.00 0.00 0.00 3.51
704 711 1.681538 TGCCTGCAAACGTCCTTTTA 58.318 45.000 0.00 0.00 0.00 1.52
708 715 1.039856 AAATTGCCTGCAAACGTCCT 58.960 45.000 8.84 0.00 39.55 3.85
952 973 1.344458 GACGAGATGTGTGAGCAGTG 58.656 55.000 0.00 0.00 0.00 3.66
1071 1092 5.391950 CCACGGAATCCAACAGAAATTAGTG 60.392 44.000 0.00 0.00 0.00 2.74
1114 1135 2.276740 CCTCCACTTCCCCCATGC 59.723 66.667 0.00 0.00 0.00 4.06
1264 1285 6.944862 GTGCAGATTTAATCCCTAATCCAGAT 59.055 38.462 0.78 0.00 32.43 2.90
1429 1450 1.593265 CCAGCACCCAATTTGGAGC 59.407 57.895 17.24 18.38 40.96 4.70
1435 1456 1.606313 CGTTCCCCAGCACCCAATT 60.606 57.895 0.00 0.00 0.00 2.32
1538 1561 7.313646 GGAGGGCTAACAGAATTAAGAAAAAC 58.686 38.462 0.00 0.00 0.00 2.43
1608 1648 5.297029 GCTTAGTTGTTAGGGGCTTTGATAG 59.703 44.000 0.00 0.00 0.00 2.08
1633 1673 4.442706 CAGAATACCACGTAGGCAAAGAT 58.557 43.478 4.23 0.00 43.14 2.40
1758 1801 8.584157 TCACAATGCAACTTGAAACCTATTAAT 58.416 29.630 7.04 0.00 0.00 1.40
1760 1803 7.230510 AGTCACAATGCAACTTGAAACCTATTA 59.769 33.333 7.04 0.00 0.00 0.98
1763 1806 4.887071 AGTCACAATGCAACTTGAAACCTA 59.113 37.500 7.04 0.00 0.00 3.08
1764 1807 3.701040 AGTCACAATGCAACTTGAAACCT 59.299 39.130 7.04 0.00 0.00 3.50
1809 1853 7.002276 TGCATTCCATCATCATGTTTCTCTAT 58.998 34.615 0.00 0.00 0.00 1.98
1947 1991 1.227380 CTAGCCGCCTACCAGCAAG 60.227 63.158 0.00 0.00 0.00 4.01
1967 2011 1.151668 GCAAGCATCTATACTGCCCG 58.848 55.000 0.00 0.00 40.56 6.13
2025 2069 8.168058 AGTTTACAATGGTATGTAGTTTCCCTT 58.832 33.333 0.00 0.00 37.13 3.95
2035 2079 8.608598 AGTAACCCTAAGTTTACAATGGTATGT 58.391 33.333 0.00 0.00 40.05 2.29
2089 2133 4.757149 AGCAGTAAACTTGAGCTTTACAGG 59.243 41.667 7.74 0.00 36.80 4.00
2116 2160 5.178797 ACATATCTCTGTTGTGCACCTAAC 58.821 41.667 15.69 13.52 0.00 2.34
2186 2230 6.985188 TTCCTTTTATTCATCAGTTCCTCG 57.015 37.500 0.00 0.00 0.00 4.63
2976 3021 6.547510 GCCCAAGATTTTACCAGAGTTATCAT 59.452 38.462 0.00 0.00 0.00 2.45
2980 3025 5.249780 TGCCCAAGATTTTACCAGAGTTA 57.750 39.130 0.00 0.00 0.00 2.24
2991 3036 5.248020 TCCACAATTATGTTGCCCAAGATTT 59.752 36.000 0.00 0.00 37.82 2.17
3137 3182 8.434392 CCTATTTACATTAGTACTTTGGGCCTA 58.566 37.037 4.53 0.00 0.00 3.93
3243 3290 5.674933 AAGTAGGAGAAGAAAAACAAGCG 57.325 39.130 0.00 0.00 0.00 4.68
3330 3377 4.207955 TGTACAGCTGAGTCGAGGAATAT 58.792 43.478 23.35 0.00 0.00 1.28
3744 3815 7.487829 CAGCAAAAGCTTGTAACTGAAACTAAA 59.512 33.333 11.72 0.00 34.79 1.85
3960 4031 7.224297 AGAGTATTTGCACAGAAAGAAGGTAA 58.776 34.615 0.00 0.00 0.00 2.85
4187 4258 6.458342 GCGTGGAATTTGAGGAAAGTTATAGG 60.458 42.308 0.00 0.00 0.00 2.57
4347 4419 4.907269 TGAATAGGAGCAGACCATATTGGA 59.093 41.667 0.00 0.00 40.96 3.53
4768 4841 4.082125 CCAAGGACCATTTACAAGCTTCT 58.918 43.478 0.00 0.00 0.00 2.85
4797 4870 7.707624 ACTGCAAAATCATTCTAATCCTTCA 57.292 32.000 0.00 0.00 0.00 3.02
4806 4879 9.023962 TGGTCTAAATTACTGCAAAATCATTCT 57.976 29.630 0.00 0.00 0.00 2.40
5123 5196 0.467804 TTACCCAGCAGCGCATGATA 59.532 50.000 11.47 0.00 0.00 2.15
5160 5233 7.294017 ACTGAATGGAAGTTGTGATCAAAAT 57.706 32.000 0.61 0.00 35.20 1.82
5270 5343 2.049063 GAGTCACGCGGCTGTTCT 60.049 61.111 12.47 4.10 0.00 3.01
5344 5417 5.950544 AGCATACAAGGGACAGTGTAATA 57.049 39.130 0.00 0.00 35.34 0.98
5351 5424 4.333649 CACATACAAGCATACAAGGGACAG 59.666 45.833 0.00 0.00 0.00 3.51
5395 5468 6.433716 TGCCTATGATGAAAACACAAATGAGA 59.566 34.615 0.00 0.00 0.00 3.27
5574 5648 0.471191 TGGTGGCTCATAGCTCCATG 59.529 55.000 0.00 0.00 41.99 3.66
5585 5659 1.753073 CCATTTCCATCTTGGTGGCTC 59.247 52.381 0.00 0.00 39.03 4.70
5619 5693 1.759445 TCCAGTATCTGAAGCTGGCTC 59.241 52.381 19.67 0.00 46.82 4.70
5677 5751 0.102300 GCCAGTTTTCTGCCGTTTGT 59.898 50.000 0.00 0.00 45.76 2.83
5684 5758 0.109597 CACCATCGCCAGTTTTCTGC 60.110 55.000 0.00 0.00 45.76 4.26
5741 5815 9.931210 CAAGATTAACGAACAAAAGTTTAGAGT 57.069 29.630 0.00 0.00 0.00 3.24
5791 5865 7.880195 GGTAATATCAATAGTCTGTTGGCTCAT 59.120 37.037 9.22 0.00 0.00 2.90
5795 5869 7.328737 CGTAGGTAATATCAATAGTCTGTTGGC 59.671 40.741 9.22 0.00 0.00 4.52
5893 5968 2.160417 GCACCTGTCACAGCTAAATCAC 59.840 50.000 0.00 0.00 0.00 3.06
5982 6061 1.763770 CCACAGGGTTGGCTCTCTT 59.236 57.895 0.00 0.00 0.00 2.85
5983 6062 3.488423 CCACAGGGTTGGCTCTCT 58.512 61.111 0.00 0.00 0.00 3.10
6029 6112 1.688811 GCAATACCCCTCACCACCA 59.311 57.895 0.00 0.00 0.00 4.17
6059 6142 7.283625 ACATAAAGCTAAAACAATCCACACA 57.716 32.000 0.00 0.00 0.00 3.72
6075 6158 3.391626 ACTAGGGGCCTAGAACATAAAGC 59.608 47.826 2.83 0.00 46.56 3.51
6081 6164 1.574339 AGCTACTAGGGGCCTAGAACA 59.426 52.381 2.83 0.00 46.56 3.18
6126 6210 3.943034 CCACACGCGCGAAACCAA 61.943 61.111 39.36 0.00 0.00 3.67
6127 6211 4.893601 TCCACACGCGCGAAACCA 62.894 61.111 39.36 14.31 0.00 3.67
6128 6212 2.961669 AATCCACACGCGCGAAACC 61.962 57.895 39.36 0.00 0.00 3.27
6129 6213 1.792057 CAATCCACACGCGCGAAAC 60.792 57.895 39.36 0.00 0.00 2.78
6130 6214 1.777030 AACAATCCACACGCGCGAAA 61.777 50.000 39.36 16.42 0.00 3.46
6131 6215 1.777030 AAACAATCCACACGCGCGAA 61.777 50.000 39.36 16.05 0.00 4.70
6132 6216 1.777030 AAAACAATCCACACGCGCGA 61.777 50.000 39.36 14.91 0.00 5.87
6159 6244 2.841795 AGCTACTAGGGGCCTAAAACA 58.158 47.619 0.84 0.00 0.00 2.83
6188 6273 4.890158 AACCAAAAGGTCAAATGATCCC 57.110 40.909 0.00 0.00 0.00 3.85
6194 6280 2.544903 CGCCGAAACCAAAAGGTCAAAT 60.545 45.455 0.00 0.00 0.00 2.32
6197 6283 1.448922 CCGCCGAAACCAAAAGGTCA 61.449 55.000 0.00 0.00 0.00 4.02
6201 6287 2.428403 CGCCGCCGAAACCAAAAG 60.428 61.111 0.00 0.00 36.29 2.27
6239 6328 1.754226 ACTCGAGAAGAATCCAGAGCC 59.246 52.381 21.68 0.00 34.68 4.70
6256 6345 2.086054 AACAGACAATCGCCTCACTC 57.914 50.000 0.00 0.00 0.00 3.51
6273 6362 5.412526 TCTAACAACATCACCGAACAAAC 57.587 39.130 0.00 0.00 0.00 2.93
6288 6378 7.077605 CGCTTGAACATTCTGATTTCTAACAA 58.922 34.615 0.00 0.00 0.00 2.83
6289 6379 6.348458 CCGCTTGAACATTCTGATTTCTAACA 60.348 38.462 0.00 0.00 0.00 2.41
6293 6383 3.441572 CCCGCTTGAACATTCTGATTTCT 59.558 43.478 0.00 0.00 0.00 2.52
6302 6392 2.094675 CAAGATCCCCGCTTGAACATT 58.905 47.619 0.00 0.00 44.16 2.71
6303 6393 1.004745 ACAAGATCCCCGCTTGAACAT 59.995 47.619 10.00 0.00 44.16 2.71
6350 6440 2.029623 GGTAGAGCCCGAAGACACATA 58.970 52.381 0.00 0.00 0.00 2.29
6403 6493 1.998444 CTACCTCCCATGCCATGCCA 61.998 60.000 0.00 0.00 0.00 4.92
6404 6494 1.228367 CTACCTCCCATGCCATGCC 60.228 63.158 0.00 0.00 0.00 4.40
6405 6495 0.536006 GACTACCTCCCATGCCATGC 60.536 60.000 0.00 0.00 0.00 4.06
6406 6496 0.109342 GGACTACCTCCCATGCCATG 59.891 60.000 0.00 0.00 31.83 3.66
6407 6497 0.327480 TGGACTACCTCCCATGCCAT 60.327 55.000 0.00 0.00 38.49 4.40
6408 6498 0.982852 CTGGACTACCTCCCATGCCA 60.983 60.000 0.00 0.00 38.49 4.92
6409 6499 1.700042 CCTGGACTACCTCCCATGCC 61.700 65.000 0.00 0.00 38.49 4.40
6412 6502 0.399233 GCTCCTGGACTACCTCCCAT 60.399 60.000 0.00 0.00 38.49 4.00
6453 6544 0.032815 TTGTCGTCAATGCAGACCGA 59.967 50.000 0.00 0.00 35.07 4.69
6454 6545 0.163788 GTTGTCGTCAATGCAGACCG 59.836 55.000 0.00 0.00 35.92 4.79
6455 6546 1.195448 CAGTTGTCGTCAATGCAGACC 59.805 52.381 0.00 0.00 35.92 3.85
6456 6547 2.135139 TCAGTTGTCGTCAATGCAGAC 58.865 47.619 0.00 0.00 35.92 3.51
6457 6548 2.524569 TCAGTTGTCGTCAATGCAGA 57.475 45.000 0.00 0.00 35.92 4.26
6458 6549 3.248363 TCTTTCAGTTGTCGTCAATGCAG 59.752 43.478 0.00 0.14 35.92 4.41
6459 6550 3.002246 GTCTTTCAGTTGTCGTCAATGCA 59.998 43.478 0.00 0.00 35.92 3.96
6460 6551 3.545633 GTCTTTCAGTTGTCGTCAATGC 58.454 45.455 0.00 0.00 35.92 3.56
6461 6552 3.489416 TCGTCTTTCAGTTGTCGTCAATG 59.511 43.478 0.00 0.00 35.92 2.82
6462 6553 3.713288 TCGTCTTTCAGTTGTCGTCAAT 58.287 40.909 0.00 0.00 35.92 2.57
6483 6585 2.554893 ACCACAAACTCAACACACGTTT 59.445 40.909 0.00 0.00 31.13 3.60
6593 6931 5.818336 TGTTGTTGAACGAATTAGACCAAGA 59.182 36.000 0.00 0.00 34.49 3.02
6595 6933 6.438259 TTGTTGTTGAACGAATTAGACCAA 57.562 33.333 0.00 0.00 34.49 3.67
6614 7377 2.807392 CGCCAAAAATGAAGCCATTGTT 59.193 40.909 0.00 0.00 41.84 2.83
6660 7423 1.506493 GGCTCCATCACTGATAAGCG 58.494 55.000 14.79 0.00 33.56 4.68
6706 7469 7.060633 CAGCTACCGAAATAAAACAAATGACAC 59.939 37.037 0.00 0.00 0.00 3.67
6715 7480 5.296035 ACCATAGCAGCTACCGAAATAAAAC 59.704 40.000 3.59 0.00 0.00 2.43
6719 7484 3.244078 CCACCATAGCAGCTACCGAAATA 60.244 47.826 3.59 0.00 0.00 1.40
6720 7485 2.485479 CCACCATAGCAGCTACCGAAAT 60.485 50.000 3.59 0.00 0.00 2.17
6728 7495 0.251354 CAGACACCACCATAGCAGCT 59.749 55.000 0.00 0.00 0.00 4.24
6750 7517 2.590575 CAAACGCCCGTCACCTGT 60.591 61.111 0.00 0.00 0.00 4.00
6766 7533 5.640357 ACAGAACGTTTTAGAGTTTGACACA 59.360 36.000 0.46 0.00 0.00 3.72
6797 7564 8.608844 AGTAAAGACCTACATGAAAAACTGAG 57.391 34.615 0.00 0.00 0.00 3.35
6812 7914 8.232913 TCAAAATGCAACTTAAGTAAAGACCT 57.767 30.769 8.92 0.00 38.67 3.85
6882 7984 4.323336 CGTTTGTAAAATAGCACATGCCAC 59.677 41.667 0.00 0.00 43.38 5.01
6895 7997 6.292274 CGTAAGTACAGCCTTCGTTTGTAAAA 60.292 38.462 0.00 0.00 0.00 1.52
6896 7998 5.175491 CGTAAGTACAGCCTTCGTTTGTAAA 59.825 40.000 0.00 0.00 0.00 2.01
6897 7999 4.681025 CGTAAGTACAGCCTTCGTTTGTAA 59.319 41.667 0.00 0.00 0.00 2.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.