Multiple sequence alignment - TraesCS4A01G094900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G094900 chr4A 100.000 3715 0 0 1 3715 103334263 103330549 0.000000e+00 6861.0
1 TraesCS4A01G094900 chr4B 91.308 2301 105 25 692 2984 447364843 447367056 0.000000e+00 3053.0
2 TraesCS4A01G094900 chr4B 90.291 206 10 3 479 675 447364578 447364782 1.020000e-65 261.0
3 TraesCS4A01G094900 chr4B 76.042 192 40 6 2722 2911 168957477 168957290 1.100000e-15 95.3
4 TraesCS4A01G094900 chr4D 96.052 1697 44 8 1123 2816 361978886 361980562 0.000000e+00 2741.0
5 TraesCS4A01G094900 chr4D 93.525 417 13 5 674 1084 361978481 361978889 3.170000e-170 608.0
6 TraesCS4A01G094900 chr4D 97.980 198 3 1 479 675 361978230 361978427 3.550000e-90 342.0
7 TraesCS4A01G094900 chr5A 91.614 477 38 2 2 477 655715957 655716432 0.000000e+00 658.0
8 TraesCS4A01G094900 chr5A 91.195 477 40 2 2 477 655786869 655787344 0.000000e+00 647.0
9 TraesCS4A01G094900 chr5A 91.195 477 40 2 2 477 655861064 655861539 0.000000e+00 647.0
10 TraesCS4A01G094900 chr5A 86.435 575 51 11 3166 3713 555929995 555930569 4.100000e-169 604.0
11 TraesCS4A01G094900 chr5A 91.795 195 15 1 2974 3168 555929665 555929858 1.700000e-68 270.0
12 TraesCS4A01G094900 chr6A 91.597 476 38 2 3 477 366521448 366521922 0.000000e+00 656.0
13 TraesCS4A01G094900 chr6A 86.345 476 56 8 4 477 1103590 1103122 9.200000e-141 510.0
14 TraesCS4A01G094900 chr6A 80.919 283 38 3 2615 2896 178249578 178249845 3.760000e-50 209.0
15 TraesCS4A01G094900 chr2D 88.075 478 52 5 2 477 388274427 388274901 2.510000e-156 562.0
16 TraesCS4A01G094900 chr2D 94.000 50 3 0 1185 1234 546807565 546807516 3.980000e-10 76.8
17 TraesCS4A01G094900 chr3D 87.029 478 56 6 1 477 374957626 374957154 5.460000e-148 534.0
18 TraesCS4A01G094900 chr2B 85.597 486 58 12 1 480 177653869 177654348 1.990000e-137 499.0
19 TraesCS4A01G094900 chr2B 75.676 222 34 12 1314 1516 653446685 653446465 3.950000e-15 93.5
20 TraesCS4A01G094900 chr7D 85.447 481 66 3 1 478 80690212 80689733 7.170000e-137 497.0
21 TraesCS4A01G094900 chr7D 76.804 194 40 5 2694 2885 190164163 190163973 1.830000e-18 104.0
22 TraesCS4A01G094900 chr6B 90.000 350 33 2 2974 3323 387226241 387225894 5.660000e-123 451.0
23 TraesCS4A01G094900 chr6B 91.414 198 15 2 479 675 546430130 546430326 1.700000e-68 270.0
24 TraesCS4A01G094900 chr2A 94.000 50 3 0 1185 1234 689760401 689760450 3.980000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G094900 chr4A 103330549 103334263 3714 True 6861.000000 6861 100.000000 1 3715 1 chr4A.!!$R1 3714
1 TraesCS4A01G094900 chr4B 447364578 447367056 2478 False 1657.000000 3053 90.799500 479 2984 2 chr4B.!!$F1 2505
2 TraesCS4A01G094900 chr4D 361978230 361980562 2332 False 1230.333333 2741 95.852333 479 2816 3 chr4D.!!$F1 2337
3 TraesCS4A01G094900 chr5A 555929665 555930569 904 False 437.000000 604 89.115000 2974 3713 2 chr5A.!!$F4 739

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
465 466 0.034476 AGTTCCGTTCGTTTCCCCTC 59.966 55.0 0.0 0.0 0.0 4.30 F
724 790 0.248012 TGCTCGTGATTTTCCGGCTA 59.752 50.0 0.0 0.0 0.0 3.93 F
1051 1123 0.315251 CCTCAGTCAGTCAACAGCGA 59.685 55.0 0.0 0.0 0.0 4.93 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1987 2059 0.179067 TCGAGGCCGTGTCTTTTTGT 60.179 50.000 0.0 0.0 37.05 2.83 R
2218 2290 0.975040 GCCTCTCCCTCAGCTTCTCA 60.975 60.000 0.0 0.0 0.00 3.27 R
2922 2998 1.257936 CCGCTGTTATCATGTGTACGC 59.742 52.381 0.0 0.0 0.00 4.42 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 3.678915 GGAACTTTCCGTTTTCGTGAA 57.321 42.857 0.00 0.00 42.35 3.18
22 23 4.219143 GGAACTTTCCGTTTTCGTGAAT 57.781 40.909 0.00 0.00 42.35 2.57
23 24 5.347012 GGAACTTTCCGTTTTCGTGAATA 57.653 39.130 0.00 0.00 42.35 1.75
24 25 5.934921 GGAACTTTCCGTTTTCGTGAATAT 58.065 37.500 0.00 0.00 42.35 1.28
25 26 5.793457 GGAACTTTCCGTTTTCGTGAATATG 59.207 40.000 0.00 0.00 42.35 1.78
26 27 5.291293 ACTTTCCGTTTTCGTGAATATGG 57.709 39.130 5.29 5.29 42.35 2.74
27 28 4.998672 ACTTTCCGTTTTCGTGAATATGGA 59.001 37.500 9.17 9.17 42.35 3.41
28 29 5.470777 ACTTTCCGTTTTCGTGAATATGGAA 59.529 36.000 17.43 17.43 42.00 3.53
29 30 6.150474 ACTTTCCGTTTTCGTGAATATGGAAT 59.850 34.615 20.25 9.51 42.66 3.01
30 31 6.503589 TTCCGTTTTCGTGAATATGGAATT 57.496 33.333 17.43 0.00 40.24 2.17
31 32 6.503589 TCCGTTTTCGTGAATATGGAATTT 57.496 33.333 10.40 0.00 42.35 1.82
32 33 6.915349 TCCGTTTTCGTGAATATGGAATTTT 58.085 32.000 10.40 0.00 42.35 1.82
33 34 7.024768 TCCGTTTTCGTGAATATGGAATTTTC 58.975 34.615 10.40 0.00 42.35 2.29
34 35 6.021782 CCGTTTTCGTGAATATGGAATTTTCG 60.022 38.462 5.64 0.00 42.35 3.46
35 36 6.521821 CGTTTTCGTGAATATGGAATTTTCGT 59.478 34.615 0.00 0.00 37.13 3.85
36 37 7.060174 CGTTTTCGTGAATATGGAATTTTCGTT 59.940 33.333 0.00 0.00 37.13 3.85
37 38 8.696175 GTTTTCGTGAATATGGAATTTTCGTTT 58.304 29.630 0.00 0.00 37.13 3.60
38 39 8.804688 TTTCGTGAATATGGAATTTTCGTTTT 57.195 26.923 0.00 0.00 37.13 2.43
39 40 8.804688 TTCGTGAATATGGAATTTTCGTTTTT 57.195 26.923 0.00 0.00 37.13 1.94
40 41 9.894783 TTCGTGAATATGGAATTTTCGTTTTTA 57.105 25.926 0.00 0.00 37.13 1.52
41 42 9.332301 TCGTGAATATGGAATTTTCGTTTTTAC 57.668 29.630 0.00 0.00 37.13 2.01
42 43 9.337091 CGTGAATATGGAATTTTCGTTTTTACT 57.663 29.630 0.00 0.00 37.13 2.24
56 57 9.826574 TTTCGTTTTTACTATAGACATATGGCT 57.173 29.630 17.06 17.06 37.13 4.75
58 59 9.903682 TCGTTTTTACTATAGACATATGGCTAC 57.096 33.333 20.76 6.36 38.71 3.58
59 60 9.909644 CGTTTTTACTATAGACATATGGCTACT 57.090 33.333 20.76 12.07 38.71 2.57
73 74 9.860650 ACATATGGCTACTTTATAATTCAACCA 57.139 29.630 7.80 0.00 0.00 3.67
77 78 9.914834 ATGGCTACTTTATAATTCAACCACTAA 57.085 29.630 0.00 0.00 0.00 2.24
78 79 9.742144 TGGCTACTTTATAATTCAACCACTAAA 57.258 29.630 0.00 0.00 0.00 1.85
79 80 9.999009 GGCTACTTTATAATTCAACCACTAAAC 57.001 33.333 0.00 0.00 0.00 2.01
86 87 9.953697 TTATAATTCAACCACTAAACAACACAC 57.046 29.630 0.00 0.00 0.00 3.82
87 88 5.906113 ATTCAACCACTAAACAACACACA 57.094 34.783 0.00 0.00 0.00 3.72
88 89 5.707242 TTCAACCACTAAACAACACACAA 57.293 34.783 0.00 0.00 0.00 3.33
89 90 5.303747 TCAACCACTAAACAACACACAAG 57.696 39.130 0.00 0.00 0.00 3.16
90 91 4.762765 TCAACCACTAAACAACACACAAGT 59.237 37.500 0.00 0.00 0.00 3.16
91 92 5.938710 TCAACCACTAAACAACACACAAGTA 59.061 36.000 0.00 0.00 0.00 2.24
92 93 6.600032 TCAACCACTAAACAACACACAAGTAT 59.400 34.615 0.00 0.00 0.00 2.12
93 94 7.769507 TCAACCACTAAACAACACACAAGTATA 59.230 33.333 0.00 0.00 0.00 1.47
94 95 7.486802 ACCACTAAACAACACACAAGTATAC 57.513 36.000 0.00 0.00 0.00 1.47
95 96 7.049133 ACCACTAAACAACACACAAGTATACA 58.951 34.615 5.50 0.00 0.00 2.29
96 97 7.553402 ACCACTAAACAACACACAAGTATACAA 59.447 33.333 5.50 0.00 0.00 2.41
97 98 8.564574 CCACTAAACAACACACAAGTATACAAT 58.435 33.333 5.50 0.00 0.00 2.71
98 99 9.381027 CACTAAACAACACACAAGTATACAATG 57.619 33.333 5.50 6.40 0.00 2.82
99 100 9.332502 ACTAAACAACACACAAGTATACAATGA 57.667 29.630 13.69 0.00 0.00 2.57
100 101 9.811655 CTAAACAACACACAAGTATACAATGAG 57.188 33.333 13.69 9.26 0.00 2.90
101 102 7.801716 AACAACACACAAGTATACAATGAGT 57.198 32.000 13.69 9.79 0.00 3.41
102 103 8.896320 AACAACACACAAGTATACAATGAGTA 57.104 30.769 13.69 0.00 37.06 2.59
103 104 8.534333 ACAACACACAAGTATACAATGAGTAG 57.466 34.615 13.69 9.66 35.85 2.57
104 105 8.364894 ACAACACACAAGTATACAATGAGTAGA 58.635 33.333 13.69 0.00 35.85 2.59
105 106 9.203421 CAACACACAAGTATACAATGAGTAGAA 57.797 33.333 13.69 0.00 35.85 2.10
106 107 9.944376 AACACACAAGTATACAATGAGTAGAAT 57.056 29.630 13.69 0.04 35.85 2.40
107 108 9.371136 ACACACAAGTATACAATGAGTAGAATG 57.629 33.333 13.69 4.49 35.85 2.67
108 109 9.586435 CACACAAGTATACAATGAGTAGAATGA 57.414 33.333 13.69 0.00 35.85 2.57
120 121 9.674824 CAATGAGTAGAATGAATCATTTTAGCC 57.325 33.333 10.09 4.52 39.68 3.93
121 122 7.807977 TGAGTAGAATGAATCATTTTAGCCC 57.192 36.000 10.09 0.00 33.90 5.19
122 123 7.345691 TGAGTAGAATGAATCATTTTAGCCCA 58.654 34.615 10.09 4.63 33.90 5.36
123 124 7.833682 TGAGTAGAATGAATCATTTTAGCCCAA 59.166 33.333 10.09 0.00 33.90 4.12
124 125 8.000780 AGTAGAATGAATCATTTTAGCCCAAC 57.999 34.615 10.09 0.00 33.90 3.77
125 126 6.855763 AGAATGAATCATTTTAGCCCAACA 57.144 33.333 10.09 0.00 33.90 3.33
126 127 7.427989 AGAATGAATCATTTTAGCCCAACAT 57.572 32.000 10.09 0.00 33.90 2.71
127 128 7.854337 AGAATGAATCATTTTAGCCCAACATT 58.146 30.769 10.09 0.00 33.90 2.71
128 129 8.323567 AGAATGAATCATTTTAGCCCAACATTT 58.676 29.630 10.09 0.00 33.90 2.32
129 130 9.598517 GAATGAATCATTTTAGCCCAACATTTA 57.401 29.630 10.09 0.00 33.90 1.40
130 131 8.947055 ATGAATCATTTTAGCCCAACATTTAC 57.053 30.769 0.00 0.00 0.00 2.01
131 132 8.133024 TGAATCATTTTAGCCCAACATTTACT 57.867 30.769 0.00 0.00 0.00 2.24
132 133 9.249053 TGAATCATTTTAGCCCAACATTTACTA 57.751 29.630 0.00 0.00 0.00 1.82
133 134 9.516314 GAATCATTTTAGCCCAACATTTACTAC 57.484 33.333 0.00 0.00 0.00 2.73
134 135 8.823220 ATCATTTTAGCCCAACATTTACTACT 57.177 30.769 0.00 0.00 0.00 2.57
135 136 9.914834 ATCATTTTAGCCCAACATTTACTACTA 57.085 29.630 0.00 0.00 0.00 1.82
136 137 9.169592 TCATTTTAGCCCAACATTTACTACTAC 57.830 33.333 0.00 0.00 0.00 2.73
137 138 8.952278 CATTTTAGCCCAACATTTACTACTACA 58.048 33.333 0.00 0.00 0.00 2.74
138 139 7.910441 TTTAGCCCAACATTTACTACTACAC 57.090 36.000 0.00 0.00 0.00 2.90
139 140 5.492855 AGCCCAACATTTACTACTACACA 57.507 39.130 0.00 0.00 0.00 3.72
140 141 6.062258 AGCCCAACATTTACTACTACACAT 57.938 37.500 0.00 0.00 0.00 3.21
141 142 5.880332 AGCCCAACATTTACTACTACACATG 59.120 40.000 0.00 0.00 0.00 3.21
142 143 5.646360 GCCCAACATTTACTACTACACATGT 59.354 40.000 0.00 0.00 0.00 3.21
143 144 6.819649 GCCCAACATTTACTACTACACATGTA 59.180 38.462 0.00 0.00 0.00 2.29
144 145 7.201582 GCCCAACATTTACTACTACACATGTAC 60.202 40.741 0.00 0.00 0.00 2.90
145 146 8.038944 CCCAACATTTACTACTACACATGTACT 58.961 37.037 0.00 0.00 0.00 2.73
146 147 9.084164 CCAACATTTACTACTACACATGTACTC 57.916 37.037 0.00 0.00 0.00 2.59
147 148 9.634163 CAACATTTACTACTACACATGTACTCA 57.366 33.333 0.00 0.00 0.00 3.41
148 149 9.856488 AACATTTACTACTACACATGTACTCAG 57.144 33.333 0.00 0.00 0.00 3.35
149 150 7.974501 ACATTTACTACTACACATGTACTCAGC 59.025 37.037 0.00 0.00 0.00 4.26
150 151 7.698506 TTTACTACTACACATGTACTCAGCT 57.301 36.000 0.00 0.00 0.00 4.24
151 152 7.698506 TTACTACTACACATGTACTCAGCTT 57.301 36.000 0.00 0.00 0.00 3.74
152 153 5.955488 ACTACTACACATGTACTCAGCTTG 58.045 41.667 0.00 0.00 0.00 4.01
153 154 5.710567 ACTACTACACATGTACTCAGCTTGA 59.289 40.000 0.00 0.00 0.00 3.02
154 155 4.810790 ACTACACATGTACTCAGCTTGAC 58.189 43.478 0.00 0.00 0.00 3.18
155 156 3.045601 ACACATGTACTCAGCTTGACC 57.954 47.619 0.00 0.00 0.00 4.02
156 157 2.289694 ACACATGTACTCAGCTTGACCC 60.290 50.000 0.00 0.00 0.00 4.46
157 158 2.027745 CACATGTACTCAGCTTGACCCT 60.028 50.000 0.00 0.00 0.00 4.34
158 159 3.195610 CACATGTACTCAGCTTGACCCTA 59.804 47.826 0.00 0.00 0.00 3.53
159 160 4.033709 ACATGTACTCAGCTTGACCCTAT 58.966 43.478 0.00 0.00 0.00 2.57
160 161 5.069119 CACATGTACTCAGCTTGACCCTATA 59.931 44.000 0.00 0.00 0.00 1.31
161 162 5.069251 ACATGTACTCAGCTTGACCCTATAC 59.931 44.000 0.00 0.00 0.00 1.47
162 163 3.630769 TGTACTCAGCTTGACCCTATACG 59.369 47.826 0.00 0.00 0.00 3.06
163 164 2.736347 ACTCAGCTTGACCCTATACGT 58.264 47.619 0.00 0.00 0.00 3.57
164 165 3.894759 ACTCAGCTTGACCCTATACGTA 58.105 45.455 0.00 0.00 0.00 3.57
165 166 4.275810 ACTCAGCTTGACCCTATACGTAA 58.724 43.478 0.00 0.00 0.00 3.18
166 167 4.894114 ACTCAGCTTGACCCTATACGTAAT 59.106 41.667 0.00 0.00 0.00 1.89
167 168 5.363005 ACTCAGCTTGACCCTATACGTAATT 59.637 40.000 0.00 0.00 0.00 1.40
168 169 5.597806 TCAGCTTGACCCTATACGTAATTG 58.402 41.667 0.00 0.00 0.00 2.32
169 170 5.128171 TCAGCTTGACCCTATACGTAATTGT 59.872 40.000 0.00 0.00 0.00 2.71
170 171 5.462398 CAGCTTGACCCTATACGTAATTGTC 59.538 44.000 0.00 5.26 0.00 3.18
171 172 4.748600 GCTTGACCCTATACGTAATTGTCC 59.251 45.833 0.00 0.00 0.00 4.02
172 173 5.682990 GCTTGACCCTATACGTAATTGTCCA 60.683 44.000 0.00 0.00 0.00 4.02
173 174 5.524971 TGACCCTATACGTAATTGTCCAG 57.475 43.478 0.00 0.00 0.00 3.86
174 175 4.957954 TGACCCTATACGTAATTGTCCAGT 59.042 41.667 0.00 0.00 0.00 4.00
175 176 6.128486 TGACCCTATACGTAATTGTCCAGTA 58.872 40.000 0.00 0.00 0.00 2.74
176 177 6.039717 TGACCCTATACGTAATTGTCCAGTAC 59.960 42.308 0.00 0.00 0.00 2.73
177 178 6.131961 ACCCTATACGTAATTGTCCAGTACT 58.868 40.000 0.00 0.00 0.00 2.73
178 179 7.290061 ACCCTATACGTAATTGTCCAGTACTA 58.710 38.462 0.00 0.00 0.00 1.82
179 180 7.229506 ACCCTATACGTAATTGTCCAGTACTAC 59.770 40.741 0.00 0.00 0.00 2.73
180 181 7.446625 CCCTATACGTAATTGTCCAGTACTACT 59.553 40.741 0.00 0.00 0.00 2.57
181 182 9.494271 CCTATACGTAATTGTCCAGTACTACTA 57.506 37.037 0.00 0.00 0.00 1.82
183 184 8.737168 ATACGTAATTGTCCAGTACTACTACA 57.263 34.615 0.00 0.00 0.00 2.74
184 185 7.452880 ACGTAATTGTCCAGTACTACTACAA 57.547 36.000 15.26 15.26 32.98 2.41
185 186 8.059798 ACGTAATTGTCCAGTACTACTACAAT 57.940 34.615 17.49 17.49 38.40 2.71
186 187 9.177608 ACGTAATTGTCCAGTACTACTACAATA 57.822 33.333 20.95 12.04 36.76 1.90
187 188 9.443283 CGTAATTGTCCAGTACTACTACAATAC 57.557 37.037 20.95 17.86 36.76 1.89
191 192 7.776933 TGTCCAGTACTACTACAATACTACG 57.223 40.000 0.00 0.00 0.00 3.51
192 193 6.258727 TGTCCAGTACTACTACAATACTACGC 59.741 42.308 0.00 0.00 0.00 4.42
193 194 6.481644 GTCCAGTACTACTACAATACTACGCT 59.518 42.308 0.00 0.00 0.00 5.07
194 195 7.653713 GTCCAGTACTACTACAATACTACGCTA 59.346 40.741 0.00 0.00 0.00 4.26
195 196 8.204160 TCCAGTACTACTACAATACTACGCTAA 58.796 37.037 0.00 0.00 0.00 3.09
196 197 8.494347 CCAGTACTACTACAATACTACGCTAAG 58.506 40.741 0.00 0.00 0.00 2.18
197 198 9.039870 CAGTACTACTACAATACTACGCTAAGT 57.960 37.037 0.00 0.00 0.00 2.24
198 199 9.606631 AGTACTACTACAATACTACGCTAAGTT 57.393 33.333 0.00 0.00 0.00 2.66
201 202 9.606631 ACTACTACAATACTACGCTAAGTTACT 57.393 33.333 0.00 0.00 0.00 2.24
278 279 8.691661 ATGTTTTGTGTGTATTTCTCTAAGGT 57.308 30.769 0.00 0.00 0.00 3.50
279 280 8.514330 TGTTTTGTGTGTATTTCTCTAAGGTT 57.486 30.769 0.00 0.00 0.00 3.50
280 281 8.962679 TGTTTTGTGTGTATTTCTCTAAGGTTT 58.037 29.630 0.00 0.00 0.00 3.27
284 285 8.842358 TGTGTGTATTTCTCTAAGGTTTAAGG 57.158 34.615 0.00 0.00 0.00 2.69
285 286 7.881232 TGTGTGTATTTCTCTAAGGTTTAAGGG 59.119 37.037 0.00 0.00 0.00 3.95
286 287 7.881751 GTGTGTATTTCTCTAAGGTTTAAGGGT 59.118 37.037 0.00 0.00 0.00 4.34
287 288 8.442374 TGTGTATTTCTCTAAGGTTTAAGGGTT 58.558 33.333 0.00 0.00 0.00 4.11
288 289 9.293404 GTGTATTTCTCTAAGGTTTAAGGGTTT 57.707 33.333 0.00 0.00 0.00 3.27
289 290 9.871175 TGTATTTCTCTAAGGTTTAAGGGTTTT 57.129 29.630 0.00 0.00 0.00 2.43
309 310 3.569250 TTTTAGCTTCCGGTCAAATGC 57.431 42.857 0.00 0.00 0.00 3.56
310 311 1.459450 TTAGCTTCCGGTCAAATGCC 58.541 50.000 0.00 0.00 0.00 4.40
311 312 0.393808 TAGCTTCCGGTCAAATGCCC 60.394 55.000 0.00 0.00 0.00 5.36
312 313 1.678970 GCTTCCGGTCAAATGCCCT 60.679 57.895 0.00 0.00 0.00 5.19
313 314 1.657751 GCTTCCGGTCAAATGCCCTC 61.658 60.000 0.00 0.00 0.00 4.30
314 315 0.035056 CTTCCGGTCAAATGCCCTCT 60.035 55.000 0.00 0.00 0.00 3.69
315 316 0.404040 TTCCGGTCAAATGCCCTCTT 59.596 50.000 0.00 0.00 0.00 2.85
316 317 0.404040 TCCGGTCAAATGCCCTCTTT 59.596 50.000 0.00 0.00 0.00 2.52
317 318 1.203001 TCCGGTCAAATGCCCTCTTTT 60.203 47.619 0.00 0.00 0.00 2.27
318 319 1.067635 CCGGTCAAATGCCCTCTTTTG 60.068 52.381 0.00 0.00 38.17 2.44
319 320 1.613437 CGGTCAAATGCCCTCTTTTGT 59.387 47.619 0.00 0.00 38.07 2.83
320 321 2.035832 CGGTCAAATGCCCTCTTTTGTT 59.964 45.455 0.00 0.00 38.07 2.83
321 322 3.492482 CGGTCAAATGCCCTCTTTTGTTT 60.492 43.478 0.00 0.00 38.07 2.83
322 323 4.058124 GGTCAAATGCCCTCTTTTGTTTC 58.942 43.478 0.00 0.00 38.07 2.78
323 324 4.058124 GTCAAATGCCCTCTTTTGTTTCC 58.942 43.478 0.00 0.00 38.07 3.13
324 325 3.059166 CAAATGCCCTCTTTTGTTTCCG 58.941 45.455 0.00 0.00 34.50 4.30
325 326 1.995376 ATGCCCTCTTTTGTTTCCGT 58.005 45.000 0.00 0.00 0.00 4.69
326 327 1.028905 TGCCCTCTTTTGTTTCCGTG 58.971 50.000 0.00 0.00 0.00 4.94
327 328 1.029681 GCCCTCTTTTGTTTCCGTGT 58.970 50.000 0.00 0.00 0.00 4.49
328 329 1.001706 GCCCTCTTTTGTTTCCGTGTC 60.002 52.381 0.00 0.00 0.00 3.67
329 330 1.607148 CCCTCTTTTGTTTCCGTGTCC 59.393 52.381 0.00 0.00 0.00 4.02
330 331 1.263217 CCTCTTTTGTTTCCGTGTCCG 59.737 52.381 0.00 0.00 0.00 4.79
331 332 1.937899 CTCTTTTGTTTCCGTGTCCGT 59.062 47.619 0.00 0.00 0.00 4.69
332 333 2.353579 CTCTTTTGTTTCCGTGTCCGTT 59.646 45.455 0.00 0.00 0.00 4.44
333 334 2.748532 TCTTTTGTTTCCGTGTCCGTTT 59.251 40.909 0.00 0.00 0.00 3.60
334 335 3.190953 TCTTTTGTTTCCGTGTCCGTTTT 59.809 39.130 0.00 0.00 0.00 2.43
335 336 2.546195 TTGTTTCCGTGTCCGTTTTG 57.454 45.000 0.00 0.00 0.00 2.44
336 337 1.451067 TGTTTCCGTGTCCGTTTTGT 58.549 45.000 0.00 0.00 0.00 2.83
337 338 2.625737 TGTTTCCGTGTCCGTTTTGTA 58.374 42.857 0.00 0.00 0.00 2.41
338 339 3.204526 TGTTTCCGTGTCCGTTTTGTAT 58.795 40.909 0.00 0.00 0.00 2.29
339 340 3.626670 TGTTTCCGTGTCCGTTTTGTATT 59.373 39.130 0.00 0.00 0.00 1.89
340 341 4.213674 GTTTCCGTGTCCGTTTTGTATTC 58.786 43.478 0.00 0.00 0.00 1.75
341 342 3.109044 TCCGTGTCCGTTTTGTATTCA 57.891 42.857 0.00 0.00 0.00 2.57
342 343 2.801679 TCCGTGTCCGTTTTGTATTCAC 59.198 45.455 0.00 0.00 0.00 3.18
343 344 2.803956 CCGTGTCCGTTTTGTATTCACT 59.196 45.455 0.00 0.00 0.00 3.41
344 345 3.120786 CCGTGTCCGTTTTGTATTCACTC 60.121 47.826 0.00 0.00 0.00 3.51
345 346 3.120786 CGTGTCCGTTTTGTATTCACTCC 60.121 47.826 0.00 0.00 0.00 3.85
346 347 3.061322 TGTCCGTTTTGTATTCACTCCG 58.939 45.455 0.00 0.00 0.00 4.63
347 348 3.062042 GTCCGTTTTGTATTCACTCCGT 58.938 45.455 0.00 0.00 0.00 4.69
348 349 4.236935 GTCCGTTTTGTATTCACTCCGTA 58.763 43.478 0.00 0.00 0.00 4.02
349 350 4.866486 GTCCGTTTTGTATTCACTCCGTAT 59.134 41.667 0.00 0.00 0.00 3.06
350 351 5.005107 GTCCGTTTTGTATTCACTCCGTATC 59.995 44.000 0.00 0.00 0.00 2.24
351 352 4.269363 CCGTTTTGTATTCACTCCGTATCC 59.731 45.833 0.00 0.00 0.00 2.59
352 353 4.027132 CGTTTTGTATTCACTCCGTATCCG 60.027 45.833 0.00 0.00 0.00 4.18
353 354 4.724074 TTTGTATTCACTCCGTATCCGT 57.276 40.909 0.00 0.00 0.00 4.69
354 355 4.724074 TTGTATTCACTCCGTATCCGTT 57.276 40.909 0.00 0.00 0.00 4.44
355 356 4.724074 TGTATTCACTCCGTATCCGTTT 57.276 40.909 0.00 0.00 0.00 3.60
356 357 5.075858 TGTATTCACTCCGTATCCGTTTT 57.924 39.130 0.00 0.00 0.00 2.43
357 358 5.104374 TGTATTCACTCCGTATCCGTTTTC 58.896 41.667 0.00 0.00 0.00 2.29
358 359 3.663995 TTCACTCCGTATCCGTTTTCA 57.336 42.857 0.00 0.00 0.00 2.69
359 360 3.226346 TCACTCCGTATCCGTTTTCAG 57.774 47.619 0.00 0.00 0.00 3.02
360 361 2.559668 TCACTCCGTATCCGTTTTCAGT 59.440 45.455 0.00 0.00 0.00 3.41
361 362 3.758023 TCACTCCGTATCCGTTTTCAGTA 59.242 43.478 0.00 0.00 0.00 2.74
362 363 4.103357 CACTCCGTATCCGTTTTCAGTAG 58.897 47.826 0.00 0.00 0.00 2.57
363 364 3.760684 ACTCCGTATCCGTTTTCAGTAGT 59.239 43.478 0.00 0.00 0.00 2.73
364 365 4.943705 ACTCCGTATCCGTTTTCAGTAGTA 59.056 41.667 0.00 0.00 0.00 1.82
365 366 5.591877 ACTCCGTATCCGTTTTCAGTAGTAT 59.408 40.000 0.00 0.00 0.00 2.12
366 367 6.064846 TCCGTATCCGTTTTCAGTAGTATC 57.935 41.667 0.00 0.00 0.00 2.24
367 368 5.824624 TCCGTATCCGTTTTCAGTAGTATCT 59.175 40.000 0.00 0.00 0.00 1.98
368 369 5.913514 CCGTATCCGTTTTCAGTAGTATCTG 59.086 44.000 0.00 0.00 36.85 2.90
369 370 6.459298 CCGTATCCGTTTTCAGTAGTATCTGT 60.459 42.308 0.00 0.00 36.85 3.41
370 371 6.971184 CGTATCCGTTTTCAGTAGTATCTGTT 59.029 38.462 0.00 0.00 36.85 3.16
371 372 7.487189 CGTATCCGTTTTCAGTAGTATCTGTTT 59.513 37.037 0.00 0.00 36.85 2.83
372 373 7.829378 ATCCGTTTTCAGTAGTATCTGTTTC 57.171 36.000 0.00 0.00 36.85 2.78
373 374 6.161381 TCCGTTTTCAGTAGTATCTGTTTCC 58.839 40.000 0.00 0.00 36.85 3.13
374 375 5.929992 CCGTTTTCAGTAGTATCTGTTTCCA 59.070 40.000 0.00 0.00 36.85 3.53
375 376 6.594159 CCGTTTTCAGTAGTATCTGTTTCCAT 59.406 38.462 0.00 0.00 36.85 3.41
376 377 7.762615 CCGTTTTCAGTAGTATCTGTTTCCATA 59.237 37.037 0.00 0.00 36.85 2.74
377 378 9.314321 CGTTTTCAGTAGTATCTGTTTCCATAT 57.686 33.333 0.00 0.00 36.85 1.78
390 391 8.421249 TCTGTTTCCATATTCATTTTCAAGGT 57.579 30.769 0.00 0.00 0.00 3.50
391 392 8.869109 TCTGTTTCCATATTCATTTTCAAGGTT 58.131 29.630 0.00 0.00 0.00 3.50
392 393 9.492973 CTGTTTCCATATTCATTTTCAAGGTTT 57.507 29.630 0.00 0.00 0.00 3.27
393 394 9.844257 TGTTTCCATATTCATTTTCAAGGTTTT 57.156 25.926 0.00 0.00 0.00 2.43
396 397 9.844257 TTCCATATTCATTTTCAAGGTTTTTGT 57.156 25.926 0.00 0.00 0.00 2.83
407 408 7.938563 TTCAAGGTTTTTGTATTCATTTCCG 57.061 32.000 0.00 0.00 0.00 4.30
408 409 7.045126 TCAAGGTTTTTGTATTCATTTCCGT 57.955 32.000 0.00 0.00 0.00 4.69
409 410 7.493367 TCAAGGTTTTTGTATTCATTTCCGTT 58.507 30.769 0.00 0.00 0.00 4.44
410 411 7.982354 TCAAGGTTTTTGTATTCATTTCCGTTT 59.018 29.630 0.00 0.00 0.00 3.60
411 412 7.940178 AGGTTTTTGTATTCATTTCCGTTTC 57.060 32.000 0.00 0.00 0.00 2.78
412 413 7.722363 AGGTTTTTGTATTCATTTCCGTTTCT 58.278 30.769 0.00 0.00 0.00 2.52
413 414 7.651704 AGGTTTTTGTATTCATTTCCGTTTCTG 59.348 33.333 0.00 0.00 0.00 3.02
414 415 7.280769 GTTTTTGTATTCATTTCCGTTTCTGC 58.719 34.615 0.00 0.00 0.00 4.26
415 416 5.697473 TTGTATTCATTTCCGTTTCTGCA 57.303 34.783 0.00 0.00 0.00 4.41
416 417 5.697473 TGTATTCATTTCCGTTTCTGCAA 57.303 34.783 0.00 0.00 0.00 4.08
417 418 6.078202 TGTATTCATTTCCGTTTCTGCAAA 57.922 33.333 0.00 0.00 0.00 3.68
418 419 6.507900 TGTATTCATTTCCGTTTCTGCAAAA 58.492 32.000 0.00 0.00 0.00 2.44
419 420 6.980978 TGTATTCATTTCCGTTTCTGCAAAAA 59.019 30.769 0.00 0.00 0.00 1.94
420 421 7.655328 TGTATTCATTTCCGTTTCTGCAAAAAT 59.345 29.630 0.00 0.00 0.00 1.82
421 422 5.903764 TCATTTCCGTTTCTGCAAAAATG 57.096 34.783 0.00 0.00 36.12 2.32
422 423 5.355596 TCATTTCCGTTTCTGCAAAAATGT 58.644 33.333 4.11 0.00 36.18 2.71
423 424 6.507900 TCATTTCCGTTTCTGCAAAAATGTA 58.492 32.000 4.11 0.00 36.18 2.29
424 425 7.151308 TCATTTCCGTTTCTGCAAAAATGTAT 58.849 30.769 4.11 0.00 36.18 2.29
425 426 6.761731 TTTCCGTTTCTGCAAAAATGTATG 57.238 33.333 4.11 0.00 0.00 2.39
426 427 5.697473 TCCGTTTCTGCAAAAATGTATGA 57.303 34.783 4.11 0.00 0.00 2.15
427 428 6.078202 TCCGTTTCTGCAAAAATGTATGAA 57.922 33.333 4.11 0.00 0.00 2.57
428 429 6.507900 TCCGTTTCTGCAAAAATGTATGAAA 58.492 32.000 4.11 0.00 0.00 2.69
429 430 6.980978 TCCGTTTCTGCAAAAATGTATGAAAA 59.019 30.769 4.11 0.00 0.00 2.29
430 431 7.043059 TCCGTTTCTGCAAAAATGTATGAAAAC 60.043 33.333 4.11 0.00 0.00 2.43
431 432 7.254252 CCGTTTCTGCAAAAATGTATGAAAACA 60.254 33.333 4.11 0.00 0.00 2.83
432 433 8.113062 CGTTTCTGCAAAAATGTATGAAAACAA 58.887 29.630 0.00 0.00 32.02 2.83
433 434 9.766277 GTTTCTGCAAAAATGTATGAAAACAAA 57.234 25.926 0.00 0.00 32.02 2.83
444 445 9.801873 AATGTATGAAAACAAATATGGTAGCAC 57.198 29.630 0.00 0.00 32.02 4.40
445 446 8.574251 TGTATGAAAACAAATATGGTAGCACT 57.426 30.769 0.00 0.00 0.00 4.40
446 447 9.674068 TGTATGAAAACAAATATGGTAGCACTA 57.326 29.630 0.00 0.00 0.00 2.74
448 449 8.807948 ATGAAAACAAATATGGTAGCACTAGT 57.192 30.769 0.00 0.00 0.00 2.57
449 450 8.630054 TGAAAACAAATATGGTAGCACTAGTT 57.370 30.769 0.00 0.00 0.00 2.24
450 451 8.726988 TGAAAACAAATATGGTAGCACTAGTTC 58.273 33.333 0.00 0.00 0.00 3.01
451 452 7.625828 AAACAAATATGGTAGCACTAGTTCC 57.374 36.000 0.00 0.00 0.00 3.62
452 453 5.357257 ACAAATATGGTAGCACTAGTTCCG 58.643 41.667 0.00 0.00 0.00 4.30
453 454 5.105064 ACAAATATGGTAGCACTAGTTCCGT 60.105 40.000 0.00 0.00 0.00 4.69
454 455 5.609533 AATATGGTAGCACTAGTTCCGTT 57.390 39.130 0.00 0.00 0.00 4.44
455 456 3.521947 ATGGTAGCACTAGTTCCGTTC 57.478 47.619 0.00 0.00 0.00 3.95
456 457 1.200716 TGGTAGCACTAGTTCCGTTCG 59.799 52.381 0.00 0.00 0.00 3.95
457 458 1.200948 GGTAGCACTAGTTCCGTTCGT 59.799 52.381 0.00 0.00 0.00 3.85
458 459 2.352127 GGTAGCACTAGTTCCGTTCGTT 60.352 50.000 0.00 0.00 0.00 3.85
459 460 2.521105 AGCACTAGTTCCGTTCGTTT 57.479 45.000 0.00 0.00 0.00 3.60
460 461 2.401351 AGCACTAGTTCCGTTCGTTTC 58.599 47.619 0.00 0.00 0.00 2.78
461 462 1.458445 GCACTAGTTCCGTTCGTTTCC 59.542 52.381 0.00 0.00 0.00 3.13
462 463 2.064014 CACTAGTTCCGTTCGTTTCCC 58.936 52.381 0.00 0.00 0.00 3.97
463 464 1.001293 ACTAGTTCCGTTCGTTTCCCC 59.999 52.381 0.00 0.00 0.00 4.81
464 465 1.274447 CTAGTTCCGTTCGTTTCCCCT 59.726 52.381 0.00 0.00 0.00 4.79
465 466 0.034476 AGTTCCGTTCGTTTCCCCTC 59.966 55.000 0.00 0.00 0.00 4.30
466 467 0.952497 GTTCCGTTCGTTTCCCCTCC 60.952 60.000 0.00 0.00 0.00 4.30
467 468 2.433664 CCGTTCGTTTCCCCTCCG 60.434 66.667 0.00 0.00 0.00 4.63
468 469 2.341176 CGTTCGTTTCCCCTCCGT 59.659 61.111 0.00 0.00 0.00 4.69
469 470 1.301165 CGTTCGTTTCCCCTCCGTT 60.301 57.895 0.00 0.00 0.00 4.44
470 471 0.881600 CGTTCGTTTCCCCTCCGTTT 60.882 55.000 0.00 0.00 0.00 3.60
471 472 1.311859 GTTCGTTTCCCCTCCGTTTT 58.688 50.000 0.00 0.00 0.00 2.43
472 473 1.265095 GTTCGTTTCCCCTCCGTTTTC 59.735 52.381 0.00 0.00 0.00 2.29
473 474 0.469070 TCGTTTCCCCTCCGTTTTCA 59.531 50.000 0.00 0.00 0.00 2.69
474 475 1.072648 TCGTTTCCCCTCCGTTTTCAT 59.927 47.619 0.00 0.00 0.00 2.57
475 476 1.467342 CGTTTCCCCTCCGTTTTCATC 59.533 52.381 0.00 0.00 0.00 2.92
476 477 1.816835 GTTTCCCCTCCGTTTTCATCC 59.183 52.381 0.00 0.00 0.00 3.51
477 478 1.368374 TTCCCCTCCGTTTTCATCCT 58.632 50.000 0.00 0.00 0.00 3.24
480 481 3.931317 TCCCCTCCGTTTTCATCCTATA 58.069 45.455 0.00 0.00 0.00 1.31
567 570 4.803908 GCCAAGCGGGAAGAGGGG 62.804 72.222 1.23 0.00 40.01 4.79
572 575 1.853250 AAGCGGGAAGAGGGGAAAGG 61.853 60.000 0.00 0.00 0.00 3.11
724 790 0.248012 TGCTCGTGATTTTCCGGCTA 59.752 50.000 0.00 0.00 0.00 3.93
974 1046 3.479269 CGCCTCGAACGTTCCTGC 61.479 66.667 22.07 19.08 0.00 4.85
976 1048 2.668280 GCCTCGAACGTTCCTGCAC 61.668 63.158 22.07 5.10 0.00 4.57
985 1057 1.361668 CGTTCCTGCACCGATTCTGG 61.362 60.000 0.00 0.00 0.00 3.86
986 1058 0.321653 GTTCCTGCACCGATTCTGGT 60.322 55.000 0.00 0.00 45.21 4.00
987 1059 1.066430 GTTCCTGCACCGATTCTGGTA 60.066 52.381 0.86 0.00 41.38 3.25
988 1060 1.496060 TCCTGCACCGATTCTGGTAT 58.504 50.000 0.86 0.00 41.38 2.73
989 1061 1.412710 TCCTGCACCGATTCTGGTATC 59.587 52.381 0.86 0.00 41.38 2.24
990 1062 1.414181 CCTGCACCGATTCTGGTATCT 59.586 52.381 0.86 0.00 41.38 1.98
991 1063 2.158900 CCTGCACCGATTCTGGTATCTT 60.159 50.000 0.86 0.00 41.38 2.40
1051 1123 0.315251 CCTCAGTCAGTCAACAGCGA 59.685 55.000 0.00 0.00 0.00 4.93
1072 1144 4.201724 CGAACATAGCTACAGTTTGCTTCC 60.202 45.833 13.00 1.64 40.35 3.46
1084 1156 5.178061 CAGTTTGCTTCCTTCTTTGGTTTT 58.822 37.500 0.00 0.00 0.00 2.43
1086 1158 3.708563 TGCTTCCTTCTTTGGTTTTCG 57.291 42.857 0.00 0.00 0.00 3.46
1091 1163 3.071479 TCCTTCTTTGGTTTTCGATCGG 58.929 45.455 16.41 0.00 0.00 4.18
1092 1164 2.812011 CCTTCTTTGGTTTTCGATCGGT 59.188 45.455 16.41 0.00 0.00 4.69
1093 1165 3.120304 CCTTCTTTGGTTTTCGATCGGTC 60.120 47.826 16.41 3.44 0.00 4.79
1094 1166 3.396260 TCTTTGGTTTTCGATCGGTCT 57.604 42.857 16.41 0.00 0.00 3.85
1095 1167 4.524316 TCTTTGGTTTTCGATCGGTCTA 57.476 40.909 16.41 0.00 0.00 2.59
1096 1168 4.240096 TCTTTGGTTTTCGATCGGTCTAC 58.760 43.478 16.41 8.45 0.00 2.59
1097 1169 3.947910 TTGGTTTTCGATCGGTCTACT 57.052 42.857 16.41 0.00 0.00 2.57
1098 1170 3.226346 TGGTTTTCGATCGGTCTACTG 57.774 47.619 16.41 0.00 0.00 2.74
1099 1171 1.925185 GGTTTTCGATCGGTCTACTGC 59.075 52.381 16.41 0.00 0.00 4.40
1100 1172 1.582502 GTTTTCGATCGGTCTACTGCG 59.417 52.381 16.41 0.00 0.00 5.18
1101 1173 0.524816 TTTCGATCGGTCTACTGCGC 60.525 55.000 16.41 0.00 0.00 6.09
1102 1174 2.642249 TTCGATCGGTCTACTGCGCG 62.642 60.000 16.41 0.00 0.00 6.86
1103 1175 3.025176 GATCGGTCTACTGCGCGC 61.025 66.667 27.26 27.26 0.00 6.86
1104 1176 4.907034 ATCGGTCTACTGCGCGCG 62.907 66.667 28.44 28.44 0.00 6.86
1120 1192 4.368808 CGCGCGTTTGTGTGGAGG 62.369 66.667 24.19 0.00 32.50 4.30
1121 1193 2.970324 GCGCGTTTGTGTGGAGGA 60.970 61.111 8.43 0.00 0.00 3.71
1122 1194 2.954753 GCGCGTTTGTGTGGAGGAG 61.955 63.158 8.43 0.00 0.00 3.69
1123 1195 1.594293 CGCGTTTGTGTGGAGGAGT 60.594 57.895 0.00 0.00 0.00 3.85
1124 1196 1.157870 CGCGTTTGTGTGGAGGAGTT 61.158 55.000 0.00 0.00 0.00 3.01
1125 1197 1.021968 GCGTTTGTGTGGAGGAGTTT 58.978 50.000 0.00 0.00 0.00 2.66
1126 1198 1.404035 GCGTTTGTGTGGAGGAGTTTT 59.596 47.619 0.00 0.00 0.00 2.43
1258 1330 3.119709 CTCGCTCCACCTCTCGCTC 62.120 68.421 0.00 0.00 0.00 5.03
2018 2090 1.658686 GGCCTCGACATCGTCAGAGT 61.659 60.000 0.00 0.00 40.80 3.24
2109 2181 2.259818 CGAGACGCTGCTCAAGGT 59.740 61.111 0.00 0.00 34.56 3.50
2218 2290 2.202878 ATACGCGCGGCAGTGAAT 60.203 55.556 35.22 12.98 0.00 2.57
2237 2309 0.975040 TGAGAAGCTGAGGGAGAGGC 60.975 60.000 0.00 0.00 0.00 4.70
2474 2546 1.300931 GTGCTCGTTGGTCTCAGCA 60.301 57.895 0.00 0.00 39.58 4.41
2529 2601 0.458716 GCTGACTGGAACGAGTAGCC 60.459 60.000 0.00 0.00 0.00 3.93
2572 2644 4.348656 GCAGCTCATCATGTGTAAATGTG 58.651 43.478 0.00 0.00 0.00 3.21
2577 2649 7.226128 CAGCTCATCATGTGTAAATGTGTAGAT 59.774 37.037 0.00 0.00 0.00 1.98
2578 2650 8.424133 AGCTCATCATGTGTAAATGTGTAGATA 58.576 33.333 0.00 0.00 0.00 1.98
2579 2651 8.491152 GCTCATCATGTGTAAATGTGTAGATAC 58.509 37.037 0.00 0.00 0.00 2.24
2580 2652 9.755804 CTCATCATGTGTAAATGTGTAGATACT 57.244 33.333 0.00 0.00 0.00 2.12
2581 2653 9.533253 TCATCATGTGTAAATGTGTAGATACTG 57.467 33.333 0.00 0.00 0.00 2.74
2598 2670 9.050601 GTAGATACTGTATACGTGTAGGAAAGT 57.949 37.037 0.00 0.52 0.00 2.66
2612 2684 8.540492 CGTGTAGGAAAGTCATTTGTATACATC 58.460 37.037 6.36 0.00 0.00 3.06
2616 2688 7.402054 AGGAAAGTCATTTGTATACATCCACA 58.598 34.615 16.40 0.00 0.00 4.17
2629 2701 7.662669 TGTATACATCCACAAGATCATTGATGG 59.337 37.037 3.32 0.18 35.16 3.51
2631 2703 3.369242 TCCACAAGATCATTGATGGCA 57.631 42.857 3.32 0.00 0.00 4.92
2632 2704 3.018856 TCCACAAGATCATTGATGGCAC 58.981 45.455 3.32 0.00 0.00 5.01
2633 2705 2.223409 CCACAAGATCATTGATGGCACG 60.223 50.000 3.32 0.00 0.00 5.34
2634 2706 2.421073 CACAAGATCATTGATGGCACGT 59.579 45.455 3.32 0.00 0.00 4.49
2635 2707 2.421073 ACAAGATCATTGATGGCACGTG 59.579 45.455 12.28 12.28 0.00 4.49
2636 2708 2.408271 AGATCATTGATGGCACGTGT 57.592 45.000 18.38 0.00 0.00 4.49
2637 2709 2.715046 AGATCATTGATGGCACGTGTT 58.285 42.857 18.38 2.18 0.00 3.32
2638 2710 2.421073 AGATCATTGATGGCACGTGTTG 59.579 45.455 18.38 4.32 0.00 3.33
2639 2711 1.603456 TCATTGATGGCACGTGTTGT 58.397 45.000 18.38 2.73 0.00 3.32
2640 2712 1.952990 TCATTGATGGCACGTGTTGTT 59.047 42.857 18.38 0.00 0.00 2.83
2641 2713 2.052891 CATTGATGGCACGTGTTGTTG 58.947 47.619 18.38 2.80 0.00 3.33
2642 2714 1.098869 TTGATGGCACGTGTTGTTGT 58.901 45.000 18.38 0.00 0.00 3.32
2643 2715 0.380024 TGATGGCACGTGTTGTTGTG 59.620 50.000 18.38 0.00 39.10 3.33
2644 2716 0.380378 GATGGCACGTGTTGTTGTGT 59.620 50.000 18.38 0.00 38.36 3.72
2645 2717 0.380378 ATGGCACGTGTTGTTGTGTC 59.620 50.000 18.38 0.00 41.00 3.67
2646 2718 1.797441 GGCACGTGTTGTTGTGTCA 59.203 52.632 18.38 0.00 40.35 3.58
2647 2719 0.169230 GGCACGTGTTGTTGTGTCAA 59.831 50.000 18.38 0.00 40.35 3.18
2648 2720 1.202245 GGCACGTGTTGTTGTGTCAAT 60.202 47.619 18.38 0.00 40.35 2.57
2649 2721 2.032302 GGCACGTGTTGTTGTGTCAATA 59.968 45.455 18.38 0.00 40.35 1.90
2667 2741 9.781834 GTGTCAATATATTTTTCCAACGATGAA 57.218 29.630 0.00 0.00 0.00 2.57
2712 2786 7.370383 AGTCATAAAACATAGTGGCACAAAAG 58.630 34.615 21.41 9.00 44.16 2.27
2743 2817 7.242914 AGTTACATTTGTATAAAGCGCCTAC 57.757 36.000 2.29 1.70 0.00 3.18
2779 2853 9.187455 GACTATAAAAGATTCTAGTAGTGCAGC 57.813 37.037 0.00 0.00 30.94 5.25
2795 2869 2.190578 GCGGTGGGAGAGGATTGG 59.809 66.667 0.00 0.00 0.00 3.16
2802 2878 1.354368 TGGGAGAGGATTGGGTTTGTC 59.646 52.381 0.00 0.00 0.00 3.18
2818 2894 5.352016 GGGTTTGTCAAACTTGGGTTTTAAC 59.648 40.000 24.02 6.43 42.96 2.01
2828 2904 7.857734 AACTTGGGTTTTAACTTGAATTTGG 57.142 32.000 0.00 0.00 30.55 3.28
2834 2910 8.929487 TGGGTTTTAACTTGAATTTGGTTCTAT 58.071 29.630 0.00 0.00 37.72 1.98
2850 2926 7.482169 TGGTTCTATCTTTATGTCTCACACT 57.518 36.000 0.00 0.00 0.00 3.55
2866 2942 3.330405 TCACACTTGAGGGGATTGAATCA 59.670 43.478 7.56 0.00 0.00 2.57
2880 2956 5.884792 GGATTGAATCAGGAGTTTGAGACAT 59.115 40.000 7.56 0.00 0.00 3.06
2889 2965 5.293814 CAGGAGTTTGAGACATTGCTAGATG 59.706 44.000 0.00 0.00 0.00 2.90
2901 2977 6.951971 ACATTGCTAGATGTTCCTTAGAAGT 58.048 36.000 0.00 0.00 36.92 3.01
2904 2980 5.178797 TGCTAGATGTTCCTTAGAAGTTGC 58.821 41.667 0.00 0.00 30.91 4.17
2908 2984 5.809001 AGATGTTCCTTAGAAGTTGCATCA 58.191 37.500 14.15 0.00 35.34 3.07
2915 2991 7.149569 TCCTTAGAAGTTGCATCATTGAAAG 57.850 36.000 0.00 0.00 0.00 2.62
2916 2992 5.803967 CCTTAGAAGTTGCATCATTGAAAGC 59.196 40.000 7.33 7.33 0.00 3.51
2917 2993 4.859304 AGAAGTTGCATCATTGAAAGCA 57.141 36.364 11.67 11.67 34.79 3.91
2919 2995 4.038282 AGAAGTTGCATCATTGAAAGCACA 59.962 37.500 14.41 6.14 36.62 4.57
2922 2998 4.748102 AGTTGCATCATTGAAAGCACAAAG 59.252 37.500 14.41 0.00 36.62 2.77
2939 3015 5.315982 CACAAAGCGTACACATGATAACAG 58.684 41.667 0.00 0.00 0.00 3.16
2940 3016 4.142902 ACAAAGCGTACACATGATAACAGC 60.143 41.667 0.00 0.00 0.00 4.40
2972 3048 5.689068 GCATTTGCTATAACTTTGGATCAGC 59.311 40.000 0.00 0.00 38.21 4.26
2979 3055 0.909610 ACTTTGGATCAGCCCGGAGA 60.910 55.000 0.73 0.00 34.97 3.71
3069 3145 3.214250 CTGGCCGATAGCGAGGACC 62.214 68.421 0.00 0.00 43.17 4.46
3072 3148 2.782222 GCCGATAGCGAGGACCACA 61.782 63.158 0.00 0.00 40.82 4.17
3073 3149 1.360551 CCGATAGCGAGGACCACAG 59.639 63.158 0.00 0.00 40.82 3.66
3074 3150 1.299468 CGATAGCGAGGACCACAGC 60.299 63.158 0.00 0.00 40.82 4.40
3149 3225 5.586243 CGATTGGGTCTGTGAATTACTCAAT 59.414 40.000 3.55 3.55 35.22 2.57
3154 3230 5.175859 GGTCTGTGAATTACTCAATTCCGA 58.824 41.667 7.45 0.75 46.42 4.55
3224 3439 2.123982 GATCCAGCAAGGGCAGGG 60.124 66.667 0.00 0.00 46.06 4.45
3231 3446 2.436646 CAAGGGCAGGGCTACACG 60.437 66.667 0.00 0.00 0.00 4.49
3277 3492 0.248134 CGAGTCGTTCATCGGAGGAC 60.248 60.000 3.82 0.00 40.32 3.85
3373 3616 1.283321 GTCAGGAAGAAGAAGGGGCAT 59.717 52.381 0.00 0.00 0.00 4.40
3378 3621 1.208165 AAGAAGAAGGGGCATCGGGT 61.208 55.000 0.00 0.00 0.00 5.28
3380 3623 2.198304 GAAGAAGGGGCATCGGGTGT 62.198 60.000 0.00 0.00 0.00 4.16
3479 3722 3.920412 GGCTCGTTTGAAAAGCTTATTGG 59.080 43.478 0.00 0.00 36.29 3.16
3511 3754 1.562672 TTCTCTTAGCAGGTGGGCCC 61.563 60.000 17.59 17.59 34.57 5.80
3513 3756 2.044946 CTTAGCAGGTGGGCCCAC 60.045 66.667 42.18 42.18 45.49 4.61
3578 3821 1.006102 GGATCAGACGGGTATGCGG 60.006 63.158 0.00 0.00 0.00 5.69
3580 3823 2.088674 GATCAGACGGGTATGCGGCT 62.089 60.000 0.00 0.00 0.00 5.52
3581 3824 2.088674 ATCAGACGGGTATGCGGCTC 62.089 60.000 0.00 0.00 0.00 4.70
3628 3871 3.601211 CGTAGTACGTTTCAGTTCCTTCG 59.399 47.826 14.62 0.00 36.74 3.79
3629 3872 3.022607 AGTACGTTTCAGTTCCTTCGG 57.977 47.619 0.00 0.00 0.00 4.30
3655 3898 2.579207 ATCCAGAACATCCACGTACG 57.421 50.000 15.01 15.01 0.00 3.67
3674 3917 3.047718 TTGGCTAGCGACGAGGACG 62.048 63.158 9.00 0.00 45.75 4.79
3689 3932 1.291272 GACGCAACTAGGGTTCGGT 59.709 57.895 0.00 0.00 44.33 4.69
3690 3933 1.005394 ACGCAACTAGGGTTCGGTG 60.005 57.895 0.00 0.00 41.09 4.94
3696 3939 2.686106 TAGGGTTCGGTGGAGGCC 60.686 66.667 0.00 0.00 0.00 5.19
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.678915 TTCACGAAAACGGAAAGTTCC 57.321 42.857 0.00 0.00 43.37 3.62
2 3 5.793457 CCATATTCACGAAAACGGAAAGTTC 59.207 40.000 0.00 0.00 43.37 3.01
3 4 5.470777 TCCATATTCACGAAAACGGAAAGTT 59.529 36.000 0.00 0.00 46.76 2.66
4 5 4.998672 TCCATATTCACGAAAACGGAAAGT 59.001 37.500 0.00 0.00 0.00 2.66
5 6 5.539582 TCCATATTCACGAAAACGGAAAG 57.460 39.130 0.00 0.00 0.00 2.62
6 7 5.943706 TTCCATATTCACGAAAACGGAAA 57.056 34.783 0.00 0.00 0.00 3.13
7 8 6.503589 AATTCCATATTCACGAAAACGGAA 57.496 33.333 8.65 8.65 35.86 4.30
8 9 6.503589 AAATTCCATATTCACGAAAACGGA 57.496 33.333 0.00 0.00 0.00 4.69
9 10 6.021782 CGAAAATTCCATATTCACGAAAACGG 60.022 38.462 0.00 0.00 0.00 4.44
10 11 6.521821 ACGAAAATTCCATATTCACGAAAACG 59.478 34.615 0.00 0.00 0.00 3.60
11 12 7.790861 ACGAAAATTCCATATTCACGAAAAC 57.209 32.000 0.00 0.00 0.00 2.43
12 13 8.804688 AAACGAAAATTCCATATTCACGAAAA 57.195 26.923 0.00 0.00 0.00 2.29
13 14 8.804688 AAAACGAAAATTCCATATTCACGAAA 57.195 26.923 0.00 0.00 0.00 3.46
14 15 8.804688 AAAAACGAAAATTCCATATTCACGAA 57.195 26.923 0.00 0.00 0.00 3.85
15 16 9.332301 GTAAAAACGAAAATTCCATATTCACGA 57.668 29.630 0.00 0.00 0.00 4.35
16 17 9.337091 AGTAAAAACGAAAATTCCATATTCACG 57.663 29.630 0.00 0.00 0.00 4.35
30 31 9.826574 AGCCATATGTCTATAGTAAAAACGAAA 57.173 29.630 1.24 0.00 0.00 3.46
32 33 9.903682 GTAGCCATATGTCTATAGTAAAAACGA 57.096 33.333 1.24 0.00 0.00 3.85
33 34 9.909644 AGTAGCCATATGTCTATAGTAAAAACG 57.090 33.333 1.24 0.00 0.00 3.60
47 48 9.860650 TGGTTGAATTATAAAGTAGCCATATGT 57.139 29.630 1.24 0.00 0.00 2.29
51 52 9.914834 TTAGTGGTTGAATTATAAAGTAGCCAT 57.085 29.630 0.00 0.00 0.00 4.40
52 53 9.742144 TTTAGTGGTTGAATTATAAAGTAGCCA 57.258 29.630 0.00 0.00 0.00 4.75
53 54 9.999009 GTTTAGTGGTTGAATTATAAAGTAGCC 57.001 33.333 0.00 0.00 0.00 3.93
60 61 9.953697 GTGTGTTGTTTAGTGGTTGAATTATAA 57.046 29.630 0.00 0.00 0.00 0.98
61 62 9.121658 TGTGTGTTGTTTAGTGGTTGAATTATA 57.878 29.630 0.00 0.00 0.00 0.98
62 63 8.001881 TGTGTGTTGTTTAGTGGTTGAATTAT 57.998 30.769 0.00 0.00 0.00 1.28
63 64 7.392494 TGTGTGTTGTTTAGTGGTTGAATTA 57.608 32.000 0.00 0.00 0.00 1.40
64 65 6.274157 TGTGTGTTGTTTAGTGGTTGAATT 57.726 33.333 0.00 0.00 0.00 2.17
65 66 5.906113 TGTGTGTTGTTTAGTGGTTGAAT 57.094 34.783 0.00 0.00 0.00 2.57
66 67 5.241949 ACTTGTGTGTTGTTTAGTGGTTGAA 59.758 36.000 0.00 0.00 0.00 2.69
67 68 4.762765 ACTTGTGTGTTGTTTAGTGGTTGA 59.237 37.500 0.00 0.00 0.00 3.18
68 69 5.054390 ACTTGTGTGTTGTTTAGTGGTTG 57.946 39.130 0.00 0.00 0.00 3.77
69 70 7.553402 TGTATACTTGTGTGTTGTTTAGTGGTT 59.447 33.333 4.17 0.00 0.00 3.67
70 71 7.049133 TGTATACTTGTGTGTTGTTTAGTGGT 58.951 34.615 4.17 0.00 0.00 4.16
71 72 7.485418 TGTATACTTGTGTGTTGTTTAGTGG 57.515 36.000 4.17 0.00 0.00 4.00
72 73 9.381027 CATTGTATACTTGTGTGTTGTTTAGTG 57.619 33.333 4.17 0.00 0.00 2.74
73 74 9.332502 TCATTGTATACTTGTGTGTTGTTTAGT 57.667 29.630 4.17 0.00 0.00 2.24
74 75 9.811655 CTCATTGTATACTTGTGTGTTGTTTAG 57.188 33.333 4.17 0.00 0.00 1.85
75 76 9.332502 ACTCATTGTATACTTGTGTGTTGTTTA 57.667 29.630 4.17 0.00 0.00 2.01
76 77 8.220755 ACTCATTGTATACTTGTGTGTTGTTT 57.779 30.769 4.17 0.00 0.00 2.83
77 78 7.801716 ACTCATTGTATACTTGTGTGTTGTT 57.198 32.000 4.17 0.00 0.00 2.83
78 79 8.364894 TCTACTCATTGTATACTTGTGTGTTGT 58.635 33.333 17.09 9.71 0.00 3.32
79 80 8.757164 TCTACTCATTGTATACTTGTGTGTTG 57.243 34.615 17.09 13.44 0.00 3.33
80 81 9.944376 ATTCTACTCATTGTATACTTGTGTGTT 57.056 29.630 17.09 5.54 0.00 3.32
81 82 9.371136 CATTCTACTCATTGTATACTTGTGTGT 57.629 33.333 17.09 14.49 0.00 3.72
82 83 9.586435 TCATTCTACTCATTGTATACTTGTGTG 57.414 33.333 17.09 11.04 0.00 3.82
94 95 9.674824 GGCTAAAATGATTCATTCTACTCATTG 57.325 33.333 12.15 0.00 38.12 2.82
95 96 8.854117 GGGCTAAAATGATTCATTCTACTCATT 58.146 33.333 12.15 4.33 39.39 2.57
96 97 8.000709 TGGGCTAAAATGATTCATTCTACTCAT 58.999 33.333 12.15 0.00 32.43 2.90
97 98 7.345691 TGGGCTAAAATGATTCATTCTACTCA 58.654 34.615 12.15 6.31 32.43 3.41
98 99 7.807977 TGGGCTAAAATGATTCATTCTACTC 57.192 36.000 12.15 4.03 32.43 2.59
99 100 7.615365 TGTTGGGCTAAAATGATTCATTCTACT 59.385 33.333 12.15 1.48 32.43 2.57
100 101 7.771183 TGTTGGGCTAAAATGATTCATTCTAC 58.229 34.615 12.15 6.72 32.43 2.59
101 102 7.953005 TGTTGGGCTAAAATGATTCATTCTA 57.047 32.000 12.15 2.52 32.43 2.10
102 103 6.855763 TGTTGGGCTAAAATGATTCATTCT 57.144 33.333 12.15 1.35 32.43 2.40
103 104 8.496707 AAATGTTGGGCTAAAATGATTCATTC 57.503 30.769 12.15 0.42 32.43 2.67
104 105 9.382275 GTAAATGTTGGGCTAAAATGATTCATT 57.618 29.630 6.06 6.06 35.39 2.57
105 106 8.761689 AGTAAATGTTGGGCTAAAATGATTCAT 58.238 29.630 0.00 0.00 0.00 2.57
106 107 8.133024 AGTAAATGTTGGGCTAAAATGATTCA 57.867 30.769 0.00 0.00 0.00 2.57
107 108 9.516314 GTAGTAAATGTTGGGCTAAAATGATTC 57.484 33.333 0.00 0.00 0.00 2.52
108 109 9.255029 AGTAGTAAATGTTGGGCTAAAATGATT 57.745 29.630 0.00 0.00 0.00 2.57
109 110 8.823220 AGTAGTAAATGTTGGGCTAAAATGAT 57.177 30.769 0.00 0.00 0.00 2.45
110 111 9.169592 GTAGTAGTAAATGTTGGGCTAAAATGA 57.830 33.333 0.00 0.00 0.00 2.57
111 112 8.952278 TGTAGTAGTAAATGTTGGGCTAAAATG 58.048 33.333 0.00 0.00 0.00 2.32
112 113 8.953313 GTGTAGTAGTAAATGTTGGGCTAAAAT 58.047 33.333 0.00 0.00 0.00 1.82
113 114 7.937942 TGTGTAGTAGTAAATGTTGGGCTAAAA 59.062 33.333 0.00 0.00 0.00 1.52
114 115 7.451732 TGTGTAGTAGTAAATGTTGGGCTAAA 58.548 34.615 0.00 0.00 0.00 1.85
115 116 7.006865 TGTGTAGTAGTAAATGTTGGGCTAA 57.993 36.000 0.00 0.00 0.00 3.09
116 117 6.608539 TGTGTAGTAGTAAATGTTGGGCTA 57.391 37.500 0.00 0.00 0.00 3.93
117 118 5.492855 TGTGTAGTAGTAAATGTTGGGCT 57.507 39.130 0.00 0.00 0.00 5.19
118 119 5.646360 ACATGTGTAGTAGTAAATGTTGGGC 59.354 40.000 0.00 0.00 0.00 5.36
119 120 8.038944 AGTACATGTGTAGTAGTAAATGTTGGG 58.961 37.037 9.11 0.00 32.75 4.12
120 121 8.997621 AGTACATGTGTAGTAGTAAATGTTGG 57.002 34.615 9.11 0.00 32.75 3.77
121 122 9.634163 TGAGTACATGTGTAGTAGTAAATGTTG 57.366 33.333 9.11 0.00 34.54 3.33
122 123 9.856488 CTGAGTACATGTGTAGTAGTAAATGTT 57.144 33.333 9.11 0.00 34.54 2.71
123 124 7.974501 GCTGAGTACATGTGTAGTAGTAAATGT 59.025 37.037 9.11 6.90 34.54 2.71
124 125 8.191446 AGCTGAGTACATGTGTAGTAGTAAATG 58.809 37.037 9.11 0.00 34.54 2.32
125 126 8.294954 AGCTGAGTACATGTGTAGTAGTAAAT 57.705 34.615 9.11 0.00 34.54 1.40
126 127 7.698506 AGCTGAGTACATGTGTAGTAGTAAA 57.301 36.000 9.11 0.00 34.54 2.01
127 128 7.392393 TCAAGCTGAGTACATGTGTAGTAGTAA 59.608 37.037 9.11 0.00 34.54 2.24
128 129 6.882678 TCAAGCTGAGTACATGTGTAGTAGTA 59.117 38.462 9.11 0.00 34.54 1.82
129 130 5.710567 TCAAGCTGAGTACATGTGTAGTAGT 59.289 40.000 9.11 0.00 34.54 2.73
130 131 6.030849 GTCAAGCTGAGTACATGTGTAGTAG 58.969 44.000 9.11 1.81 34.54 2.57
131 132 5.105877 GGTCAAGCTGAGTACATGTGTAGTA 60.106 44.000 9.11 0.00 34.54 1.82
132 133 4.322049 GGTCAAGCTGAGTACATGTGTAGT 60.322 45.833 9.11 0.28 36.91 2.73
133 134 4.177026 GGTCAAGCTGAGTACATGTGTAG 58.823 47.826 9.11 2.53 0.00 2.74
134 135 3.056107 GGGTCAAGCTGAGTACATGTGTA 60.056 47.826 9.11 0.00 0.00 2.90
135 136 2.289694 GGGTCAAGCTGAGTACATGTGT 60.290 50.000 9.11 0.00 0.00 3.72
136 137 2.027745 AGGGTCAAGCTGAGTACATGTG 60.028 50.000 9.11 0.00 0.00 3.21
137 138 2.260822 AGGGTCAAGCTGAGTACATGT 58.739 47.619 2.69 2.69 0.00 3.21
138 139 4.679373 ATAGGGTCAAGCTGAGTACATG 57.321 45.455 0.00 0.00 0.00 3.21
139 140 4.278669 CGTATAGGGTCAAGCTGAGTACAT 59.721 45.833 0.00 0.00 0.00 2.29
140 141 3.630769 CGTATAGGGTCAAGCTGAGTACA 59.369 47.826 0.00 0.00 0.00 2.90
141 142 3.631227 ACGTATAGGGTCAAGCTGAGTAC 59.369 47.826 0.00 0.00 0.00 2.73
142 143 3.894759 ACGTATAGGGTCAAGCTGAGTA 58.105 45.455 0.00 0.00 0.00 2.59
143 144 2.736347 ACGTATAGGGTCAAGCTGAGT 58.264 47.619 0.00 0.00 0.00 3.41
144 145 4.913335 TTACGTATAGGGTCAAGCTGAG 57.087 45.455 0.00 0.00 0.00 3.35
145 146 5.128171 ACAATTACGTATAGGGTCAAGCTGA 59.872 40.000 0.00 0.00 0.00 4.26
146 147 5.357257 ACAATTACGTATAGGGTCAAGCTG 58.643 41.667 0.00 0.00 0.00 4.24
147 148 5.452917 GGACAATTACGTATAGGGTCAAGCT 60.453 44.000 14.81 0.00 0.00 3.74
148 149 4.748600 GGACAATTACGTATAGGGTCAAGC 59.251 45.833 14.81 0.00 0.00 4.01
149 150 5.909477 TGGACAATTACGTATAGGGTCAAG 58.091 41.667 14.81 0.00 0.00 3.02
150 151 5.422970 ACTGGACAATTACGTATAGGGTCAA 59.577 40.000 14.81 6.74 0.00 3.18
151 152 4.957954 ACTGGACAATTACGTATAGGGTCA 59.042 41.667 14.81 3.88 0.00 4.02
152 153 5.526506 ACTGGACAATTACGTATAGGGTC 57.473 43.478 0.00 2.59 0.00 4.46
153 154 6.131961 AGTACTGGACAATTACGTATAGGGT 58.868 40.000 0.00 0.00 0.00 4.34
154 155 6.645790 AGTACTGGACAATTACGTATAGGG 57.354 41.667 0.00 0.00 0.00 3.53
155 156 8.388484 AGTAGTACTGGACAATTACGTATAGG 57.612 38.462 5.39 0.00 0.00 2.57
157 158 9.830975 TGTAGTAGTACTGGACAATTACGTATA 57.169 33.333 13.29 0.00 0.00 1.47
158 159 8.737168 TGTAGTAGTACTGGACAATTACGTAT 57.263 34.615 13.29 0.00 0.00 3.06
159 160 8.560355 TTGTAGTAGTACTGGACAATTACGTA 57.440 34.615 13.29 0.00 25.76 3.57
160 161 7.452880 TTGTAGTAGTACTGGACAATTACGT 57.547 36.000 13.29 0.00 25.76 3.57
161 162 9.443283 GTATTGTAGTAGTACTGGACAATTACG 57.557 37.037 25.66 0.00 38.03 3.18
165 166 8.834465 CGTAGTATTGTAGTAGTACTGGACAAT 58.166 37.037 24.61 24.61 39.43 2.71
166 167 7.201644 GCGTAGTATTGTAGTAGTACTGGACAA 60.202 40.741 17.06 17.06 32.98 3.18
167 168 6.258727 GCGTAGTATTGTAGTAGTACTGGACA 59.741 42.308 13.29 7.40 34.18 4.02
168 169 6.481644 AGCGTAGTATTGTAGTAGTACTGGAC 59.518 42.308 13.29 4.74 34.18 4.02
169 170 6.586344 AGCGTAGTATTGTAGTAGTACTGGA 58.414 40.000 13.29 0.00 34.18 3.86
170 171 6.857777 AGCGTAGTATTGTAGTAGTACTGG 57.142 41.667 13.29 0.00 34.18 4.00
171 172 9.039870 ACTTAGCGTAGTATTGTAGTAGTACTG 57.960 37.037 13.29 0.00 34.18 2.74
172 173 9.606631 AACTTAGCGTAGTATTGTAGTAGTACT 57.393 33.333 8.14 8.14 36.07 2.73
175 176 9.606631 AGTAACTTAGCGTAGTATTGTAGTAGT 57.393 33.333 0.00 0.00 0.00 2.73
252 253 9.787435 ACCTTAGAGAAATACACACAAAACATA 57.213 29.630 0.00 0.00 0.00 2.29
253 254 8.691661 ACCTTAGAGAAATACACACAAAACAT 57.308 30.769 0.00 0.00 0.00 2.71
254 255 8.514330 AACCTTAGAGAAATACACACAAAACA 57.486 30.769 0.00 0.00 0.00 2.83
258 259 9.280174 CCTTAAACCTTAGAGAAATACACACAA 57.720 33.333 0.00 0.00 0.00 3.33
259 260 7.881232 CCCTTAAACCTTAGAGAAATACACACA 59.119 37.037 0.00 0.00 0.00 3.72
260 261 7.881751 ACCCTTAAACCTTAGAGAAATACACAC 59.118 37.037 0.00 0.00 0.00 3.82
261 262 7.981142 ACCCTTAAACCTTAGAGAAATACACA 58.019 34.615 0.00 0.00 0.00 3.72
262 263 8.859236 AACCCTTAAACCTTAGAGAAATACAC 57.141 34.615 0.00 0.00 0.00 2.90
263 264 9.871175 AAAACCCTTAAACCTTAGAGAAATACA 57.129 29.630 0.00 0.00 0.00 2.29
288 289 3.305744 GGCATTTGACCGGAAGCTAAAAA 60.306 43.478 9.46 0.00 0.00 1.94
289 290 2.230266 GGCATTTGACCGGAAGCTAAAA 59.770 45.455 9.46 0.00 0.00 1.52
290 291 1.816224 GGCATTTGACCGGAAGCTAAA 59.184 47.619 9.46 2.01 0.00 1.85
291 292 1.459450 GGCATTTGACCGGAAGCTAA 58.541 50.000 9.46 0.37 0.00 3.09
292 293 0.393808 GGGCATTTGACCGGAAGCTA 60.394 55.000 9.46 0.00 30.66 3.32
293 294 1.678970 GGGCATTTGACCGGAAGCT 60.679 57.895 9.46 0.00 30.66 3.74
294 295 2.885113 GGGCATTTGACCGGAAGC 59.115 61.111 9.46 1.93 30.66 3.86
300 301 3.751479 AACAAAAGAGGGCATTTGACC 57.249 42.857 5.35 0.00 46.16 4.02
301 302 4.058124 GGAAACAAAAGAGGGCATTTGAC 58.942 43.478 5.35 0.00 38.50 3.18
302 303 3.243704 CGGAAACAAAAGAGGGCATTTGA 60.244 43.478 5.35 0.00 38.50 2.69
303 304 3.059166 CGGAAACAAAAGAGGGCATTTG 58.941 45.455 0.00 0.00 41.24 2.32
304 305 2.698274 ACGGAAACAAAAGAGGGCATTT 59.302 40.909 0.00 0.00 0.00 2.32
305 306 2.035832 CACGGAAACAAAAGAGGGCATT 59.964 45.455 0.00 0.00 0.00 3.56
306 307 1.613437 CACGGAAACAAAAGAGGGCAT 59.387 47.619 0.00 0.00 0.00 4.40
307 308 1.028905 CACGGAAACAAAAGAGGGCA 58.971 50.000 0.00 0.00 0.00 5.36
308 309 1.001706 GACACGGAAACAAAAGAGGGC 60.002 52.381 0.00 0.00 0.00 5.19
309 310 1.607148 GGACACGGAAACAAAAGAGGG 59.393 52.381 0.00 0.00 0.00 4.30
310 311 1.263217 CGGACACGGAAACAAAAGAGG 59.737 52.381 0.00 0.00 36.18 3.69
311 312 1.937899 ACGGACACGGAAACAAAAGAG 59.062 47.619 0.00 0.00 46.48 2.85
312 313 2.027003 ACGGACACGGAAACAAAAGA 57.973 45.000 0.00 0.00 46.48 2.52
313 314 2.836479 AACGGACACGGAAACAAAAG 57.164 45.000 0.00 0.00 46.48 2.27
314 315 3.243336 CAAAACGGACACGGAAACAAAA 58.757 40.909 0.00 0.00 46.48 2.44
315 316 2.228343 ACAAAACGGACACGGAAACAAA 59.772 40.909 0.00 0.00 46.48 2.83
316 317 1.811359 ACAAAACGGACACGGAAACAA 59.189 42.857 0.00 0.00 46.48 2.83
317 318 1.451067 ACAAAACGGACACGGAAACA 58.549 45.000 0.00 0.00 46.48 2.83
318 319 3.883631 ATACAAAACGGACACGGAAAC 57.116 42.857 0.00 0.00 46.48 2.78
319 320 3.875727 TGAATACAAAACGGACACGGAAA 59.124 39.130 0.00 0.00 46.48 3.13
320 321 3.248125 GTGAATACAAAACGGACACGGAA 59.752 43.478 0.00 0.00 46.48 4.30
321 322 2.801679 GTGAATACAAAACGGACACGGA 59.198 45.455 0.00 0.00 46.48 4.69
322 323 2.803956 AGTGAATACAAAACGGACACGG 59.196 45.455 0.00 0.00 46.48 4.94
324 325 3.120786 CGGAGTGAATACAAAACGGACAC 60.121 47.826 0.00 0.00 0.00 3.67
325 326 3.061322 CGGAGTGAATACAAAACGGACA 58.939 45.455 0.00 0.00 0.00 4.02
326 327 3.062042 ACGGAGTGAATACAAAACGGAC 58.938 45.455 0.00 0.00 42.51 4.79
327 328 3.389925 ACGGAGTGAATACAAAACGGA 57.610 42.857 0.00 0.00 42.51 4.69
328 329 4.269363 GGATACGGAGTGAATACAAAACGG 59.731 45.833 0.00 0.00 45.73 4.44
329 330 5.385396 GGATACGGAGTGAATACAAAACG 57.615 43.478 0.00 0.00 45.73 3.60
346 347 8.699283 AAACAGATACTACTGAAAACGGATAC 57.301 34.615 0.00 0.00 40.63 2.24
347 348 7.977853 GGAAACAGATACTACTGAAAACGGATA 59.022 37.037 0.00 0.00 40.63 2.59
348 349 6.817140 GGAAACAGATACTACTGAAAACGGAT 59.183 38.462 0.00 0.00 40.63 4.18
349 350 6.161381 GGAAACAGATACTACTGAAAACGGA 58.839 40.000 0.00 0.00 40.63 4.69
350 351 5.929992 TGGAAACAGATACTACTGAAAACGG 59.070 40.000 0.00 0.00 40.63 4.44
370 371 9.844257 ACAAAAACCTTGAAAATGAATATGGAA 57.156 25.926 0.00 0.00 0.00 3.53
381 382 8.821894 CGGAAATGAATACAAAAACCTTGAAAA 58.178 29.630 0.00 0.00 0.00 2.29
382 383 7.982354 ACGGAAATGAATACAAAAACCTTGAAA 59.018 29.630 0.00 0.00 0.00 2.69
383 384 7.493367 ACGGAAATGAATACAAAAACCTTGAA 58.507 30.769 0.00 0.00 0.00 2.69
384 385 7.045126 ACGGAAATGAATACAAAAACCTTGA 57.955 32.000 0.00 0.00 0.00 3.02
385 386 7.707774 AACGGAAATGAATACAAAAACCTTG 57.292 32.000 0.00 0.00 0.00 3.61
386 387 8.201464 AGAAACGGAAATGAATACAAAAACCTT 58.799 29.630 0.00 0.00 0.00 3.50
387 388 7.651704 CAGAAACGGAAATGAATACAAAAACCT 59.348 33.333 0.00 0.00 0.00 3.50
388 389 7.568679 GCAGAAACGGAAATGAATACAAAAACC 60.569 37.037 0.00 0.00 0.00 3.27
389 390 7.043059 TGCAGAAACGGAAATGAATACAAAAAC 60.043 33.333 0.00 0.00 0.00 2.43
390 391 6.980978 TGCAGAAACGGAAATGAATACAAAAA 59.019 30.769 0.00 0.00 0.00 1.94
391 392 6.507900 TGCAGAAACGGAAATGAATACAAAA 58.492 32.000 0.00 0.00 0.00 2.44
392 393 6.078202 TGCAGAAACGGAAATGAATACAAA 57.922 33.333 0.00 0.00 0.00 2.83
393 394 5.697473 TGCAGAAACGGAAATGAATACAA 57.303 34.783 0.00 0.00 0.00 2.41
394 395 5.697473 TTGCAGAAACGGAAATGAATACA 57.303 34.783 0.00 0.00 0.00 2.29
395 396 7.401484 TTTTTGCAGAAACGGAAATGAATAC 57.599 32.000 0.00 0.00 0.00 1.89
396 397 7.655328 ACATTTTTGCAGAAACGGAAATGAATA 59.345 29.630 4.29 0.00 37.70 1.75
397 398 6.482973 ACATTTTTGCAGAAACGGAAATGAAT 59.517 30.769 4.29 0.00 37.70 2.57
398 399 5.814705 ACATTTTTGCAGAAACGGAAATGAA 59.185 32.000 4.29 0.00 37.70 2.57
399 400 5.355596 ACATTTTTGCAGAAACGGAAATGA 58.644 33.333 4.29 0.00 37.70 2.57
400 401 5.655893 ACATTTTTGCAGAAACGGAAATG 57.344 34.783 4.29 8.03 39.26 2.32
401 402 7.151308 TCATACATTTTTGCAGAAACGGAAAT 58.849 30.769 4.29 0.00 0.00 2.17
402 403 6.507900 TCATACATTTTTGCAGAAACGGAAA 58.492 32.000 4.29 0.00 0.00 3.13
403 404 6.078202 TCATACATTTTTGCAGAAACGGAA 57.922 33.333 4.29 0.00 0.00 4.30
404 405 5.697473 TCATACATTTTTGCAGAAACGGA 57.303 34.783 4.29 0.00 0.00 4.69
405 406 6.761731 TTTCATACATTTTTGCAGAAACGG 57.238 33.333 4.29 3.37 0.00 4.44
406 407 7.616673 TGTTTTCATACATTTTTGCAGAAACG 58.383 30.769 4.29 0.00 0.00 3.60
407 408 9.766277 TTTGTTTTCATACATTTTTGCAGAAAC 57.234 25.926 4.29 0.00 0.00 2.78
418 419 9.801873 GTGCTACCATATTTGTTTTCATACATT 57.198 29.630 0.00 0.00 0.00 2.71
419 420 9.189156 AGTGCTACCATATTTGTTTTCATACAT 57.811 29.630 0.00 0.00 0.00 2.29
420 421 8.574251 AGTGCTACCATATTTGTTTTCATACA 57.426 30.769 0.00 0.00 0.00 2.29
422 423 9.899661 ACTAGTGCTACCATATTTGTTTTCATA 57.100 29.630 0.00 0.00 0.00 2.15
423 424 8.807948 ACTAGTGCTACCATATTTGTTTTCAT 57.192 30.769 0.00 0.00 0.00 2.57
424 425 8.630054 AACTAGTGCTACCATATTTGTTTTCA 57.370 30.769 0.00 0.00 0.00 2.69
425 426 8.182227 GGAACTAGTGCTACCATATTTGTTTTC 58.818 37.037 0.00 0.00 0.00 2.29
426 427 7.148306 CGGAACTAGTGCTACCATATTTGTTTT 60.148 37.037 0.00 0.00 0.00 2.43
427 428 6.315393 CGGAACTAGTGCTACCATATTTGTTT 59.685 38.462 0.00 0.00 0.00 2.83
428 429 5.815740 CGGAACTAGTGCTACCATATTTGTT 59.184 40.000 0.00 0.00 0.00 2.83
429 430 5.105064 ACGGAACTAGTGCTACCATATTTGT 60.105 40.000 0.00 0.00 0.00 2.83
430 431 5.357257 ACGGAACTAGTGCTACCATATTTG 58.643 41.667 0.00 0.00 0.00 2.32
431 432 5.609533 ACGGAACTAGTGCTACCATATTT 57.390 39.130 0.00 0.00 0.00 1.40
432 433 5.598769 GAACGGAACTAGTGCTACCATATT 58.401 41.667 0.00 0.00 0.00 1.28
433 434 4.261489 CGAACGGAACTAGTGCTACCATAT 60.261 45.833 0.00 0.00 0.00 1.78
434 435 3.065786 CGAACGGAACTAGTGCTACCATA 59.934 47.826 0.00 0.00 0.00 2.74
435 436 2.159282 CGAACGGAACTAGTGCTACCAT 60.159 50.000 0.00 0.00 0.00 3.55
436 437 1.200716 CGAACGGAACTAGTGCTACCA 59.799 52.381 0.00 0.00 0.00 3.25
437 438 1.200948 ACGAACGGAACTAGTGCTACC 59.799 52.381 0.00 0.11 0.00 3.18
438 439 2.626088 ACGAACGGAACTAGTGCTAC 57.374 50.000 0.00 0.00 0.00 3.58
439 440 3.568538 GAAACGAACGGAACTAGTGCTA 58.431 45.455 0.00 0.00 0.00 3.49
440 441 2.401351 GAAACGAACGGAACTAGTGCT 58.599 47.619 0.00 0.00 0.00 4.40
441 442 1.458445 GGAAACGAACGGAACTAGTGC 59.542 52.381 0.00 0.00 0.00 4.40
442 443 2.064014 GGGAAACGAACGGAACTAGTG 58.936 52.381 0.00 0.00 0.00 2.74
443 444 1.001293 GGGGAAACGAACGGAACTAGT 59.999 52.381 0.00 0.00 0.00 2.57
444 445 1.274447 AGGGGAAACGAACGGAACTAG 59.726 52.381 0.00 0.00 0.00 2.57
445 446 1.273327 GAGGGGAAACGAACGGAACTA 59.727 52.381 0.00 0.00 0.00 2.24
446 447 0.034476 GAGGGGAAACGAACGGAACT 59.966 55.000 0.00 0.00 0.00 3.01
447 448 0.952497 GGAGGGGAAACGAACGGAAC 60.952 60.000 0.00 0.00 0.00 3.62
448 449 1.372307 GGAGGGGAAACGAACGGAA 59.628 57.895 0.00 0.00 0.00 4.30
449 450 2.934570 CGGAGGGGAAACGAACGGA 61.935 63.158 0.00 0.00 0.00 4.69
450 451 2.433664 CGGAGGGGAAACGAACGG 60.434 66.667 0.00 0.00 0.00 4.44
451 452 0.881600 AAACGGAGGGGAAACGAACG 60.882 55.000 0.00 0.00 0.00 3.95
452 453 1.265095 GAAAACGGAGGGGAAACGAAC 59.735 52.381 0.00 0.00 0.00 3.95
453 454 1.134159 TGAAAACGGAGGGGAAACGAA 60.134 47.619 0.00 0.00 0.00 3.85
454 455 0.469070 TGAAAACGGAGGGGAAACGA 59.531 50.000 0.00 0.00 0.00 3.85
455 456 1.467342 GATGAAAACGGAGGGGAAACG 59.533 52.381 0.00 0.00 0.00 3.60
456 457 1.816835 GGATGAAAACGGAGGGGAAAC 59.183 52.381 0.00 0.00 0.00 2.78
457 458 1.708551 AGGATGAAAACGGAGGGGAAA 59.291 47.619 0.00 0.00 0.00 3.13
458 459 1.368374 AGGATGAAAACGGAGGGGAA 58.632 50.000 0.00 0.00 0.00 3.97
459 460 2.257391 TAGGATGAAAACGGAGGGGA 57.743 50.000 0.00 0.00 0.00 4.81
460 461 3.554337 CGTATAGGATGAAAACGGAGGGG 60.554 52.174 0.00 0.00 0.00 4.79
461 462 3.650139 CGTATAGGATGAAAACGGAGGG 58.350 50.000 0.00 0.00 0.00 4.30
466 467 3.805971 GGTTCCCGTATAGGATGAAAACG 59.194 47.826 0.00 0.00 45.00 3.60
467 468 4.573607 GTGGTTCCCGTATAGGATGAAAAC 59.426 45.833 0.00 0.00 45.00 2.43
468 469 4.472108 AGTGGTTCCCGTATAGGATGAAAA 59.528 41.667 0.00 0.00 45.00 2.29
469 470 4.035112 AGTGGTTCCCGTATAGGATGAAA 58.965 43.478 0.00 0.00 45.00 2.69
470 471 3.649843 AGTGGTTCCCGTATAGGATGAA 58.350 45.455 0.00 0.00 45.00 2.57
471 472 3.323774 AGTGGTTCCCGTATAGGATGA 57.676 47.619 0.00 0.00 45.00 2.92
472 473 3.510360 CCTAGTGGTTCCCGTATAGGATG 59.490 52.174 0.00 0.00 45.00 3.51
473 474 3.775910 CCTAGTGGTTCCCGTATAGGAT 58.224 50.000 0.00 0.00 45.00 3.24
474 475 2.754186 GCCTAGTGGTTCCCGTATAGGA 60.754 54.545 8.59 0.00 37.74 2.94
475 476 1.617357 GCCTAGTGGTTCCCGTATAGG 59.383 57.143 0.00 0.00 36.15 2.57
476 477 1.617357 GGCCTAGTGGTTCCCGTATAG 59.383 57.143 0.00 0.00 35.27 1.31
477 478 1.063038 TGGCCTAGTGGTTCCCGTATA 60.063 52.381 3.32 0.00 35.27 1.47
480 481 2.203877 TGGCCTAGTGGTTCCCGT 60.204 61.111 3.32 0.00 35.27 5.28
724 790 2.354305 GAAGTCGTCCACGCACGT 60.354 61.111 0.00 0.00 40.79 4.49
960 1032 2.372690 CGGTGCAGGAACGTTCGAG 61.373 63.158 21.34 16.58 0.00 4.04
974 1046 6.987386 AGAGATAAAGATACCAGAATCGGTG 58.013 40.000 6.96 0.00 40.39 4.94
976 1048 6.435904 AGGAGAGATAAAGATACCAGAATCGG 59.564 42.308 0.00 0.00 0.00 4.18
988 1060 9.642343 TGCAAGTAGTTATAGGAGAGATAAAGA 57.358 33.333 0.00 0.00 0.00 2.52
989 1061 9.906660 CTGCAAGTAGTTATAGGAGAGATAAAG 57.093 37.037 0.00 0.00 0.00 1.85
990 1062 8.861086 CCTGCAAGTAGTTATAGGAGAGATAAA 58.139 37.037 6.26 0.00 0.00 1.40
991 1063 7.039644 GCCTGCAAGTAGTTATAGGAGAGATAA 60.040 40.741 13.54 0.00 0.00 1.75
1037 1109 2.092838 GCTATGTTCGCTGTTGACTGAC 59.907 50.000 0.00 0.00 0.00 3.51
1051 1123 4.911390 AGGAAGCAAACTGTAGCTATGTT 58.089 39.130 7.91 2.96 40.90 2.71
1072 1144 3.746492 AGACCGATCGAAAACCAAAGAAG 59.254 43.478 18.66 0.00 0.00 2.85
1084 1156 2.713770 GCGCAGTAGACCGATCGA 59.286 61.111 18.66 0.00 0.00 3.59
1086 1158 3.025176 GCGCGCAGTAGACCGATC 61.025 66.667 29.10 0.00 0.00 3.69
1103 1175 4.368808 CCTCCACACAAACGCGCG 62.369 66.667 30.96 30.96 0.00 6.86
1104 1176 2.954753 CTCCTCCACACAAACGCGC 61.955 63.158 5.73 0.00 0.00 6.86
1105 1177 1.157870 AACTCCTCCACACAAACGCG 61.158 55.000 3.53 3.53 0.00 6.01
1106 1178 1.021968 AAACTCCTCCACACAAACGC 58.978 50.000 0.00 0.00 0.00 4.84
1107 1179 2.422127 ACAAAACTCCTCCACACAAACG 59.578 45.455 0.00 0.00 0.00 3.60
1108 1180 3.442273 TGACAAAACTCCTCCACACAAAC 59.558 43.478 0.00 0.00 0.00 2.93
1109 1181 3.691575 TGACAAAACTCCTCCACACAAA 58.308 40.909 0.00 0.00 0.00 2.83
1110 1182 3.358111 TGACAAAACTCCTCCACACAA 57.642 42.857 0.00 0.00 0.00 3.33
1111 1183 3.213506 CATGACAAAACTCCTCCACACA 58.786 45.455 0.00 0.00 0.00 3.72
1112 1184 2.554032 CCATGACAAAACTCCTCCACAC 59.446 50.000 0.00 0.00 0.00 3.82
1113 1185 2.862541 CCATGACAAAACTCCTCCACA 58.137 47.619 0.00 0.00 0.00 4.17
1114 1186 1.541588 GCCATGACAAAACTCCTCCAC 59.458 52.381 0.00 0.00 0.00 4.02
1115 1187 1.547675 GGCCATGACAAAACTCCTCCA 60.548 52.381 0.00 0.00 0.00 3.86
1116 1188 1.177401 GGCCATGACAAAACTCCTCC 58.823 55.000 0.00 0.00 0.00 4.30
1117 1189 1.815003 CTGGCCATGACAAAACTCCTC 59.185 52.381 5.51 0.00 0.00 3.71
1118 1190 1.548582 CCTGGCCATGACAAAACTCCT 60.549 52.381 5.51 0.00 0.00 3.69
1119 1191 0.890683 CCTGGCCATGACAAAACTCC 59.109 55.000 5.51 0.00 0.00 3.85
1120 1192 1.541588 GACCTGGCCATGACAAAACTC 59.458 52.381 15.66 0.00 0.00 3.01
1121 1193 1.133513 TGACCTGGCCATGACAAAACT 60.134 47.619 15.66 0.00 0.00 2.66
1122 1194 1.327303 TGACCTGGCCATGACAAAAC 58.673 50.000 15.66 0.00 0.00 2.43
1123 1195 1.894466 CATGACCTGGCCATGACAAAA 59.106 47.619 17.00 0.00 42.89 2.44
1124 1196 1.548081 CATGACCTGGCCATGACAAA 58.452 50.000 17.00 0.00 42.89 2.83
1125 1197 0.323633 CCATGACCTGGCCATGACAA 60.324 55.000 22.63 0.00 42.89 3.18
1126 1198 1.303948 CCATGACCTGGCCATGACA 59.696 57.895 22.63 15.09 42.89 3.58
1444 1516 1.797025 GGTCGAAGTTGTGGAGGAAG 58.203 55.000 0.00 0.00 0.00 3.46
1454 1526 1.154338 CGTAGACGCGGTCGAAGTT 60.154 57.895 12.47 0.00 37.67 2.66
1975 2047 3.243941 TGTCTTTTTGTCGGAAGATCGGA 60.244 43.478 0.00 0.00 45.19 4.55
1987 2059 0.179067 TCGAGGCCGTGTCTTTTTGT 60.179 50.000 0.00 0.00 37.05 2.83
2047 2119 3.470888 AGTTCCATCCCCGAGCCG 61.471 66.667 0.00 0.00 0.00 5.52
2050 2122 2.202932 CGCAGTTCCATCCCCGAG 60.203 66.667 0.00 0.00 0.00 4.63
2218 2290 0.975040 GCCTCTCCCTCAGCTTCTCA 60.975 60.000 0.00 0.00 0.00 3.27
2237 2309 2.365586 CCACCTGCCCTCCTCTCAG 61.366 68.421 0.00 0.00 0.00 3.35
2474 2546 1.456296 TCGTCGTACCAGCACATACT 58.544 50.000 0.00 0.00 0.00 2.12
2529 2601 3.642778 ATCGTCGTTGACCAGGCCG 62.643 63.158 0.00 0.00 0.00 6.13
2554 2626 9.755804 AGTATCTACACATTTACACATGATGAG 57.244 33.333 0.00 0.00 0.00 2.90
2572 2644 9.050601 ACTTTCCTACACGTATACAGTATCTAC 57.949 37.037 3.32 0.00 0.00 2.59
2577 2649 7.870509 ATGACTTTCCTACACGTATACAGTA 57.129 36.000 3.32 4.56 0.00 2.74
2578 2650 6.770746 ATGACTTTCCTACACGTATACAGT 57.229 37.500 3.32 3.57 0.00 3.55
2579 2651 7.544566 ACAAATGACTTTCCTACACGTATACAG 59.455 37.037 3.32 0.00 0.00 2.74
2580 2652 7.380536 ACAAATGACTTTCCTACACGTATACA 58.619 34.615 3.32 0.00 0.00 2.29
2581 2653 7.823149 ACAAATGACTTTCCTACACGTATAC 57.177 36.000 0.00 0.00 0.00 1.47
2598 2670 9.631257 AATGATCTTGTGGATGTATACAAATGA 57.369 29.630 10.14 2.66 36.47 2.57
2612 2684 2.223409 CGTGCCATCAATGATCTTGTGG 60.223 50.000 0.00 14.62 0.00 4.17
2616 2688 2.715046 ACACGTGCCATCAATGATCTT 58.285 42.857 17.22 0.00 0.00 2.40
2629 2701 2.187351 ATTGACACAACAACACGTGC 57.813 45.000 17.22 0.00 36.57 5.34
2631 2703 9.176181 GAAAAATATATTGACACAACAACACGT 57.824 29.630 0.00 0.00 32.50 4.49
2632 2704 8.635124 GGAAAAATATATTGACACAACAACACG 58.365 33.333 0.00 0.00 32.50 4.49
2633 2705 9.469807 TGGAAAAATATATTGACACAACAACAC 57.530 29.630 0.00 0.00 32.50 3.32
2636 2708 9.186323 CGTTGGAAAAATATATTGACACAACAA 57.814 29.630 22.39 11.60 35.50 2.83
2637 2709 8.568794 TCGTTGGAAAAATATATTGACACAACA 58.431 29.630 22.39 13.91 35.50 3.33
2638 2710 8.958175 TCGTTGGAAAAATATATTGACACAAC 57.042 30.769 17.56 17.56 33.24 3.32
2639 2711 9.566530 CATCGTTGGAAAAATATATTGACACAA 57.433 29.630 0.00 0.99 0.00 3.33
2640 2712 8.951243 TCATCGTTGGAAAAATATATTGACACA 58.049 29.630 0.00 0.00 0.00 3.72
2641 2713 9.781834 TTCATCGTTGGAAAAATATATTGACAC 57.218 29.630 0.00 0.00 0.00 3.67
2737 2811 2.795175 AGTCGTCCAATATGTAGGCG 57.205 50.000 0.00 0.00 0.00 5.52
2779 2853 1.562672 AACCCAATCCTCTCCCACCG 61.563 60.000 0.00 0.00 0.00 4.94
2795 2869 6.167685 AGTTAAAACCCAAGTTTGACAAACC 58.832 36.000 24.09 9.33 45.54 3.27
2802 2878 8.180920 CCAAATTCAAGTTAAAACCCAAGTTTG 58.819 33.333 0.00 0.00 45.54 2.93
2828 2904 8.988064 TCAAGTGTGAGACATAAAGATAGAAC 57.012 34.615 0.00 0.00 0.00 3.01
2850 2926 3.192944 ACTCCTGATTCAATCCCCTCAA 58.807 45.455 0.00 0.00 0.00 3.02
2866 2942 5.046014 ACATCTAGCAATGTCTCAAACTCCT 60.046 40.000 0.00 0.00 34.84 3.69
2880 2956 5.643777 GCAACTTCTAAGGAACATCTAGCAA 59.356 40.000 0.00 0.00 0.00 3.91
2889 2965 6.500684 TCAATGATGCAACTTCTAAGGAAC 57.499 37.500 0.00 0.00 0.00 3.62
2901 2977 3.495377 GCTTTGTGCTTTCAATGATGCAA 59.505 39.130 11.75 2.74 37.17 4.08
2904 2980 3.311106 ACGCTTTGTGCTTTCAATGATG 58.689 40.909 0.00 0.00 40.11 3.07
2908 2984 3.066064 TGTGTACGCTTTGTGCTTTCAAT 59.934 39.130 8.10 0.00 40.11 2.57
2915 2991 2.900122 ATCATGTGTACGCTTTGTGC 57.100 45.000 8.10 0.00 38.57 4.57
2916 2992 5.276240 TGTTATCATGTGTACGCTTTGTG 57.724 39.130 8.10 2.20 0.00 3.33
2917 2993 4.142902 GCTGTTATCATGTGTACGCTTTGT 60.143 41.667 8.10 0.00 0.00 2.83
2919 2995 3.062099 CGCTGTTATCATGTGTACGCTTT 59.938 43.478 8.10 0.00 0.00 3.51
2922 2998 1.257936 CCGCTGTTATCATGTGTACGC 59.742 52.381 0.00 0.00 0.00 4.42
2956 3032 3.042682 TCCGGGCTGATCCAAAGTTATA 58.957 45.455 0.00 0.00 36.21 0.98
3029 3105 1.894756 CCAAAAACGCCCTCCGACA 60.895 57.895 0.00 0.00 41.02 4.35
3055 3131 1.360551 CTGTGGTCCTCGCTATCGG 59.639 63.158 0.00 0.00 36.13 4.18
3069 3145 0.935898 GCTTCATCATCCTCGCTGTG 59.064 55.000 0.00 0.00 0.00 3.66
3072 3148 1.068753 CCGCTTCATCATCCTCGCT 59.931 57.895 0.00 0.00 0.00 4.93
3073 3149 1.958205 CCCGCTTCATCATCCTCGC 60.958 63.158 0.00 0.00 0.00 5.03
3074 3150 1.958205 GCCCGCTTCATCATCCTCG 60.958 63.158 0.00 0.00 0.00 4.63
3149 3225 2.600790 TCCTCCTTGTTGTAGTCGGAA 58.399 47.619 0.00 0.00 0.00 4.30
3154 3230 2.290323 GCCACATCCTCCTTGTTGTAGT 60.290 50.000 0.00 0.00 0.00 2.73
3224 3439 4.874977 GCCTCTCCCGCGTGTAGC 62.875 72.222 4.92 0.00 43.95 3.58
3279 3494 4.695231 CCGAACTGCCGACGACGT 62.695 66.667 0.00 0.00 37.88 4.34
3290 3505 1.527370 GCCCTTCTATGGCCGAACT 59.473 57.895 0.00 0.00 43.33 3.01
3312 3527 4.344865 GCAGCGGACCTTGGGGAA 62.345 66.667 0.00 0.00 36.25 3.97
3323 3538 4.812476 TGAATCCGGACGCAGCGG 62.812 66.667 21.15 0.32 34.50 5.52
3324 3539 2.586079 ATGAATCCGGACGCAGCG 60.586 61.111 14.82 14.82 0.00 5.18
3346 3589 2.189594 TCTTCTTCCTGACGACCGTA 57.810 50.000 0.00 0.00 0.00 4.02
3416 3659 0.250901 AGCACCGGTGATTCTTGCTT 60.251 50.000 38.30 7.82 40.66 3.91
3417 3660 0.674895 GAGCACCGGTGATTCTTGCT 60.675 55.000 38.30 25.21 46.12 3.91
3420 3663 4.598257 CGAGCACCGGTGATTCTT 57.402 55.556 38.30 16.45 33.91 2.52
3511 3754 0.253044 CCACATACCCAGGTGAGGTG 59.747 60.000 0.00 5.15 38.76 4.00
3513 3756 1.224592 GCCACATACCCAGGTGAGG 59.775 63.158 0.00 0.00 38.76 3.86
3535 3778 2.885644 TCGATCAGGCTTTCGCGC 60.886 61.111 0.00 0.00 36.88 6.86
3537 3780 2.002127 CTGTCGATCAGGCTTTCGC 58.998 57.895 10.85 7.56 40.23 4.70
3550 3793 0.099613 CGTCTGATCCTGTCCTGTCG 59.900 60.000 0.00 0.00 0.00 4.35
3553 3796 0.972983 ACCCGTCTGATCCTGTCCTG 60.973 60.000 0.00 0.00 0.00 3.86
3554 3797 0.629596 TACCCGTCTGATCCTGTCCT 59.370 55.000 0.00 0.00 0.00 3.85
3559 3802 1.464376 CCGCATACCCGTCTGATCCT 61.464 60.000 0.00 0.00 0.00 3.24
3578 3821 2.126031 GACCGAACCAGACCGAGC 60.126 66.667 0.00 0.00 0.00 5.03
3580 3823 2.281692 TCGACCGAACCAGACCGA 60.282 61.111 0.00 0.00 0.00 4.69
3581 3824 2.126580 GTCGACCGAACCAGACCG 60.127 66.667 3.51 0.00 0.00 4.79
3628 3871 2.168521 TGGATGTTCTGGATTCTCGACC 59.831 50.000 0.00 0.00 0.00 4.79
3629 3872 3.190874 GTGGATGTTCTGGATTCTCGAC 58.809 50.000 0.00 0.00 0.00 4.20
3655 3898 1.516603 GTCCTCGTCGCTAGCCAAC 60.517 63.158 9.66 6.99 0.00 3.77
3674 3917 0.391263 CTCCACCGAACCCTAGTTGC 60.391 60.000 0.00 0.00 35.94 4.17
3676 3919 1.551019 GCCTCCACCGAACCCTAGTT 61.551 60.000 0.00 0.00 39.54 2.24
3677 3920 1.988406 GCCTCCACCGAACCCTAGT 60.988 63.158 0.00 0.00 0.00 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.