Multiple sequence alignment - TraesCS4A01G094600
Loading Multiple Alignment...
BLAST Results
BLAST Results - Input Sequence
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this
to extract flanking regions for cloning. If the result of the multiple sequence alignment is
not as expected, these results could be used for further investigation.
qseqid
sseqid
percentage.identical
alignment.length
no.mismatch
no.gap.openings
qstart
qend
sstart
send
evalue
bitscore
0
TraesCS4A01G094600
chr4A
100.000
6506
0
0
1
6506
102831685
102838190
0.000000e+00
12015.0
1
TraesCS4A01G094600
chr4D
90.437
2541
111
51
628
3097
362448135
362445656
0.000000e+00
3225.0
2
TraesCS4A01G094600
chr4D
93.057
1325
47
17
4743
6056
362445099
362443809
0.000000e+00
1895.0
3
TraesCS4A01G094600
chr4D
86.837
547
33
14
98
618
362448722
362448189
5.660000e-160
575.0
4
TraesCS4A01G094600
chr4D
91.872
406
10
5
3124
3519
362445513
362445121
4.440000e-151
545.0
5
TraesCS4A01G094600
chr4D
93.252
163
10
1
6106
6267
362443384
362443222
8.430000e-59
239.0
6
TraesCS4A01G094600
chr4B
92.962
1293
56
15
4742
6028
447767003
447765740
0.000000e+00
1851.0
7
TraesCS4A01G094600
chr4B
90.173
1099
50
24
628
1688
447771429
447770351
0.000000e+00
1378.0
8
TraesCS4A01G094600
chr4B
88.710
992
42
29
1754
2704
447770355
447769393
0.000000e+00
1147.0
9
TraesCS4A01G094600
chr4B
92.269
401
20
7
3127
3520
447767427
447767031
5.700000e-155
558.0
10
TraesCS4A01G094600
chr4B
91.111
315
27
1
6186
6499
447765281
447764967
6.030000e-115
425.0
11
TraesCS4A01G094600
chr4B
83.979
387
35
17
2716
3087
447767806
447767432
4.830000e-91
346.0
12
TraesCS4A01G094600
chr4B
85.366
287
19
9
348
618
447794278
447793999
6.430000e-70
276.0
13
TraesCS4A01G094600
chr4B
81.818
220
33
3
3615
3833
470308854
470308641
1.860000e-40
178.0
14
TraesCS4A01G094600
chr4B
75.904
332
72
7
1564
1891
639011188
639010861
5.220000e-36
163.0
15
TraesCS4A01G094600
chr7A
93.361
1220
38
11
3519
4722
706849906
706848714
0.000000e+00
1764.0
16
TraesCS4A01G094600
chr7A
83.024
807
95
30
3818
4594
726426606
726427400
0.000000e+00
693.0
17
TraesCS4A01G094600
chr7A
77.249
189
32
11
4448
4630
446367368
446367551
4.150000e-17
100.0
18
TraesCS4A01G094600
chr7D
88.732
1136
95
28
3612
4722
88318191
88317064
0.000000e+00
1358.0
19
TraesCS4A01G094600
chr7D
79.688
896
123
44
3870
4723
199920334
199919456
5.620000e-165
592.0
20
TraesCS4A01G094600
chr7D
85.417
96
7
1
3519
3607
413681010
413681105
6.950000e-15
93.5
21
TraesCS4A01G094600
chr2D
87.229
924
91
23
3819
4725
639272082
639271169
0.000000e+00
1027.0
22
TraesCS4A01G094600
chr3B
86.022
930
88
27
3819
4722
712184819
712183906
0.000000e+00
959.0
23
TraesCS4A01G094600
chr3B
100.000
29
0
0
5991
6019
553993378
553993350
3.000000e-03
54.7
24
TraesCS4A01G094600
chr1D
84.183
942
108
30
3819
4723
444920030
444920967
0.000000e+00
876.0
25
TraesCS4A01G094600
chr1D
84.507
71
8
3
1255
1323
269515961
269515892
4.210000e-07
67.6
26
TraesCS4A01G094600
chr2B
84.153
915
96
25
3819
4722
680525667
680524791
0.000000e+00
841.0
27
TraesCS4A01G094600
chr2B
97.143
35
1
0
1
35
24700520
24700554
7.040000e-05
60.2
28
TraesCS4A01G094600
chr2B
100.000
29
0
0
3521
3549
671104645
671104673
3.000000e-03
54.7
29
TraesCS4A01G094600
chr1B
86.300
781
84
19
3819
4582
640785179
640785953
0.000000e+00
828.0
30
TraesCS4A01G094600
chr1B
84.507
71
8
3
1255
1323
369512113
369512182
4.210000e-07
67.6
31
TraesCS4A01G094600
chr3D
83.802
889
85
29
3844
4723
118412655
118411817
0.000000e+00
789.0
32
TraesCS4A01G094600
chr5A
85.037
802
78
21
3812
4602
2833196
2833966
0.000000e+00
778.0
33
TraesCS4A01G094600
chr7B
80.986
710
82
36
4054
4723
743990632
743989936
1.250000e-141
514.0
34
TraesCS4A01G094600
chr5D
83.370
457
38
28
4298
4722
321374446
321373996
7.910000e-104
388.0
35
TraesCS4A01G094600
chr6B
86.626
329
24
8
3518
3826
101176805
101176477
4.830000e-91
346.0
36
TraesCS4A01G094600
chr6B
91.667
48
4
0
4777
4824
479396878
479396925
4.210000e-07
67.6
37
TraesCS4A01G094600
chr6B
100.000
30
0
0
5990
6019
719993125
719993096
1.000000e-03
56.5
38
TraesCS4A01G094600
chr1A
77.116
319
71
2
1565
1882
333499018
333499335
4.010000e-42
183.0
39
TraesCS4A01G094600
chr1A
84.507
71
8
3
1255
1323
333498713
333498782
4.210000e-07
67.6
40
TraesCS4A01G094600
chrUn
77.077
349
38
13
3518
3833
88910550
88910889
5.220000e-36
163.0
41
TraesCS4A01G094600
chr5B
86.364
110
14
1
4579
4687
118965346
118965237
1.150000e-22
119.0
42
TraesCS4A01G094600
chr6D
95.238
42
2
0
4783
4824
341078787
341078746
4.210000e-07
67.6
43
TraesCS4A01G094600
chr6A
95.238
42
2
0
4783
4824
480805906
480805865
4.210000e-07
67.6
BLAST Results - HSPs grouped
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the
BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are
purely upstream or downstream may be removed if they don't overlap both primers.
query
scaffold
start
end
length
rev.comp
avg.bitscore
max.bitscore
avg.percent.identical
query.start
query.end
num_hsp
groupid
homo_length
0
TraesCS4A01G094600
chr4A
102831685
102838190
6505
False
12015.000000
12015
100.000000
1
6506
1
chr4A.!!$F1
6505
1
TraesCS4A01G094600
chr4D
362443222
362448722
5500
True
1295.800000
3225
91.091000
98
6267
5
chr4D.!!$R1
6169
2
TraesCS4A01G094600
chr4B
447764967
447771429
6462
True
950.833333
1851
89.867333
628
6499
6
chr4B.!!$R4
5871
3
TraesCS4A01G094600
chr7A
706848714
706849906
1192
True
1764.000000
1764
93.361000
3519
4722
1
chr7A.!!$R1
1203
4
TraesCS4A01G094600
chr7A
726426606
726427400
794
False
693.000000
693
83.024000
3818
4594
1
chr7A.!!$F2
776
5
TraesCS4A01G094600
chr7D
88317064
88318191
1127
True
1358.000000
1358
88.732000
3612
4722
1
chr7D.!!$R1
1110
6
TraesCS4A01G094600
chr7D
199919456
199920334
878
True
592.000000
592
79.688000
3870
4723
1
chr7D.!!$R2
853
7
TraesCS4A01G094600
chr2D
639271169
639272082
913
True
1027.000000
1027
87.229000
3819
4725
1
chr2D.!!$R1
906
8
TraesCS4A01G094600
chr3B
712183906
712184819
913
True
959.000000
959
86.022000
3819
4722
1
chr3B.!!$R2
903
9
TraesCS4A01G094600
chr1D
444920030
444920967
937
False
876.000000
876
84.183000
3819
4723
1
chr1D.!!$F1
904
10
TraesCS4A01G094600
chr2B
680524791
680525667
876
True
841.000000
841
84.153000
3819
4722
1
chr2B.!!$R1
903
11
TraesCS4A01G094600
chr1B
640785179
640785953
774
False
828.000000
828
86.300000
3819
4582
1
chr1B.!!$F2
763
12
TraesCS4A01G094600
chr3D
118411817
118412655
838
True
789.000000
789
83.802000
3844
4723
1
chr3D.!!$R1
879
13
TraesCS4A01G094600
chr5A
2833196
2833966
770
False
778.000000
778
85.037000
3812
4602
1
chr5A.!!$F1
790
14
TraesCS4A01G094600
chr7B
743989936
743990632
696
True
514.000000
514
80.986000
4054
4723
1
chr7B.!!$R1
669
AutoCloner calculated primer pairs
These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3),
whilst remaining within the specified product range where possible.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
630
656
0.106894
GTCGGAACCCCATCCATCTC
59.893
60.0
0.00
0.00
39.61
2.75
F
732
825
0.168788
CACCAGGCGCATAGTTGTTG
59.831
55.0
10.83
0.00
0.00
3.33
F
2577
2748
0.030603
AACCACCACCCCAACCAATT
60.031
50.0
0.00
0.00
0.00
2.32
F
2580
2751
0.316841
CACCACCCCAACCAATTTCG
59.683
55.0
0.00
0.00
0.00
3.46
F
2838
4597
0.462047
CAGGGTACGTGGATGGCTTC
60.462
60.0
0.00
0.00
40.97
3.86
F
3120
4928
0.514255
CAGTGTCACGAATGCACCAG
59.486
55.0
0.00
0.00
35.00
4.00
F
4735
6852
0.179243
ATTTCCGTTTAACGCGACGC
60.179
50.0
15.93
10.49
40.91
5.19
F
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
Orientation
2320
2459
0.110644
GAGCAAGCGTTCGTCTTTGG
60.111
55.0
0.00
0.0
0.00
3.28
R
2623
2794
0.170339
GTATGAAAAGGTGGTGCGGC
59.830
55.0
0.00
0.0
0.00
6.53
R
3430
5359
0.315568
TGGAAATTTGAAACGGGCGG
59.684
50.0
0.00
0.0
0.00
6.13
R
3505
5434
0.802494
AGCTCCCGCGTTAAACAATG
59.198
50.0
4.92
0.0
42.32
2.82
R
4734
6851
0.675633
ATGTCCACCTGCACAAAAGC
59.324
50.0
0.00
0.0
0.00
3.51
R
4737
6854
0.888736
CGGATGTCCACCTGCACAAA
60.889
55.0
0.00
0.0
35.14
2.83
R
6086
8216
0.036388
TTAGCAAGGGTTCAGGAGCG
60.036
55.0
0.00
0.0
0.00
5.03
R
All possible primers
Listed here are all possible primers based on the multiple sequence alignment and SNPs generated
previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work
during PCR or sequencing,
these could be used as alternatives.
Forward
Primers
Reverse
Primers
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
17
18
3.617368
ATCGGGTTCCTGGAGACG
58.383
61.111
9.53
9.53
0.00
4.18
18
19
2.722201
ATCGGGTTCCTGGAGACGC
61.722
63.158
10.59
11.71
0.00
5.19
19
20
4.796231
CGGGTTCCTGGAGACGCG
62.796
72.222
22.91
22.91
43.81
6.01
20
21
3.379445
GGGTTCCTGGAGACGCGA
61.379
66.667
15.93
0.00
0.00
5.87
21
22
2.126031
GGTTCCTGGAGACGCGAC
60.126
66.667
15.93
6.86
0.00
5.19
22
23
2.637383
GGTTCCTGGAGACGCGACT
61.637
63.158
15.93
13.61
0.00
4.18
23
24
1.444553
GTTCCTGGAGACGCGACTG
60.445
63.158
17.32
1.19
0.00
3.51
24
25
2.636412
TTCCTGGAGACGCGACTGG
61.636
63.158
17.32
11.38
0.00
4.00
25
26
4.135153
CCTGGAGACGCGACTGGG
62.135
72.222
17.32
11.15
0.00
4.45
26
27
4.803426
CTGGAGACGCGACTGGGC
62.803
72.222
17.32
1.14
0.00
5.36
32
33
4.922026
ACGCGACTGGGCCGTTTT
62.922
61.111
15.93
0.00
0.00
2.43
33
34
3.656045
CGCGACTGGGCCGTTTTT
61.656
61.111
0.00
0.00
0.00
1.94
50
51
2.795175
TTTTTGACGCCGGCATAAAA
57.205
40.000
28.98
24.36
0.00
1.52
51
52
2.795175
TTTTGACGCCGGCATAAAAA
57.205
40.000
28.98
21.07
0.00
1.94
73
74
3.878160
AATCGTCTGAGAAGGTCTTCC
57.122
47.619
7.06
0.87
40.33
3.46
75
76
3.715638
TCGTCTGAGAAGGTCTTCCTA
57.284
47.619
7.06
0.00
44.35
2.94
76
77
4.030314
TCGTCTGAGAAGGTCTTCCTAA
57.970
45.455
7.06
0.00
44.35
2.69
77
78
4.404640
TCGTCTGAGAAGGTCTTCCTAAA
58.595
43.478
7.06
0.00
44.35
1.85
78
79
4.459685
TCGTCTGAGAAGGTCTTCCTAAAG
59.540
45.833
7.06
1.52
44.35
1.85
79
80
4.381079
CGTCTGAGAAGGTCTTCCTAAAGG
60.381
50.000
7.06
0.00
44.35
3.11
80
81
3.515901
TCTGAGAAGGTCTTCCTAAAGGC
59.484
47.826
7.06
0.00
44.35
4.35
81
82
2.233922
TGAGAAGGTCTTCCTAAAGGCG
59.766
50.000
7.06
0.00
44.35
5.52
82
83
1.066071
AGAAGGTCTTCCTAAAGGCGC
60.066
52.381
0.00
0.00
44.35
6.53
83
84
0.391263
AAGGTCTTCCTAAAGGCGCG
60.391
55.000
0.00
0.00
44.35
6.86
84
85
1.814169
GGTCTTCCTAAAGGCGCGG
60.814
63.158
8.83
0.00
38.03
6.46
85
86
2.125269
TCTTCCTAAAGGCGCGGC
60.125
61.111
27.06
27.06
33.03
6.53
86
87
2.125106
CTTCCTAAAGGCGCGGCT
60.125
61.111
31.39
31.39
34.44
5.52
87
88
2.435938
TTCCTAAAGGCGCGGCTG
60.436
61.111
36.94
23.09
34.44
4.85
88
89
2.852495
CTTCCTAAAGGCGCGGCTGA
62.852
60.000
36.94
25.09
34.44
4.26
89
90
2.435938
CCTAAAGGCGCGGCTGAA
60.436
61.111
36.94
24.67
0.00
3.02
90
91
2.464459
CCTAAAGGCGCGGCTGAAG
61.464
63.158
36.94
31.31
0.00
3.02
91
92
1.447838
CTAAAGGCGCGGCTGAAGA
60.448
57.895
36.94
19.47
0.00
2.87
92
93
0.811616
CTAAAGGCGCGGCTGAAGAT
60.812
55.000
36.94
17.72
0.00
2.40
93
94
1.089481
TAAAGGCGCGGCTGAAGATG
61.089
55.000
36.94
0.00
0.00
2.90
109
110
2.200081
AGATGCCCTAAGCTTTGGAGA
58.800
47.619
26.04
13.21
44.23
3.71
110
111
2.092699
AGATGCCCTAAGCTTTGGAGAC
60.093
50.000
26.04
15.67
44.23
3.36
167
168
2.138179
ATGGGATGGCAATGGCAGC
61.138
57.895
16.91
16.91
43.70
5.25
202
203
2.290641
CCCTCGTGTGGAAAGTTTGAAG
59.709
50.000
0.00
0.00
0.00
3.02
206
207
1.673920
GTGTGGAAAGTTTGAAGCGGA
59.326
47.619
0.00
0.00
0.00
5.54
208
209
1.947456
GTGGAAAGTTTGAAGCGGACT
59.053
47.619
0.00
0.00
0.00
3.85
210
211
3.751698
GTGGAAAGTTTGAAGCGGACTAT
59.248
43.478
0.00
0.00
0.00
2.12
215
216
3.589988
AGTTTGAAGCGGACTATCACAG
58.410
45.455
0.00
0.00
0.00
3.66
216
217
3.258372
AGTTTGAAGCGGACTATCACAGA
59.742
43.478
0.00
0.00
0.00
3.41
219
220
2.164422
TGAAGCGGACTATCACAGACAG
59.836
50.000
0.00
0.00
0.00
3.51
221
222
0.867753
GCGGACTATCACAGACAGCG
60.868
60.000
0.00
0.00
31.76
5.18
222
223
0.733150
CGGACTATCACAGACAGCGA
59.267
55.000
0.00
0.00
0.00
4.93
231
232
2.866156
TCACAGACAGCGAGAAAACTTG
59.134
45.455
0.00
0.00
0.00
3.16
244
246
1.187567
AAACTTGGCCATGGCTCCAC
61.188
55.000
34.70
19.38
41.60
4.02
290
292
2.890474
CGAAGGAATCCGCCACCG
60.890
66.667
0.00
0.00
0.00
4.94
332
334
0.109873
GTACTCACGAGTCACACCGG
60.110
60.000
0.00
0.00
42.54
5.28
350
352
2.179018
CCGGTTTTGATGCTGCCG
59.821
61.111
0.00
0.00
41.82
5.69
351
353
2.331893
CCGGTTTTGATGCTGCCGA
61.332
57.895
2.66
0.00
44.57
5.54
352
354
1.135315
CGGTTTTGATGCTGCCGAG
59.865
57.895
0.00
0.00
44.57
4.63
353
355
1.298157
CGGTTTTGATGCTGCCGAGA
61.298
55.000
0.00
0.00
44.57
4.04
354
356
0.449388
GGTTTTGATGCTGCCGAGAG
59.551
55.000
0.00
0.00
0.00
3.20
383
385
2.056223
CAGATGCCCCAAGCCCAAG
61.056
63.158
0.00
0.00
42.71
3.61
388
390
2.359975
CCCCAAGCCCAAGTCGTC
60.360
66.667
0.00
0.00
0.00
4.20
389
391
2.359975
CCCAAGCCCAAGTCGTCC
60.360
66.667
0.00
0.00
0.00
4.79
390
392
2.429930
CCAAGCCCAAGTCGTCCA
59.570
61.111
0.00
0.00
0.00
4.02
391
393
1.002134
CCAAGCCCAAGTCGTCCAT
60.002
57.895
0.00
0.00
0.00
3.41
392
394
0.251916
CCAAGCCCAAGTCGTCCATA
59.748
55.000
0.00
0.00
0.00
2.74
398
413
1.134788
CCCAAGTCGTCCATAGTGGTC
60.135
57.143
0.00
0.00
39.03
4.02
416
431
3.832171
GTCGACTCGCGCTGCTTG
61.832
66.667
8.70
0.00
40.61
4.01
417
432
4.342987
TCGACTCGCGCTGCTTGT
62.343
61.111
5.56
0.00
40.61
3.16
418
433
3.406361
CGACTCGCGCTGCTTGTT
61.406
61.111
5.56
0.00
0.00
2.83
420
435
2.280119
ACTCGCGCTGCTTGTTGA
60.280
55.556
5.56
0.00
0.00
3.18
421
436
1.831389
GACTCGCGCTGCTTGTTGAA
61.831
55.000
5.56
0.00
0.00
2.69
429
444
1.135859
GCTGCTTGTTGAACGGATGAG
60.136
52.381
0.00
0.00
0.00
2.90
461
476
4.527564
GGCGAGTTTTTATCGGATGATTG
58.472
43.478
0.00
0.00
40.50
2.67
497
512
8.303876
GCAAAGAAGGTAGATATGGAAAACAAA
58.696
33.333
0.00
0.00
0.00
2.83
503
518
8.848474
AGGTAGATATGGAAAACAAATATCGG
57.152
34.615
0.00
0.00
38.02
4.18
504
519
8.437575
AGGTAGATATGGAAAACAAATATCGGT
58.562
33.333
0.00
0.00
38.02
4.69
505
520
8.718734
GGTAGATATGGAAAACAAATATCGGTC
58.281
37.037
0.00
0.00
38.02
4.79
506
521
9.490379
GTAGATATGGAAAACAAATATCGGTCT
57.510
33.333
0.00
0.00
38.02
3.85
507
522
8.608844
AGATATGGAAAACAAATATCGGTCTC
57.391
34.615
0.00
0.00
38.02
3.36
508
523
8.210946
AGATATGGAAAACAAATATCGGTCTCA
58.789
33.333
0.00
0.00
38.02
3.27
565
591
1.315257
CCATTCCAAACCCGCAGAGG
61.315
60.000
0.00
0.00
40.63
3.69
574
600
3.733960
CCGCAGAGGTCGTCGACA
61.734
66.667
25.64
0.00
33.68
4.35
575
601
2.485582
CGCAGAGGTCGTCGACAT
59.514
61.111
25.64
20.08
33.68
3.06
576
602
1.712018
CCGCAGAGGTCGTCGACATA
61.712
60.000
25.64
0.00
33.68
2.29
577
603
0.589229
CGCAGAGGTCGTCGACATAC
60.589
60.000
25.64
15.56
33.68
2.39
583
609
0.317603
GGTCGTCGACATACATCCGG
60.318
60.000
25.64
0.00
33.68
5.14
602
628
0.660300
GCAAGGACAAAAAGGACGCG
60.660
55.000
3.53
3.53
0.00
6.01
618
644
2.506438
CGAAGGAGGCGTCGGAAC
60.506
66.667
0.00
0.00
33.62
3.62
620
646
3.660732
GAAGGAGGCGTCGGAACCC
62.661
68.421
0.00
0.00
0.00
4.11
623
649
3.782443
GAGGCGTCGGAACCCCAT
61.782
66.667
0.00
0.00
0.00
4.00
625
651
4.851179
GGCGTCGGAACCCCATCC
62.851
72.222
0.00
0.00
36.05
3.51
626
652
4.090588
GCGTCGGAACCCCATCCA
62.091
66.667
0.00
0.00
39.61
3.41
627
653
2.908015
CGTCGGAACCCCATCCAT
59.092
61.111
0.00
0.00
39.61
3.41
629
655
1.686325
CGTCGGAACCCCATCCATCT
61.686
60.000
0.00
0.00
39.61
2.90
630
656
0.106894
GTCGGAACCCCATCCATCTC
59.893
60.000
0.00
0.00
39.61
2.75
632
658
0.546122
CGGAACCCCATCCATCTCAA
59.454
55.000
0.00
0.00
39.61
3.02
665
734
3.231736
GCGGGAGGAGGCCGATAA
61.232
66.667
0.00
0.00
0.00
1.75
672
742
3.435169
GGGAGGAGGCCGATAAAAAGAAT
60.435
47.826
0.00
0.00
0.00
2.40
673
743
3.815962
GGAGGAGGCCGATAAAAAGAATC
59.184
47.826
0.00
0.00
0.00
2.52
676
746
5.261216
AGGAGGCCGATAAAAAGAATCAAA
58.739
37.500
0.00
0.00
0.00
2.69
692
779
7.346751
AGAATCAAATACAAATACGCCCATT
57.653
32.000
0.00
0.00
0.00
3.16
698
785
8.240682
TCAAATACAAATACGCCCATTATATGC
58.759
33.333
0.00
0.00
0.00
3.14
699
786
7.695480
AATACAAATACGCCCATTATATGCA
57.305
32.000
0.00
0.00
0.00
3.96
700
787
5.627499
ACAAATACGCCCATTATATGCAG
57.373
39.130
0.00
0.00
0.00
4.41
731
824
1.586154
GCACCAGGCGCATAGTTGTT
61.586
55.000
10.83
0.00
0.00
2.83
732
825
0.168788
CACCAGGCGCATAGTTGTTG
59.831
55.000
10.83
0.00
0.00
3.33
734
827
0.447801
CCAGGCGCATAGTTGTTGTC
59.552
55.000
10.83
0.00
0.00
3.18
735
828
0.447801
CAGGCGCATAGTTGTTGTCC
59.552
55.000
10.83
0.00
0.00
4.02
737
830
1.423845
GCGCATAGTTGTTGTCCCG
59.576
57.895
0.30
0.00
0.00
5.14
738
831
1.296056
GCGCATAGTTGTTGTCCCGT
61.296
55.000
0.30
0.00
0.00
5.28
741
834
2.538449
CGCATAGTTGTTGTCCCGTATC
59.462
50.000
0.00
0.00
0.00
2.24
743
836
3.680475
GCATAGTTGTTGTCCCGTATCCA
60.680
47.826
0.00
0.00
0.00
3.41
744
837
2.762535
AGTTGTTGTCCCGTATCCAG
57.237
50.000
0.00
0.00
0.00
3.86
745
838
1.084289
GTTGTTGTCCCGTATCCAGC
58.916
55.000
0.00
0.00
0.00
4.85
796
899
6.255887
GCTACCATCTCCGATAAATTATTCCG
59.744
42.308
0.00
0.00
0.00
4.30
893
999
6.728164
TCCCATAATTGTTTGATTTCCCTTCA
59.272
34.615
0.00
0.00
0.00
3.02
998
1118
4.567318
ATCTTGGCAAGATCGGCC
57.433
55.556
31.80
20.61
44.79
6.13
1095
1215
2.541120
GCTGTCCATGCTGATCGCC
61.541
63.158
7.00
0.00
38.05
5.54
1183
1303
2.274760
GGAGCTGCCAGGATTGCT
59.725
61.111
0.00
0.00
38.59
3.91
1184
1304
3.824810
GAGCTGCCAGGATTGCTC
58.175
61.111
11.39
11.39
43.75
4.26
1185
1305
1.823041
GAGCTGCCAGGATTGCTCC
60.823
63.158
14.38
0.00
44.16
4.70
1215
1335
2.202892
GACTTCCCGGGCGATGAC
60.203
66.667
18.49
2.03
0.00
3.06
1890
2010
0.678048
GGTTCCACCAGGTGAGCATC
60.678
60.000
22.37
6.44
38.42
3.91
1964
2088
0.723414
AATCGTCATGCTCGTTGCTG
59.277
50.000
9.23
2.07
43.37
4.41
1965
2089
1.699656
ATCGTCATGCTCGTTGCTGC
61.700
55.000
9.23
0.00
43.37
5.25
1966
2090
2.385875
CGTCATGCTCGTTGCTGCT
61.386
57.895
0.00
0.00
43.37
4.24
1989
2113
8.424918
TGCTATGTTTGAATCAAAACCCTTTTA
58.575
29.630
10.27
0.00
38.93
1.52
2004
2128
6.223351
ACCCTTTTAAAATCACGTTTTGGA
57.777
33.333
0.09
0.00
40.17
3.53
2131
2260
3.180507
TGGGCTGCCTATTCCAAATTTT
58.819
40.909
19.68
0.00
0.00
1.82
2137
2266
5.499139
TGCCTATTCCAAATTTTAGCTCG
57.501
39.130
0.00
0.00
0.00
5.03
2139
2268
4.261614
GCCTATTCCAAATTTTAGCTCGGG
60.262
45.833
0.00
0.00
0.00
5.14
2147
2286
1.541379
TTTTAGCTCGGGGCCTTTTC
58.459
50.000
0.84
0.00
43.05
2.29
2153
2292
0.392595
CTCGGGGCCTTTTCCACTAC
60.393
60.000
0.84
0.00
0.00
2.73
2154
2293
0.838987
TCGGGGCCTTTTCCACTACT
60.839
55.000
0.84
0.00
0.00
2.57
2155
2294
0.906775
CGGGGCCTTTTCCACTACTA
59.093
55.000
0.84
0.00
0.00
1.82
2156
2295
1.134491
CGGGGCCTTTTCCACTACTAG
60.134
57.143
0.84
0.00
0.00
2.57
2157
2296
1.212195
GGGGCCTTTTCCACTACTAGG
59.788
57.143
0.84
0.00
0.00
3.02
2158
2297
1.914108
GGGCCTTTTCCACTACTAGGT
59.086
52.381
0.84
0.00
0.00
3.08
2159
2298
2.307980
GGGCCTTTTCCACTACTAGGTT
59.692
50.000
0.84
0.00
0.00
3.50
2160
2299
3.245158
GGGCCTTTTCCACTACTAGGTTT
60.245
47.826
0.84
0.00
0.00
3.27
2161
2300
4.404640
GGCCTTTTCCACTACTAGGTTTT
58.595
43.478
0.00
0.00
0.00
2.43
2205
2344
7.428282
TCAAACCTTTTTGACCAACTTTTTC
57.572
32.000
0.00
0.00
45.08
2.29
2206
2345
6.992715
TCAAACCTTTTTGACCAACTTTTTCA
59.007
30.769
0.00
0.00
45.08
2.69
2208
2347
5.242434
ACCTTTTTGACCAACTTTTTCACC
58.758
37.500
0.00
0.00
0.00
4.02
2209
2348
4.328712
CCTTTTTGACCAACTTTTTCACCG
59.671
41.667
0.00
0.00
0.00
4.94
2210
2349
4.522722
TTTTGACCAACTTTTTCACCGT
57.477
36.364
0.00
0.00
0.00
4.83
2211
2350
3.495670
TTGACCAACTTTTTCACCGTG
57.504
42.857
0.00
0.00
0.00
4.94
2212
2351
2.438411
TGACCAACTTTTTCACCGTGT
58.562
42.857
0.00
0.00
0.00
4.49
2213
2352
2.420722
TGACCAACTTTTTCACCGTGTC
59.579
45.455
0.00
0.00
0.00
3.67
2215
2354
3.086282
ACCAACTTTTTCACCGTGTCTT
58.914
40.909
0.00
0.00
0.00
3.01
2226
2365
0.676466
CCGTGTCTTGCCTATGCCAA
60.676
55.000
0.00
0.00
36.33
4.52
2227
2366
1.164411
CGTGTCTTGCCTATGCCAAA
58.836
50.000
0.00
0.00
36.33
3.28
2228
2367
1.539388
CGTGTCTTGCCTATGCCAAAA
59.461
47.619
0.00
0.00
36.33
2.44
2229
2368
2.668279
CGTGTCTTGCCTATGCCAAAAC
60.668
50.000
0.00
0.00
36.33
2.43
2234
2373
3.386078
TCTTGCCTATGCCAAAACAAACA
59.614
39.130
0.00
0.00
36.33
2.83
2242
2381
6.259608
CCTATGCCAAAACAAACAAAACATGA
59.740
34.615
0.00
0.00
0.00
3.07
2243
2382
5.542616
TGCCAAAACAAACAAAACATGAG
57.457
34.783
0.00
0.00
0.00
2.90
2338
2477
1.507141
CCCAAAGACGAACGCTTGCT
61.507
55.000
0.00
0.00
0.00
3.91
2345
2484
4.135493
GAACGCTTGCTCGACGGC
62.135
66.667
0.00
0.00
0.00
5.68
2404
2555
1.501741
CGGAAGGCACGGACAATTG
59.498
57.895
3.24
3.24
0.00
2.32
2575
2746
1.075896
GAACCACCACCCCAACCAA
60.076
57.895
0.00
0.00
0.00
3.67
2576
2747
0.471022
GAACCACCACCCCAACCAAT
60.471
55.000
0.00
0.00
0.00
3.16
2577
2748
0.030603
AACCACCACCCCAACCAATT
60.031
50.000
0.00
0.00
0.00
2.32
2578
2749
0.030603
ACCACCACCCCAACCAATTT
60.031
50.000
0.00
0.00
0.00
1.82
2579
2750
0.684535
CCACCACCCCAACCAATTTC
59.315
55.000
0.00
0.00
0.00
2.17
2580
2751
0.316841
CACCACCCCAACCAATTTCG
59.683
55.000
0.00
0.00
0.00
3.46
2648
2823
2.673368
CACCACCTTTTCATACTCGCTC
59.327
50.000
0.00
0.00
0.00
5.03
2704
2883
1.067706
TGTGGCCGAAAGATGCAAATG
60.068
47.619
0.00
0.00
0.00
2.32
2705
2884
1.202114
GTGGCCGAAAGATGCAAATGA
59.798
47.619
0.00
0.00
0.00
2.57
2721
4475
4.070716
CAAATGATGATGAGTAGAGGGGC
58.929
47.826
0.00
0.00
0.00
5.80
2838
4597
0.462047
CAGGGTACGTGGATGGCTTC
60.462
60.000
0.00
0.00
40.97
3.86
2922
4694
2.279851
GCGGGTTTTGGGTTGCAC
60.280
61.111
0.00
0.00
0.00
4.57
2983
4778
1.896660
CACCACCACCGTTTCTGGG
60.897
63.158
0.00
0.00
32.45
4.45
3115
4923
1.207593
GTGGCAGTGTCACGAATGC
59.792
57.895
12.91
7.06
37.95
3.56
3118
4926
1.207593
GCAGTGTCACGAATGCACC
59.792
57.895
10.03
0.00
38.54
5.01
3120
4928
0.514255
CAGTGTCACGAATGCACCAG
59.486
55.000
0.00
0.00
35.00
4.00
3178
5090
1.370900
CGCTGAGCAAACTTGTGGC
60.371
57.895
4.88
0.00
0.00
5.01
3242
5164
0.806868
ACGGACGATTAACTGCGAGA
59.193
50.000
0.00
0.00
0.00
4.04
3320
5249
2.336809
GCGCTCCCAGATCTACCG
59.663
66.667
0.00
0.00
0.00
4.02
3428
5357
1.527034
CATGCCCACGGGAATCTATG
58.473
55.000
6.21
0.00
37.50
2.23
3430
5359
1.600916
GCCCACGGGAATCTATGGC
60.601
63.158
6.21
0.00
37.50
4.40
3447
5376
1.011968
GGCCGCCCGTTTCAAATTTC
61.012
55.000
0.00
0.00
0.00
2.17
3496
5425
7.840342
AGAAAATTACTGTATGAGCACTCAG
57.160
36.000
6.50
0.00
43.61
3.35
3722
5665
1.135803
CCCAATGGTTAGCACGAAACG
60.136
52.381
0.00
0.00
0.00
3.60
3766
5710
8.578151
AGGAACGTATTTAAAAGGCAAACATTA
58.422
29.630
0.00
0.00
0.00
1.90
3798
5742
2.731217
AGCACATTTCTGAAAACGTGC
58.269
42.857
32.30
32.30
46.11
5.34
4244
6221
7.279758
TGAACCAAAATTGAAAACAGGAACATC
59.720
33.333
0.00
0.00
0.00
3.06
4729
6846
6.425577
TCCAATAGGAATTTCCGTTTAACG
57.574
37.500
10.83
10.83
42.75
3.18
4730
6847
5.032220
CCAATAGGAATTTCCGTTTAACGC
58.968
41.667
12.41
0.00
42.75
4.84
4731
6848
2.886587
AGGAATTTCCGTTTAACGCG
57.113
45.000
12.41
3.53
42.75
6.01
4732
6849
2.415776
AGGAATTTCCGTTTAACGCGA
58.584
42.857
15.93
8.15
42.75
5.87
4733
6850
2.158254
AGGAATTTCCGTTTAACGCGAC
59.842
45.455
15.93
0.00
42.75
5.19
4734
6851
2.152693
GAATTTCCGTTTAACGCGACG
58.847
47.619
15.93
12.75
40.91
5.12
4735
6852
0.179243
ATTTCCGTTTAACGCGACGC
60.179
50.000
15.93
10.49
40.91
5.19
4736
6853
1.214373
TTTCCGTTTAACGCGACGCT
61.214
50.000
15.93
2.07
40.91
5.07
4737
6854
1.214373
TTCCGTTTAACGCGACGCTT
61.214
50.000
15.93
13.20
40.91
4.68
4738
6855
1.202320
CCGTTTAACGCGACGCTTT
59.798
52.632
15.93
17.47
40.91
3.51
4739
6856
0.383368
CCGTTTAACGCGACGCTTTT
60.383
50.000
17.05
12.26
40.91
2.27
4740
6857
0.688023
CGTTTAACGCGACGCTTTTG
59.312
50.000
17.05
3.80
33.65
2.44
4968
7085
1.654954
CTACACCTGGTCCGTCTCCG
61.655
65.000
0.00
0.00
0.00
4.63
5096
7213
3.656045
GTGTTCAACACCCGGCCG
61.656
66.667
21.04
21.04
43.05
6.13
5097
7214
4.178169
TGTTCAACACCCGGCCGT
62.178
61.111
26.12
2.55
0.00
5.68
5100
7217
4.939368
TCAACACCCGGCCGTTGG
62.939
66.667
26.12
21.57
42.22
3.77
5150
7267
1.372087
CCATGTTCTTCCTCAGCCGC
61.372
60.000
0.00
0.00
0.00
6.53
5201
7318
3.188965
GAGTACTCGAGGCACGCT
58.811
61.111
18.41
6.77
42.26
5.07
5290
7407
0.984230
TTCGCTCCCAAGATGAACCT
59.016
50.000
0.00
0.00
0.00
3.50
5291
7408
0.537188
TCGCTCCCAAGATGAACCTC
59.463
55.000
0.00
0.00
0.00
3.85
5311
7428
1.528161
CAACGAGTGGAAACGGGTAAC
59.472
52.381
0.00
0.00
0.00
2.50
5346
7464
5.370679
AGCTCATTGTTTTCATGGCTTTTT
58.629
33.333
0.00
0.00
0.00
1.94
5374
7492
1.079197
ATGCGCATCTCCGTGTTGA
60.079
52.632
19.28
0.00
0.00
3.18
5380
7498
2.285026
CGCATCTCCGTGTTGATTTACG
60.285
50.000
0.00
0.00
39.83
3.18
5502
7620
4.459089
GGAGAGCTCACCACGCCC
62.459
72.222
23.63
5.67
0.00
6.13
5577
7698
6.998802
AGAGTAGGATGTTGATATTGGTAGC
58.001
40.000
0.00
0.00
0.00
3.58
5579
7700
4.955811
AGGATGTTGATATTGGTAGCGA
57.044
40.909
0.00
0.00
0.00
4.93
5620
7741
3.627237
GCAAAGGTGAATAATCCCCTCCA
60.627
47.826
0.00
0.00
0.00
3.86
5669
7790
1.493022
TCCCAAACCAGCAGTACTTGT
59.507
47.619
0.00
0.00
0.00
3.16
5683
7804
6.205464
AGCAGTACTTGTTAACACGTAGACTA
59.795
38.462
21.43
3.33
32.36
2.59
5715
7836
1.166531
GGTGCTGGGCAATATCGTCC
61.167
60.000
0.00
0.00
41.47
4.79
5741
7862
4.282957
AGTGTGTCCAGATGGCTATATGAG
59.717
45.833
6.22
0.00
34.44
2.90
5748
7869
4.807834
CCAGATGGCTATATGAGTTATGCG
59.192
45.833
6.22
0.00
0.00
4.73
5749
7870
5.394553
CCAGATGGCTATATGAGTTATGCGA
60.395
44.000
6.22
0.00
0.00
5.10
5750
7871
5.518128
CAGATGGCTATATGAGTTATGCGAC
59.482
44.000
0.00
0.00
0.00
5.19
5751
7872
4.864704
TGGCTATATGAGTTATGCGACA
57.135
40.909
0.00
0.00
0.00
4.35
5752
7873
4.809673
TGGCTATATGAGTTATGCGACAG
58.190
43.478
0.00
0.00
0.00
3.51
5753
7874
4.522789
TGGCTATATGAGTTATGCGACAGA
59.477
41.667
0.00
0.00
0.00
3.41
5754
7875
4.859798
GGCTATATGAGTTATGCGACAGAC
59.140
45.833
0.00
0.00
0.00
3.51
5755
7876
5.461526
GCTATATGAGTTATGCGACAGACA
58.538
41.667
0.00
0.00
0.00
3.41
5863
7985
4.563786
CCTCTTTCTTGGTTCTCTGGTACC
60.564
50.000
4.43
4.43
34.11
3.34
5880
8002
2.579207
ACCGATGTGATTCTACCGTG
57.421
50.000
0.00
0.00
0.00
4.94
5885
8007
3.677700
CGATGTGATTCTACCGTGGGAAA
60.678
47.826
0.00
0.00
0.00
3.13
5896
8018
1.336795
CCGTGGGAAAATGGCTGTTTC
60.337
52.381
5.28
5.28
34.79
2.78
5957
8079
3.581332
AGGGACGTGTATTTTTCTGGAGA
59.419
43.478
0.00
0.00
0.00
3.71
5989
8111
1.975407
GCTTGTGCTCCATGGTGCT
60.975
57.895
32.44
0.00
35.85
4.40
5993
8115
2.042831
GTGCTCCATGGTGCTGGAC
61.043
63.158
32.44
21.68
40.43
4.02
6040
8170
0.976073
GGGACCCTGAGACCGAATGA
60.976
60.000
2.09
0.00
0.00
2.57
6056
8186
4.746836
GAATGAGTCGATCGAACTGAAC
57.253
45.455
21.31
6.84
0.00
3.18
6057
8187
3.850122
ATGAGTCGATCGAACTGAACA
57.150
42.857
21.31
13.14
0.00
3.18
6058
8188
3.850122
TGAGTCGATCGAACTGAACAT
57.150
42.857
21.31
0.00
0.00
2.71
6059
8189
4.174411
TGAGTCGATCGAACTGAACATT
57.826
40.909
21.31
0.00
0.00
2.71
6060
8190
4.556233
TGAGTCGATCGAACTGAACATTT
58.444
39.130
21.31
0.00
0.00
2.32
6061
8191
4.988540
TGAGTCGATCGAACTGAACATTTT
59.011
37.500
21.31
0.00
0.00
1.82
6062
8192
5.118664
TGAGTCGATCGAACTGAACATTTTC
59.881
40.000
21.31
2.21
0.00
2.29
6063
8193
4.090066
AGTCGATCGAACTGAACATTTTCG
59.910
41.667
21.31
10.44
42.75
3.46
6064
8194
3.985279
TCGATCGAACTGAACATTTTCGT
59.015
39.130
16.99
6.27
42.17
3.85
6065
8195
4.089493
TCGATCGAACTGAACATTTTCGTC
59.911
41.667
16.99
11.19
42.17
4.20
6066
8196
4.638963
GATCGAACTGAACATTTTCGTCC
58.361
43.478
14.04
7.40
42.17
4.79
6067
8197
2.473609
TCGAACTGAACATTTTCGTCCG
59.526
45.455
14.04
0.00
42.17
4.79
6068
8198
2.411031
CGAACTGAACATTTTCGTCCGG
60.411
50.000
0.00
0.00
37.84
5.14
6069
8199
2.249844
ACTGAACATTTTCGTCCGGT
57.750
45.000
0.00
0.00
34.04
5.28
6070
8200
3.389925
ACTGAACATTTTCGTCCGGTA
57.610
42.857
0.00
0.00
34.04
4.02
6071
8201
3.062042
ACTGAACATTTTCGTCCGGTAC
58.938
45.455
0.00
0.00
34.04
3.34
6084
8214
3.166394
GGTACGATCCCCACCCCC
61.166
72.222
0.00
0.00
0.00
5.40
6085
8215
3.543641
GTACGATCCCCACCCCCG
61.544
72.222
0.00
0.00
0.00
5.73
6100
8230
4.394712
CCGCGCTCCTGAACCCTT
62.395
66.667
5.56
0.00
0.00
3.95
6101
8231
3.121030
CGCGCTCCTGAACCCTTG
61.121
66.667
5.56
0.00
0.00
3.61
6102
8232
3.435186
GCGCTCCTGAACCCTTGC
61.435
66.667
0.00
0.00
0.00
4.01
6103
8233
2.348998
CGCTCCTGAACCCTTGCT
59.651
61.111
0.00
0.00
0.00
3.91
6104
8234
1.596934
CGCTCCTGAACCCTTGCTA
59.403
57.895
0.00
0.00
0.00
3.49
6121
8626
1.790623
GCTAACGAAACGTCTCTTGCA
59.209
47.619
0.00
0.00
39.99
4.08
6122
8627
2.409879
GCTAACGAAACGTCTCTTGCAC
60.410
50.000
0.00
0.00
39.99
4.57
6139
8644
4.592485
TGCACGAACAAAATAAATGGGT
57.408
36.364
0.00
0.00
0.00
4.51
6182
8687
4.790765
AAAAAGAACAAGATAGCCAGCC
57.209
40.909
0.00
0.00
0.00
4.85
6220
8726
2.704725
AGCCATTGCGTACAAAACAG
57.295
45.000
0.00
0.00
44.33
3.16
6227
8733
0.879090
GCGTACAAAACAGAAGGGGG
59.121
55.000
0.00
0.00
0.00
5.40
6366
8873
8.065473
TGCCATAATTTTGTACAACAGATGAT
57.935
30.769
8.07
0.00
0.00
2.45
6367
8874
8.530311
TGCCATAATTTTGTACAACAGATGATT
58.470
29.630
8.07
5.09
0.00
2.57
6393
8900
7.810766
TTTCTCAAAAATATTGCCAATCGAC
57.189
32.000
0.00
0.00
0.00
4.20
6399
8906
8.181573
TCAAAAATATTGCCAATCGACTAGAAC
58.818
33.333
0.00
0.00
0.00
3.01
6401
8908
7.624360
AAATATTGCCAATCGACTAGAACAA
57.376
32.000
0.00
0.00
0.00
2.83
6402
8909
7.807977
AATATTGCCAATCGACTAGAACAAT
57.192
32.000
0.00
0.00
0.00
2.71
6404
8911
8.902540
ATATTGCCAATCGACTAGAACAATTA
57.097
30.769
0.00
0.00
0.00
1.40
6504
9011
9.911138
AAAACATGGAAAAATAAATTGCATTCC
57.089
25.926
4.79
4.79
36.81
3.01
6505
9012
7.628769
ACATGGAAAAATAAATTGCATTCCC
57.371
32.000
8.57
0.00
36.81
3.97
Position
MSA Position
Penalty
Sequence
TM
GC
Self any TH
Self end TH
Hairpin
End Stability
4
5
2.126031
GTCGCGTCTCCAGGAACC
60.126
66.667
5.77
0.00
0.00
3.62
5
6
1.444553
CAGTCGCGTCTCCAGGAAC
60.445
63.158
5.77
0.00
0.00
3.62
6
7
2.636412
CCAGTCGCGTCTCCAGGAA
61.636
63.158
5.77
0.00
0.00
3.36
7
8
3.062466
CCAGTCGCGTCTCCAGGA
61.062
66.667
5.77
0.00
0.00
3.86
8
9
4.135153
CCCAGTCGCGTCTCCAGG
62.135
72.222
5.77
3.44
0.00
4.45
9
10
4.803426
GCCCAGTCGCGTCTCCAG
62.803
72.222
5.77
0.00
0.00
3.86
15
16
4.922026
AAAACGGCCCAGTCGCGT
62.922
61.111
5.77
0.00
32.11
6.01
16
17
3.656045
AAAAACGGCCCAGTCGCG
61.656
61.111
0.00
0.00
32.11
5.87
31
32
2.795175
TTTTATGCCGGCGTCAAAAA
57.205
40.000
27.77
23.25
0.00
1.94
32
33
2.795175
TTTTTATGCCGGCGTCAAAA
57.205
40.000
28.47
28.47
0.00
2.44
50
51
4.998033
GGAAGACCTTCTCAGACGATTTTT
59.002
41.667
9.35
0.00
39.45
1.94
51
52
4.284746
AGGAAGACCTTCTCAGACGATTTT
59.715
41.667
9.35
0.00
45.36
1.82
52
53
3.835395
AGGAAGACCTTCTCAGACGATTT
59.165
43.478
9.35
0.00
45.36
2.17
53
54
3.436243
AGGAAGACCTTCTCAGACGATT
58.564
45.455
9.35
0.00
45.36
3.34
54
55
3.094484
AGGAAGACCTTCTCAGACGAT
57.906
47.619
9.35
0.00
45.36
3.73
55
56
2.588464
AGGAAGACCTTCTCAGACGA
57.412
50.000
9.35
0.00
45.36
4.20
56
57
4.381079
CCTTTAGGAAGACCTTCTCAGACG
60.381
50.000
9.35
0.00
45.36
4.18
57
58
4.621983
GCCTTTAGGAAGACCTTCTCAGAC
60.622
50.000
9.35
0.00
45.36
3.51
58
59
3.515901
GCCTTTAGGAAGACCTTCTCAGA
59.484
47.826
9.35
0.00
45.36
3.27
59
60
3.677424
CGCCTTTAGGAAGACCTTCTCAG
60.677
52.174
9.35
1.93
45.36
3.35
60
61
2.233922
CGCCTTTAGGAAGACCTTCTCA
59.766
50.000
9.35
0.00
45.36
3.27
61
62
2.894902
CGCCTTTAGGAAGACCTTCTC
58.105
52.381
9.35
1.09
45.36
2.87
62
63
1.066071
GCGCCTTTAGGAAGACCTTCT
60.066
52.381
0.00
0.00
45.36
2.85
63
64
1.370609
GCGCCTTTAGGAAGACCTTC
58.629
55.000
0.00
1.27
45.36
3.46
64
65
0.391263
CGCGCCTTTAGGAAGACCTT
60.391
55.000
0.00
0.00
45.36
3.50
66
67
1.814169
CCGCGCCTTTAGGAAGACC
60.814
63.158
0.00
0.00
37.39
3.85
67
68
2.461945
GCCGCGCCTTTAGGAAGAC
61.462
63.158
0.00
0.00
37.39
3.01
68
69
2.125269
GCCGCGCCTTTAGGAAGA
60.125
61.111
0.00
0.00
37.39
2.87
69
70
2.125106
AGCCGCGCCTTTAGGAAG
60.125
61.111
0.00
0.00
37.39
3.46
70
71
2.435938
CAGCCGCGCCTTTAGGAA
60.436
61.111
0.00
0.00
37.39
3.36
71
72
2.852495
CTTCAGCCGCGCCTTTAGGA
62.852
60.000
0.00
0.00
37.39
2.94
72
73
2.435938
TTCAGCCGCGCCTTTAGG
60.436
61.111
0.00
0.00
38.53
2.69
73
74
0.811616
ATCTTCAGCCGCGCCTTTAG
60.812
55.000
0.00
0.00
0.00
1.85
74
75
1.089481
CATCTTCAGCCGCGCCTTTA
61.089
55.000
0.00
0.00
0.00
1.85
75
76
2.045926
ATCTTCAGCCGCGCCTTT
60.046
55.556
0.00
0.00
0.00
3.11
76
77
2.821366
CATCTTCAGCCGCGCCTT
60.821
61.111
0.00
0.00
0.00
4.35
84
85
2.049888
AAGCTTAGGGCATCTTCAGC
57.950
50.000
0.00
0.00
44.79
4.26
85
86
2.686915
CCAAAGCTTAGGGCATCTTCAG
59.313
50.000
0.00
0.00
44.79
3.02
86
87
2.308570
TCCAAAGCTTAGGGCATCTTCA
59.691
45.455
11.33
0.00
44.79
3.02
87
88
2.948315
CTCCAAAGCTTAGGGCATCTTC
59.052
50.000
11.33
0.00
44.79
2.87
88
89
2.578021
TCTCCAAAGCTTAGGGCATCTT
59.422
45.455
11.33
0.00
44.79
2.40
89
90
2.092699
GTCTCCAAAGCTTAGGGCATCT
60.093
50.000
11.33
0.00
44.79
2.90
90
91
2.293170
GTCTCCAAAGCTTAGGGCATC
58.707
52.381
11.33
2.29
44.79
3.91
91
92
1.407437
CGTCTCCAAAGCTTAGGGCAT
60.407
52.381
11.33
0.00
44.79
4.40
92
93
0.036388
CGTCTCCAAAGCTTAGGGCA
60.036
55.000
11.33
0.00
44.79
5.36
93
94
1.369839
GCGTCTCCAAAGCTTAGGGC
61.370
60.000
11.33
4.60
42.19
5.19
94
95
0.744771
GGCGTCTCCAAAGCTTAGGG
60.745
60.000
0.00
4.91
32.38
3.53
95
96
0.250513
AGGCGTCTCCAAAGCTTAGG
59.749
55.000
0.00
0.00
37.29
2.69
96
97
1.646189
GAGGCGTCTCCAAAGCTTAG
58.354
55.000
5.50
0.00
37.29
2.18
185
186
1.596954
CCGCTTCAAACTTTCCACACG
60.597
52.381
0.00
0.00
0.00
4.49
202
203
0.867753
CGCTGTCTGTGATAGTCCGC
60.868
60.000
0.00
0.00
0.00
5.54
206
207
4.021894
AGTTTTCTCGCTGTCTGTGATAGT
60.022
41.667
0.00
0.00
34.35
2.12
208
209
4.521130
AGTTTTCTCGCTGTCTGTGATA
57.479
40.909
0.00
0.00
34.35
2.15
210
211
2.866156
CAAGTTTTCTCGCTGTCTGTGA
59.134
45.455
0.00
0.00
0.00
3.58
215
216
0.238553
GGCCAAGTTTTCTCGCTGTC
59.761
55.000
0.00
0.00
0.00
3.51
216
217
0.465460
TGGCCAAGTTTTCTCGCTGT
60.465
50.000
0.61
0.00
0.00
4.40
219
220
0.109132
CCATGGCCAAGTTTTCTCGC
60.109
55.000
10.96
0.00
0.00
5.03
221
222
1.203287
GAGCCATGGCCAAGTTTTCTC
59.797
52.381
33.14
16.58
43.17
2.87
222
223
1.260544
GAGCCATGGCCAAGTTTTCT
58.739
50.000
33.14
11.40
43.17
2.52
254
256
2.591429
CGCCGGGCAATCATAGCA
60.591
61.111
20.71
0.00
0.00
3.49
281
283
4.373116
GAGCAGTTCGGTGGCGGA
62.373
66.667
0.00
0.00
0.00
5.54
290
292
2.375766
CGTCGTGGCAGAGCAGTTC
61.376
63.158
0.00
0.00
0.00
3.01
332
334
2.125952
GGCAGCATCAAAACCGGC
60.126
61.111
0.00
0.00
0.00
6.13
336
338
0.449388
CCTCTCGGCAGCATCAAAAC
59.551
55.000
0.00
0.00
0.00
2.43
350
352
2.891112
CATCTGCTGTGTTCTCCTCTC
58.109
52.381
0.00
0.00
0.00
3.20
351
353
1.066286
GCATCTGCTGTGTTCTCCTCT
60.066
52.381
0.00
0.00
38.21
3.69
352
354
1.367659
GCATCTGCTGTGTTCTCCTC
58.632
55.000
0.00
0.00
38.21
3.71
353
355
0.035630
GGCATCTGCTGTGTTCTCCT
60.036
55.000
1.70
0.00
41.70
3.69
354
356
1.028868
GGGCATCTGCTGTGTTCTCC
61.029
60.000
1.70
0.00
41.70
3.71
388
390
0.027716
CGAGTCGACGACCACTATGG
59.972
60.000
23.76
3.20
45.02
2.74
389
391
0.589229
GCGAGTCGACGACCACTATG
60.589
60.000
23.76
8.97
32.18
2.23
390
392
1.720301
GCGAGTCGACGACCACTAT
59.280
57.895
23.76
5.33
32.18
2.12
391
393
2.733671
CGCGAGTCGACGACCACTA
61.734
63.158
23.76
0.00
41.67
2.74
392
394
4.086178
CGCGAGTCGACGACCACT
62.086
66.667
23.76
6.13
41.67
4.00
416
431
2.178912
TGAACCCTCATCCGTTCAAC
57.821
50.000
0.36
0.00
43.97
3.18
418
433
0.037697
CGTGAACCCTCATCCGTTCA
60.038
55.000
0.00
0.00
44.55
3.18
420
435
1.375523
GCGTGAACCCTCATCCGTT
60.376
57.895
0.00
0.00
33.05
4.44
421
436
2.264794
GCGTGAACCCTCATCCGT
59.735
61.111
0.00
0.00
33.05
4.69
445
460
7.201866
CCATGTTACCCAATCATCCGATAAAAA
60.202
37.037
0.00
0.00
0.00
1.94
461
476
2.525368
ACCTTCTTTGCCATGTTACCC
58.475
47.619
0.00
0.00
0.00
3.69
497
512
1.607628
GTACGTGGCTGAGACCGATAT
59.392
52.381
0.00
0.00
0.00
1.63
498
513
1.019673
GTACGTGGCTGAGACCGATA
58.980
55.000
0.00
0.00
0.00
2.92
499
514
1.664321
GGTACGTGGCTGAGACCGAT
61.664
60.000
0.00
0.00
0.00
4.18
500
515
2.338015
GGTACGTGGCTGAGACCGA
61.338
63.158
0.00
0.00
0.00
4.69
501
516
2.181021
GGTACGTGGCTGAGACCG
59.819
66.667
0.00
0.00
0.00
4.79
503
518
1.446272
GCTGGTACGTGGCTGAGAC
60.446
63.158
0.00
0.00
0.00
3.36
504
519
2.646175
GGCTGGTACGTGGCTGAGA
61.646
63.158
0.00
0.00
0.00
3.27
505
520
1.320344
TAGGCTGGTACGTGGCTGAG
61.320
60.000
18.43
0.23
40.01
3.35
506
521
0.901114
TTAGGCTGGTACGTGGCTGA
60.901
55.000
18.43
10.58
40.01
4.26
507
522
0.178068
ATTAGGCTGGTACGTGGCTG
59.822
55.000
18.43
0.00
40.01
4.85
508
523
1.411612
GTATTAGGCTGGTACGTGGCT
59.588
52.381
15.01
15.01
42.03
4.75
548
574
0.322546
GACCTCTGCGGGTTTGGAAT
60.323
55.000
0.00
0.00
40.06
3.01
565
591
0.933509
GCCGGATGTATGTCGACGAC
60.934
60.000
20.97
20.97
0.00
4.34
574
600
2.799126
TTTGTCCTTGCCGGATGTAT
57.201
45.000
5.05
0.00
45.44
2.29
575
601
2.570415
TTTTGTCCTTGCCGGATGTA
57.430
45.000
5.05
0.00
45.44
2.29
576
602
1.613437
CTTTTTGTCCTTGCCGGATGT
59.387
47.619
5.05
0.00
45.44
3.06
577
603
1.067635
CCTTTTTGTCCTTGCCGGATG
60.068
52.381
5.05
0.00
45.44
3.51
583
609
0.660300
CGCGTCCTTTTTGTCCTTGC
60.660
55.000
0.00
0.00
0.00
4.01
602
628
2.125633
GGTTCCGACGCCTCCTTC
60.126
66.667
0.00
0.00
0.00
3.46
618
644
0.820891
CGCCTTTGAGATGGATGGGG
60.821
60.000
0.00
0.00
0.00
4.96
620
646
1.139654
TCTCGCCTTTGAGATGGATGG
59.860
52.381
0.00
0.00
40.01
3.51
623
649
0.176680
GCTCTCGCCTTTGAGATGGA
59.823
55.000
0.00
0.00
43.69
3.41
625
651
1.150567
CCGCTCTCGCCTTTGAGATG
61.151
60.000
0.00
0.00
43.69
2.90
626
652
1.142748
CCGCTCTCGCCTTTGAGAT
59.857
57.895
0.00
0.00
43.69
2.75
627
653
2.573869
CCGCTCTCGCCTTTGAGA
59.426
61.111
0.00
0.00
42.56
3.27
629
655
4.760047
GGCCGCTCTCGCCTTTGA
62.760
66.667
0.00
0.00
0.00
2.69
665
734
7.607250
TGGGCGTATTTGTATTTGATTCTTTT
58.393
30.769
0.00
0.00
0.00
2.27
672
742
8.240682
GCATATAATGGGCGTATTTGTATTTGA
58.759
33.333
0.00
0.00
0.00
2.69
673
743
8.026026
TGCATATAATGGGCGTATTTGTATTTG
58.974
33.333
0.00
0.00
0.00
2.32
676
746
7.109501
TCTGCATATAATGGGCGTATTTGTAT
58.890
34.615
0.00
0.00
0.00
2.29
692
779
4.096532
GTGCCTACGCTATCTCTGCATATA
59.903
45.833
0.00
0.00
35.36
0.86
698
785
1.000827
CTGGTGCCTACGCTATCTCTG
60.001
57.143
0.00
0.00
35.36
3.35
699
786
1.323412
CTGGTGCCTACGCTATCTCT
58.677
55.000
0.00
0.00
35.36
3.10
700
787
0.315568
CCTGGTGCCTACGCTATCTC
59.684
60.000
0.00
0.00
35.36
2.75
731
824
4.201679
CGCGCTGGATACGGGACA
62.202
66.667
5.56
0.00
45.25
4.02
756
849
1.402325
GGTAGCAACCGGAATTTGTGC
60.402
52.381
9.46
7.67
35.62
4.57
767
864
3.746045
TTATCGGAGATGGTAGCAACC
57.254
47.619
0.00
2.49
45.12
3.77
768
865
7.907214
ATAATTTATCGGAGATGGTAGCAAC
57.093
36.000
0.00
0.00
45.12
4.17
863
966
7.416777
GGGAAATCAAACAATTATGGGAGAGAC
60.417
40.741
0.00
0.00
0.00
3.36
1104
1224
3.753070
GACGTAGGCGAGGAAGGCG
62.753
68.421
0.00
0.00
42.00
5.52
1964
2088
7.728847
AAAAGGGTTTTGATTCAAACATAGC
57.271
32.000
11.30
7.06
32.79
2.97
2131
2260
1.921346
TGGAAAAGGCCCCGAGCTA
60.921
57.895
0.00
0.00
43.05
3.32
2137
2266
1.212195
CCTAGTAGTGGAAAAGGCCCC
59.788
57.143
0.00
0.00
0.00
5.80
2139
2268
3.715638
AACCTAGTAGTGGAAAAGGCC
57.284
47.619
0.00
0.00
0.00
5.19
2147
2286
5.817816
CCTATGCAGAAAAACCTAGTAGTGG
59.182
44.000
0.00
0.00
0.00
4.00
2153
2292
2.614057
CGGCCTATGCAGAAAAACCTAG
59.386
50.000
0.00
0.00
40.13
3.02
2154
2293
2.639065
CGGCCTATGCAGAAAAACCTA
58.361
47.619
0.00
0.00
40.13
3.08
2155
2294
1.463674
CGGCCTATGCAGAAAAACCT
58.536
50.000
0.00
0.00
40.13
3.50
2156
2295
0.179137
GCGGCCTATGCAGAAAAACC
60.179
55.000
0.00
0.00
40.13
3.27
2157
2296
0.811281
AGCGGCCTATGCAGAAAAAC
59.189
50.000
0.00
0.00
40.13
2.43
2158
2297
0.810648
CAGCGGCCTATGCAGAAAAA
59.189
50.000
0.00
0.00
40.13
1.94
2159
2298
1.031571
CCAGCGGCCTATGCAGAAAA
61.032
55.000
0.00
0.00
40.13
2.29
2160
2299
1.451927
CCAGCGGCCTATGCAGAAA
60.452
57.895
0.00
0.00
40.13
2.52
2161
2300
1.909459
TTCCAGCGGCCTATGCAGAA
61.909
55.000
0.00
1.88
40.13
3.02
2204
2343
0.391130
GCATAGGCAAGACACGGTGA
60.391
55.000
16.29
0.00
40.72
4.02
2205
2344
1.369091
GGCATAGGCAAGACACGGTG
61.369
60.000
6.58
6.58
43.71
4.94
2206
2345
1.078426
GGCATAGGCAAGACACGGT
60.078
57.895
0.15
0.00
43.71
4.83
2208
2347
2.853159
TTGGCATAGGCAAGACACG
58.147
52.632
0.15
0.00
42.98
4.49
2215
2354
3.827008
TTGTTTGTTTTGGCATAGGCA
57.173
38.095
0.15
0.00
43.71
4.75
2226
2365
5.964758
TCTGCTCTCATGTTTTGTTTGTTT
58.035
33.333
0.00
0.00
0.00
2.83
2227
2366
5.581126
TCTGCTCTCATGTTTTGTTTGTT
57.419
34.783
0.00
0.00
0.00
2.83
2228
2367
5.357878
TCTTCTGCTCTCATGTTTTGTTTGT
59.642
36.000
0.00
0.00
0.00
2.83
2229
2368
5.824429
TCTTCTGCTCTCATGTTTTGTTTG
58.176
37.500
0.00
0.00
0.00
2.93
2234
2373
5.045724
AGGAGATCTTCTGCTCTCATGTTTT
60.046
40.000
1.52
0.00
41.57
2.43
2242
2381
6.183360
CCAAAAGATAGGAGATCTTCTGCTCT
60.183
42.308
14.31
12.16
41.57
4.09
2243
2382
5.990996
CCAAAAGATAGGAGATCTTCTGCTC
59.009
44.000
14.31
10.12
41.57
4.26
2320
2459
0.110644
GAGCAAGCGTTCGTCTTTGG
60.111
55.000
0.00
0.00
0.00
3.28
2338
2477
1.832719
TTCCATGAAAGGGCCGTCGA
61.833
55.000
0.00
0.00
37.98
4.20
2345
2484
5.667466
CTTCCATTGATTTCCATGAAAGGG
58.333
41.667
0.00
0.00
40.85
3.95
2392
2543
1.467342
GTACCTTCCAATTGTCCGTGC
59.533
52.381
4.43
0.00
0.00
5.34
2404
2555
1.737793
CACGCTGGAATTGTACCTTCC
59.262
52.381
14.48
14.48
42.15
3.46
2575
2746
0.958876
GGGGGCTGTCGTTTCGAAAT
60.959
55.000
14.69
0.00
37.72
2.17
2576
2747
1.598685
GGGGGCTGTCGTTTCGAAA
60.599
57.895
6.47
6.47
37.72
3.46
2577
2748
2.031465
GGGGGCTGTCGTTTCGAA
59.969
61.111
0.00
0.00
37.72
3.71
2578
2749
4.367023
CGGGGGCTGTCGTTTCGA
62.367
66.667
0.00
0.00
0.00
3.71
2579
2750
4.675029
ACGGGGGCTGTCGTTTCG
62.675
66.667
0.00
0.00
36.04
3.46
2580
2751
2.741211
GACGGGGGCTGTCGTTTC
60.741
66.667
0.00
0.00
39.88
2.78
2623
2794
0.170339
GTATGAAAAGGTGGTGCGGC
59.830
55.000
0.00
0.00
0.00
6.53
2624
2795
1.737793
GAGTATGAAAAGGTGGTGCGG
59.262
52.381
0.00
0.00
0.00
5.69
2625
2796
1.393539
CGAGTATGAAAAGGTGGTGCG
59.606
52.381
0.00
0.00
0.00
5.34
2631
2802
1.067142
TGCGAGCGAGTATGAAAAGGT
60.067
47.619
0.00
0.00
0.00
3.50
2704
2883
1.000283
CGTGCCCCTCTACTCATCATC
60.000
57.143
0.00
0.00
0.00
2.92
2705
2884
1.043816
CGTGCCCCTCTACTCATCAT
58.956
55.000
0.00
0.00
0.00
2.45
2721
4475
0.725117
GGCGGTATGACCTTTTCGTG
59.275
55.000
0.00
0.00
35.66
4.35
2789
4543
2.571757
CACATGCAAGGCAGCCAG
59.428
61.111
15.80
6.90
43.65
4.85
2798
4552
0.537143
GAGGACACCACCACATGCAA
60.537
55.000
0.00
0.00
0.00
4.08
2799
4553
1.073025
GAGGACACCACCACATGCA
59.927
57.895
0.00
0.00
0.00
3.96
2983
4778
2.251371
GCGTCAACGACTTTGGGC
59.749
61.111
6.75
0.00
43.02
5.36
3115
4923
2.138320
CACAACTACTGTCTGCTGGTG
58.862
52.381
0.00
0.00
35.47
4.17
3118
4926
1.797046
CTGCACAACTACTGTCTGCTG
59.203
52.381
0.00
0.00
35.47
4.41
3120
4928
0.514691
GCTGCACAACTACTGTCTGC
59.485
55.000
0.00
0.00
35.47
4.26
3122
4930
0.946221
GCGCTGCACAACTACTGTCT
60.946
55.000
0.00
0.00
35.47
3.41
3178
5090
2.684843
GCAGAAACAGCCAGCTCCG
61.685
63.158
0.00
0.00
0.00
4.63
3242
5164
7.281100
CAGAAAGTGAAAAACTGAAGGTACTCT
59.719
37.037
0.00
0.00
36.97
3.24
3320
5249
0.721718
CGACAAAAGCAGGATCGACC
59.278
55.000
0.00
0.00
34.77
4.79
3428
5357
1.005512
AAATTTGAAACGGGCGGCC
60.006
52.632
20.04
20.04
0.00
6.13
3430
5359
0.315568
TGGAAATTTGAAACGGGCGG
59.684
50.000
0.00
0.00
0.00
6.13
3469
5398
9.719355
TGAGTGCTCATACAGTAATTTTCTTTA
57.281
29.630
0.00
0.00
34.14
1.85
3470
5399
8.621532
TGAGTGCTCATACAGTAATTTTCTTT
57.378
30.769
0.00
0.00
34.14
2.52
3473
5402
6.092670
TGCTGAGTGCTCATACAGTAATTTTC
59.907
38.462
2.06
0.00
43.37
2.29
3475
5404
5.491070
TGCTGAGTGCTCATACAGTAATTT
58.509
37.500
2.06
0.00
43.37
1.82
3476
5405
5.089970
TGCTGAGTGCTCATACAGTAATT
57.910
39.130
2.06
0.00
43.37
1.40
3477
5406
4.743057
TGCTGAGTGCTCATACAGTAAT
57.257
40.909
2.06
0.00
43.37
1.89
3478
5407
4.220602
TCTTGCTGAGTGCTCATACAGTAA
59.779
41.667
2.06
0.00
43.37
2.24
3496
5425
4.670621
CCGCGTTAAACAATGATATCTTGC
59.329
41.667
4.92
0.00
0.00
4.01
3505
5434
0.802494
AGCTCCCGCGTTAAACAATG
59.198
50.000
4.92
0.00
42.32
2.82
3722
5665
5.107453
CGTTCCTCTGTTGTGTGTTCTTATC
60.107
44.000
0.00
0.00
0.00
1.75
3861
5806
4.514577
CAGCTACAGTCCCGGCGG
62.515
72.222
21.46
21.46
0.00
6.13
4169
6126
8.868635
TTACGAAAAATGTTCCCGTTTAAAAT
57.131
26.923
0.00
0.00
35.05
1.82
4244
6221
7.741198
TCAAAAATTGTGCAGAAGTTTGAAAG
58.259
30.769
24.28
15.32
0.00
2.62
4574
6681
3.892588
AGCCGGTTTTTATCAGTTTTGGA
59.107
39.130
1.90
0.00
0.00
3.53
4725
6842
1.083273
GCACAAAAGCGTCGCGTTA
60.083
52.632
18.52
0.00
29.08
3.18
4726
6843
2.351888
GCACAAAAGCGTCGCGTT
60.352
55.556
12.75
12.75
0.00
4.84
4727
6844
3.506312
CTGCACAAAAGCGTCGCGT
62.506
57.895
12.30
5.52
37.31
6.01
4728
6845
2.792543
CTGCACAAAAGCGTCGCG
60.793
61.111
12.30
0.00
37.31
5.87
4729
6846
2.427410
CCTGCACAAAAGCGTCGC
60.427
61.111
9.80
9.80
37.31
5.19
4730
6847
1.369209
CACCTGCACAAAAGCGTCG
60.369
57.895
0.00
0.00
37.31
5.12
4731
6848
1.008538
CCACCTGCACAAAAGCGTC
60.009
57.895
0.00
0.00
37.31
5.19
4732
6849
1.453015
TCCACCTGCACAAAAGCGT
60.453
52.632
0.00
0.00
37.31
5.07
4733
6850
1.008538
GTCCACCTGCACAAAAGCG
60.009
57.895
0.00
0.00
37.31
4.68
4734
6851
0.675633
ATGTCCACCTGCACAAAAGC
59.324
50.000
0.00
0.00
0.00
3.51
4735
6852
1.270550
GGATGTCCACCTGCACAAAAG
59.729
52.381
0.00
0.00
35.64
2.27
4736
6853
1.327303
GGATGTCCACCTGCACAAAA
58.673
50.000
0.00
0.00
35.64
2.44
4737
6854
0.888736
CGGATGTCCACCTGCACAAA
60.889
55.000
0.00
0.00
35.14
2.83
4738
6855
1.302431
CGGATGTCCACCTGCACAA
60.302
57.895
0.00
0.00
35.14
3.33
4739
6856
2.347114
CGGATGTCCACCTGCACA
59.653
61.111
0.00
0.00
35.14
4.57
4740
6857
2.436646
CCGGATGTCCACCTGCAC
60.437
66.667
0.00
0.00
35.14
4.57
5036
7153
0.951040
GCCAGGTCTTGAACGTCTGG
60.951
60.000
11.74
11.74
45.59
3.86
5201
7318
0.832135
ACTCCTTCTCCGACTTGGCA
60.832
55.000
0.00
0.00
37.80
4.92
5290
7407
1.039068
TACCCGTTTCCACTCGTTGA
58.961
50.000
0.00
0.00
0.00
3.18
5291
7408
1.528161
GTTACCCGTTTCCACTCGTTG
59.472
52.381
0.00
0.00
0.00
4.10
5311
7428
7.550551
TGAAAACAATGAGCTAGATAGGAGTTG
59.449
37.037
0.00
0.00
0.00
3.16
5346
7464
2.279741
GAGATGCGCATGTACCTGAAA
58.720
47.619
30.76
0.00
0.00
2.69
5347
7465
1.473257
GGAGATGCGCATGTACCTGAA
60.473
52.381
30.76
0.00
0.00
3.02
5349
7467
1.217585
CGGAGATGCGCATGTACCTG
61.218
60.000
30.76
14.11
0.00
4.00
5358
7476
0.447801
AAATCAACACGGAGATGCGC
59.552
50.000
0.00
0.00
0.00
6.09
5374
7492
6.807789
ACACATTACAAAACAACCCGTAAAT
58.192
32.000
0.00
0.00
0.00
1.40
5380
7498
5.522097
CCTGAAACACATTACAAAACAACCC
59.478
40.000
0.00
0.00
0.00
4.11
5384
7502
4.355437
CGCCTGAAACACATTACAAAACA
58.645
39.130
0.00
0.00
0.00
2.83
5502
7620
5.182190
TGGCGAGAAGAATACATAGAGCTAG
59.818
44.000
0.00
0.00
0.00
3.42
5577
7698
4.020218
TGCCATCCCCTTATTATCTCTTCG
60.020
45.833
0.00
0.00
0.00
3.79
5579
7700
5.930209
TTGCCATCCCCTTATTATCTCTT
57.070
39.130
0.00
0.00
0.00
2.85
5620
7741
3.461773
CCGTGTCCCTCCGAGCAT
61.462
66.667
0.00
0.00
0.00
3.79
5669
7790
6.183360
GCAGGGAAGTATAGTCTACGTGTTAA
60.183
42.308
0.00
0.00
0.00
2.01
5683
7804
0.254178
CAGCACCAGCAGGGAAGTAT
59.746
55.000
0.00
0.00
45.49
2.12
5715
7836
0.612229
AGCCATCTGGACACACTGAG
59.388
55.000
0.00
0.00
37.39
3.35
5741
7862
2.917971
GTCTGTCTGTCTGTCGCATAAC
59.082
50.000
0.00
0.00
0.00
1.89
5748
7869
1.600663
CCGTGTGTCTGTCTGTCTGTC
60.601
57.143
0.00
0.00
0.00
3.51
5749
7870
0.385751
CCGTGTGTCTGTCTGTCTGT
59.614
55.000
0.00
0.00
0.00
3.41
5750
7871
0.668535
TCCGTGTGTCTGTCTGTCTG
59.331
55.000
0.00
0.00
0.00
3.51
5751
7872
0.669077
GTCCGTGTGTCTGTCTGTCT
59.331
55.000
0.00
0.00
0.00
3.41
5752
7873
0.384309
TGTCCGTGTGTCTGTCTGTC
59.616
55.000
0.00
0.00
0.00
3.51
5753
7874
0.102481
GTGTCCGTGTGTCTGTCTGT
59.898
55.000
0.00
0.00
0.00
3.41
5754
7875
0.934901
CGTGTCCGTGTGTCTGTCTG
60.935
60.000
0.00
0.00
0.00
3.51
5755
7876
1.359117
CGTGTCCGTGTGTCTGTCT
59.641
57.895
0.00
0.00
0.00
3.41
5863
7985
1.407618
TCCCACGGTAGAATCACATCG
59.592
52.381
0.00
0.00
0.00
3.84
5880
8002
1.253100
TCCGAAACAGCCATTTTCCC
58.747
50.000
0.00
0.00
30.44
3.97
5885
8007
1.600023
TCGTTTCCGAAACAGCCATT
58.400
45.000
21.07
0.00
40.86
3.16
5896
8018
6.259167
TCAACCTATATTCCATTTCGTTTCCG
59.741
38.462
0.00
0.00
0.00
4.30
5957
8079
1.066257
CAAGCACCAAAACGCTGCT
59.934
52.632
0.00
0.00
43.21
4.24
5989
8111
0.463654
GTGGGCATTATCAGCGTCCA
60.464
55.000
0.00
0.00
0.00
4.02
5993
8115
1.002142
CATGTGTGGGCATTATCAGCG
60.002
52.381
0.00
0.00
0.00
5.18
6021
8151
0.976073
TCATTCGGTCTCAGGGTCCC
60.976
60.000
0.00
0.00
0.00
4.46
6040
8170
4.090066
CGAAAATGTTCAGTTCGATCGACT
59.910
41.667
19.26
15.14
45.32
4.18
6063
8193
2.789715
GGTGGGGATCGTACCGGAC
61.790
68.421
9.46
0.32
0.00
4.79
6064
8194
2.442643
GGTGGGGATCGTACCGGA
60.443
66.667
9.46
0.00
0.00
5.14
6065
8195
3.543641
GGGTGGGGATCGTACCGG
61.544
72.222
0.00
0.00
35.31
5.28
6066
8196
3.543641
GGGGTGGGGATCGTACCG
61.544
72.222
5.81
0.00
35.31
4.02
6067
8197
3.166394
GGGGGTGGGGATCGTACC
61.166
72.222
3.73
3.73
0.00
3.34
6068
8198
3.543641
CGGGGGTGGGGATCGTAC
61.544
72.222
0.00
0.00
0.00
3.67
6083
8213
4.394712
AAGGGTTCAGGAGCGCGG
62.395
66.667
8.83
0.00
0.00
6.46
6084
8214
3.121030
CAAGGGTTCAGGAGCGCG
61.121
66.667
0.00
0.00
0.00
6.86
6085
8215
2.521958
TAGCAAGGGTTCAGGAGCGC
62.522
60.000
0.00
0.00
0.00
5.92
6086
8216
0.036388
TTAGCAAGGGTTCAGGAGCG
60.036
55.000
0.00
0.00
0.00
5.03
6087
8217
1.454201
GTTAGCAAGGGTTCAGGAGC
58.546
55.000
0.00
0.00
0.00
4.70
6088
8218
1.275291
TCGTTAGCAAGGGTTCAGGAG
59.725
52.381
0.00
0.00
0.00
3.69
6089
8219
1.344065
TCGTTAGCAAGGGTTCAGGA
58.656
50.000
0.00
0.00
0.00
3.86
6090
8220
2.178912
TTCGTTAGCAAGGGTTCAGG
57.821
50.000
0.00
0.00
0.00
3.86
6091
8221
2.096417
CGTTTCGTTAGCAAGGGTTCAG
60.096
50.000
0.00
0.00
0.00
3.02
6092
8222
1.868498
CGTTTCGTTAGCAAGGGTTCA
59.132
47.619
0.00
0.00
0.00
3.18
6093
8223
1.869132
ACGTTTCGTTAGCAAGGGTTC
59.131
47.619
0.00
0.00
36.35
3.62
6094
8224
1.869132
GACGTTTCGTTAGCAAGGGTT
59.131
47.619
0.00
0.00
41.37
4.11
6095
8225
1.069668
AGACGTTTCGTTAGCAAGGGT
59.930
47.619
0.00
0.00
41.37
4.34
6096
8226
1.725164
GAGACGTTTCGTTAGCAAGGG
59.275
52.381
0.00
0.00
41.37
3.95
6097
8227
2.673833
AGAGACGTTTCGTTAGCAAGG
58.326
47.619
0.00
0.00
41.37
3.61
6098
8228
3.661936
GCAAGAGACGTTTCGTTAGCAAG
60.662
47.826
0.00
0.00
41.37
4.01
6099
8229
2.220133
GCAAGAGACGTTTCGTTAGCAA
59.780
45.455
0.00
0.00
41.37
3.91
6100
8230
1.790623
GCAAGAGACGTTTCGTTAGCA
59.209
47.619
0.00
0.00
41.37
3.49
6101
8231
1.790623
TGCAAGAGACGTTTCGTTAGC
59.209
47.619
0.00
4.62
41.37
3.09
6102
8232
2.160143
CGTGCAAGAGACGTTTCGTTAG
60.160
50.000
0.00
0.00
41.37
2.34
6103
8233
1.782569
CGTGCAAGAGACGTTTCGTTA
59.217
47.619
0.00
0.00
41.37
3.18
6104
8234
0.575390
CGTGCAAGAGACGTTTCGTT
59.425
50.000
0.00
0.00
41.37
3.85
6121
8626
3.920446
GGCACCCATTTATTTTGTTCGT
58.080
40.909
0.00
0.00
0.00
3.85
6139
8644
5.860941
TTTGTTTGTTCAAATCTAGGGCA
57.139
34.783
1.33
0.00
33.23
5.36
6165
8670
1.589414
AGGGCTGGCTATCTTGTTCT
58.411
50.000
0.00
0.00
0.00
3.01
6199
8705
3.187637
TCTGTTTTGTACGCAATGGCTAC
59.812
43.478
0.00
0.00
38.10
3.58
6220
8726
0.826062
CACATGGCAAATCCCCCTTC
59.174
55.000
0.00
0.00
0.00
3.46
6227
8733
7.887996
TTTTTATCTCAACACATGGCAAATC
57.112
32.000
0.00
0.00
0.00
2.17
6273
8780
8.923270
TCATTTTTGGTATTCTTTTCACCTTCT
58.077
29.630
0.00
0.00
33.28
2.85
6367
8874
8.707839
GTCGATTGGCAATATTTTTGAGAAAAA
58.292
29.630
13.65
0.00
43.76
1.94
6373
8880
7.857734
TCTAGTCGATTGGCAATATTTTTGA
57.142
32.000
13.65
5.61
0.00
2.69
6375
8882
8.050778
TGTTCTAGTCGATTGGCAATATTTTT
57.949
30.769
13.65
1.16
0.00
1.94
6380
8887
8.902540
ATAATTGTTCTAGTCGATTGGCAATA
57.097
30.769
13.65
0.00
0.00
1.90
Based at the University of Bristol with support from BBSRC .
AutoCloner maintained by Alex Coulton.