Multiple sequence alignment - TraesCS4A01G096000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G096000 chr4A 100.000 3633 0 0 1 3633 104092815 104096447 0.000000e+00 6709.0
1 TraesCS4A01G096000 chr4B 92.286 3215 148 48 495 3631 445846041 445842849 0.000000e+00 4471.0
2 TraesCS4A01G096000 chr4B 92.453 53 2 1 2863 2915 66169501 66169551 1.400000e-09 75.0
3 TraesCS4A01G096000 chr4D 96.853 2447 55 6 477 2919 360765466 360763038 0.000000e+00 4072.0
4 TraesCS4A01G096000 chr4D 91.348 601 20 5 2919 3488 360762935 360762336 0.000000e+00 793.0
5 TraesCS4A01G096000 chr4D 93.396 106 7 0 3524 3629 360761916 360761811 1.350000e-34 158.0
6 TraesCS4A01G096000 chr2D 89.474 57 6 0 2863 2919 564920762 564920706 5.030000e-09 73.1
7 TraesCS4A01G096000 chr2A 94.595 37 2 0 2880 2916 101402044 101402080 1.410000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G096000 chr4A 104092815 104096447 3632 False 6709.000000 6709 100.000000 1 3633 1 chr4A.!!$F1 3632
1 TraesCS4A01G096000 chr4B 445842849 445846041 3192 True 4471.000000 4471 92.286000 495 3631 1 chr4B.!!$R1 3136
2 TraesCS4A01G096000 chr4D 360761811 360765466 3655 True 1674.333333 4072 93.865667 477 3629 3 chr4D.!!$R1 3152

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
113 114 0.036010 AGATTCGGTGCCCTTGTCAG 60.036 55.000 0.00 0.0 0.00 3.51 F
467 468 0.039527 TCGATACGGCCATCATCACG 60.040 55.000 2.24 0.0 0.00 4.35 F
470 471 0.249868 ATACGGCCATCATCACGTGG 60.250 55.000 17.00 0.0 40.12 4.94 F
784 786 0.911053 AGGGTTATCCGGGCGTTTTA 59.089 50.000 0.00 0.0 41.52 1.52 F
797 799 1.664333 GTTTTACGCGTCGGGACCA 60.664 57.895 18.63 0.0 0.00 4.02 F
1829 1866 2.151202 GCTCTCAGAGCGCTAGATACT 58.849 52.381 11.89 0.0 45.85 2.12 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1829 1866 1.408683 GGAGCATGTGGGCTATTGTCA 60.409 52.381 0.00 0.00 45.99 3.58 R
2392 2430 0.694771 AGTCCAGACCATGCATGTGT 59.305 50.000 24.58 20.65 0.00 3.72 R
2426 2464 4.749245 AATACTGAAAACAAGGACTGCG 57.251 40.909 0.00 0.00 0.00 5.18 R
2509 2547 1.202521 ACACTGCACGTCAACTCATCA 60.203 47.619 0.00 0.00 0.00 3.07 R
2548 2586 2.398498 CTTCTCAATAGATCACCCGCG 58.602 52.381 0.00 0.00 0.00 6.46 R
3484 3661 0.107456 AGGCTGTTGGACACACTCTG 59.893 55.000 0.00 0.00 0.00 3.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 7.934457 ACTTGGTATTTCATCATCAACTATGC 58.066 34.615 0.00 0.00 35.38 3.14
54 55 7.557358 ACTTGGTATTTCATCATCAACTATGCA 59.443 33.333 0.00 0.00 35.38 3.96
55 56 8.467963 TTGGTATTTCATCATCAACTATGCAT 57.532 30.769 3.79 3.79 35.38 3.96
56 57 7.878036 TGGTATTTCATCATCAACTATGCATG 58.122 34.615 10.16 1.82 35.38 4.06
57 58 6.805271 GGTATTTCATCATCAACTATGCATGC 59.195 38.462 11.82 11.82 35.38 4.06
58 59 4.841443 TTCATCATCAACTATGCATGCC 57.159 40.909 16.68 0.00 35.38 4.40
59 60 3.822940 TCATCATCAACTATGCATGCCA 58.177 40.909 16.68 3.52 35.38 4.92
60 61 3.818773 TCATCATCAACTATGCATGCCAG 59.181 43.478 16.68 14.72 35.38 4.85
61 62 1.951602 TCATCAACTATGCATGCCAGC 59.048 47.619 16.68 0.00 35.38 4.85
68 69 4.246053 TGCATGCCAGCAATCGAT 57.754 50.000 16.68 0.00 42.46 3.59
69 70 2.027325 TGCATGCCAGCAATCGATC 58.973 52.632 16.68 0.00 42.46 3.69
70 71 0.464916 TGCATGCCAGCAATCGATCT 60.465 50.000 16.68 0.00 42.46 2.75
71 72 1.202675 TGCATGCCAGCAATCGATCTA 60.203 47.619 16.68 0.00 42.46 1.98
72 73 1.463831 GCATGCCAGCAATCGATCTAG 59.536 52.381 6.36 0.00 0.00 2.43
73 74 2.074576 CATGCCAGCAATCGATCTAGG 58.925 52.381 0.00 0.00 0.00 3.02
74 75 0.394192 TGCCAGCAATCGATCTAGGG 59.606 55.000 0.00 0.00 0.00 3.53
75 76 0.681733 GCCAGCAATCGATCTAGGGA 59.318 55.000 0.00 0.00 0.00 4.20
76 77 1.277557 GCCAGCAATCGATCTAGGGAT 59.722 52.381 0.00 0.00 34.45 3.85
77 78 2.289945 GCCAGCAATCGATCTAGGGATT 60.290 50.000 0.00 0.00 33.31 3.01
79 80 3.332919 CAGCAATCGATCTAGGGATTGG 58.667 50.000 22.23 11.00 46.01 3.16
80 81 2.079925 GCAATCGATCTAGGGATTGGC 58.920 52.381 22.23 15.33 46.01 4.52
81 82 2.550855 GCAATCGATCTAGGGATTGGCA 60.551 50.000 22.23 0.00 46.01 4.92
82 83 3.070018 CAATCGATCTAGGGATTGGCAC 58.930 50.000 17.28 0.00 43.55 5.01
83 84 1.788229 TCGATCTAGGGATTGGCACA 58.212 50.000 0.00 0.00 34.82 4.57
84 85 2.329267 TCGATCTAGGGATTGGCACAT 58.671 47.619 0.00 0.00 39.30 3.21
85 86 3.506398 TCGATCTAGGGATTGGCACATA 58.494 45.455 0.00 0.00 39.30 2.29
86 87 3.901222 TCGATCTAGGGATTGGCACATAA 59.099 43.478 0.00 0.00 39.30 1.90
87 88 4.346709 TCGATCTAGGGATTGGCACATAAA 59.653 41.667 0.00 0.00 39.30 1.40
88 89 4.692625 CGATCTAGGGATTGGCACATAAAG 59.307 45.833 0.00 0.00 39.30 1.85
89 90 3.820557 TCTAGGGATTGGCACATAAAGC 58.179 45.455 0.00 0.00 39.30 3.51
90 91 2.530460 AGGGATTGGCACATAAAGCA 57.470 45.000 0.00 0.00 39.30 3.91
91 92 2.102578 AGGGATTGGCACATAAAGCAC 58.897 47.619 0.00 0.00 39.30 4.40
92 93 1.824230 GGGATTGGCACATAAAGCACA 59.176 47.619 0.00 0.00 39.30 4.57
93 94 2.233431 GGGATTGGCACATAAAGCACAA 59.767 45.455 0.00 0.00 39.30 3.33
94 95 3.306641 GGGATTGGCACATAAAGCACAAA 60.307 43.478 0.00 0.00 39.30 2.83
95 96 3.928375 GGATTGGCACATAAAGCACAAAG 59.072 43.478 0.00 0.00 39.30 2.77
96 97 4.321899 GGATTGGCACATAAAGCACAAAGA 60.322 41.667 0.00 0.00 39.30 2.52
97 98 4.870123 TTGGCACATAAAGCACAAAGAT 57.130 36.364 0.00 0.00 39.30 2.40
98 99 4.870123 TGGCACATAAAGCACAAAGATT 57.130 36.364 0.00 0.00 0.00 2.40
99 100 4.808558 TGGCACATAAAGCACAAAGATTC 58.191 39.130 0.00 0.00 0.00 2.52
100 101 3.853671 GGCACATAAAGCACAAAGATTCG 59.146 43.478 0.00 0.00 0.00 3.34
101 102 3.853671 GCACATAAAGCACAAAGATTCGG 59.146 43.478 0.00 0.00 0.00 4.30
102 103 4.615912 GCACATAAAGCACAAAGATTCGGT 60.616 41.667 0.00 0.00 0.00 4.69
103 104 4.853196 CACATAAAGCACAAAGATTCGGTG 59.147 41.667 0.00 0.00 35.68 4.94
107 108 2.946947 CACAAAGATTCGGTGCCCT 58.053 52.632 0.00 0.00 0.00 5.19
108 109 1.247567 CACAAAGATTCGGTGCCCTT 58.752 50.000 0.00 0.00 0.00 3.95
109 110 1.068333 CACAAAGATTCGGTGCCCTTG 60.068 52.381 0.00 0.00 0.00 3.61
110 111 1.247567 CAAAGATTCGGTGCCCTTGT 58.752 50.000 0.00 0.00 0.00 3.16
111 112 1.200020 CAAAGATTCGGTGCCCTTGTC 59.800 52.381 0.00 0.00 0.00 3.18
112 113 0.400213 AAGATTCGGTGCCCTTGTCA 59.600 50.000 0.00 0.00 0.00 3.58
113 114 0.036010 AGATTCGGTGCCCTTGTCAG 60.036 55.000 0.00 0.00 0.00 3.51
114 115 1.002134 ATTCGGTGCCCTTGTCAGG 60.002 57.895 0.00 0.00 40.45 3.86
115 116 1.488705 ATTCGGTGCCCTTGTCAGGA 61.489 55.000 0.00 0.00 44.19 3.86
116 117 2.358737 CGGTGCCCTTGTCAGGAC 60.359 66.667 0.00 0.00 44.19 3.85
117 118 2.358737 GGTGCCCTTGTCAGGACG 60.359 66.667 0.00 0.00 44.19 4.79
118 119 2.358737 GTGCCCTTGTCAGGACGG 60.359 66.667 0.00 0.00 44.19 4.79
119 120 3.636231 TGCCCTTGTCAGGACGGG 61.636 66.667 7.74 7.74 44.19 5.28
120 121 4.410400 GCCCTTGTCAGGACGGGG 62.410 72.222 19.46 19.46 44.19 5.73
121 122 4.410400 CCCTTGTCAGGACGGGGC 62.410 72.222 14.37 0.00 44.19 5.80
122 123 4.410400 CCTTGTCAGGACGGGGCC 62.410 72.222 0.00 0.00 44.19 5.80
123 124 4.760047 CTTGTCAGGACGGGGCCG 62.760 72.222 0.00 0.00 46.03 6.13
137 138 4.191485 GCCGCGACGTCGATTGTG 62.191 66.667 39.74 21.91 43.02 3.33
138 139 2.803670 CCGCGACGTCGATTGTGT 60.804 61.111 39.74 0.00 43.02 3.72
139 140 2.681666 CGCGACGTCGATTGTGTC 59.318 61.111 39.74 19.49 43.02 3.67
140 141 2.078341 CGCGACGTCGATTGTGTCA 61.078 57.895 39.74 0.00 43.02 3.58
141 142 1.696644 GCGACGTCGATTGTGTCAG 59.303 57.895 39.74 8.77 43.02 3.51
142 143 0.728129 GCGACGTCGATTGTGTCAGA 60.728 55.000 39.74 0.00 43.02 3.27
143 144 1.681825 CGACGTCGATTGTGTCAGAA 58.318 50.000 33.35 0.00 43.02 3.02
144 145 2.048498 CGACGTCGATTGTGTCAGAAA 58.952 47.619 33.35 0.00 43.02 2.52
145 146 2.661675 CGACGTCGATTGTGTCAGAAAT 59.338 45.455 33.35 0.00 43.02 2.17
146 147 3.849708 CGACGTCGATTGTGTCAGAAATA 59.150 43.478 33.35 0.00 43.02 1.40
147 148 4.322539 CGACGTCGATTGTGTCAGAAATAA 59.677 41.667 33.35 0.00 43.02 1.40
148 149 5.497126 CGACGTCGATTGTGTCAGAAATAAG 60.497 44.000 33.35 0.00 43.02 1.73
149 150 5.466819 ACGTCGATTGTGTCAGAAATAAGA 58.533 37.500 0.00 0.00 0.00 2.10
150 151 5.924254 ACGTCGATTGTGTCAGAAATAAGAA 59.076 36.000 0.00 0.00 0.00 2.52
151 152 6.089551 ACGTCGATTGTGTCAGAAATAAGAAG 59.910 38.462 0.00 0.00 0.00 2.85
152 153 6.454318 CGTCGATTGTGTCAGAAATAAGAAGG 60.454 42.308 0.00 0.00 0.00 3.46
153 154 5.874810 TCGATTGTGTCAGAAATAAGAAGGG 59.125 40.000 0.00 0.00 0.00 3.95
154 155 5.065218 CGATTGTGTCAGAAATAAGAAGGGG 59.935 44.000 0.00 0.00 0.00 4.79
155 156 5.576563 TTGTGTCAGAAATAAGAAGGGGA 57.423 39.130 0.00 0.00 0.00 4.81
156 157 5.779241 TGTGTCAGAAATAAGAAGGGGAT 57.221 39.130 0.00 0.00 0.00 3.85
157 158 6.884472 TGTGTCAGAAATAAGAAGGGGATA 57.116 37.500 0.00 0.00 0.00 2.59
158 159 7.265599 TGTGTCAGAAATAAGAAGGGGATAA 57.734 36.000 0.00 0.00 0.00 1.75
159 160 7.110155 TGTGTCAGAAATAAGAAGGGGATAAC 58.890 38.462 0.00 0.00 0.00 1.89
160 161 7.110155 GTGTCAGAAATAAGAAGGGGATAACA 58.890 38.462 0.00 0.00 0.00 2.41
161 162 7.610305 GTGTCAGAAATAAGAAGGGGATAACAA 59.390 37.037 0.00 0.00 0.00 2.83
162 163 8.167392 TGTCAGAAATAAGAAGGGGATAACAAA 58.833 33.333 0.00 0.00 0.00 2.83
163 164 8.459635 GTCAGAAATAAGAAGGGGATAACAAAC 58.540 37.037 0.00 0.00 0.00 2.93
164 165 8.167392 TCAGAAATAAGAAGGGGATAACAAACA 58.833 33.333 0.00 0.00 0.00 2.83
165 166 8.244113 CAGAAATAAGAAGGGGATAACAAACAC 58.756 37.037 0.00 0.00 0.00 3.32
166 167 7.947890 AGAAATAAGAAGGGGATAACAAACACA 59.052 33.333 0.00 0.00 0.00 3.72
167 168 7.462571 AATAAGAAGGGGATAACAAACACAC 57.537 36.000 0.00 0.00 0.00 3.82
168 169 3.408634 AGAAGGGGATAACAAACACACG 58.591 45.455 0.00 0.00 0.00 4.49
169 170 1.530323 AGGGGATAACAAACACACGC 58.470 50.000 0.00 0.00 0.00 5.34
170 171 0.524414 GGGGATAACAAACACACGCC 59.476 55.000 0.00 0.00 0.00 5.68
171 172 1.240256 GGGATAACAAACACACGCCA 58.760 50.000 0.00 0.00 0.00 5.69
172 173 1.199097 GGGATAACAAACACACGCCAG 59.801 52.381 0.00 0.00 0.00 4.85
173 174 1.401018 GGATAACAAACACACGCCAGC 60.401 52.381 0.00 0.00 0.00 4.85
174 175 0.237235 ATAACAAACACACGCCAGCG 59.763 50.000 11.05 11.05 46.03 5.18
186 187 4.082523 CCAGCGTCCACCCGTGAT 62.083 66.667 0.00 0.00 0.00 3.06
187 188 2.717044 CCAGCGTCCACCCGTGATA 61.717 63.158 0.00 0.00 0.00 2.15
188 189 1.226974 CAGCGTCCACCCGTGATAG 60.227 63.158 0.00 0.00 0.00 2.08
189 190 2.585247 GCGTCCACCCGTGATAGC 60.585 66.667 0.00 0.00 0.00 2.97
190 191 2.278596 CGTCCACCCGTGATAGCG 60.279 66.667 0.00 0.00 0.00 4.26
191 192 2.767445 CGTCCACCCGTGATAGCGA 61.767 63.158 0.00 0.00 0.00 4.93
192 193 1.740285 GTCCACCCGTGATAGCGAT 59.260 57.895 0.00 0.00 0.00 4.58
193 194 0.597637 GTCCACCCGTGATAGCGATG 60.598 60.000 0.00 0.00 0.00 3.84
194 195 1.300931 CCACCCGTGATAGCGATGG 60.301 63.158 0.00 0.00 0.00 3.51
195 196 1.441729 CACCCGTGATAGCGATGGT 59.558 57.895 0.00 0.00 0.00 3.55
196 197 0.875908 CACCCGTGATAGCGATGGTG 60.876 60.000 0.69 0.69 37.65 4.17
197 198 1.040893 ACCCGTGATAGCGATGGTGA 61.041 55.000 0.00 0.00 0.00 4.02
198 199 0.597637 CCCGTGATAGCGATGGTGAC 60.598 60.000 0.00 0.00 0.00 3.67
199 200 0.385751 CCGTGATAGCGATGGTGACT 59.614 55.000 0.00 0.00 0.00 3.41
200 201 1.202417 CCGTGATAGCGATGGTGACTT 60.202 52.381 0.00 0.00 0.00 3.01
201 202 2.034179 CCGTGATAGCGATGGTGACTTA 59.966 50.000 0.00 0.00 0.00 2.24
202 203 3.043586 CGTGATAGCGATGGTGACTTAC 58.956 50.000 0.00 0.00 0.00 2.34
210 211 4.876652 GGTGACTTACCGACGTCC 57.123 61.111 10.58 0.00 40.26 4.79
211 212 1.959085 GGTGACTTACCGACGTCCA 59.041 57.895 10.58 0.00 40.26 4.02
212 213 0.314935 GGTGACTTACCGACGTCCAA 59.685 55.000 10.58 0.83 40.26 3.53
213 214 1.412387 GTGACTTACCGACGTCCAAC 58.588 55.000 10.58 0.00 0.00 3.77
214 215 0.314935 TGACTTACCGACGTCCAACC 59.685 55.000 10.58 0.00 0.00 3.77
215 216 0.314935 GACTTACCGACGTCCAACCA 59.685 55.000 10.58 0.00 0.00 3.67
216 217 0.971386 ACTTACCGACGTCCAACCAT 59.029 50.000 10.58 0.00 0.00 3.55
217 218 1.337447 ACTTACCGACGTCCAACCATG 60.337 52.381 10.58 0.00 0.00 3.66
226 227 3.430862 CCAACCATGGTGCCGACG 61.431 66.667 20.60 2.99 42.18 5.12
227 228 3.430862 CAACCATGGTGCCGACGG 61.431 66.667 20.60 10.29 0.00 4.79
228 229 3.632080 AACCATGGTGCCGACGGA 61.632 61.111 20.60 0.00 0.00 4.69
229 230 3.605749 AACCATGGTGCCGACGGAG 62.606 63.158 20.60 0.00 0.00 4.63
230 231 3.770040 CCATGGTGCCGACGGAGA 61.770 66.667 20.50 0.00 0.00 3.71
231 232 2.509336 CATGGTGCCGACGGAGAC 60.509 66.667 20.50 12.99 0.00 3.36
232 233 2.680352 ATGGTGCCGACGGAGACT 60.680 61.111 20.50 0.00 0.00 3.24
233 234 2.711922 ATGGTGCCGACGGAGACTC 61.712 63.158 20.50 7.85 0.00 3.36
234 235 4.477975 GGTGCCGACGGAGACTCG 62.478 72.222 20.50 0.00 0.00 4.18
243 244 2.179517 GGAGACTCGCCGACAGTG 59.820 66.667 0.00 0.00 0.00 3.66
244 245 2.179517 GAGACTCGCCGACAGTGG 59.820 66.667 0.00 0.00 0.00 4.00
245 246 2.282251 AGACTCGCCGACAGTGGA 60.282 61.111 0.00 0.00 0.00 4.02
246 247 1.863662 GAGACTCGCCGACAGTGGAA 61.864 60.000 0.00 0.00 0.00 3.53
247 248 1.444553 GACTCGCCGACAGTGGAAG 60.445 63.158 0.00 0.00 0.00 3.46
248 249 2.125912 CTCGCCGACAGTGGAAGG 60.126 66.667 0.00 0.00 0.00 3.46
249 250 3.649277 CTCGCCGACAGTGGAAGGG 62.649 68.421 0.00 0.00 0.00 3.95
250 251 4.003788 CGCCGACAGTGGAAGGGT 62.004 66.667 0.00 0.00 0.00 4.34
251 252 2.358737 GCCGACAGTGGAAGGGTG 60.359 66.667 0.00 0.00 0.00 4.61
252 253 2.347490 CCGACAGTGGAAGGGTGG 59.653 66.667 0.00 0.00 0.00 4.61
253 254 2.358737 CGACAGTGGAAGGGTGGC 60.359 66.667 0.00 0.00 0.00 5.01
254 255 2.358737 GACAGTGGAAGGGTGGCG 60.359 66.667 0.00 0.00 0.00 5.69
255 256 3.168528 ACAGTGGAAGGGTGGCGT 61.169 61.111 0.00 0.00 0.00 5.68
256 257 2.669569 CAGTGGAAGGGTGGCGTG 60.670 66.667 0.00 0.00 0.00 5.34
257 258 3.168528 AGTGGAAGGGTGGCGTGT 61.169 61.111 0.00 0.00 0.00 4.49
258 259 1.839747 AGTGGAAGGGTGGCGTGTA 60.840 57.895 0.00 0.00 0.00 2.90
259 260 1.071814 GTGGAAGGGTGGCGTGTAA 59.928 57.895 0.00 0.00 0.00 2.41
260 261 0.953960 GTGGAAGGGTGGCGTGTAAG 60.954 60.000 0.00 0.00 0.00 2.34
261 262 1.122632 TGGAAGGGTGGCGTGTAAGA 61.123 55.000 0.00 0.00 0.00 2.10
262 263 0.391263 GGAAGGGTGGCGTGTAAGAG 60.391 60.000 0.00 0.00 0.00 2.85
263 264 0.606604 GAAGGGTGGCGTGTAAGAGA 59.393 55.000 0.00 0.00 0.00 3.10
264 265 1.001633 GAAGGGTGGCGTGTAAGAGAA 59.998 52.381 0.00 0.00 0.00 2.87
265 266 1.053424 AGGGTGGCGTGTAAGAGAAA 58.947 50.000 0.00 0.00 0.00 2.52
266 267 1.418637 AGGGTGGCGTGTAAGAGAAAA 59.581 47.619 0.00 0.00 0.00 2.29
267 268 2.039879 AGGGTGGCGTGTAAGAGAAAAT 59.960 45.455 0.00 0.00 0.00 1.82
268 269 3.262405 AGGGTGGCGTGTAAGAGAAAATA 59.738 43.478 0.00 0.00 0.00 1.40
269 270 4.080526 AGGGTGGCGTGTAAGAGAAAATAT 60.081 41.667 0.00 0.00 0.00 1.28
270 271 4.272748 GGGTGGCGTGTAAGAGAAAATATC 59.727 45.833 0.00 0.00 0.00 1.63
271 272 5.116882 GGTGGCGTGTAAGAGAAAATATCT 58.883 41.667 0.00 0.00 42.61 1.98
272 273 5.585047 GGTGGCGTGTAAGAGAAAATATCTT 59.415 40.000 0.00 0.00 38.96 2.40
273 274 6.238130 GGTGGCGTGTAAGAGAAAATATCTTC 60.238 42.308 0.00 0.00 38.96 2.87
274 275 5.815740 TGGCGTGTAAGAGAAAATATCTTCC 59.184 40.000 0.00 0.00 38.96 3.46
275 276 5.050972 GGCGTGTAAGAGAAAATATCTTCCG 60.051 44.000 0.00 0.00 38.96 4.30
276 277 5.556570 GCGTGTAAGAGAAAATATCTTCCGC 60.557 44.000 9.13 9.13 38.96 5.54
277 278 5.050972 CGTGTAAGAGAAAATATCTTCCGCC 60.051 44.000 0.00 0.00 38.96 6.13
278 279 5.815740 GTGTAAGAGAAAATATCTTCCGCCA 59.184 40.000 0.00 0.00 38.96 5.69
279 280 6.315393 GTGTAAGAGAAAATATCTTCCGCCAA 59.685 38.462 0.00 0.00 38.96 4.52
280 281 6.538742 TGTAAGAGAAAATATCTTCCGCCAAG 59.461 38.462 0.00 0.00 38.96 3.61
281 282 5.104259 AGAGAAAATATCTTCCGCCAAGT 57.896 39.130 0.00 0.00 38.96 3.16
282 283 4.878397 AGAGAAAATATCTTCCGCCAAGTG 59.122 41.667 0.00 0.00 38.96 3.16
283 284 3.378427 AGAAAATATCTTCCGCCAAGTGC 59.622 43.478 0.00 0.00 33.39 4.40
284 285 1.680338 AATATCTTCCGCCAAGTGCC 58.320 50.000 0.00 0.00 36.24 5.01
285 286 0.532862 ATATCTTCCGCCAAGTGCCG 60.533 55.000 0.00 0.00 36.24 5.69
286 287 2.587322 TATCTTCCGCCAAGTGCCGG 62.587 60.000 0.00 0.00 36.24 6.13
287 288 4.697756 CTTCCGCCAAGTGCCGGA 62.698 66.667 5.05 0.00 39.69 5.14
288 289 4.257654 TTCCGCCAAGTGCCGGAA 62.258 61.111 11.75 11.75 44.60 4.30
289 290 4.697756 TCCGCCAAGTGCCGGAAG 62.698 66.667 5.05 0.00 38.91 3.46
291 292 2.978010 CGCCAAGTGCCGGAAGTT 60.978 61.111 5.05 0.00 36.24 2.66
292 293 2.551912 CGCCAAGTGCCGGAAGTTT 61.552 57.895 5.05 0.00 36.24 2.66
293 294 1.739667 GCCAAGTGCCGGAAGTTTT 59.260 52.632 5.05 0.00 0.00 2.43
294 295 0.597377 GCCAAGTGCCGGAAGTTTTG 60.597 55.000 5.05 0.00 0.00 2.44
295 296 0.744281 CCAAGTGCCGGAAGTTTTGT 59.256 50.000 5.05 0.00 0.00 2.83
296 297 1.535860 CCAAGTGCCGGAAGTTTTGTG 60.536 52.381 5.05 0.00 0.00 3.33
297 298 1.403679 CAAGTGCCGGAAGTTTTGTGA 59.596 47.619 5.05 0.00 0.00 3.58
298 299 1.021968 AGTGCCGGAAGTTTTGTGAC 58.978 50.000 5.05 0.00 0.00 3.67
299 300 0.316689 GTGCCGGAAGTTTTGTGACG 60.317 55.000 5.05 0.00 0.00 4.35
300 301 0.745128 TGCCGGAAGTTTTGTGACGT 60.745 50.000 5.05 0.00 0.00 4.34
301 302 0.316689 GCCGGAAGTTTTGTGACGTG 60.317 55.000 5.05 0.00 0.00 4.49
302 303 1.011333 CCGGAAGTTTTGTGACGTGT 58.989 50.000 0.00 0.00 0.00 4.49
303 304 1.267832 CCGGAAGTTTTGTGACGTGTG 60.268 52.381 0.00 0.00 0.00 3.82
304 305 1.661617 CGGAAGTTTTGTGACGTGTGA 59.338 47.619 0.00 0.00 0.00 3.58
305 306 2.286833 CGGAAGTTTTGTGACGTGTGAT 59.713 45.455 0.00 0.00 0.00 3.06
306 307 3.242608 CGGAAGTTTTGTGACGTGTGATT 60.243 43.478 0.00 0.00 0.00 2.57
307 308 4.279659 GGAAGTTTTGTGACGTGTGATTC 58.720 43.478 0.00 0.00 0.00 2.52
308 309 4.201871 GGAAGTTTTGTGACGTGTGATTCA 60.202 41.667 0.00 0.00 0.00 2.57
309 310 5.499139 AAGTTTTGTGACGTGTGATTCAT 57.501 34.783 0.00 0.00 0.00 2.57
310 311 6.293190 GGAAGTTTTGTGACGTGTGATTCATA 60.293 38.462 0.00 0.00 0.00 2.15
311 312 6.801539 AGTTTTGTGACGTGTGATTCATAT 57.198 33.333 0.00 0.00 0.00 1.78
312 313 6.831769 AGTTTTGTGACGTGTGATTCATATC 58.168 36.000 0.00 0.00 0.00 1.63
313 314 5.794687 TTTGTGACGTGTGATTCATATCC 57.205 39.130 0.00 0.00 0.00 2.59
314 315 3.792401 TGTGACGTGTGATTCATATCCC 58.208 45.455 0.00 0.00 0.00 3.85
315 316 3.131396 GTGACGTGTGATTCATATCCCC 58.869 50.000 0.00 0.00 0.00 4.81
316 317 2.104111 TGACGTGTGATTCATATCCCCC 59.896 50.000 0.00 0.00 0.00 5.40
317 318 1.070134 ACGTGTGATTCATATCCCCCG 59.930 52.381 0.00 0.00 0.00 5.73
318 319 1.523758 GTGTGATTCATATCCCCCGC 58.476 55.000 0.00 0.00 0.00 6.13
319 320 0.400213 TGTGATTCATATCCCCCGCC 59.600 55.000 0.00 0.00 0.00 6.13
320 321 0.693049 GTGATTCATATCCCCCGCCT 59.307 55.000 0.00 0.00 0.00 5.52
321 322 0.984230 TGATTCATATCCCCCGCCTC 59.016 55.000 0.00 0.00 0.00 4.70
322 323 0.253327 GATTCATATCCCCCGCCTCC 59.747 60.000 0.00 0.00 0.00 4.30
323 324 0.475632 ATTCATATCCCCCGCCTCCA 60.476 55.000 0.00 0.00 0.00 3.86
324 325 0.475632 TTCATATCCCCCGCCTCCAT 60.476 55.000 0.00 0.00 0.00 3.41
325 326 1.200760 TCATATCCCCCGCCTCCATG 61.201 60.000 0.00 0.00 0.00 3.66
326 327 1.160870 ATATCCCCCGCCTCCATGA 59.839 57.895 0.00 0.00 0.00 3.07
327 328 0.475632 ATATCCCCCGCCTCCATGAA 60.476 55.000 0.00 0.00 0.00 2.57
328 329 1.127567 TATCCCCCGCCTCCATGAAG 61.128 60.000 0.00 0.00 0.00 3.02
329 330 4.883354 CCCCCGCCTCCATGAAGC 62.883 72.222 0.00 0.00 0.00 3.86
330 331 3.801997 CCCCGCCTCCATGAAGCT 61.802 66.667 0.00 0.00 0.00 3.74
331 332 2.273449 CCCGCCTCCATGAAGCTT 59.727 61.111 0.00 0.00 0.00 3.74
332 333 1.821332 CCCGCCTCCATGAAGCTTC 60.821 63.158 19.89 19.89 0.00 3.86
333 334 1.078214 CCGCCTCCATGAAGCTTCA 60.078 57.895 30.23 30.23 42.14 3.02
355 356 8.828688 TTCATGTCATGAAGAATCTGCTATAG 57.171 34.615 21.80 0.00 43.84 1.31
356 357 6.872547 TCATGTCATGAAGAATCTGCTATAGC 59.127 38.462 18.18 18.18 36.11 2.97
357 358 6.416631 TGTCATGAAGAATCTGCTATAGCT 57.583 37.500 24.61 5.05 42.66 3.32
358 359 6.221659 TGTCATGAAGAATCTGCTATAGCTG 58.778 40.000 24.61 23.23 42.66 4.24
359 360 6.183360 TGTCATGAAGAATCTGCTATAGCTGT 60.183 38.462 24.61 10.03 42.66 4.40
360 361 6.705381 GTCATGAAGAATCTGCTATAGCTGTT 59.295 38.462 24.61 18.68 42.66 3.16
361 362 7.226325 GTCATGAAGAATCTGCTATAGCTGTTT 59.774 37.037 24.61 22.68 42.66 2.83
362 363 7.772292 TCATGAAGAATCTGCTATAGCTGTTTT 59.228 33.333 24.61 19.70 42.66 2.43
363 364 7.928307 TGAAGAATCTGCTATAGCTGTTTTT 57.072 32.000 24.61 18.82 42.66 1.94
383 384 1.342555 TTTTCGCACTCCATACGACG 58.657 50.000 0.00 0.00 35.20 5.12
384 385 0.457166 TTTCGCACTCCATACGACGG 60.457 55.000 0.00 0.00 35.20 4.79
385 386 1.588824 TTCGCACTCCATACGACGGT 61.589 55.000 0.00 0.00 35.20 4.83
386 387 0.744057 TCGCACTCCATACGACGGTA 60.744 55.000 0.00 0.00 0.00 4.02
387 388 0.099259 CGCACTCCATACGACGGTAA 59.901 55.000 0.00 0.00 31.15 2.85
388 389 1.467883 CGCACTCCATACGACGGTAAA 60.468 52.381 0.00 0.00 31.15 2.01
389 390 2.609350 GCACTCCATACGACGGTAAAA 58.391 47.619 0.00 0.00 31.15 1.52
390 391 2.995258 GCACTCCATACGACGGTAAAAA 59.005 45.455 0.00 0.00 31.15 1.94
414 415 9.777575 AAAAAGAAAGCAGTTTGAATGAATTTG 57.222 25.926 0.00 0.00 0.00 2.32
415 416 6.535274 AGAAAGCAGTTTGAATGAATTTGC 57.465 33.333 0.00 0.00 0.00 3.68
416 417 5.467735 AGAAAGCAGTTTGAATGAATTTGCC 59.532 36.000 0.00 0.00 0.00 4.52
417 418 3.667360 AGCAGTTTGAATGAATTTGCCC 58.333 40.909 0.00 0.00 0.00 5.36
418 419 3.071312 AGCAGTTTGAATGAATTTGCCCA 59.929 39.130 0.00 0.00 0.00 5.36
419 420 4.004982 GCAGTTTGAATGAATTTGCCCAT 58.995 39.130 0.00 0.00 0.00 4.00
420 421 4.456566 GCAGTTTGAATGAATTTGCCCATT 59.543 37.500 0.00 0.00 35.87 3.16
421 422 5.391203 GCAGTTTGAATGAATTTGCCCATTC 60.391 40.000 9.54 9.54 45.28 2.67
422 423 5.935789 CAGTTTGAATGAATTTGCCCATTCT 59.064 36.000 14.95 0.00 45.28 2.40
423 424 5.935789 AGTTTGAATGAATTTGCCCATTCTG 59.064 36.000 14.95 0.00 45.28 3.02
424 425 3.864243 TGAATGAATTTGCCCATTCTGC 58.136 40.909 14.95 0.00 45.28 4.26
425 426 3.516300 TGAATGAATTTGCCCATTCTGCT 59.484 39.130 14.95 0.00 45.28 4.24
426 427 4.710865 TGAATGAATTTGCCCATTCTGCTA 59.289 37.500 14.95 0.00 45.28 3.49
427 428 4.931661 ATGAATTTGCCCATTCTGCTAG 57.068 40.909 6.53 0.00 34.66 3.42
428 429 3.966979 TGAATTTGCCCATTCTGCTAGA 58.033 40.909 0.00 0.00 34.66 2.43
429 430 3.949754 TGAATTTGCCCATTCTGCTAGAG 59.050 43.478 0.00 0.00 34.66 2.43
430 431 3.659183 ATTTGCCCATTCTGCTAGAGT 57.341 42.857 0.00 0.00 0.00 3.24
431 432 3.439857 TTTGCCCATTCTGCTAGAGTT 57.560 42.857 0.00 0.00 0.00 3.01
432 433 2.408271 TGCCCATTCTGCTAGAGTTG 57.592 50.000 0.00 0.00 0.00 3.16
433 434 1.020437 GCCCATTCTGCTAGAGTTGC 58.980 55.000 0.00 0.00 0.00 4.17
434 435 1.407989 GCCCATTCTGCTAGAGTTGCT 60.408 52.381 0.00 0.00 0.00 3.91
435 436 2.559440 CCCATTCTGCTAGAGTTGCTC 58.441 52.381 0.00 0.00 0.00 4.26
436 437 2.170187 CCCATTCTGCTAGAGTTGCTCT 59.830 50.000 4.02 4.02 43.83 4.09
437 438 3.386078 CCCATTCTGCTAGAGTTGCTCTA 59.614 47.826 0.00 5.84 41.50 2.43
438 439 4.141846 CCCATTCTGCTAGAGTTGCTCTAA 60.142 45.833 7.22 0.00 41.74 2.10
439 440 5.049167 CCATTCTGCTAGAGTTGCTCTAAG 58.951 45.833 7.22 3.73 41.74 2.18
440 441 5.163468 CCATTCTGCTAGAGTTGCTCTAAGA 60.163 44.000 7.22 5.68 41.74 2.10
441 442 6.462768 CCATTCTGCTAGAGTTGCTCTAAGAT 60.463 42.308 7.22 0.00 41.74 2.40
442 443 5.766150 TCTGCTAGAGTTGCTCTAAGATC 57.234 43.478 7.22 0.00 41.74 2.75
443 444 5.196695 TCTGCTAGAGTTGCTCTAAGATCA 58.803 41.667 7.22 3.46 41.74 2.92
444 445 5.832595 TCTGCTAGAGTTGCTCTAAGATCAT 59.167 40.000 7.22 0.00 41.74 2.45
445 446 7.001073 TCTGCTAGAGTTGCTCTAAGATCATA 58.999 38.462 7.22 0.00 41.74 2.15
446 447 7.503902 TCTGCTAGAGTTGCTCTAAGATCATAA 59.496 37.037 7.22 0.00 41.74 1.90
447 448 7.429633 TGCTAGAGTTGCTCTAAGATCATAAC 58.570 38.462 7.22 0.00 41.74 1.89
448 449 7.286546 TGCTAGAGTTGCTCTAAGATCATAACT 59.713 37.037 7.22 0.00 41.74 2.24
449 450 7.807907 GCTAGAGTTGCTCTAAGATCATAACTC 59.192 40.741 0.00 0.00 41.74 3.01
450 451 6.734137 AGAGTTGCTCTAAGATCATAACTCG 58.266 40.000 0.00 0.00 44.23 4.18
451 452 6.544197 AGAGTTGCTCTAAGATCATAACTCGA 59.456 38.462 0.00 0.00 44.23 4.04
452 453 7.230510 AGAGTTGCTCTAAGATCATAACTCGAT 59.769 37.037 0.00 0.00 44.23 3.59
453 454 8.397575 AGTTGCTCTAAGATCATAACTCGATA 57.602 34.615 0.00 0.00 0.00 2.92
454 455 8.293867 AGTTGCTCTAAGATCATAACTCGATAC 58.706 37.037 0.00 0.00 0.00 2.24
455 456 6.832804 TGCTCTAAGATCATAACTCGATACG 58.167 40.000 0.00 0.00 0.00 3.06
456 457 6.128254 TGCTCTAAGATCATAACTCGATACGG 60.128 42.308 0.00 0.00 0.00 4.02
457 458 6.179504 TCTAAGATCATAACTCGATACGGC 57.820 41.667 0.00 0.00 0.00 5.68
458 459 3.851976 AGATCATAACTCGATACGGCC 57.148 47.619 0.00 0.00 0.00 6.13
459 460 3.154710 AGATCATAACTCGATACGGCCA 58.845 45.455 2.24 0.00 0.00 5.36
460 461 3.764434 AGATCATAACTCGATACGGCCAT 59.236 43.478 2.24 0.00 0.00 4.40
461 462 3.570926 TCATAACTCGATACGGCCATC 57.429 47.619 2.24 0.00 0.00 3.51
462 463 2.888414 TCATAACTCGATACGGCCATCA 59.112 45.455 2.24 0.00 0.00 3.07
463 464 3.509967 TCATAACTCGATACGGCCATCAT 59.490 43.478 2.24 0.00 0.00 2.45
464 465 2.440539 AACTCGATACGGCCATCATC 57.559 50.000 2.24 0.39 0.00 2.92
465 466 1.328279 ACTCGATACGGCCATCATCA 58.672 50.000 2.24 0.00 0.00 3.07
466 467 1.000163 ACTCGATACGGCCATCATCAC 60.000 52.381 2.24 0.00 0.00 3.06
467 468 0.039527 TCGATACGGCCATCATCACG 60.040 55.000 2.24 0.00 0.00 4.35
468 469 0.318699 CGATACGGCCATCATCACGT 60.319 55.000 2.24 0.00 42.71 4.49
469 470 1.139989 GATACGGCCATCATCACGTG 58.860 55.000 9.94 9.94 40.12 4.49
470 471 0.249868 ATACGGCCATCATCACGTGG 60.250 55.000 17.00 0.00 40.12 4.94
471 472 1.324005 TACGGCCATCATCACGTGGA 61.324 55.000 17.00 6.32 40.12 4.02
472 473 2.173669 CGGCCATCATCACGTGGAC 61.174 63.158 17.00 0.00 40.28 4.02
473 474 2.173669 GGCCATCATCACGTGGACG 61.174 63.158 17.00 4.54 46.33 4.79
474 475 2.173669 GCCATCATCACGTGGACGG 61.174 63.158 17.00 9.15 44.95 4.79
475 476 1.218047 CCATCATCACGTGGACGGT 59.782 57.895 17.00 0.00 44.95 4.83
488 489 1.342076 TGGACGGTCTAAGATGAGGCT 60.342 52.381 8.23 0.00 0.00 4.58
536 538 2.916716 CGATCTGAAACCGCCAAAAATG 59.083 45.455 0.00 0.00 0.00 2.32
584 586 3.066760 GCTCTTCTTCTCTACTGCTCTCC 59.933 52.174 0.00 0.00 0.00 3.71
585 587 3.626930 TCTTCTTCTCTACTGCTCTCCC 58.373 50.000 0.00 0.00 0.00 4.30
605 607 1.787112 CCCTTTTCCCCATTCCCCA 59.213 57.895 0.00 0.00 0.00 4.96
784 786 0.911053 AGGGTTATCCGGGCGTTTTA 59.089 50.000 0.00 0.00 41.52 1.52
797 799 1.664333 GTTTTACGCGTCGGGACCA 60.664 57.895 18.63 0.00 0.00 4.02
865 867 4.671766 GCCGCTTGTTCGATTTACATTCTT 60.672 41.667 0.00 0.00 0.00 2.52
1059 1064 2.526110 GGTGGCTTCCCAGGGTTT 59.474 61.111 5.01 0.00 43.18 3.27
1063 1068 3.373565 GCTTCCCAGGGTTTGCCG 61.374 66.667 5.01 0.00 34.97 5.69
1332 1369 4.817318 TTTTCTTGGCCAGTTCTTGTTT 57.183 36.364 5.11 0.00 0.00 2.83
1400 1437 5.507149 GGTTAGTTGTTCATGCACAATGTGA 60.507 40.000 18.66 2.72 38.89 3.58
1402 1439 4.801891 AGTTGTTCATGCACAATGTGATC 58.198 39.130 18.66 0.40 38.89 2.92
1467 1504 5.000591 TCATAACTTTTGTCGGATTGCTCA 58.999 37.500 0.00 0.00 0.00 4.26
1770 1807 5.049398 TGTTTTACTGTTTCGTGCAAACT 57.951 34.783 0.00 0.00 44.35 2.66
1787 1824 6.364976 GTGCAAACTTAATACCATTGTTGGAC 59.635 38.462 0.00 0.00 46.92 4.02
1829 1866 2.151202 GCTCTCAGAGCGCTAGATACT 58.849 52.381 11.89 0.00 45.85 2.12
2392 2430 9.823647 TTTTGTTTCAATTAAGCTGTATCCAAA 57.176 25.926 0.00 0.00 0.00 3.28
2844 2882 5.399301 CGTGAAAGTTTTACCTCATTGCTTG 59.601 40.000 5.05 0.00 0.00 4.01
2883 2921 7.682787 ACAAATATTGTACTCCCTCTGATCT 57.317 36.000 0.00 0.00 43.27 2.75
2923 2961 8.174733 TCACTTAGTACAACTTTAGTAGTGCT 57.825 34.615 0.00 0.00 37.12 4.40
2924 2962 9.288576 TCACTTAGTACAACTTTAGTAGTGCTA 57.711 33.333 0.00 0.00 37.12 3.49
2970 3111 6.576662 TTGTTCCACACTTTCACTTGTTTA 57.423 33.333 0.00 0.00 0.00 2.01
3003 3149 1.775385 ACCACTTTCACTTGGTTGGG 58.225 50.000 0.00 0.00 44.06 4.12
3095 3265 3.201290 AGCCTGCAAGATTTACTCGATG 58.799 45.455 0.00 0.00 34.07 3.84
3182 3352 1.642037 CGATCTGCAAGCACCAGGTG 61.642 60.000 16.16 16.16 36.51 4.00
3196 3366 2.899838 GGTGAGCAACGTGTGGCA 60.900 61.111 1.65 0.00 0.00 4.92
3303 3479 1.341581 GGAAAACCCATGGAATCGGGA 60.342 52.381 15.22 0.00 46.34 5.14
3305 3481 2.143876 AAACCCATGGAATCGGGAAG 57.856 50.000 15.22 0.00 46.34 3.46
3339 3515 2.329379 CTGCCGAGAGTTTCTGTACAC 58.671 52.381 0.00 0.00 0.00 2.90
3363 3539 1.700186 GTGTTCCCAGTTCCTTCCTCT 59.300 52.381 0.00 0.00 0.00 3.69
3435 3612 1.320344 TACGCTGCCGGTCAAGATCT 61.320 55.000 1.90 0.00 39.22 2.75
3440 3617 2.743183 GCTGCCGGTCAAGATCTTGTAT 60.743 50.000 29.80 0.00 41.16 2.29
3484 3661 7.937649 AGGTGTTTGTCAAAATAAACTAGACC 58.062 34.615 0.00 0.00 37.38 3.85
3494 3671 7.656137 TCAAAATAAACTAGACCAGAGTGTGTC 59.344 37.037 0.00 0.00 0.00 3.67
3496 3673 2.677542 ACTAGACCAGAGTGTGTCCA 57.322 50.000 0.00 0.00 31.76 4.02
3497 3674 2.958818 ACTAGACCAGAGTGTGTCCAA 58.041 47.619 0.00 0.00 31.76 3.53
3498 3675 2.628657 ACTAGACCAGAGTGTGTCCAAC 59.371 50.000 0.00 0.00 31.76 3.77
3499 3676 1.496060 AGACCAGAGTGTGTCCAACA 58.504 50.000 0.00 0.00 36.04 3.33
3500 3677 1.414181 AGACCAGAGTGTGTCCAACAG 59.586 52.381 0.00 0.00 40.26 3.16
3501 3678 0.179045 ACCAGAGTGTGTCCAACAGC 60.179 55.000 0.00 0.00 40.26 4.40
3502 3679 0.886490 CCAGAGTGTGTCCAACAGCC 60.886 60.000 0.00 0.00 40.26 4.85
3509 3686 0.603975 GTGTCCAACAGCCTGAGGAC 60.604 60.000 24.39 24.39 42.22 3.85
3511 3688 0.321122 GTCCAACAGCCTGAGGACTG 60.321 60.000 24.08 17.51 40.35 3.51
3531 4092 2.378208 TGTTCCTCATTTCATCCCCACA 59.622 45.455 0.00 0.00 0.00 4.17
3535 4096 4.047166 TCCTCATTTCATCCCCACATAGT 58.953 43.478 0.00 0.00 0.00 2.12
3555 4116 7.669722 ACATAGTGGACAACCTCATTTTATGTT 59.330 33.333 0.00 0.00 37.04 2.71
3575 4136 4.082125 GTTGGGATGAAATGAGGTTGTCT 58.918 43.478 0.00 0.00 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 9.056005 GCATAGTTGATGATGAAATACCAAGTA 57.944 33.333 0.00 0.00 37.82 2.24
28 29 7.557358 TGCATAGTTGATGATGAAATACCAAGT 59.443 33.333 0.00 0.00 37.82 3.16
29 30 7.933396 TGCATAGTTGATGATGAAATACCAAG 58.067 34.615 0.00 0.00 37.82 3.61
30 31 7.878547 TGCATAGTTGATGATGAAATACCAA 57.121 32.000 0.00 0.00 37.82 3.67
31 32 7.522562 GCATGCATAGTTGATGATGAAATACCA 60.523 37.037 14.21 0.00 37.82 3.25
32 33 6.805271 GCATGCATAGTTGATGATGAAATACC 59.195 38.462 14.21 0.00 37.82 2.73
33 34 6.805271 GGCATGCATAGTTGATGATGAAATAC 59.195 38.462 21.36 0.00 37.82 1.89
34 35 6.490721 TGGCATGCATAGTTGATGATGAAATA 59.509 34.615 21.36 0.00 37.82 1.40
35 36 5.303333 TGGCATGCATAGTTGATGATGAAAT 59.697 36.000 21.36 0.00 37.82 2.17
36 37 4.645588 TGGCATGCATAGTTGATGATGAAA 59.354 37.500 21.36 0.00 37.82 2.69
37 38 4.208746 TGGCATGCATAGTTGATGATGAA 58.791 39.130 21.36 0.00 37.82 2.57
38 39 3.818773 CTGGCATGCATAGTTGATGATGA 59.181 43.478 21.36 0.00 37.82 2.92
39 40 3.611766 GCTGGCATGCATAGTTGATGATG 60.612 47.826 21.36 0.00 37.82 3.07
40 41 2.557056 GCTGGCATGCATAGTTGATGAT 59.443 45.455 21.36 0.00 37.82 2.45
41 42 1.951602 GCTGGCATGCATAGTTGATGA 59.048 47.619 21.36 0.00 37.82 2.92
42 43 1.679153 TGCTGGCATGCATAGTTGATG 59.321 47.619 21.36 0.00 38.12 3.07
43 44 2.061509 TGCTGGCATGCATAGTTGAT 57.938 45.000 21.36 0.00 38.12 2.57
44 45 1.836802 TTGCTGGCATGCATAGTTGA 58.163 45.000 21.36 4.89 42.96 3.18
45 46 2.739292 GATTGCTGGCATGCATAGTTG 58.261 47.619 21.36 3.40 42.96 3.16
46 47 1.335810 CGATTGCTGGCATGCATAGTT 59.664 47.619 21.36 6.59 42.96 2.24
47 48 0.949397 CGATTGCTGGCATGCATAGT 59.051 50.000 21.36 1.34 42.96 2.12
48 49 1.232119 TCGATTGCTGGCATGCATAG 58.768 50.000 21.36 17.55 42.96 2.23
49 50 1.808343 GATCGATTGCTGGCATGCATA 59.192 47.619 21.36 6.88 42.96 3.14
50 51 0.596577 GATCGATTGCTGGCATGCAT 59.403 50.000 21.36 3.18 42.96 3.96
51 52 0.464916 AGATCGATTGCTGGCATGCA 60.465 50.000 21.36 4.79 41.65 3.96
52 53 1.463831 CTAGATCGATTGCTGGCATGC 59.536 52.381 9.90 9.90 0.00 4.06
53 54 2.074576 CCTAGATCGATTGCTGGCATG 58.925 52.381 0.00 0.00 0.00 4.06
54 55 1.002888 CCCTAGATCGATTGCTGGCAT 59.997 52.381 0.00 0.00 0.00 4.40
55 56 0.394192 CCCTAGATCGATTGCTGGCA 59.606 55.000 0.00 0.00 0.00 4.92
56 57 0.681733 TCCCTAGATCGATTGCTGGC 59.318 55.000 0.00 0.00 0.00 4.85
57 58 3.332919 CAATCCCTAGATCGATTGCTGG 58.667 50.000 0.00 0.00 39.06 4.85
58 59 3.332919 CCAATCCCTAGATCGATTGCTG 58.667 50.000 15.97 5.81 42.58 4.41
59 60 2.289945 GCCAATCCCTAGATCGATTGCT 60.290 50.000 15.97 0.00 42.58 3.91
60 61 2.079925 GCCAATCCCTAGATCGATTGC 58.920 52.381 15.97 10.77 42.58 3.56
61 62 3.070018 GTGCCAATCCCTAGATCGATTG 58.930 50.000 15.06 15.06 43.23 2.67
62 63 2.705658 TGTGCCAATCCCTAGATCGATT 59.294 45.455 0.00 0.00 0.00 3.34
63 64 2.329267 TGTGCCAATCCCTAGATCGAT 58.671 47.619 0.00 0.00 0.00 3.59
64 65 1.788229 TGTGCCAATCCCTAGATCGA 58.212 50.000 0.00 0.00 0.00 3.59
65 66 2.847327 ATGTGCCAATCCCTAGATCG 57.153 50.000 0.00 0.00 0.00 3.69
66 67 4.457257 GCTTTATGTGCCAATCCCTAGATC 59.543 45.833 0.00 0.00 0.00 2.75
67 68 4.141181 TGCTTTATGTGCCAATCCCTAGAT 60.141 41.667 0.00 0.00 0.00 1.98
68 69 3.201930 TGCTTTATGTGCCAATCCCTAGA 59.798 43.478 0.00 0.00 0.00 2.43
69 70 3.316308 GTGCTTTATGTGCCAATCCCTAG 59.684 47.826 0.00 0.00 0.00 3.02
70 71 3.287222 GTGCTTTATGTGCCAATCCCTA 58.713 45.455 0.00 0.00 0.00 3.53
71 72 2.102578 GTGCTTTATGTGCCAATCCCT 58.897 47.619 0.00 0.00 0.00 4.20
72 73 1.824230 TGTGCTTTATGTGCCAATCCC 59.176 47.619 0.00 0.00 0.00 3.85
73 74 3.591196 TTGTGCTTTATGTGCCAATCC 57.409 42.857 0.00 0.00 0.00 3.01
74 75 4.808558 TCTTTGTGCTTTATGTGCCAATC 58.191 39.130 0.00 0.00 0.00 2.67
75 76 4.870123 TCTTTGTGCTTTATGTGCCAAT 57.130 36.364 0.00 0.00 0.00 3.16
76 77 4.870123 ATCTTTGTGCTTTATGTGCCAA 57.130 36.364 0.00 0.00 0.00 4.52
77 78 4.615682 CGAATCTTTGTGCTTTATGTGCCA 60.616 41.667 0.00 0.00 0.00 4.92
78 79 3.853671 CGAATCTTTGTGCTTTATGTGCC 59.146 43.478 0.00 0.00 0.00 5.01
79 80 3.853671 CCGAATCTTTGTGCTTTATGTGC 59.146 43.478 0.00 0.00 0.00 4.57
80 81 4.853196 CACCGAATCTTTGTGCTTTATGTG 59.147 41.667 0.00 0.00 0.00 3.21
81 82 5.046910 CACCGAATCTTTGTGCTTTATGT 57.953 39.130 0.00 0.00 0.00 2.29
103 104 4.410400 CCCCGTCCTGACAAGGGC 62.410 72.222 8.91 0.00 45.54 5.19
104 105 4.410400 GCCCCGTCCTGACAAGGG 62.410 72.222 15.03 15.03 44.62 3.95
105 106 4.410400 GGCCCCGTCCTGACAAGG 62.410 72.222 0.00 0.00 46.06 3.61
106 107 4.760047 CGGCCCCGTCCTGACAAG 62.760 72.222 0.00 0.00 34.35 3.16
120 121 4.191485 CACAATCGACGTCGCGGC 62.191 66.667 32.19 1.93 39.60 6.53
121 122 2.774951 GACACAATCGACGTCGCGG 61.775 63.158 32.19 23.83 39.60 6.46
122 123 1.987608 CTGACACAATCGACGTCGCG 61.988 60.000 32.19 23.45 39.60 5.87
123 124 0.728129 TCTGACACAATCGACGTCGC 60.728 55.000 32.19 16.89 39.60 5.19
124 125 1.681825 TTCTGACACAATCGACGTCG 58.318 50.000 31.30 31.30 41.45 5.12
125 126 5.571741 TCTTATTTCTGACACAATCGACGTC 59.428 40.000 5.18 5.18 0.00 4.34
126 127 5.466819 TCTTATTTCTGACACAATCGACGT 58.533 37.500 0.00 0.00 0.00 4.34
127 128 6.389622 TTCTTATTTCTGACACAATCGACG 57.610 37.500 0.00 0.00 0.00 5.12
128 129 6.183360 CCCTTCTTATTTCTGACACAATCGAC 60.183 42.308 0.00 0.00 0.00 4.20
129 130 5.874810 CCCTTCTTATTTCTGACACAATCGA 59.125 40.000 0.00 0.00 0.00 3.59
130 131 5.065218 CCCCTTCTTATTTCTGACACAATCG 59.935 44.000 0.00 0.00 0.00 3.34
131 132 6.180472 TCCCCTTCTTATTTCTGACACAATC 58.820 40.000 0.00 0.00 0.00 2.67
132 133 6.139679 TCCCCTTCTTATTTCTGACACAAT 57.860 37.500 0.00 0.00 0.00 2.71
133 134 5.576563 TCCCCTTCTTATTTCTGACACAA 57.423 39.130 0.00 0.00 0.00 3.33
134 135 5.779241 ATCCCCTTCTTATTTCTGACACA 57.221 39.130 0.00 0.00 0.00 3.72
135 136 7.110155 TGTTATCCCCTTCTTATTTCTGACAC 58.890 38.462 0.00 0.00 0.00 3.67
136 137 7.265599 TGTTATCCCCTTCTTATTTCTGACA 57.734 36.000 0.00 0.00 0.00 3.58
137 138 8.459635 GTTTGTTATCCCCTTCTTATTTCTGAC 58.540 37.037 0.00 0.00 0.00 3.51
138 139 8.167392 TGTTTGTTATCCCCTTCTTATTTCTGA 58.833 33.333 0.00 0.00 0.00 3.27
139 140 8.244113 GTGTTTGTTATCCCCTTCTTATTTCTG 58.756 37.037 0.00 0.00 0.00 3.02
140 141 7.947890 TGTGTTTGTTATCCCCTTCTTATTTCT 59.052 33.333 0.00 0.00 0.00 2.52
141 142 8.027189 GTGTGTTTGTTATCCCCTTCTTATTTC 58.973 37.037 0.00 0.00 0.00 2.17
142 143 7.308951 CGTGTGTTTGTTATCCCCTTCTTATTT 60.309 37.037 0.00 0.00 0.00 1.40
143 144 6.150474 CGTGTGTTTGTTATCCCCTTCTTATT 59.850 38.462 0.00 0.00 0.00 1.40
144 145 5.646360 CGTGTGTTTGTTATCCCCTTCTTAT 59.354 40.000 0.00 0.00 0.00 1.73
145 146 4.998672 CGTGTGTTTGTTATCCCCTTCTTA 59.001 41.667 0.00 0.00 0.00 2.10
146 147 3.818773 CGTGTGTTTGTTATCCCCTTCTT 59.181 43.478 0.00 0.00 0.00 2.52
147 148 3.408634 CGTGTGTTTGTTATCCCCTTCT 58.591 45.455 0.00 0.00 0.00 2.85
148 149 2.095415 GCGTGTGTTTGTTATCCCCTTC 60.095 50.000 0.00 0.00 0.00 3.46
149 150 1.883926 GCGTGTGTTTGTTATCCCCTT 59.116 47.619 0.00 0.00 0.00 3.95
150 151 1.530323 GCGTGTGTTTGTTATCCCCT 58.470 50.000 0.00 0.00 0.00 4.79
151 152 0.524414 GGCGTGTGTTTGTTATCCCC 59.476 55.000 0.00 0.00 0.00 4.81
152 153 1.199097 CTGGCGTGTGTTTGTTATCCC 59.801 52.381 0.00 0.00 0.00 3.85
153 154 1.401018 GCTGGCGTGTGTTTGTTATCC 60.401 52.381 0.00 0.00 0.00 2.59
154 155 1.724654 CGCTGGCGTGTGTTTGTTATC 60.725 52.381 6.83 0.00 34.35 1.75
155 156 0.237235 CGCTGGCGTGTGTTTGTTAT 59.763 50.000 6.83 0.00 34.35 1.89
156 157 1.644372 CGCTGGCGTGTGTTTGTTA 59.356 52.632 6.83 0.00 34.35 2.41
157 158 2.407210 CGCTGGCGTGTGTTTGTT 59.593 55.556 6.83 0.00 34.35 2.83
169 170 2.629050 CTATCACGGGTGGACGCTGG 62.629 65.000 0.00 0.00 37.37 4.85
170 171 1.226974 CTATCACGGGTGGACGCTG 60.227 63.158 0.00 0.00 37.37 5.18
171 172 3.077519 GCTATCACGGGTGGACGCT 62.078 63.158 0.00 0.00 37.37 5.07
172 173 2.585247 GCTATCACGGGTGGACGC 60.585 66.667 0.00 0.00 37.37 5.19
173 174 2.071844 ATCGCTATCACGGGTGGACG 62.072 60.000 0.00 0.00 40.31 4.79
174 175 0.597637 CATCGCTATCACGGGTGGAC 60.598 60.000 0.00 0.00 0.00 4.02
175 176 1.739667 CATCGCTATCACGGGTGGA 59.260 57.895 0.00 0.00 0.00 4.02
176 177 1.300931 CCATCGCTATCACGGGTGG 60.301 63.158 0.00 0.00 34.57 4.61
177 178 0.875908 CACCATCGCTATCACGGGTG 60.876 60.000 0.00 0.00 38.44 4.61
178 179 1.040893 TCACCATCGCTATCACGGGT 61.041 55.000 0.00 0.00 0.00 5.28
179 180 0.597637 GTCACCATCGCTATCACGGG 60.598 60.000 0.00 0.00 0.00 5.28
180 181 0.385751 AGTCACCATCGCTATCACGG 59.614 55.000 0.00 0.00 0.00 4.94
181 182 2.209838 AAGTCACCATCGCTATCACG 57.790 50.000 0.00 0.00 0.00 4.35
193 194 0.314935 TTGGACGTCGGTAAGTCACC 59.685 55.000 9.92 0.00 44.75 4.02
194 195 1.412387 GTTGGACGTCGGTAAGTCAC 58.588 55.000 9.92 0.00 39.01 3.67
195 196 0.314935 GGTTGGACGTCGGTAAGTCA 59.685 55.000 9.92 0.00 39.01 3.41
196 197 0.314935 TGGTTGGACGTCGGTAAGTC 59.685 55.000 9.92 0.00 36.70 3.01
197 198 0.971386 ATGGTTGGACGTCGGTAAGT 59.029 50.000 9.92 0.00 0.00 2.24
198 199 1.355971 CATGGTTGGACGTCGGTAAG 58.644 55.000 9.92 0.00 0.00 2.34
199 200 0.037139 CCATGGTTGGACGTCGGTAA 60.037 55.000 9.92 1.89 46.92 2.85
200 201 1.186917 ACCATGGTTGGACGTCGGTA 61.187 55.000 13.00 0.00 46.92 4.02
201 202 2.345991 CCATGGTTGGACGTCGGT 59.654 61.111 9.92 0.00 46.92 4.69
202 203 2.032634 CACCATGGTTGGACGTCGG 61.033 63.158 16.84 5.65 46.92 4.79
203 204 2.677003 GCACCATGGTTGGACGTCG 61.677 63.158 16.84 1.95 46.92 5.12
204 205 2.332654 GGCACCATGGTTGGACGTC 61.333 63.158 16.84 7.13 46.92 4.34
205 206 2.282180 GGCACCATGGTTGGACGT 60.282 61.111 16.84 0.00 46.92 4.34
206 207 3.430862 CGGCACCATGGTTGGACG 61.431 66.667 16.84 15.97 46.92 4.79
207 208 2.033448 TCGGCACCATGGTTGGAC 59.967 61.111 16.84 6.28 46.92 4.02
208 209 2.033448 GTCGGCACCATGGTTGGA 59.967 61.111 16.84 9.97 46.92 3.53
210 211 3.430862 CCGTCGGCACCATGGTTG 61.431 66.667 16.84 12.18 0.00 3.77
211 212 3.605749 CTCCGTCGGCACCATGGTT 62.606 63.158 16.84 0.00 0.00 3.67
212 213 4.082523 CTCCGTCGGCACCATGGT 62.083 66.667 13.00 13.00 0.00 3.55
213 214 3.770040 TCTCCGTCGGCACCATGG 61.770 66.667 11.19 11.19 0.00 3.66
214 215 2.509336 GTCTCCGTCGGCACCATG 60.509 66.667 6.34 0.00 0.00 3.66
215 216 2.680352 AGTCTCCGTCGGCACCAT 60.680 61.111 6.34 0.00 0.00 3.55
216 217 3.371063 GAGTCTCCGTCGGCACCA 61.371 66.667 6.34 0.00 0.00 4.17
217 218 4.477975 CGAGTCTCCGTCGGCACC 62.478 72.222 6.34 0.00 33.66 5.01
223 224 3.384014 CTGTCGGCGAGTCTCCGTC 62.384 68.421 20.35 15.65 46.49 4.79
224 225 3.432588 CTGTCGGCGAGTCTCCGT 61.433 66.667 20.35 0.00 46.49 4.69
226 227 2.179517 CACTGTCGGCGAGTCTCC 59.820 66.667 11.20 0.00 0.00 3.71
227 228 1.863662 TTCCACTGTCGGCGAGTCTC 61.864 60.000 11.20 0.00 0.00 3.36
228 229 1.867919 CTTCCACTGTCGGCGAGTCT 61.868 60.000 11.20 0.00 0.00 3.24
229 230 1.444553 CTTCCACTGTCGGCGAGTC 60.445 63.158 11.20 0.00 0.00 3.36
230 231 2.651361 CTTCCACTGTCGGCGAGT 59.349 61.111 11.20 2.01 0.00 4.18
231 232 2.125912 CCTTCCACTGTCGGCGAG 60.126 66.667 11.20 1.19 0.00 5.03
232 233 3.691342 CCCTTCCACTGTCGGCGA 61.691 66.667 4.99 4.99 0.00 5.54
233 234 4.003788 ACCCTTCCACTGTCGGCG 62.004 66.667 0.00 0.00 0.00 6.46
234 235 2.358737 CACCCTTCCACTGTCGGC 60.359 66.667 0.00 0.00 0.00 5.54
235 236 2.347490 CCACCCTTCCACTGTCGG 59.653 66.667 0.00 0.00 0.00 4.79
236 237 2.358737 GCCACCCTTCCACTGTCG 60.359 66.667 0.00 0.00 0.00 4.35
237 238 2.358737 CGCCACCCTTCCACTGTC 60.359 66.667 0.00 0.00 0.00 3.51
238 239 3.168528 ACGCCACCCTTCCACTGT 61.169 61.111 0.00 0.00 0.00 3.55
239 240 2.107041 TACACGCCACCCTTCCACTG 62.107 60.000 0.00 0.00 0.00 3.66
240 241 1.412453 TTACACGCCACCCTTCCACT 61.412 55.000 0.00 0.00 0.00 4.00
241 242 0.953960 CTTACACGCCACCCTTCCAC 60.954 60.000 0.00 0.00 0.00 4.02
242 243 1.122632 TCTTACACGCCACCCTTCCA 61.123 55.000 0.00 0.00 0.00 3.53
243 244 0.391263 CTCTTACACGCCACCCTTCC 60.391 60.000 0.00 0.00 0.00 3.46
244 245 0.606604 TCTCTTACACGCCACCCTTC 59.393 55.000 0.00 0.00 0.00 3.46
245 246 1.053424 TTCTCTTACACGCCACCCTT 58.947 50.000 0.00 0.00 0.00 3.95
246 247 1.053424 TTTCTCTTACACGCCACCCT 58.947 50.000 0.00 0.00 0.00 4.34
247 248 1.886886 TTTTCTCTTACACGCCACCC 58.113 50.000 0.00 0.00 0.00 4.61
248 249 5.116882 AGATATTTTCTCTTACACGCCACC 58.883 41.667 0.00 0.00 0.00 4.61
249 250 6.238130 GGAAGATATTTTCTCTTACACGCCAC 60.238 42.308 6.01 0.00 34.30 5.01
250 251 5.815740 GGAAGATATTTTCTCTTACACGCCA 59.184 40.000 6.01 0.00 34.30 5.69
251 252 5.050972 CGGAAGATATTTTCTCTTACACGCC 60.051 44.000 6.01 0.00 33.85 5.68
252 253 5.556570 GCGGAAGATATTTTCTCTTACACGC 60.557 44.000 6.01 6.81 40.15 5.34
253 254 5.050972 GGCGGAAGATATTTTCTCTTACACG 60.051 44.000 6.01 1.25 33.85 4.49
254 255 5.815740 TGGCGGAAGATATTTTCTCTTACAC 59.184 40.000 6.01 0.00 33.85 2.90
255 256 5.984725 TGGCGGAAGATATTTTCTCTTACA 58.015 37.500 6.01 0.00 33.85 2.41
256 257 6.539103 ACTTGGCGGAAGATATTTTCTCTTAC 59.461 38.462 6.01 0.00 33.18 2.34
257 258 6.538742 CACTTGGCGGAAGATATTTTCTCTTA 59.461 38.462 6.01 0.00 33.18 2.10
258 259 5.355350 CACTTGGCGGAAGATATTTTCTCTT 59.645 40.000 6.01 0.00 35.69 2.85
259 260 4.878397 CACTTGGCGGAAGATATTTTCTCT 59.122 41.667 6.01 0.00 35.42 3.10
260 261 4.496507 GCACTTGGCGGAAGATATTTTCTC 60.497 45.833 6.01 0.00 35.42 2.87
261 262 3.378427 GCACTTGGCGGAAGATATTTTCT 59.622 43.478 6.01 0.00 35.42 2.52
262 263 3.489229 GGCACTTGGCGGAAGATATTTTC 60.489 47.826 0.00 0.00 46.16 2.29
263 264 2.427095 GGCACTTGGCGGAAGATATTTT 59.573 45.455 1.34 0.00 46.16 1.82
264 265 2.024414 GGCACTTGGCGGAAGATATTT 58.976 47.619 1.34 0.00 46.16 1.40
265 266 1.680338 GGCACTTGGCGGAAGATATT 58.320 50.000 1.34 0.00 46.16 1.28
266 267 3.403936 GGCACTTGGCGGAAGATAT 57.596 52.632 1.34 0.00 46.16 1.63
267 268 4.954933 GGCACTTGGCGGAAGATA 57.045 55.556 1.34 0.00 46.16 1.98
275 276 0.597377 CAAAACTTCCGGCACTTGGC 60.597 55.000 0.00 0.00 43.74 4.52
276 277 0.744281 ACAAAACTTCCGGCACTTGG 59.256 50.000 0.00 0.00 0.00 3.61
277 278 1.403679 TCACAAAACTTCCGGCACTTG 59.596 47.619 0.00 0.00 0.00 3.16
278 279 1.404035 GTCACAAAACTTCCGGCACTT 59.596 47.619 0.00 0.00 0.00 3.16
279 280 1.021968 GTCACAAAACTTCCGGCACT 58.978 50.000 0.00 0.00 0.00 4.40
280 281 0.316689 CGTCACAAAACTTCCGGCAC 60.317 55.000 0.00 0.00 0.00 5.01
281 282 0.745128 ACGTCACAAAACTTCCGGCA 60.745 50.000 0.00 0.00 0.00 5.69
282 283 0.316689 CACGTCACAAAACTTCCGGC 60.317 55.000 0.00 0.00 0.00 6.13
283 284 1.011333 ACACGTCACAAAACTTCCGG 58.989 50.000 0.00 0.00 0.00 5.14
284 285 1.661617 TCACACGTCACAAAACTTCCG 59.338 47.619 0.00 0.00 0.00 4.30
285 286 3.963383 ATCACACGTCACAAAACTTCC 57.037 42.857 0.00 0.00 0.00 3.46
286 287 4.904116 TGAATCACACGTCACAAAACTTC 58.096 39.130 0.00 0.00 0.00 3.01
287 288 4.955925 TGAATCACACGTCACAAAACTT 57.044 36.364 0.00 0.00 0.00 2.66
288 289 6.128282 GGATATGAATCACACGTCACAAAACT 60.128 38.462 0.00 0.00 33.41 2.66
289 290 6.021596 GGATATGAATCACACGTCACAAAAC 58.978 40.000 0.00 0.00 33.41 2.43
290 291 5.123186 GGGATATGAATCACACGTCACAAAA 59.877 40.000 0.00 0.00 35.42 2.44
291 292 4.634004 GGGATATGAATCACACGTCACAAA 59.366 41.667 0.00 0.00 35.42 2.83
292 293 4.188462 GGGATATGAATCACACGTCACAA 58.812 43.478 0.00 0.00 35.42 3.33
293 294 3.431626 GGGGATATGAATCACACGTCACA 60.432 47.826 0.00 0.00 37.25 3.58
294 295 3.131396 GGGGATATGAATCACACGTCAC 58.869 50.000 0.00 0.00 37.25 3.67
295 296 2.104111 GGGGGATATGAATCACACGTCA 59.896 50.000 0.00 0.00 37.25 4.35
296 297 2.767505 GGGGGATATGAATCACACGTC 58.232 52.381 0.00 0.00 37.25 4.34
297 298 2.930826 GGGGGATATGAATCACACGT 57.069 50.000 0.00 0.00 37.25 4.49
299 300 1.523758 GCGGGGGATATGAATCACAC 58.476 55.000 0.00 0.00 37.25 3.82
300 301 0.400213 GGCGGGGGATATGAATCACA 59.600 55.000 0.00 0.00 37.25 3.58
301 302 0.693049 AGGCGGGGGATATGAATCAC 59.307 55.000 0.00 0.00 34.49 3.06
302 303 0.984230 GAGGCGGGGGATATGAATCA 59.016 55.000 0.00 0.00 33.41 2.57
303 304 0.253327 GGAGGCGGGGGATATGAATC 59.747 60.000 0.00 0.00 0.00 2.52
304 305 0.475632 TGGAGGCGGGGGATATGAAT 60.476 55.000 0.00 0.00 0.00 2.57
305 306 0.475632 ATGGAGGCGGGGGATATGAA 60.476 55.000 0.00 0.00 0.00 2.57
306 307 1.160870 ATGGAGGCGGGGGATATGA 59.839 57.895 0.00 0.00 0.00 2.15
307 308 1.200760 TCATGGAGGCGGGGGATATG 61.201 60.000 0.00 0.00 0.00 1.78
308 309 0.475632 TTCATGGAGGCGGGGGATAT 60.476 55.000 0.00 0.00 0.00 1.63
309 310 1.074090 TTCATGGAGGCGGGGGATA 60.074 57.895 0.00 0.00 0.00 2.59
310 311 2.368192 TTCATGGAGGCGGGGGAT 60.368 61.111 0.00 0.00 0.00 3.85
311 312 3.089874 CTTCATGGAGGCGGGGGA 61.090 66.667 0.00 0.00 0.00 4.81
312 313 4.883354 GCTTCATGGAGGCGGGGG 62.883 72.222 2.40 0.00 0.00 5.40
313 314 3.350031 AAGCTTCATGGAGGCGGGG 62.350 63.158 2.40 0.00 39.66 5.73
314 315 1.821332 GAAGCTTCATGGAGGCGGG 60.821 63.158 21.67 0.00 39.66 6.13
315 316 0.465097 ATGAAGCTTCATGGAGGCGG 60.465 55.000 35.32 0.00 45.63 6.13
316 317 3.091318 ATGAAGCTTCATGGAGGCG 57.909 52.632 35.32 0.00 45.63 5.52
330 331 7.387122 GCTATAGCAGATTCTTCATGACATGAA 59.613 37.037 25.47 25.47 42.84 2.57
331 332 6.872547 GCTATAGCAGATTCTTCATGACATGA 59.127 38.462 20.01 14.24 41.59 3.07
332 333 6.874664 AGCTATAGCAGATTCTTCATGACATG 59.125 38.462 26.07 9.28 45.16 3.21
333 334 6.874664 CAGCTATAGCAGATTCTTCATGACAT 59.125 38.462 26.07 0.00 45.16 3.06
334 335 6.183360 ACAGCTATAGCAGATTCTTCATGACA 60.183 38.462 26.07 0.00 45.16 3.58
335 336 6.222389 ACAGCTATAGCAGATTCTTCATGAC 58.778 40.000 26.07 0.00 45.16 3.06
336 337 6.416631 ACAGCTATAGCAGATTCTTCATGA 57.583 37.500 26.07 0.00 45.16 3.07
337 338 7.493743 AAACAGCTATAGCAGATTCTTCATG 57.506 36.000 26.07 13.49 45.16 3.07
338 339 8.517062 AAAAACAGCTATAGCAGATTCTTCAT 57.483 30.769 26.07 1.91 45.16 2.57
339 340 7.928307 AAAAACAGCTATAGCAGATTCTTCA 57.072 32.000 26.07 0.00 45.16 3.02
363 364 1.722464 CGTCGTATGGAGTGCGAAAAA 59.278 47.619 0.00 0.00 46.37 1.94
364 365 1.342555 CGTCGTATGGAGTGCGAAAA 58.657 50.000 0.00 0.00 46.37 2.29
365 366 0.457166 CCGTCGTATGGAGTGCGAAA 60.457 55.000 0.00 0.00 46.37 3.46
366 367 1.138036 CCGTCGTATGGAGTGCGAA 59.862 57.895 0.00 0.00 46.37 4.70
367 368 0.744057 TACCGTCGTATGGAGTGCGA 60.744 55.000 0.00 0.00 42.76 5.10
368 369 0.099259 TTACCGTCGTATGGAGTGCG 59.901 55.000 0.00 0.00 37.27 5.34
369 370 2.282701 TTTACCGTCGTATGGAGTGC 57.717 50.000 0.00 0.00 0.00 4.40
388 389 9.777575 CAAATTCATTCAAACTGCTTTCTTTTT 57.222 25.926 0.00 0.00 0.00 1.94
389 390 7.911727 GCAAATTCATTCAAACTGCTTTCTTTT 59.088 29.630 0.00 0.00 0.00 2.27
390 391 7.412063 GCAAATTCATTCAAACTGCTTTCTTT 58.588 30.769 0.00 0.00 0.00 2.52
391 392 6.017687 GGCAAATTCATTCAAACTGCTTTCTT 60.018 34.615 0.00 0.00 0.00 2.52
392 393 5.467735 GGCAAATTCATTCAAACTGCTTTCT 59.532 36.000 0.00 0.00 0.00 2.52
393 394 5.334337 GGGCAAATTCATTCAAACTGCTTTC 60.334 40.000 0.00 0.00 0.00 2.62
394 395 4.516321 GGGCAAATTCATTCAAACTGCTTT 59.484 37.500 0.00 0.00 0.00 3.51
395 396 4.067192 GGGCAAATTCATTCAAACTGCTT 58.933 39.130 0.00 0.00 0.00 3.91
396 397 3.071312 TGGGCAAATTCATTCAAACTGCT 59.929 39.130 0.00 0.00 0.00 4.24
397 398 3.401182 TGGGCAAATTCATTCAAACTGC 58.599 40.909 0.00 0.00 0.00 4.40
398 399 5.935789 AGAATGGGCAAATTCATTCAAACTG 59.064 36.000 15.88 0.00 46.86 3.16
399 400 5.935789 CAGAATGGGCAAATTCATTCAAACT 59.064 36.000 15.88 0.00 46.86 2.66
400 401 5.391203 GCAGAATGGGCAAATTCATTCAAAC 60.391 40.000 15.88 5.25 46.86 2.93
401 402 4.696402 GCAGAATGGGCAAATTCATTCAAA 59.304 37.500 15.88 0.00 46.86 2.69
402 403 4.020039 AGCAGAATGGGCAAATTCATTCAA 60.020 37.500 15.88 0.00 46.86 2.69
403 404 3.516300 AGCAGAATGGGCAAATTCATTCA 59.484 39.130 15.88 0.00 46.86 2.57
404 405 4.133013 AGCAGAATGGGCAAATTCATTC 57.867 40.909 12.83 8.75 45.59 2.67
405 406 4.957954 TCTAGCAGAATGGGCAAATTCATT 59.042 37.500 12.83 1.03 38.74 2.57
406 407 4.539726 TCTAGCAGAATGGGCAAATTCAT 58.460 39.130 12.83 3.59 38.74 2.57
407 408 3.949754 CTCTAGCAGAATGGGCAAATTCA 59.050 43.478 12.83 0.00 38.74 2.57
408 409 3.950395 ACTCTAGCAGAATGGGCAAATTC 59.050 43.478 4.46 4.46 36.91 2.17
409 410 3.973425 ACTCTAGCAGAATGGGCAAATT 58.027 40.909 0.00 0.00 35.86 1.82
410 411 3.659183 ACTCTAGCAGAATGGGCAAAT 57.341 42.857 0.00 0.00 35.86 2.32
411 412 3.084039 CAACTCTAGCAGAATGGGCAAA 58.916 45.455 0.00 0.00 35.86 3.68
412 413 2.715046 CAACTCTAGCAGAATGGGCAA 58.285 47.619 0.00 0.00 35.86 4.52
413 414 1.679944 GCAACTCTAGCAGAATGGGCA 60.680 52.381 0.00 0.00 35.86 5.36
414 415 1.020437 GCAACTCTAGCAGAATGGGC 58.980 55.000 0.00 0.00 35.86 5.36
415 416 2.170187 AGAGCAACTCTAGCAGAATGGG 59.830 50.000 0.00 0.00 39.28 4.00
416 417 3.540314 AGAGCAACTCTAGCAGAATGG 57.460 47.619 0.00 0.00 39.28 3.16
417 418 5.900425 TCTTAGAGCAACTCTAGCAGAATG 58.100 41.667 4.64 0.00 42.92 2.67
418 419 6.323482 TGATCTTAGAGCAACTCTAGCAGAAT 59.677 38.462 0.00 1.64 42.92 2.40
419 420 5.654209 TGATCTTAGAGCAACTCTAGCAGAA 59.346 40.000 0.00 0.00 42.92 3.02
420 421 5.196695 TGATCTTAGAGCAACTCTAGCAGA 58.803 41.667 0.00 7.95 42.92 4.26
421 422 5.512753 TGATCTTAGAGCAACTCTAGCAG 57.487 43.478 0.00 1.69 42.92 4.24
422 423 7.286546 AGTTATGATCTTAGAGCAACTCTAGCA 59.713 37.037 3.74 0.00 42.92 3.49
423 424 7.657336 AGTTATGATCTTAGAGCAACTCTAGC 58.343 38.462 3.74 0.00 42.92 3.42
424 425 8.015087 CGAGTTATGATCTTAGAGCAACTCTAG 58.985 40.741 21.98 10.07 42.92 2.43
425 426 7.715686 TCGAGTTATGATCTTAGAGCAACTCTA 59.284 37.037 21.98 13.49 41.50 2.43
426 427 6.544197 TCGAGTTATGATCTTAGAGCAACTCT 59.456 38.462 21.98 13.17 43.83 3.24
427 428 6.730175 TCGAGTTATGATCTTAGAGCAACTC 58.270 40.000 17.45 17.45 34.49 3.01
428 429 6.701145 TCGAGTTATGATCTTAGAGCAACT 57.299 37.500 3.74 4.31 29.85 3.16
429 430 7.269511 CGTATCGAGTTATGATCTTAGAGCAAC 59.730 40.741 3.74 0.00 29.85 4.17
430 431 7.298854 CGTATCGAGTTATGATCTTAGAGCAA 58.701 38.462 3.74 0.00 29.85 3.91
431 432 6.128254 CCGTATCGAGTTATGATCTTAGAGCA 60.128 42.308 1.69 1.69 30.86 4.26
432 433 6.252281 CCGTATCGAGTTATGATCTTAGAGC 58.748 44.000 0.00 0.00 0.00 4.09
433 434 6.252281 GCCGTATCGAGTTATGATCTTAGAG 58.748 44.000 0.00 0.00 0.00 2.43
434 435 5.123502 GGCCGTATCGAGTTATGATCTTAGA 59.876 44.000 0.00 0.00 0.00 2.10
435 436 5.106277 TGGCCGTATCGAGTTATGATCTTAG 60.106 44.000 0.00 0.00 0.00 2.18
436 437 4.763279 TGGCCGTATCGAGTTATGATCTTA 59.237 41.667 0.00 0.00 0.00 2.10
437 438 3.572682 TGGCCGTATCGAGTTATGATCTT 59.427 43.478 0.00 0.00 0.00 2.40
438 439 3.154710 TGGCCGTATCGAGTTATGATCT 58.845 45.455 0.00 0.00 0.00 2.75
439 440 3.570926 TGGCCGTATCGAGTTATGATC 57.429 47.619 0.00 0.00 0.00 2.92
440 441 3.509967 TGATGGCCGTATCGAGTTATGAT 59.490 43.478 0.00 0.00 0.00 2.45
441 442 2.888414 TGATGGCCGTATCGAGTTATGA 59.112 45.455 0.00 0.00 0.00 2.15
442 443 3.297830 TGATGGCCGTATCGAGTTATG 57.702 47.619 0.00 0.00 0.00 1.90
443 444 3.509967 TGATGATGGCCGTATCGAGTTAT 59.490 43.478 0.00 0.00 0.00 1.89
444 445 2.888414 TGATGATGGCCGTATCGAGTTA 59.112 45.455 0.00 0.00 0.00 2.24
445 446 1.686587 TGATGATGGCCGTATCGAGTT 59.313 47.619 0.00 0.00 0.00 3.01
446 447 1.000163 GTGATGATGGCCGTATCGAGT 60.000 52.381 0.00 0.00 0.00 4.18
447 448 1.702886 GTGATGATGGCCGTATCGAG 58.297 55.000 0.00 0.00 0.00 4.04
448 449 0.039527 CGTGATGATGGCCGTATCGA 60.040 55.000 0.00 0.00 0.00 3.59
449 450 0.318699 ACGTGATGATGGCCGTATCG 60.319 55.000 0.00 1.32 0.00 2.92
450 451 1.139989 CACGTGATGATGGCCGTATC 58.860 55.000 10.90 1.73 31.42 2.24
451 452 0.249868 CCACGTGATGATGGCCGTAT 60.250 55.000 19.30 0.00 31.42 3.06
452 453 1.142965 CCACGTGATGATGGCCGTA 59.857 57.895 19.30 0.00 31.42 4.02
453 454 2.125147 CCACGTGATGATGGCCGT 60.125 61.111 19.30 0.00 0.00 5.68
454 455 2.173669 GTCCACGTGATGATGGCCG 61.174 63.158 19.30 0.00 35.81 6.13
455 456 2.173669 CGTCCACGTGATGATGGCC 61.174 63.158 19.30 0.00 35.81 5.36
456 457 2.173669 CCGTCCACGTGATGATGGC 61.174 63.158 19.30 0.00 35.81 4.40
457 458 0.806102 GACCGTCCACGTGATGATGG 60.806 60.000 23.65 23.65 42.31 3.51
458 459 0.173481 AGACCGTCCACGTGATGATG 59.827 55.000 19.30 11.88 37.74 3.07
459 460 1.758936 TAGACCGTCCACGTGATGAT 58.241 50.000 19.30 0.00 37.74 2.45
460 461 1.471287 CTTAGACCGTCCACGTGATGA 59.529 52.381 19.30 3.34 37.74 2.92
461 462 1.471287 TCTTAGACCGTCCACGTGATG 59.529 52.381 19.30 8.58 37.74 3.07
462 463 1.830279 TCTTAGACCGTCCACGTGAT 58.170 50.000 19.30 0.00 37.74 3.06
463 464 1.471287 CATCTTAGACCGTCCACGTGA 59.529 52.381 19.30 0.00 37.74 4.35
464 465 1.471287 TCATCTTAGACCGTCCACGTG 59.529 52.381 9.08 9.08 37.74 4.49
465 466 1.743958 CTCATCTTAGACCGTCCACGT 59.256 52.381 0.00 0.00 37.74 4.49
466 467 1.065701 CCTCATCTTAGACCGTCCACG 59.934 57.143 0.00 0.00 39.44 4.94
467 468 1.202428 GCCTCATCTTAGACCGTCCAC 60.202 57.143 0.00 0.00 0.00 4.02
468 469 1.112113 GCCTCATCTTAGACCGTCCA 58.888 55.000 0.00 0.00 0.00 4.02
469 470 1.404843 AGCCTCATCTTAGACCGTCC 58.595 55.000 0.00 0.00 0.00 4.79
470 471 2.031857 CGTAGCCTCATCTTAGACCGTC 60.032 54.545 0.00 0.00 0.00 4.79
471 472 1.948145 CGTAGCCTCATCTTAGACCGT 59.052 52.381 0.00 0.00 0.00 4.83
472 473 2.690173 CGTAGCCTCATCTTAGACCG 57.310 55.000 0.00 0.00 0.00 4.79
488 489 0.321210 CATGTGGTGGAAGGTGCGTA 60.321 55.000 0.00 0.00 0.00 4.42
542 544 2.027625 CGAGAGCGAAAAGGGCGTT 61.028 57.895 0.00 0.00 40.82 4.84
543 545 2.432628 CGAGAGCGAAAAGGGCGT 60.433 61.111 0.00 0.00 40.82 5.68
585 587 1.002921 GGGAATGGGGAAAAGGGGG 59.997 63.158 0.00 0.00 0.00 5.40
593 595 3.644465 TAGCGGTGGGGAATGGGGA 62.644 63.158 0.00 0.00 0.00 4.81
797 799 1.272425 TGCAATTTCTGGAATCCCGGT 60.272 47.619 0.00 0.00 39.88 5.28
865 867 1.070134 CTGAAACCGAAGAGGACACCA 59.930 52.381 0.00 0.00 45.00 4.17
997 1002 0.109597 CGGAACACAAAGCTCATGGC 60.110 55.000 4.67 0.00 42.19 4.40
1075 1080 4.520111 CACAGAACAGAAATTCACCATGGA 59.480 41.667 21.47 0.00 0.00 3.41
1307 1344 4.466015 ACAAGAACTGGCCAAGAAAAAGAA 59.534 37.500 7.01 0.00 0.00 2.52
1308 1345 4.023291 ACAAGAACTGGCCAAGAAAAAGA 58.977 39.130 7.01 0.00 0.00 2.52
1309 1346 4.391405 ACAAGAACTGGCCAAGAAAAAG 57.609 40.909 7.01 0.00 0.00 2.27
1332 1369 2.930887 GCGAGCTCAGTACCATGAACAA 60.931 50.000 15.40 0.00 0.00 2.83
1467 1504 6.038714 CCAAAGCTACAAAAAGAGACAGTTCT 59.961 38.462 0.00 0.00 33.37 3.01
1787 1824 5.753438 AGCATCATAATCTGCAAGCAAAATG 59.247 36.000 0.00 0.00 40.88 2.32
1829 1866 1.408683 GGAGCATGTGGGCTATTGTCA 60.409 52.381 0.00 0.00 45.99 3.58
2392 2430 0.694771 AGTCCAGACCATGCATGTGT 59.305 50.000 24.58 20.65 0.00 3.72
2426 2464 4.749245 AATACTGAAAACAAGGACTGCG 57.251 40.909 0.00 0.00 0.00 5.18
2509 2547 1.202521 ACACTGCACGTCAACTCATCA 60.203 47.619 0.00 0.00 0.00 3.07
2548 2586 2.398498 CTTCTCAATAGATCACCCGCG 58.602 52.381 0.00 0.00 0.00 6.46
2868 2906 7.285858 ACAAGTAATACAGATCAGAGGGAGTAC 59.714 40.741 0.00 0.00 0.00 2.73
2883 2921 6.263516 ACTAAGTGAGCGACAAGTAATACA 57.736 37.500 0.00 0.00 0.00 2.29
2923 2961 6.989155 ATAATGTACTCCCTTCGAACCATA 57.011 37.500 0.00 0.00 0.00 2.74
2924 2962 5.888982 ATAATGTACTCCCTTCGAACCAT 57.111 39.130 0.00 0.00 0.00 3.55
2925 2963 5.687166 AATAATGTACTCCCTTCGAACCA 57.313 39.130 0.00 0.00 0.00 3.67
2926 2964 5.878669 ACAAATAATGTACTCCCTTCGAACC 59.121 40.000 0.00 0.00 41.63 3.62
3003 3149 0.179045 ATGCATACGGAAGGGAGTGC 60.179 55.000 0.00 0.00 0.00 4.40
3095 3265 0.681175 ACTGCAAAACAAGATGGGGC 59.319 50.000 0.00 0.00 0.00 5.80
3182 3352 2.562912 CCATGCCACACGTTGCTC 59.437 61.111 0.00 0.00 0.00 4.26
3270 3446 3.260632 TGGGTTTTCCGTTAGTACTACCC 59.739 47.826 16.31 16.31 43.39 3.69
3303 3479 1.003696 GGCAGGACTAAACAGCTCCTT 59.996 52.381 0.00 0.00 31.58 3.36
3305 3481 0.741221 CGGCAGGACTAAACAGCTCC 60.741 60.000 0.00 0.00 0.00 4.70
3339 3515 2.076863 GAAGGAACTGGGAACACATCG 58.923 52.381 0.00 0.00 40.86 3.84
3363 3539 5.245751 ACCTTTGGATGCATAAACATCACAA 59.754 36.000 0.00 5.83 46.81 3.33
3419 3596 0.674895 ACAAGATCTTGACCGGCAGC 60.675 55.000 36.15 0.00 42.93 5.25
3435 3612 2.411628 ACGCACCCTGCATTATACAA 57.588 45.000 0.00 0.00 45.36 2.41
3440 3617 2.627945 CTTTCTACGCACCCTGCATTA 58.372 47.619 0.00 0.00 45.36 1.90
3484 3661 0.107456 AGGCTGTTGGACACACTCTG 59.893 55.000 0.00 0.00 0.00 3.35
3494 3671 1.757306 ACAGTCCTCAGGCTGTTGG 59.243 57.895 15.27 17.17 42.61 3.77
3497 3674 2.062070 GGAACAGTCCTCAGGCTGT 58.938 57.895 15.27 13.35 46.61 4.40
3509 3686 3.019564 GTGGGGATGAAATGAGGAACAG 58.980 50.000 0.00 0.00 0.00 3.16
3511 3688 3.085952 TGTGGGGATGAAATGAGGAAC 57.914 47.619 0.00 0.00 0.00 3.62
3531 4092 7.122650 CCAACATAAAATGAGGTTGTCCACTAT 59.877 37.037 0.00 0.00 39.00 2.12
3535 4096 4.526262 CCCAACATAAAATGAGGTTGTCCA 59.474 41.667 0.00 0.00 39.00 4.02
3555 4116 3.689347 CAGACAACCTCATTTCATCCCA 58.311 45.455 0.00 0.00 0.00 4.37
3575 4136 1.001020 CTGTTGGGCCCACATAGCA 60.001 57.895 28.70 17.07 0.00 3.49


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.