Multiple sequence alignment - TraesCS4A01G094600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G094600 chr4A 100.000 6506 0 0 1 6506 102831685 102838190 0.000000e+00 12015.0
1 TraesCS4A01G094600 chr4D 90.437 2541 111 51 628 3097 362448135 362445656 0.000000e+00 3225.0
2 TraesCS4A01G094600 chr4D 93.057 1325 47 17 4743 6056 362445099 362443809 0.000000e+00 1895.0
3 TraesCS4A01G094600 chr4D 86.837 547 33 14 98 618 362448722 362448189 5.660000e-160 575.0
4 TraesCS4A01G094600 chr4D 91.872 406 10 5 3124 3519 362445513 362445121 4.440000e-151 545.0
5 TraesCS4A01G094600 chr4D 93.252 163 10 1 6106 6267 362443384 362443222 8.430000e-59 239.0
6 TraesCS4A01G094600 chr4B 92.962 1293 56 15 4742 6028 447767003 447765740 0.000000e+00 1851.0
7 TraesCS4A01G094600 chr4B 90.173 1099 50 24 628 1688 447771429 447770351 0.000000e+00 1378.0
8 TraesCS4A01G094600 chr4B 88.710 992 42 29 1754 2704 447770355 447769393 0.000000e+00 1147.0
9 TraesCS4A01G094600 chr4B 92.269 401 20 7 3127 3520 447767427 447767031 5.700000e-155 558.0
10 TraesCS4A01G094600 chr4B 91.111 315 27 1 6186 6499 447765281 447764967 6.030000e-115 425.0
11 TraesCS4A01G094600 chr4B 83.979 387 35 17 2716 3087 447767806 447767432 4.830000e-91 346.0
12 TraesCS4A01G094600 chr4B 85.366 287 19 9 348 618 447794278 447793999 6.430000e-70 276.0
13 TraesCS4A01G094600 chr4B 81.818 220 33 3 3615 3833 470308854 470308641 1.860000e-40 178.0
14 TraesCS4A01G094600 chr4B 75.904 332 72 7 1564 1891 639011188 639010861 5.220000e-36 163.0
15 TraesCS4A01G094600 chr7A 93.361 1220 38 11 3519 4722 706849906 706848714 0.000000e+00 1764.0
16 TraesCS4A01G094600 chr7A 83.024 807 95 30 3818 4594 726426606 726427400 0.000000e+00 693.0
17 TraesCS4A01G094600 chr7A 77.249 189 32 11 4448 4630 446367368 446367551 4.150000e-17 100.0
18 TraesCS4A01G094600 chr7D 88.732 1136 95 28 3612 4722 88318191 88317064 0.000000e+00 1358.0
19 TraesCS4A01G094600 chr7D 79.688 896 123 44 3870 4723 199920334 199919456 5.620000e-165 592.0
20 TraesCS4A01G094600 chr7D 85.417 96 7 1 3519 3607 413681010 413681105 6.950000e-15 93.5
21 TraesCS4A01G094600 chr2D 87.229 924 91 23 3819 4725 639272082 639271169 0.000000e+00 1027.0
22 TraesCS4A01G094600 chr3B 86.022 930 88 27 3819 4722 712184819 712183906 0.000000e+00 959.0
23 TraesCS4A01G094600 chr3B 100.000 29 0 0 5991 6019 553993378 553993350 3.000000e-03 54.7
24 TraesCS4A01G094600 chr1D 84.183 942 108 30 3819 4723 444920030 444920967 0.000000e+00 876.0
25 TraesCS4A01G094600 chr1D 84.507 71 8 3 1255 1323 269515961 269515892 4.210000e-07 67.6
26 TraesCS4A01G094600 chr2B 84.153 915 96 25 3819 4722 680525667 680524791 0.000000e+00 841.0
27 TraesCS4A01G094600 chr2B 97.143 35 1 0 1 35 24700520 24700554 7.040000e-05 60.2
28 TraesCS4A01G094600 chr2B 100.000 29 0 0 3521 3549 671104645 671104673 3.000000e-03 54.7
29 TraesCS4A01G094600 chr1B 86.300 781 84 19 3819 4582 640785179 640785953 0.000000e+00 828.0
30 TraesCS4A01G094600 chr1B 84.507 71 8 3 1255 1323 369512113 369512182 4.210000e-07 67.6
31 TraesCS4A01G094600 chr3D 83.802 889 85 29 3844 4723 118412655 118411817 0.000000e+00 789.0
32 TraesCS4A01G094600 chr5A 85.037 802 78 21 3812 4602 2833196 2833966 0.000000e+00 778.0
33 TraesCS4A01G094600 chr7B 80.986 710 82 36 4054 4723 743990632 743989936 1.250000e-141 514.0
34 TraesCS4A01G094600 chr5D 83.370 457 38 28 4298 4722 321374446 321373996 7.910000e-104 388.0
35 TraesCS4A01G094600 chr6B 86.626 329 24 8 3518 3826 101176805 101176477 4.830000e-91 346.0
36 TraesCS4A01G094600 chr6B 91.667 48 4 0 4777 4824 479396878 479396925 4.210000e-07 67.6
37 TraesCS4A01G094600 chr6B 100.000 30 0 0 5990 6019 719993125 719993096 1.000000e-03 56.5
38 TraesCS4A01G094600 chr1A 77.116 319 71 2 1565 1882 333499018 333499335 4.010000e-42 183.0
39 TraesCS4A01G094600 chr1A 84.507 71 8 3 1255 1323 333498713 333498782 4.210000e-07 67.6
40 TraesCS4A01G094600 chrUn 77.077 349 38 13 3518 3833 88910550 88910889 5.220000e-36 163.0
41 TraesCS4A01G094600 chr5B 86.364 110 14 1 4579 4687 118965346 118965237 1.150000e-22 119.0
42 TraesCS4A01G094600 chr6D 95.238 42 2 0 4783 4824 341078787 341078746 4.210000e-07 67.6
43 TraesCS4A01G094600 chr6A 95.238 42 2 0 4783 4824 480805906 480805865 4.210000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G094600 chr4A 102831685 102838190 6505 False 12015.000000 12015 100.000000 1 6506 1 chr4A.!!$F1 6505
1 TraesCS4A01G094600 chr4D 362443222 362448722 5500 True 1295.800000 3225 91.091000 98 6267 5 chr4D.!!$R1 6169
2 TraesCS4A01G094600 chr4B 447764967 447771429 6462 True 950.833333 1851 89.867333 628 6499 6 chr4B.!!$R4 5871
3 TraesCS4A01G094600 chr7A 706848714 706849906 1192 True 1764.000000 1764 93.361000 3519 4722 1 chr7A.!!$R1 1203
4 TraesCS4A01G094600 chr7A 726426606 726427400 794 False 693.000000 693 83.024000 3818 4594 1 chr7A.!!$F2 776
5 TraesCS4A01G094600 chr7D 88317064 88318191 1127 True 1358.000000 1358 88.732000 3612 4722 1 chr7D.!!$R1 1110
6 TraesCS4A01G094600 chr7D 199919456 199920334 878 True 592.000000 592 79.688000 3870 4723 1 chr7D.!!$R2 853
7 TraesCS4A01G094600 chr2D 639271169 639272082 913 True 1027.000000 1027 87.229000 3819 4725 1 chr2D.!!$R1 906
8 TraesCS4A01G094600 chr3B 712183906 712184819 913 True 959.000000 959 86.022000 3819 4722 1 chr3B.!!$R2 903
9 TraesCS4A01G094600 chr1D 444920030 444920967 937 False 876.000000 876 84.183000 3819 4723 1 chr1D.!!$F1 904
10 TraesCS4A01G094600 chr2B 680524791 680525667 876 True 841.000000 841 84.153000 3819 4722 1 chr2B.!!$R1 903
11 TraesCS4A01G094600 chr1B 640785179 640785953 774 False 828.000000 828 86.300000 3819 4582 1 chr1B.!!$F2 763
12 TraesCS4A01G094600 chr3D 118411817 118412655 838 True 789.000000 789 83.802000 3844 4723 1 chr3D.!!$R1 879
13 TraesCS4A01G094600 chr5A 2833196 2833966 770 False 778.000000 778 85.037000 3812 4602 1 chr5A.!!$F1 790
14 TraesCS4A01G094600 chr7B 743989936 743990632 696 True 514.000000 514 80.986000 4054 4723 1 chr7B.!!$R1 669

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
630 656 0.106894 GTCGGAACCCCATCCATCTC 59.893 60.0 0.00 0.00 39.61 2.75 F
732 825 0.168788 CACCAGGCGCATAGTTGTTG 59.831 55.0 10.83 0.00 0.00 3.33 F
2577 2748 0.030603 AACCACCACCCCAACCAATT 60.031 50.0 0.00 0.00 0.00 2.32 F
2580 2751 0.316841 CACCACCCCAACCAATTTCG 59.683 55.0 0.00 0.00 0.00 3.46 F
2838 4597 0.462047 CAGGGTACGTGGATGGCTTC 60.462 60.0 0.00 0.00 40.97 3.86 F
3120 4928 0.514255 CAGTGTCACGAATGCACCAG 59.486 55.0 0.00 0.00 35.00 4.00 F
4735 6852 0.179243 ATTTCCGTTTAACGCGACGC 60.179 50.0 15.93 10.49 40.91 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2320 2459 0.110644 GAGCAAGCGTTCGTCTTTGG 60.111 55.0 0.00 0.0 0.00 3.28 R
2623 2794 0.170339 GTATGAAAAGGTGGTGCGGC 59.830 55.0 0.00 0.0 0.00 6.53 R
3430 5359 0.315568 TGGAAATTTGAAACGGGCGG 59.684 50.0 0.00 0.0 0.00 6.13 R
3505 5434 0.802494 AGCTCCCGCGTTAAACAATG 59.198 50.0 4.92 0.0 42.32 2.82 R
4734 6851 0.675633 ATGTCCACCTGCACAAAAGC 59.324 50.0 0.00 0.0 0.00 3.51 R
4737 6854 0.888736 CGGATGTCCACCTGCACAAA 60.889 55.0 0.00 0.0 35.14 2.83 R
6086 8216 0.036388 TTAGCAAGGGTTCAGGAGCG 60.036 55.0 0.00 0.0 0.00 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.617368 ATCGGGTTCCTGGAGACG 58.383 61.111 9.53 9.53 0.00 4.18
18 19 2.722201 ATCGGGTTCCTGGAGACGC 61.722 63.158 10.59 11.71 0.00 5.19
19 20 4.796231 CGGGTTCCTGGAGACGCG 62.796 72.222 22.91 22.91 43.81 6.01
20 21 3.379445 GGGTTCCTGGAGACGCGA 61.379 66.667 15.93 0.00 0.00 5.87
21 22 2.126031 GGTTCCTGGAGACGCGAC 60.126 66.667 15.93 6.86 0.00 5.19
22 23 2.637383 GGTTCCTGGAGACGCGACT 61.637 63.158 15.93 13.61 0.00 4.18
23 24 1.444553 GTTCCTGGAGACGCGACTG 60.445 63.158 17.32 1.19 0.00 3.51
24 25 2.636412 TTCCTGGAGACGCGACTGG 61.636 63.158 17.32 11.38 0.00 4.00
25 26 4.135153 CCTGGAGACGCGACTGGG 62.135 72.222 17.32 11.15 0.00 4.45
26 27 4.803426 CTGGAGACGCGACTGGGC 62.803 72.222 17.32 1.14 0.00 5.36
32 33 4.922026 ACGCGACTGGGCCGTTTT 62.922 61.111 15.93 0.00 0.00 2.43
33 34 3.656045 CGCGACTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
50 51 2.795175 TTTTTGACGCCGGCATAAAA 57.205 40.000 28.98 24.36 0.00 1.52
51 52 2.795175 TTTTGACGCCGGCATAAAAA 57.205 40.000 28.98 21.07 0.00 1.94
73 74 3.878160 AATCGTCTGAGAAGGTCTTCC 57.122 47.619 7.06 0.87 40.33 3.46
75 76 3.715638 TCGTCTGAGAAGGTCTTCCTA 57.284 47.619 7.06 0.00 44.35 2.94
76 77 4.030314 TCGTCTGAGAAGGTCTTCCTAA 57.970 45.455 7.06 0.00 44.35 2.69
77 78 4.404640 TCGTCTGAGAAGGTCTTCCTAAA 58.595 43.478 7.06 0.00 44.35 1.85
78 79 4.459685 TCGTCTGAGAAGGTCTTCCTAAAG 59.540 45.833 7.06 1.52 44.35 1.85
79 80 4.381079 CGTCTGAGAAGGTCTTCCTAAAGG 60.381 50.000 7.06 0.00 44.35 3.11
80 81 3.515901 TCTGAGAAGGTCTTCCTAAAGGC 59.484 47.826 7.06 0.00 44.35 4.35
81 82 2.233922 TGAGAAGGTCTTCCTAAAGGCG 59.766 50.000 7.06 0.00 44.35 5.52
82 83 1.066071 AGAAGGTCTTCCTAAAGGCGC 60.066 52.381 0.00 0.00 44.35 6.53
83 84 0.391263 AAGGTCTTCCTAAAGGCGCG 60.391 55.000 0.00 0.00 44.35 6.86
84 85 1.814169 GGTCTTCCTAAAGGCGCGG 60.814 63.158 8.83 0.00 38.03 6.46
85 86 2.125269 TCTTCCTAAAGGCGCGGC 60.125 61.111 27.06 27.06 33.03 6.53
86 87 2.125106 CTTCCTAAAGGCGCGGCT 60.125 61.111 31.39 31.39 34.44 5.52
87 88 2.435938 TTCCTAAAGGCGCGGCTG 60.436 61.111 36.94 23.09 34.44 4.85
88 89 2.852495 CTTCCTAAAGGCGCGGCTGA 62.852 60.000 36.94 25.09 34.44 4.26
89 90 2.435938 CCTAAAGGCGCGGCTGAA 60.436 61.111 36.94 24.67 0.00 3.02
90 91 2.464459 CCTAAAGGCGCGGCTGAAG 61.464 63.158 36.94 31.31 0.00 3.02
91 92 1.447838 CTAAAGGCGCGGCTGAAGA 60.448 57.895 36.94 19.47 0.00 2.87
92 93 0.811616 CTAAAGGCGCGGCTGAAGAT 60.812 55.000 36.94 17.72 0.00 2.40
93 94 1.089481 TAAAGGCGCGGCTGAAGATG 61.089 55.000 36.94 0.00 0.00 2.90
109 110 2.200081 AGATGCCCTAAGCTTTGGAGA 58.800 47.619 26.04 13.21 44.23 3.71
110 111 2.092699 AGATGCCCTAAGCTTTGGAGAC 60.093 50.000 26.04 15.67 44.23 3.36
167 168 2.138179 ATGGGATGGCAATGGCAGC 61.138 57.895 16.91 16.91 43.70 5.25
202 203 2.290641 CCCTCGTGTGGAAAGTTTGAAG 59.709 50.000 0.00 0.00 0.00 3.02
206 207 1.673920 GTGTGGAAAGTTTGAAGCGGA 59.326 47.619 0.00 0.00 0.00 5.54
208 209 1.947456 GTGGAAAGTTTGAAGCGGACT 59.053 47.619 0.00 0.00 0.00 3.85
210 211 3.751698 GTGGAAAGTTTGAAGCGGACTAT 59.248 43.478 0.00 0.00 0.00 2.12
215 216 3.589988 AGTTTGAAGCGGACTATCACAG 58.410 45.455 0.00 0.00 0.00 3.66
216 217 3.258372 AGTTTGAAGCGGACTATCACAGA 59.742 43.478 0.00 0.00 0.00 3.41
219 220 2.164422 TGAAGCGGACTATCACAGACAG 59.836 50.000 0.00 0.00 0.00 3.51
221 222 0.867753 GCGGACTATCACAGACAGCG 60.868 60.000 0.00 0.00 31.76 5.18
222 223 0.733150 CGGACTATCACAGACAGCGA 59.267 55.000 0.00 0.00 0.00 4.93
231 232 2.866156 TCACAGACAGCGAGAAAACTTG 59.134 45.455 0.00 0.00 0.00 3.16
244 246 1.187567 AAACTTGGCCATGGCTCCAC 61.188 55.000 34.70 19.38 41.60 4.02
290 292 2.890474 CGAAGGAATCCGCCACCG 60.890 66.667 0.00 0.00 0.00 4.94
332 334 0.109873 GTACTCACGAGTCACACCGG 60.110 60.000 0.00 0.00 42.54 5.28
350 352 2.179018 CCGGTTTTGATGCTGCCG 59.821 61.111 0.00 0.00 41.82 5.69
351 353 2.331893 CCGGTTTTGATGCTGCCGA 61.332 57.895 2.66 0.00 44.57 5.54
352 354 1.135315 CGGTTTTGATGCTGCCGAG 59.865 57.895 0.00 0.00 44.57 4.63
353 355 1.298157 CGGTTTTGATGCTGCCGAGA 61.298 55.000 0.00 0.00 44.57 4.04
354 356 0.449388 GGTTTTGATGCTGCCGAGAG 59.551 55.000 0.00 0.00 0.00 3.20
383 385 2.056223 CAGATGCCCCAAGCCCAAG 61.056 63.158 0.00 0.00 42.71 3.61
388 390 2.359975 CCCCAAGCCCAAGTCGTC 60.360 66.667 0.00 0.00 0.00 4.20
389 391 2.359975 CCCAAGCCCAAGTCGTCC 60.360 66.667 0.00 0.00 0.00 4.79
390 392 2.429930 CCAAGCCCAAGTCGTCCA 59.570 61.111 0.00 0.00 0.00 4.02
391 393 1.002134 CCAAGCCCAAGTCGTCCAT 60.002 57.895 0.00 0.00 0.00 3.41
392 394 0.251916 CCAAGCCCAAGTCGTCCATA 59.748 55.000 0.00 0.00 0.00 2.74
398 413 1.134788 CCCAAGTCGTCCATAGTGGTC 60.135 57.143 0.00 0.00 39.03 4.02
416 431 3.832171 GTCGACTCGCGCTGCTTG 61.832 66.667 8.70 0.00 40.61 4.01
417 432 4.342987 TCGACTCGCGCTGCTTGT 62.343 61.111 5.56 0.00 40.61 3.16
418 433 3.406361 CGACTCGCGCTGCTTGTT 61.406 61.111 5.56 0.00 0.00 2.83
420 435 2.280119 ACTCGCGCTGCTTGTTGA 60.280 55.556 5.56 0.00 0.00 3.18
421 436 1.831389 GACTCGCGCTGCTTGTTGAA 61.831 55.000 5.56 0.00 0.00 2.69
429 444 1.135859 GCTGCTTGTTGAACGGATGAG 60.136 52.381 0.00 0.00 0.00 2.90
461 476 4.527564 GGCGAGTTTTTATCGGATGATTG 58.472 43.478 0.00 0.00 40.50 2.67
497 512 8.303876 GCAAAGAAGGTAGATATGGAAAACAAA 58.696 33.333 0.00 0.00 0.00 2.83
503 518 8.848474 AGGTAGATATGGAAAACAAATATCGG 57.152 34.615 0.00 0.00 38.02 4.18
504 519 8.437575 AGGTAGATATGGAAAACAAATATCGGT 58.562 33.333 0.00 0.00 38.02 4.69
505 520 8.718734 GGTAGATATGGAAAACAAATATCGGTC 58.281 37.037 0.00 0.00 38.02 4.79
506 521 9.490379 GTAGATATGGAAAACAAATATCGGTCT 57.510 33.333 0.00 0.00 38.02 3.85
507 522 8.608844 AGATATGGAAAACAAATATCGGTCTC 57.391 34.615 0.00 0.00 38.02 3.36
508 523 8.210946 AGATATGGAAAACAAATATCGGTCTCA 58.789 33.333 0.00 0.00 38.02 3.27
565 591 1.315257 CCATTCCAAACCCGCAGAGG 61.315 60.000 0.00 0.00 40.63 3.69
574 600 3.733960 CCGCAGAGGTCGTCGACA 61.734 66.667 25.64 0.00 33.68 4.35
575 601 2.485582 CGCAGAGGTCGTCGACAT 59.514 61.111 25.64 20.08 33.68 3.06
576 602 1.712018 CCGCAGAGGTCGTCGACATA 61.712 60.000 25.64 0.00 33.68 2.29
577 603 0.589229 CGCAGAGGTCGTCGACATAC 60.589 60.000 25.64 15.56 33.68 2.39
583 609 0.317603 GGTCGTCGACATACATCCGG 60.318 60.000 25.64 0.00 33.68 5.14
602 628 0.660300 GCAAGGACAAAAAGGACGCG 60.660 55.000 3.53 3.53 0.00 6.01
618 644 2.506438 CGAAGGAGGCGTCGGAAC 60.506 66.667 0.00 0.00 33.62 3.62
620 646 3.660732 GAAGGAGGCGTCGGAACCC 62.661 68.421 0.00 0.00 0.00 4.11
623 649 3.782443 GAGGCGTCGGAACCCCAT 61.782 66.667 0.00 0.00 0.00 4.00
625 651 4.851179 GGCGTCGGAACCCCATCC 62.851 72.222 0.00 0.00 36.05 3.51
626 652 4.090588 GCGTCGGAACCCCATCCA 62.091 66.667 0.00 0.00 39.61 3.41
627 653 2.908015 CGTCGGAACCCCATCCAT 59.092 61.111 0.00 0.00 39.61 3.41
629 655 1.686325 CGTCGGAACCCCATCCATCT 61.686 60.000 0.00 0.00 39.61 2.90
630 656 0.106894 GTCGGAACCCCATCCATCTC 59.893 60.000 0.00 0.00 39.61 2.75
632 658 0.546122 CGGAACCCCATCCATCTCAA 59.454 55.000 0.00 0.00 39.61 3.02
665 734 3.231736 GCGGGAGGAGGCCGATAA 61.232 66.667 0.00 0.00 0.00 1.75
672 742 3.435169 GGGAGGAGGCCGATAAAAAGAAT 60.435 47.826 0.00 0.00 0.00 2.40
673 743 3.815962 GGAGGAGGCCGATAAAAAGAATC 59.184 47.826 0.00 0.00 0.00 2.52
676 746 5.261216 AGGAGGCCGATAAAAAGAATCAAA 58.739 37.500 0.00 0.00 0.00 2.69
692 779 7.346751 AGAATCAAATACAAATACGCCCATT 57.653 32.000 0.00 0.00 0.00 3.16
698 785 8.240682 TCAAATACAAATACGCCCATTATATGC 58.759 33.333 0.00 0.00 0.00 3.14
699 786 7.695480 AATACAAATACGCCCATTATATGCA 57.305 32.000 0.00 0.00 0.00 3.96
700 787 5.627499 ACAAATACGCCCATTATATGCAG 57.373 39.130 0.00 0.00 0.00 4.41
731 824 1.586154 GCACCAGGCGCATAGTTGTT 61.586 55.000 10.83 0.00 0.00 2.83
732 825 0.168788 CACCAGGCGCATAGTTGTTG 59.831 55.000 10.83 0.00 0.00 3.33
734 827 0.447801 CCAGGCGCATAGTTGTTGTC 59.552 55.000 10.83 0.00 0.00 3.18
735 828 0.447801 CAGGCGCATAGTTGTTGTCC 59.552 55.000 10.83 0.00 0.00 4.02
737 830 1.423845 GCGCATAGTTGTTGTCCCG 59.576 57.895 0.30 0.00 0.00 5.14
738 831 1.296056 GCGCATAGTTGTTGTCCCGT 61.296 55.000 0.30 0.00 0.00 5.28
741 834 2.538449 CGCATAGTTGTTGTCCCGTATC 59.462 50.000 0.00 0.00 0.00 2.24
743 836 3.680475 GCATAGTTGTTGTCCCGTATCCA 60.680 47.826 0.00 0.00 0.00 3.41
744 837 2.762535 AGTTGTTGTCCCGTATCCAG 57.237 50.000 0.00 0.00 0.00 3.86
745 838 1.084289 GTTGTTGTCCCGTATCCAGC 58.916 55.000 0.00 0.00 0.00 4.85
796 899 6.255887 GCTACCATCTCCGATAAATTATTCCG 59.744 42.308 0.00 0.00 0.00 4.30
893 999 6.728164 TCCCATAATTGTTTGATTTCCCTTCA 59.272 34.615 0.00 0.00 0.00 3.02
998 1118 4.567318 ATCTTGGCAAGATCGGCC 57.433 55.556 31.80 20.61 44.79 6.13
1095 1215 2.541120 GCTGTCCATGCTGATCGCC 61.541 63.158 7.00 0.00 38.05 5.54
1183 1303 2.274760 GGAGCTGCCAGGATTGCT 59.725 61.111 0.00 0.00 38.59 3.91
1184 1304 3.824810 GAGCTGCCAGGATTGCTC 58.175 61.111 11.39 11.39 43.75 4.26
1185 1305 1.823041 GAGCTGCCAGGATTGCTCC 60.823 63.158 14.38 0.00 44.16 4.70
1215 1335 2.202892 GACTTCCCGGGCGATGAC 60.203 66.667 18.49 2.03 0.00 3.06
1890 2010 0.678048 GGTTCCACCAGGTGAGCATC 60.678 60.000 22.37 6.44 38.42 3.91
1964 2088 0.723414 AATCGTCATGCTCGTTGCTG 59.277 50.000 9.23 2.07 43.37 4.41
1965 2089 1.699656 ATCGTCATGCTCGTTGCTGC 61.700 55.000 9.23 0.00 43.37 5.25
1966 2090 2.385875 CGTCATGCTCGTTGCTGCT 61.386 57.895 0.00 0.00 43.37 4.24
1989 2113 8.424918 TGCTATGTTTGAATCAAAACCCTTTTA 58.575 29.630 10.27 0.00 38.93 1.52
2004 2128 6.223351 ACCCTTTTAAAATCACGTTTTGGA 57.777 33.333 0.09 0.00 40.17 3.53
2131 2260 3.180507 TGGGCTGCCTATTCCAAATTTT 58.819 40.909 19.68 0.00 0.00 1.82
2137 2266 5.499139 TGCCTATTCCAAATTTTAGCTCG 57.501 39.130 0.00 0.00 0.00 5.03
2139 2268 4.261614 GCCTATTCCAAATTTTAGCTCGGG 60.262 45.833 0.00 0.00 0.00 5.14
2147 2286 1.541379 TTTTAGCTCGGGGCCTTTTC 58.459 50.000 0.84 0.00 43.05 2.29
2153 2292 0.392595 CTCGGGGCCTTTTCCACTAC 60.393 60.000 0.84 0.00 0.00 2.73
2154 2293 0.838987 TCGGGGCCTTTTCCACTACT 60.839 55.000 0.84 0.00 0.00 2.57
2155 2294 0.906775 CGGGGCCTTTTCCACTACTA 59.093 55.000 0.84 0.00 0.00 1.82
2156 2295 1.134491 CGGGGCCTTTTCCACTACTAG 60.134 57.143 0.84 0.00 0.00 2.57
2157 2296 1.212195 GGGGCCTTTTCCACTACTAGG 59.788 57.143 0.84 0.00 0.00 3.02
2158 2297 1.914108 GGGCCTTTTCCACTACTAGGT 59.086 52.381 0.84 0.00 0.00 3.08
2159 2298 2.307980 GGGCCTTTTCCACTACTAGGTT 59.692 50.000 0.84 0.00 0.00 3.50
2160 2299 3.245158 GGGCCTTTTCCACTACTAGGTTT 60.245 47.826 0.84 0.00 0.00 3.27
2161 2300 4.404640 GGCCTTTTCCACTACTAGGTTTT 58.595 43.478 0.00 0.00 0.00 2.43
2205 2344 7.428282 TCAAACCTTTTTGACCAACTTTTTC 57.572 32.000 0.00 0.00 45.08 2.29
2206 2345 6.992715 TCAAACCTTTTTGACCAACTTTTTCA 59.007 30.769 0.00 0.00 45.08 2.69
2208 2347 5.242434 ACCTTTTTGACCAACTTTTTCACC 58.758 37.500 0.00 0.00 0.00 4.02
2209 2348 4.328712 CCTTTTTGACCAACTTTTTCACCG 59.671 41.667 0.00 0.00 0.00 4.94
2210 2349 4.522722 TTTTGACCAACTTTTTCACCGT 57.477 36.364 0.00 0.00 0.00 4.83
2211 2350 3.495670 TTGACCAACTTTTTCACCGTG 57.504 42.857 0.00 0.00 0.00 4.94
2212 2351 2.438411 TGACCAACTTTTTCACCGTGT 58.562 42.857 0.00 0.00 0.00 4.49
2213 2352 2.420722 TGACCAACTTTTTCACCGTGTC 59.579 45.455 0.00 0.00 0.00 3.67
2215 2354 3.086282 ACCAACTTTTTCACCGTGTCTT 58.914 40.909 0.00 0.00 0.00 3.01
2226 2365 0.676466 CCGTGTCTTGCCTATGCCAA 60.676 55.000 0.00 0.00 36.33 4.52
2227 2366 1.164411 CGTGTCTTGCCTATGCCAAA 58.836 50.000 0.00 0.00 36.33 3.28
2228 2367 1.539388 CGTGTCTTGCCTATGCCAAAA 59.461 47.619 0.00 0.00 36.33 2.44
2229 2368 2.668279 CGTGTCTTGCCTATGCCAAAAC 60.668 50.000 0.00 0.00 36.33 2.43
2234 2373 3.386078 TCTTGCCTATGCCAAAACAAACA 59.614 39.130 0.00 0.00 36.33 2.83
2242 2381 6.259608 CCTATGCCAAAACAAACAAAACATGA 59.740 34.615 0.00 0.00 0.00 3.07
2243 2382 5.542616 TGCCAAAACAAACAAAACATGAG 57.457 34.783 0.00 0.00 0.00 2.90
2338 2477 1.507141 CCCAAAGACGAACGCTTGCT 61.507 55.000 0.00 0.00 0.00 3.91
2345 2484 4.135493 GAACGCTTGCTCGACGGC 62.135 66.667 0.00 0.00 0.00 5.68
2404 2555 1.501741 CGGAAGGCACGGACAATTG 59.498 57.895 3.24 3.24 0.00 2.32
2575 2746 1.075896 GAACCACCACCCCAACCAA 60.076 57.895 0.00 0.00 0.00 3.67
2576 2747 0.471022 GAACCACCACCCCAACCAAT 60.471 55.000 0.00 0.00 0.00 3.16
2577 2748 0.030603 AACCACCACCCCAACCAATT 60.031 50.000 0.00 0.00 0.00 2.32
2578 2749 0.030603 ACCACCACCCCAACCAATTT 60.031 50.000 0.00 0.00 0.00 1.82
2579 2750 0.684535 CCACCACCCCAACCAATTTC 59.315 55.000 0.00 0.00 0.00 2.17
2580 2751 0.316841 CACCACCCCAACCAATTTCG 59.683 55.000 0.00 0.00 0.00 3.46
2648 2823 2.673368 CACCACCTTTTCATACTCGCTC 59.327 50.000 0.00 0.00 0.00 5.03
2704 2883 1.067706 TGTGGCCGAAAGATGCAAATG 60.068 47.619 0.00 0.00 0.00 2.32
2705 2884 1.202114 GTGGCCGAAAGATGCAAATGA 59.798 47.619 0.00 0.00 0.00 2.57
2721 4475 4.070716 CAAATGATGATGAGTAGAGGGGC 58.929 47.826 0.00 0.00 0.00 5.80
2838 4597 0.462047 CAGGGTACGTGGATGGCTTC 60.462 60.000 0.00 0.00 40.97 3.86
2922 4694 2.279851 GCGGGTTTTGGGTTGCAC 60.280 61.111 0.00 0.00 0.00 4.57
2983 4778 1.896660 CACCACCACCGTTTCTGGG 60.897 63.158 0.00 0.00 32.45 4.45
3115 4923 1.207593 GTGGCAGTGTCACGAATGC 59.792 57.895 12.91 7.06 37.95 3.56
3118 4926 1.207593 GCAGTGTCACGAATGCACC 59.792 57.895 10.03 0.00 38.54 5.01
3120 4928 0.514255 CAGTGTCACGAATGCACCAG 59.486 55.000 0.00 0.00 35.00 4.00
3178 5090 1.370900 CGCTGAGCAAACTTGTGGC 60.371 57.895 4.88 0.00 0.00 5.01
3242 5164 0.806868 ACGGACGATTAACTGCGAGA 59.193 50.000 0.00 0.00 0.00 4.04
3320 5249 2.336809 GCGCTCCCAGATCTACCG 59.663 66.667 0.00 0.00 0.00 4.02
3428 5357 1.527034 CATGCCCACGGGAATCTATG 58.473 55.000 6.21 0.00 37.50 2.23
3430 5359 1.600916 GCCCACGGGAATCTATGGC 60.601 63.158 6.21 0.00 37.50 4.40
3447 5376 1.011968 GGCCGCCCGTTTCAAATTTC 61.012 55.000 0.00 0.00 0.00 2.17
3496 5425 7.840342 AGAAAATTACTGTATGAGCACTCAG 57.160 36.000 6.50 0.00 43.61 3.35
3722 5665 1.135803 CCCAATGGTTAGCACGAAACG 60.136 52.381 0.00 0.00 0.00 3.60
3766 5710 8.578151 AGGAACGTATTTAAAAGGCAAACATTA 58.422 29.630 0.00 0.00 0.00 1.90
3798 5742 2.731217 AGCACATTTCTGAAAACGTGC 58.269 42.857 32.30 32.30 46.11 5.34
4244 6221 7.279758 TGAACCAAAATTGAAAACAGGAACATC 59.720 33.333 0.00 0.00 0.00 3.06
4729 6846 6.425577 TCCAATAGGAATTTCCGTTTAACG 57.574 37.500 10.83 10.83 42.75 3.18
4730 6847 5.032220 CCAATAGGAATTTCCGTTTAACGC 58.968 41.667 12.41 0.00 42.75 4.84
4731 6848 2.886587 AGGAATTTCCGTTTAACGCG 57.113 45.000 12.41 3.53 42.75 6.01
4732 6849 2.415776 AGGAATTTCCGTTTAACGCGA 58.584 42.857 15.93 8.15 42.75 5.87
4733 6850 2.158254 AGGAATTTCCGTTTAACGCGAC 59.842 45.455 15.93 0.00 42.75 5.19
4734 6851 2.152693 GAATTTCCGTTTAACGCGACG 58.847 47.619 15.93 12.75 40.91 5.12
4735 6852 0.179243 ATTTCCGTTTAACGCGACGC 60.179 50.000 15.93 10.49 40.91 5.19
4736 6853 1.214373 TTTCCGTTTAACGCGACGCT 61.214 50.000 15.93 2.07 40.91 5.07
4737 6854 1.214373 TTCCGTTTAACGCGACGCTT 61.214 50.000 15.93 13.20 40.91 4.68
4738 6855 1.202320 CCGTTTAACGCGACGCTTT 59.798 52.632 15.93 17.47 40.91 3.51
4739 6856 0.383368 CCGTTTAACGCGACGCTTTT 60.383 50.000 17.05 12.26 40.91 2.27
4740 6857 0.688023 CGTTTAACGCGACGCTTTTG 59.312 50.000 17.05 3.80 33.65 2.44
4968 7085 1.654954 CTACACCTGGTCCGTCTCCG 61.655 65.000 0.00 0.00 0.00 4.63
5096 7213 3.656045 GTGTTCAACACCCGGCCG 61.656 66.667 21.04 21.04 43.05 6.13
5097 7214 4.178169 TGTTCAACACCCGGCCGT 62.178 61.111 26.12 2.55 0.00 5.68
5100 7217 4.939368 TCAACACCCGGCCGTTGG 62.939 66.667 26.12 21.57 42.22 3.77
5150 7267 1.372087 CCATGTTCTTCCTCAGCCGC 61.372 60.000 0.00 0.00 0.00 6.53
5201 7318 3.188965 GAGTACTCGAGGCACGCT 58.811 61.111 18.41 6.77 42.26 5.07
5290 7407 0.984230 TTCGCTCCCAAGATGAACCT 59.016 50.000 0.00 0.00 0.00 3.50
5291 7408 0.537188 TCGCTCCCAAGATGAACCTC 59.463 55.000 0.00 0.00 0.00 3.85
5311 7428 1.528161 CAACGAGTGGAAACGGGTAAC 59.472 52.381 0.00 0.00 0.00 2.50
5346 7464 5.370679 AGCTCATTGTTTTCATGGCTTTTT 58.629 33.333 0.00 0.00 0.00 1.94
5374 7492 1.079197 ATGCGCATCTCCGTGTTGA 60.079 52.632 19.28 0.00 0.00 3.18
5380 7498 2.285026 CGCATCTCCGTGTTGATTTACG 60.285 50.000 0.00 0.00 39.83 3.18
5502 7620 4.459089 GGAGAGCTCACCACGCCC 62.459 72.222 23.63 5.67 0.00 6.13
5577 7698 6.998802 AGAGTAGGATGTTGATATTGGTAGC 58.001 40.000 0.00 0.00 0.00 3.58
5579 7700 4.955811 AGGATGTTGATATTGGTAGCGA 57.044 40.909 0.00 0.00 0.00 4.93
5620 7741 3.627237 GCAAAGGTGAATAATCCCCTCCA 60.627 47.826 0.00 0.00 0.00 3.86
5669 7790 1.493022 TCCCAAACCAGCAGTACTTGT 59.507 47.619 0.00 0.00 0.00 3.16
5683 7804 6.205464 AGCAGTACTTGTTAACACGTAGACTA 59.795 38.462 21.43 3.33 32.36 2.59
5715 7836 1.166531 GGTGCTGGGCAATATCGTCC 61.167 60.000 0.00 0.00 41.47 4.79
5741 7862 4.282957 AGTGTGTCCAGATGGCTATATGAG 59.717 45.833 6.22 0.00 34.44 2.90
5748 7869 4.807834 CCAGATGGCTATATGAGTTATGCG 59.192 45.833 6.22 0.00 0.00 4.73
5749 7870 5.394553 CCAGATGGCTATATGAGTTATGCGA 60.395 44.000 6.22 0.00 0.00 5.10
5750 7871 5.518128 CAGATGGCTATATGAGTTATGCGAC 59.482 44.000 0.00 0.00 0.00 5.19
5751 7872 4.864704 TGGCTATATGAGTTATGCGACA 57.135 40.909 0.00 0.00 0.00 4.35
5752 7873 4.809673 TGGCTATATGAGTTATGCGACAG 58.190 43.478 0.00 0.00 0.00 3.51
5753 7874 4.522789 TGGCTATATGAGTTATGCGACAGA 59.477 41.667 0.00 0.00 0.00 3.41
5754 7875 4.859798 GGCTATATGAGTTATGCGACAGAC 59.140 45.833 0.00 0.00 0.00 3.51
5755 7876 5.461526 GCTATATGAGTTATGCGACAGACA 58.538 41.667 0.00 0.00 0.00 3.41
5863 7985 4.563786 CCTCTTTCTTGGTTCTCTGGTACC 60.564 50.000 4.43 4.43 34.11 3.34
5880 8002 2.579207 ACCGATGTGATTCTACCGTG 57.421 50.000 0.00 0.00 0.00 4.94
5885 8007 3.677700 CGATGTGATTCTACCGTGGGAAA 60.678 47.826 0.00 0.00 0.00 3.13
5896 8018 1.336795 CCGTGGGAAAATGGCTGTTTC 60.337 52.381 5.28 5.28 34.79 2.78
5957 8079 3.581332 AGGGACGTGTATTTTTCTGGAGA 59.419 43.478 0.00 0.00 0.00 3.71
5989 8111 1.975407 GCTTGTGCTCCATGGTGCT 60.975 57.895 32.44 0.00 35.85 4.40
5993 8115 2.042831 GTGCTCCATGGTGCTGGAC 61.043 63.158 32.44 21.68 40.43 4.02
6040 8170 0.976073 GGGACCCTGAGACCGAATGA 60.976 60.000 2.09 0.00 0.00 2.57
6056 8186 4.746836 GAATGAGTCGATCGAACTGAAC 57.253 45.455 21.31 6.84 0.00 3.18
6057 8187 3.850122 ATGAGTCGATCGAACTGAACA 57.150 42.857 21.31 13.14 0.00 3.18
6058 8188 3.850122 TGAGTCGATCGAACTGAACAT 57.150 42.857 21.31 0.00 0.00 2.71
6059 8189 4.174411 TGAGTCGATCGAACTGAACATT 57.826 40.909 21.31 0.00 0.00 2.71
6060 8190 4.556233 TGAGTCGATCGAACTGAACATTT 58.444 39.130 21.31 0.00 0.00 2.32
6061 8191 4.988540 TGAGTCGATCGAACTGAACATTTT 59.011 37.500 21.31 0.00 0.00 1.82
6062 8192 5.118664 TGAGTCGATCGAACTGAACATTTTC 59.881 40.000 21.31 2.21 0.00 2.29
6063 8193 4.090066 AGTCGATCGAACTGAACATTTTCG 59.910 41.667 21.31 10.44 42.75 3.46
6064 8194 3.985279 TCGATCGAACTGAACATTTTCGT 59.015 39.130 16.99 6.27 42.17 3.85
6065 8195 4.089493 TCGATCGAACTGAACATTTTCGTC 59.911 41.667 16.99 11.19 42.17 4.20
6066 8196 4.638963 GATCGAACTGAACATTTTCGTCC 58.361 43.478 14.04 7.40 42.17 4.79
6067 8197 2.473609 TCGAACTGAACATTTTCGTCCG 59.526 45.455 14.04 0.00 42.17 4.79
6068 8198 2.411031 CGAACTGAACATTTTCGTCCGG 60.411 50.000 0.00 0.00 37.84 5.14
6069 8199 2.249844 ACTGAACATTTTCGTCCGGT 57.750 45.000 0.00 0.00 34.04 5.28
6070 8200 3.389925 ACTGAACATTTTCGTCCGGTA 57.610 42.857 0.00 0.00 34.04 4.02
6071 8201 3.062042 ACTGAACATTTTCGTCCGGTAC 58.938 45.455 0.00 0.00 34.04 3.34
6084 8214 3.166394 GGTACGATCCCCACCCCC 61.166 72.222 0.00 0.00 0.00 5.40
6085 8215 3.543641 GTACGATCCCCACCCCCG 61.544 72.222 0.00 0.00 0.00 5.73
6100 8230 4.394712 CCGCGCTCCTGAACCCTT 62.395 66.667 5.56 0.00 0.00 3.95
6101 8231 3.121030 CGCGCTCCTGAACCCTTG 61.121 66.667 5.56 0.00 0.00 3.61
6102 8232 3.435186 GCGCTCCTGAACCCTTGC 61.435 66.667 0.00 0.00 0.00 4.01
6103 8233 2.348998 CGCTCCTGAACCCTTGCT 59.651 61.111 0.00 0.00 0.00 3.91
6104 8234 1.596934 CGCTCCTGAACCCTTGCTA 59.403 57.895 0.00 0.00 0.00 3.49
6121 8626 1.790623 GCTAACGAAACGTCTCTTGCA 59.209 47.619 0.00 0.00 39.99 4.08
6122 8627 2.409879 GCTAACGAAACGTCTCTTGCAC 60.410 50.000 0.00 0.00 39.99 4.57
6139 8644 4.592485 TGCACGAACAAAATAAATGGGT 57.408 36.364 0.00 0.00 0.00 4.51
6182 8687 4.790765 AAAAAGAACAAGATAGCCAGCC 57.209 40.909 0.00 0.00 0.00 4.85
6220 8726 2.704725 AGCCATTGCGTACAAAACAG 57.295 45.000 0.00 0.00 44.33 3.16
6227 8733 0.879090 GCGTACAAAACAGAAGGGGG 59.121 55.000 0.00 0.00 0.00 5.40
6366 8873 8.065473 TGCCATAATTTTGTACAACAGATGAT 57.935 30.769 8.07 0.00 0.00 2.45
6367 8874 8.530311 TGCCATAATTTTGTACAACAGATGATT 58.470 29.630 8.07 5.09 0.00 2.57
6393 8900 7.810766 TTTCTCAAAAATATTGCCAATCGAC 57.189 32.000 0.00 0.00 0.00 4.20
6399 8906 8.181573 TCAAAAATATTGCCAATCGACTAGAAC 58.818 33.333 0.00 0.00 0.00 3.01
6401 8908 7.624360 AAATATTGCCAATCGACTAGAACAA 57.376 32.000 0.00 0.00 0.00 2.83
6402 8909 7.807977 AATATTGCCAATCGACTAGAACAAT 57.192 32.000 0.00 0.00 0.00 2.71
6404 8911 8.902540 ATATTGCCAATCGACTAGAACAATTA 57.097 30.769 0.00 0.00 0.00 1.40
6504 9011 9.911138 AAAACATGGAAAAATAAATTGCATTCC 57.089 25.926 4.79 4.79 36.81 3.01
6505 9012 7.628769 ACATGGAAAAATAAATTGCATTCCC 57.371 32.000 8.57 0.00 36.81 3.97
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
4 5 2.126031 GTCGCGTCTCCAGGAACC 60.126 66.667 5.77 0.00 0.00 3.62
5 6 1.444553 CAGTCGCGTCTCCAGGAAC 60.445 63.158 5.77 0.00 0.00 3.62
6 7 2.636412 CCAGTCGCGTCTCCAGGAA 61.636 63.158 5.77 0.00 0.00 3.36
7 8 3.062466 CCAGTCGCGTCTCCAGGA 61.062 66.667 5.77 0.00 0.00 3.86
8 9 4.135153 CCCAGTCGCGTCTCCAGG 62.135 72.222 5.77 3.44 0.00 4.45
9 10 4.803426 GCCCAGTCGCGTCTCCAG 62.803 72.222 5.77 0.00 0.00 3.86
15 16 4.922026 AAAACGGCCCAGTCGCGT 62.922 61.111 5.77 0.00 32.11 6.01
16 17 3.656045 AAAAACGGCCCAGTCGCG 61.656 61.111 0.00 0.00 32.11 5.87
31 32 2.795175 TTTTATGCCGGCGTCAAAAA 57.205 40.000 27.77 23.25 0.00 1.94
32 33 2.795175 TTTTTATGCCGGCGTCAAAA 57.205 40.000 28.47 28.47 0.00 2.44
50 51 4.998033 GGAAGACCTTCTCAGACGATTTTT 59.002 41.667 9.35 0.00 39.45 1.94
51 52 4.284746 AGGAAGACCTTCTCAGACGATTTT 59.715 41.667 9.35 0.00 45.36 1.82
52 53 3.835395 AGGAAGACCTTCTCAGACGATTT 59.165 43.478 9.35 0.00 45.36 2.17
53 54 3.436243 AGGAAGACCTTCTCAGACGATT 58.564 45.455 9.35 0.00 45.36 3.34
54 55 3.094484 AGGAAGACCTTCTCAGACGAT 57.906 47.619 9.35 0.00 45.36 3.73
55 56 2.588464 AGGAAGACCTTCTCAGACGA 57.412 50.000 9.35 0.00 45.36 4.20
56 57 4.381079 CCTTTAGGAAGACCTTCTCAGACG 60.381 50.000 9.35 0.00 45.36 4.18
57 58 4.621983 GCCTTTAGGAAGACCTTCTCAGAC 60.622 50.000 9.35 0.00 45.36 3.51
58 59 3.515901 GCCTTTAGGAAGACCTTCTCAGA 59.484 47.826 9.35 0.00 45.36 3.27
59 60 3.677424 CGCCTTTAGGAAGACCTTCTCAG 60.677 52.174 9.35 1.93 45.36 3.35
60 61 2.233922 CGCCTTTAGGAAGACCTTCTCA 59.766 50.000 9.35 0.00 45.36 3.27
61 62 2.894902 CGCCTTTAGGAAGACCTTCTC 58.105 52.381 9.35 1.09 45.36 2.87
62 63 1.066071 GCGCCTTTAGGAAGACCTTCT 60.066 52.381 0.00 0.00 45.36 2.85
63 64 1.370609 GCGCCTTTAGGAAGACCTTC 58.629 55.000 0.00 1.27 45.36 3.46
64 65 0.391263 CGCGCCTTTAGGAAGACCTT 60.391 55.000 0.00 0.00 45.36 3.50
66 67 1.814169 CCGCGCCTTTAGGAAGACC 60.814 63.158 0.00 0.00 37.39 3.85
67 68 2.461945 GCCGCGCCTTTAGGAAGAC 61.462 63.158 0.00 0.00 37.39 3.01
68 69 2.125269 GCCGCGCCTTTAGGAAGA 60.125 61.111 0.00 0.00 37.39 2.87
69 70 2.125106 AGCCGCGCCTTTAGGAAG 60.125 61.111 0.00 0.00 37.39 3.46
70 71 2.435938 CAGCCGCGCCTTTAGGAA 60.436 61.111 0.00 0.00 37.39 3.36
71 72 2.852495 CTTCAGCCGCGCCTTTAGGA 62.852 60.000 0.00 0.00 37.39 2.94
72 73 2.435938 TTCAGCCGCGCCTTTAGG 60.436 61.111 0.00 0.00 38.53 2.69
73 74 0.811616 ATCTTCAGCCGCGCCTTTAG 60.812 55.000 0.00 0.00 0.00 1.85
74 75 1.089481 CATCTTCAGCCGCGCCTTTA 61.089 55.000 0.00 0.00 0.00 1.85
75 76 2.045926 ATCTTCAGCCGCGCCTTT 60.046 55.556 0.00 0.00 0.00 3.11
76 77 2.821366 CATCTTCAGCCGCGCCTT 60.821 61.111 0.00 0.00 0.00 4.35
84 85 2.049888 AAGCTTAGGGCATCTTCAGC 57.950 50.000 0.00 0.00 44.79 4.26
85 86 2.686915 CCAAAGCTTAGGGCATCTTCAG 59.313 50.000 0.00 0.00 44.79 3.02
86 87 2.308570 TCCAAAGCTTAGGGCATCTTCA 59.691 45.455 11.33 0.00 44.79 3.02
87 88 2.948315 CTCCAAAGCTTAGGGCATCTTC 59.052 50.000 11.33 0.00 44.79 2.87
88 89 2.578021 TCTCCAAAGCTTAGGGCATCTT 59.422 45.455 11.33 0.00 44.79 2.40
89 90 2.092699 GTCTCCAAAGCTTAGGGCATCT 60.093 50.000 11.33 0.00 44.79 2.90
90 91 2.293170 GTCTCCAAAGCTTAGGGCATC 58.707 52.381 11.33 2.29 44.79 3.91
91 92 1.407437 CGTCTCCAAAGCTTAGGGCAT 60.407 52.381 11.33 0.00 44.79 4.40
92 93 0.036388 CGTCTCCAAAGCTTAGGGCA 60.036 55.000 11.33 0.00 44.79 5.36
93 94 1.369839 GCGTCTCCAAAGCTTAGGGC 61.370 60.000 11.33 4.60 42.19 5.19
94 95 0.744771 GGCGTCTCCAAAGCTTAGGG 60.745 60.000 0.00 4.91 32.38 3.53
95 96 0.250513 AGGCGTCTCCAAAGCTTAGG 59.749 55.000 0.00 0.00 37.29 2.69
96 97 1.646189 GAGGCGTCTCCAAAGCTTAG 58.354 55.000 5.50 0.00 37.29 2.18
185 186 1.596954 CCGCTTCAAACTTTCCACACG 60.597 52.381 0.00 0.00 0.00 4.49
202 203 0.867753 CGCTGTCTGTGATAGTCCGC 60.868 60.000 0.00 0.00 0.00 5.54
206 207 4.021894 AGTTTTCTCGCTGTCTGTGATAGT 60.022 41.667 0.00 0.00 34.35 2.12
208 209 4.521130 AGTTTTCTCGCTGTCTGTGATA 57.479 40.909 0.00 0.00 34.35 2.15
210 211 2.866156 CAAGTTTTCTCGCTGTCTGTGA 59.134 45.455 0.00 0.00 0.00 3.58
215 216 0.238553 GGCCAAGTTTTCTCGCTGTC 59.761 55.000 0.00 0.00 0.00 3.51
216 217 0.465460 TGGCCAAGTTTTCTCGCTGT 60.465 50.000 0.61 0.00 0.00 4.40
219 220 0.109132 CCATGGCCAAGTTTTCTCGC 60.109 55.000 10.96 0.00 0.00 5.03
221 222 1.203287 GAGCCATGGCCAAGTTTTCTC 59.797 52.381 33.14 16.58 43.17 2.87
222 223 1.260544 GAGCCATGGCCAAGTTTTCT 58.739 50.000 33.14 11.40 43.17 2.52
254 256 2.591429 CGCCGGGCAATCATAGCA 60.591 61.111 20.71 0.00 0.00 3.49
281 283 4.373116 GAGCAGTTCGGTGGCGGA 62.373 66.667 0.00 0.00 0.00 5.54
290 292 2.375766 CGTCGTGGCAGAGCAGTTC 61.376 63.158 0.00 0.00 0.00 3.01
332 334 2.125952 GGCAGCATCAAAACCGGC 60.126 61.111 0.00 0.00 0.00 6.13
336 338 0.449388 CCTCTCGGCAGCATCAAAAC 59.551 55.000 0.00 0.00 0.00 2.43
350 352 2.891112 CATCTGCTGTGTTCTCCTCTC 58.109 52.381 0.00 0.00 0.00 3.20
351 353 1.066286 GCATCTGCTGTGTTCTCCTCT 60.066 52.381 0.00 0.00 38.21 3.69
352 354 1.367659 GCATCTGCTGTGTTCTCCTC 58.632 55.000 0.00 0.00 38.21 3.71
353 355 0.035630 GGCATCTGCTGTGTTCTCCT 60.036 55.000 1.70 0.00 41.70 3.69
354 356 1.028868 GGGCATCTGCTGTGTTCTCC 61.029 60.000 1.70 0.00 41.70 3.71
388 390 0.027716 CGAGTCGACGACCACTATGG 59.972 60.000 23.76 3.20 45.02 2.74
389 391 0.589229 GCGAGTCGACGACCACTATG 60.589 60.000 23.76 8.97 32.18 2.23
390 392 1.720301 GCGAGTCGACGACCACTAT 59.280 57.895 23.76 5.33 32.18 2.12
391 393 2.733671 CGCGAGTCGACGACCACTA 61.734 63.158 23.76 0.00 41.67 2.74
392 394 4.086178 CGCGAGTCGACGACCACT 62.086 66.667 23.76 6.13 41.67 4.00
416 431 2.178912 TGAACCCTCATCCGTTCAAC 57.821 50.000 0.36 0.00 43.97 3.18
418 433 0.037697 CGTGAACCCTCATCCGTTCA 60.038 55.000 0.00 0.00 44.55 3.18
420 435 1.375523 GCGTGAACCCTCATCCGTT 60.376 57.895 0.00 0.00 33.05 4.44
421 436 2.264794 GCGTGAACCCTCATCCGT 59.735 61.111 0.00 0.00 33.05 4.69
445 460 7.201866 CCATGTTACCCAATCATCCGATAAAAA 60.202 37.037 0.00 0.00 0.00 1.94
461 476 2.525368 ACCTTCTTTGCCATGTTACCC 58.475 47.619 0.00 0.00 0.00 3.69
497 512 1.607628 GTACGTGGCTGAGACCGATAT 59.392 52.381 0.00 0.00 0.00 1.63
498 513 1.019673 GTACGTGGCTGAGACCGATA 58.980 55.000 0.00 0.00 0.00 2.92
499 514 1.664321 GGTACGTGGCTGAGACCGAT 61.664 60.000 0.00 0.00 0.00 4.18
500 515 2.338015 GGTACGTGGCTGAGACCGA 61.338 63.158 0.00 0.00 0.00 4.69
501 516 2.181021 GGTACGTGGCTGAGACCG 59.819 66.667 0.00 0.00 0.00 4.79
503 518 1.446272 GCTGGTACGTGGCTGAGAC 60.446 63.158 0.00 0.00 0.00 3.36
504 519 2.646175 GGCTGGTACGTGGCTGAGA 61.646 63.158 0.00 0.00 0.00 3.27
505 520 1.320344 TAGGCTGGTACGTGGCTGAG 61.320 60.000 18.43 0.23 40.01 3.35
506 521 0.901114 TTAGGCTGGTACGTGGCTGA 60.901 55.000 18.43 10.58 40.01 4.26
507 522 0.178068 ATTAGGCTGGTACGTGGCTG 59.822 55.000 18.43 0.00 40.01 4.85
508 523 1.411612 GTATTAGGCTGGTACGTGGCT 59.588 52.381 15.01 15.01 42.03 4.75
548 574 0.322546 GACCTCTGCGGGTTTGGAAT 60.323 55.000 0.00 0.00 40.06 3.01
565 591 0.933509 GCCGGATGTATGTCGACGAC 60.934 60.000 20.97 20.97 0.00 4.34
574 600 2.799126 TTTGTCCTTGCCGGATGTAT 57.201 45.000 5.05 0.00 45.44 2.29
575 601 2.570415 TTTTGTCCTTGCCGGATGTA 57.430 45.000 5.05 0.00 45.44 2.29
576 602 1.613437 CTTTTTGTCCTTGCCGGATGT 59.387 47.619 5.05 0.00 45.44 3.06
577 603 1.067635 CCTTTTTGTCCTTGCCGGATG 60.068 52.381 5.05 0.00 45.44 3.51
583 609 0.660300 CGCGTCCTTTTTGTCCTTGC 60.660 55.000 0.00 0.00 0.00 4.01
602 628 2.125633 GGTTCCGACGCCTCCTTC 60.126 66.667 0.00 0.00 0.00 3.46
618 644 0.820891 CGCCTTTGAGATGGATGGGG 60.821 60.000 0.00 0.00 0.00 4.96
620 646 1.139654 TCTCGCCTTTGAGATGGATGG 59.860 52.381 0.00 0.00 40.01 3.51
623 649 0.176680 GCTCTCGCCTTTGAGATGGA 59.823 55.000 0.00 0.00 43.69 3.41
625 651 1.150567 CCGCTCTCGCCTTTGAGATG 61.151 60.000 0.00 0.00 43.69 2.90
626 652 1.142748 CCGCTCTCGCCTTTGAGAT 59.857 57.895 0.00 0.00 43.69 2.75
627 653 2.573869 CCGCTCTCGCCTTTGAGA 59.426 61.111 0.00 0.00 42.56 3.27
629 655 4.760047 GGCCGCTCTCGCCTTTGA 62.760 66.667 0.00 0.00 0.00 2.69
665 734 7.607250 TGGGCGTATTTGTATTTGATTCTTTT 58.393 30.769 0.00 0.00 0.00 2.27
672 742 8.240682 GCATATAATGGGCGTATTTGTATTTGA 58.759 33.333 0.00 0.00 0.00 2.69
673 743 8.026026 TGCATATAATGGGCGTATTTGTATTTG 58.974 33.333 0.00 0.00 0.00 2.32
676 746 7.109501 TCTGCATATAATGGGCGTATTTGTAT 58.890 34.615 0.00 0.00 0.00 2.29
692 779 4.096532 GTGCCTACGCTATCTCTGCATATA 59.903 45.833 0.00 0.00 35.36 0.86
698 785 1.000827 CTGGTGCCTACGCTATCTCTG 60.001 57.143 0.00 0.00 35.36 3.35
699 786 1.323412 CTGGTGCCTACGCTATCTCT 58.677 55.000 0.00 0.00 35.36 3.10
700 787 0.315568 CCTGGTGCCTACGCTATCTC 59.684 60.000 0.00 0.00 35.36 2.75
731 824 4.201679 CGCGCTGGATACGGGACA 62.202 66.667 5.56 0.00 45.25 4.02
756 849 1.402325 GGTAGCAACCGGAATTTGTGC 60.402 52.381 9.46 7.67 35.62 4.57
767 864 3.746045 TTATCGGAGATGGTAGCAACC 57.254 47.619 0.00 2.49 45.12 3.77
768 865 7.907214 ATAATTTATCGGAGATGGTAGCAAC 57.093 36.000 0.00 0.00 45.12 4.17
863 966 7.416777 GGGAAATCAAACAATTATGGGAGAGAC 60.417 40.741 0.00 0.00 0.00 3.36
1104 1224 3.753070 GACGTAGGCGAGGAAGGCG 62.753 68.421 0.00 0.00 42.00 5.52
1964 2088 7.728847 AAAAGGGTTTTGATTCAAACATAGC 57.271 32.000 11.30 7.06 32.79 2.97
2131 2260 1.921346 TGGAAAAGGCCCCGAGCTA 60.921 57.895 0.00 0.00 43.05 3.32
2137 2266 1.212195 CCTAGTAGTGGAAAAGGCCCC 59.788 57.143 0.00 0.00 0.00 5.80
2139 2268 3.715638 AACCTAGTAGTGGAAAAGGCC 57.284 47.619 0.00 0.00 0.00 5.19
2147 2286 5.817816 CCTATGCAGAAAAACCTAGTAGTGG 59.182 44.000 0.00 0.00 0.00 4.00
2153 2292 2.614057 CGGCCTATGCAGAAAAACCTAG 59.386 50.000 0.00 0.00 40.13 3.02
2154 2293 2.639065 CGGCCTATGCAGAAAAACCTA 58.361 47.619 0.00 0.00 40.13 3.08
2155 2294 1.463674 CGGCCTATGCAGAAAAACCT 58.536 50.000 0.00 0.00 40.13 3.50
2156 2295 0.179137 GCGGCCTATGCAGAAAAACC 60.179 55.000 0.00 0.00 40.13 3.27
2157 2296 0.811281 AGCGGCCTATGCAGAAAAAC 59.189 50.000 0.00 0.00 40.13 2.43
2158 2297 0.810648 CAGCGGCCTATGCAGAAAAA 59.189 50.000 0.00 0.00 40.13 1.94
2159 2298 1.031571 CCAGCGGCCTATGCAGAAAA 61.032 55.000 0.00 0.00 40.13 2.29
2160 2299 1.451927 CCAGCGGCCTATGCAGAAA 60.452 57.895 0.00 0.00 40.13 2.52
2161 2300 1.909459 TTCCAGCGGCCTATGCAGAA 61.909 55.000 0.00 1.88 40.13 3.02
2204 2343 0.391130 GCATAGGCAAGACACGGTGA 60.391 55.000 16.29 0.00 40.72 4.02
2205 2344 1.369091 GGCATAGGCAAGACACGGTG 61.369 60.000 6.58 6.58 43.71 4.94
2206 2345 1.078426 GGCATAGGCAAGACACGGT 60.078 57.895 0.15 0.00 43.71 4.83
2208 2347 2.853159 TTGGCATAGGCAAGACACG 58.147 52.632 0.15 0.00 42.98 4.49
2215 2354 3.827008 TTGTTTGTTTTGGCATAGGCA 57.173 38.095 0.15 0.00 43.71 4.75
2226 2365 5.964758 TCTGCTCTCATGTTTTGTTTGTTT 58.035 33.333 0.00 0.00 0.00 2.83
2227 2366 5.581126 TCTGCTCTCATGTTTTGTTTGTT 57.419 34.783 0.00 0.00 0.00 2.83
2228 2367 5.357878 TCTTCTGCTCTCATGTTTTGTTTGT 59.642 36.000 0.00 0.00 0.00 2.83
2229 2368 5.824429 TCTTCTGCTCTCATGTTTTGTTTG 58.176 37.500 0.00 0.00 0.00 2.93
2234 2373 5.045724 AGGAGATCTTCTGCTCTCATGTTTT 60.046 40.000 1.52 0.00 41.57 2.43
2242 2381 6.183360 CCAAAAGATAGGAGATCTTCTGCTCT 60.183 42.308 14.31 12.16 41.57 4.09
2243 2382 5.990996 CCAAAAGATAGGAGATCTTCTGCTC 59.009 44.000 14.31 10.12 41.57 4.26
2320 2459 0.110644 GAGCAAGCGTTCGTCTTTGG 60.111 55.000 0.00 0.00 0.00 3.28
2338 2477 1.832719 TTCCATGAAAGGGCCGTCGA 61.833 55.000 0.00 0.00 37.98 4.20
2345 2484 5.667466 CTTCCATTGATTTCCATGAAAGGG 58.333 41.667 0.00 0.00 40.85 3.95
2392 2543 1.467342 GTACCTTCCAATTGTCCGTGC 59.533 52.381 4.43 0.00 0.00 5.34
2404 2555 1.737793 CACGCTGGAATTGTACCTTCC 59.262 52.381 14.48 14.48 42.15 3.46
2575 2746 0.958876 GGGGGCTGTCGTTTCGAAAT 60.959 55.000 14.69 0.00 37.72 2.17
2576 2747 1.598685 GGGGGCTGTCGTTTCGAAA 60.599 57.895 6.47 6.47 37.72 3.46
2577 2748 2.031465 GGGGGCTGTCGTTTCGAA 59.969 61.111 0.00 0.00 37.72 3.71
2578 2749 4.367023 CGGGGGCTGTCGTTTCGA 62.367 66.667 0.00 0.00 0.00 3.71
2579 2750 4.675029 ACGGGGGCTGTCGTTTCG 62.675 66.667 0.00 0.00 36.04 3.46
2580 2751 2.741211 GACGGGGGCTGTCGTTTC 60.741 66.667 0.00 0.00 39.88 2.78
2623 2794 0.170339 GTATGAAAAGGTGGTGCGGC 59.830 55.000 0.00 0.00 0.00 6.53
2624 2795 1.737793 GAGTATGAAAAGGTGGTGCGG 59.262 52.381 0.00 0.00 0.00 5.69
2625 2796 1.393539 CGAGTATGAAAAGGTGGTGCG 59.606 52.381 0.00 0.00 0.00 5.34
2631 2802 1.067142 TGCGAGCGAGTATGAAAAGGT 60.067 47.619 0.00 0.00 0.00 3.50
2704 2883 1.000283 CGTGCCCCTCTACTCATCATC 60.000 57.143 0.00 0.00 0.00 2.92
2705 2884 1.043816 CGTGCCCCTCTACTCATCAT 58.956 55.000 0.00 0.00 0.00 2.45
2721 4475 0.725117 GGCGGTATGACCTTTTCGTG 59.275 55.000 0.00 0.00 35.66 4.35
2789 4543 2.571757 CACATGCAAGGCAGCCAG 59.428 61.111 15.80 6.90 43.65 4.85
2798 4552 0.537143 GAGGACACCACCACATGCAA 60.537 55.000 0.00 0.00 0.00 4.08
2799 4553 1.073025 GAGGACACCACCACATGCA 59.927 57.895 0.00 0.00 0.00 3.96
2983 4778 2.251371 GCGTCAACGACTTTGGGC 59.749 61.111 6.75 0.00 43.02 5.36
3115 4923 2.138320 CACAACTACTGTCTGCTGGTG 58.862 52.381 0.00 0.00 35.47 4.17
3118 4926 1.797046 CTGCACAACTACTGTCTGCTG 59.203 52.381 0.00 0.00 35.47 4.41
3120 4928 0.514691 GCTGCACAACTACTGTCTGC 59.485 55.000 0.00 0.00 35.47 4.26
3122 4930 0.946221 GCGCTGCACAACTACTGTCT 60.946 55.000 0.00 0.00 35.47 3.41
3178 5090 2.684843 GCAGAAACAGCCAGCTCCG 61.685 63.158 0.00 0.00 0.00 4.63
3242 5164 7.281100 CAGAAAGTGAAAAACTGAAGGTACTCT 59.719 37.037 0.00 0.00 36.97 3.24
3320 5249 0.721718 CGACAAAAGCAGGATCGACC 59.278 55.000 0.00 0.00 34.77 4.79
3428 5357 1.005512 AAATTTGAAACGGGCGGCC 60.006 52.632 20.04 20.04 0.00 6.13
3430 5359 0.315568 TGGAAATTTGAAACGGGCGG 59.684 50.000 0.00 0.00 0.00 6.13
3469 5398 9.719355 TGAGTGCTCATACAGTAATTTTCTTTA 57.281 29.630 0.00 0.00 34.14 1.85
3470 5399 8.621532 TGAGTGCTCATACAGTAATTTTCTTT 57.378 30.769 0.00 0.00 34.14 2.52
3473 5402 6.092670 TGCTGAGTGCTCATACAGTAATTTTC 59.907 38.462 2.06 0.00 43.37 2.29
3475 5404 5.491070 TGCTGAGTGCTCATACAGTAATTT 58.509 37.500 2.06 0.00 43.37 1.82
3476 5405 5.089970 TGCTGAGTGCTCATACAGTAATT 57.910 39.130 2.06 0.00 43.37 1.40
3477 5406 4.743057 TGCTGAGTGCTCATACAGTAAT 57.257 40.909 2.06 0.00 43.37 1.89
3478 5407 4.220602 TCTTGCTGAGTGCTCATACAGTAA 59.779 41.667 2.06 0.00 43.37 2.24
3496 5425 4.670621 CCGCGTTAAACAATGATATCTTGC 59.329 41.667 4.92 0.00 0.00 4.01
3505 5434 0.802494 AGCTCCCGCGTTAAACAATG 59.198 50.000 4.92 0.00 42.32 2.82
3722 5665 5.107453 CGTTCCTCTGTTGTGTGTTCTTATC 60.107 44.000 0.00 0.00 0.00 1.75
3861 5806 4.514577 CAGCTACAGTCCCGGCGG 62.515 72.222 21.46 21.46 0.00 6.13
4169 6126 8.868635 TTACGAAAAATGTTCCCGTTTAAAAT 57.131 26.923 0.00 0.00 35.05 1.82
4244 6221 7.741198 TCAAAAATTGTGCAGAAGTTTGAAAG 58.259 30.769 24.28 15.32 0.00 2.62
4574 6681 3.892588 AGCCGGTTTTTATCAGTTTTGGA 59.107 39.130 1.90 0.00 0.00 3.53
4725 6842 1.083273 GCACAAAAGCGTCGCGTTA 60.083 52.632 18.52 0.00 29.08 3.18
4726 6843 2.351888 GCACAAAAGCGTCGCGTT 60.352 55.556 12.75 12.75 0.00 4.84
4727 6844 3.506312 CTGCACAAAAGCGTCGCGT 62.506 57.895 12.30 5.52 37.31 6.01
4728 6845 2.792543 CTGCACAAAAGCGTCGCG 60.793 61.111 12.30 0.00 37.31 5.87
4729 6846 2.427410 CCTGCACAAAAGCGTCGC 60.427 61.111 9.80 9.80 37.31 5.19
4730 6847 1.369209 CACCTGCACAAAAGCGTCG 60.369 57.895 0.00 0.00 37.31 5.12
4731 6848 1.008538 CCACCTGCACAAAAGCGTC 60.009 57.895 0.00 0.00 37.31 5.19
4732 6849 1.453015 TCCACCTGCACAAAAGCGT 60.453 52.632 0.00 0.00 37.31 5.07
4733 6850 1.008538 GTCCACCTGCACAAAAGCG 60.009 57.895 0.00 0.00 37.31 4.68
4734 6851 0.675633 ATGTCCACCTGCACAAAAGC 59.324 50.000 0.00 0.00 0.00 3.51
4735 6852 1.270550 GGATGTCCACCTGCACAAAAG 59.729 52.381 0.00 0.00 35.64 2.27
4736 6853 1.327303 GGATGTCCACCTGCACAAAA 58.673 50.000 0.00 0.00 35.64 2.44
4737 6854 0.888736 CGGATGTCCACCTGCACAAA 60.889 55.000 0.00 0.00 35.14 2.83
4738 6855 1.302431 CGGATGTCCACCTGCACAA 60.302 57.895 0.00 0.00 35.14 3.33
4739 6856 2.347114 CGGATGTCCACCTGCACA 59.653 61.111 0.00 0.00 35.14 4.57
4740 6857 2.436646 CCGGATGTCCACCTGCAC 60.437 66.667 0.00 0.00 35.14 4.57
5036 7153 0.951040 GCCAGGTCTTGAACGTCTGG 60.951 60.000 11.74 11.74 45.59 3.86
5201 7318 0.832135 ACTCCTTCTCCGACTTGGCA 60.832 55.000 0.00 0.00 37.80 4.92
5290 7407 1.039068 TACCCGTTTCCACTCGTTGA 58.961 50.000 0.00 0.00 0.00 3.18
5291 7408 1.528161 GTTACCCGTTTCCACTCGTTG 59.472 52.381 0.00 0.00 0.00 4.10
5311 7428 7.550551 TGAAAACAATGAGCTAGATAGGAGTTG 59.449 37.037 0.00 0.00 0.00 3.16
5346 7464 2.279741 GAGATGCGCATGTACCTGAAA 58.720 47.619 30.76 0.00 0.00 2.69
5347 7465 1.473257 GGAGATGCGCATGTACCTGAA 60.473 52.381 30.76 0.00 0.00 3.02
5349 7467 1.217585 CGGAGATGCGCATGTACCTG 61.218 60.000 30.76 14.11 0.00 4.00
5358 7476 0.447801 AAATCAACACGGAGATGCGC 59.552 50.000 0.00 0.00 0.00 6.09
5374 7492 6.807789 ACACATTACAAAACAACCCGTAAAT 58.192 32.000 0.00 0.00 0.00 1.40
5380 7498 5.522097 CCTGAAACACATTACAAAACAACCC 59.478 40.000 0.00 0.00 0.00 4.11
5384 7502 4.355437 CGCCTGAAACACATTACAAAACA 58.645 39.130 0.00 0.00 0.00 2.83
5502 7620 5.182190 TGGCGAGAAGAATACATAGAGCTAG 59.818 44.000 0.00 0.00 0.00 3.42
5577 7698 4.020218 TGCCATCCCCTTATTATCTCTTCG 60.020 45.833 0.00 0.00 0.00 3.79
5579 7700 5.930209 TTGCCATCCCCTTATTATCTCTT 57.070 39.130 0.00 0.00 0.00 2.85
5620 7741 3.461773 CCGTGTCCCTCCGAGCAT 61.462 66.667 0.00 0.00 0.00 3.79
5669 7790 6.183360 GCAGGGAAGTATAGTCTACGTGTTAA 60.183 42.308 0.00 0.00 0.00 2.01
5683 7804 0.254178 CAGCACCAGCAGGGAAGTAT 59.746 55.000 0.00 0.00 45.49 2.12
5715 7836 0.612229 AGCCATCTGGACACACTGAG 59.388 55.000 0.00 0.00 37.39 3.35
5741 7862 2.917971 GTCTGTCTGTCTGTCGCATAAC 59.082 50.000 0.00 0.00 0.00 1.89
5748 7869 1.600663 CCGTGTGTCTGTCTGTCTGTC 60.601 57.143 0.00 0.00 0.00 3.51
5749 7870 0.385751 CCGTGTGTCTGTCTGTCTGT 59.614 55.000 0.00 0.00 0.00 3.41
5750 7871 0.668535 TCCGTGTGTCTGTCTGTCTG 59.331 55.000 0.00 0.00 0.00 3.51
5751 7872 0.669077 GTCCGTGTGTCTGTCTGTCT 59.331 55.000 0.00 0.00 0.00 3.41
5752 7873 0.384309 TGTCCGTGTGTCTGTCTGTC 59.616 55.000 0.00 0.00 0.00 3.51
5753 7874 0.102481 GTGTCCGTGTGTCTGTCTGT 59.898 55.000 0.00 0.00 0.00 3.41
5754 7875 0.934901 CGTGTCCGTGTGTCTGTCTG 60.935 60.000 0.00 0.00 0.00 3.51
5755 7876 1.359117 CGTGTCCGTGTGTCTGTCT 59.641 57.895 0.00 0.00 0.00 3.41
5863 7985 1.407618 TCCCACGGTAGAATCACATCG 59.592 52.381 0.00 0.00 0.00 3.84
5880 8002 1.253100 TCCGAAACAGCCATTTTCCC 58.747 50.000 0.00 0.00 30.44 3.97
5885 8007 1.600023 TCGTTTCCGAAACAGCCATT 58.400 45.000 21.07 0.00 40.86 3.16
5896 8018 6.259167 TCAACCTATATTCCATTTCGTTTCCG 59.741 38.462 0.00 0.00 0.00 4.30
5957 8079 1.066257 CAAGCACCAAAACGCTGCT 59.934 52.632 0.00 0.00 43.21 4.24
5989 8111 0.463654 GTGGGCATTATCAGCGTCCA 60.464 55.000 0.00 0.00 0.00 4.02
5993 8115 1.002142 CATGTGTGGGCATTATCAGCG 60.002 52.381 0.00 0.00 0.00 5.18
6021 8151 0.976073 TCATTCGGTCTCAGGGTCCC 60.976 60.000 0.00 0.00 0.00 4.46
6040 8170 4.090066 CGAAAATGTTCAGTTCGATCGACT 59.910 41.667 19.26 15.14 45.32 4.18
6063 8193 2.789715 GGTGGGGATCGTACCGGAC 61.790 68.421 9.46 0.32 0.00 4.79
6064 8194 2.442643 GGTGGGGATCGTACCGGA 60.443 66.667 9.46 0.00 0.00 5.14
6065 8195 3.543641 GGGTGGGGATCGTACCGG 61.544 72.222 0.00 0.00 35.31 5.28
6066 8196 3.543641 GGGGTGGGGATCGTACCG 61.544 72.222 5.81 0.00 35.31 4.02
6067 8197 3.166394 GGGGGTGGGGATCGTACC 61.166 72.222 3.73 3.73 0.00 3.34
6068 8198 3.543641 CGGGGGTGGGGATCGTAC 61.544 72.222 0.00 0.00 0.00 3.67
6083 8213 4.394712 AAGGGTTCAGGAGCGCGG 62.395 66.667 8.83 0.00 0.00 6.46
6084 8214 3.121030 CAAGGGTTCAGGAGCGCG 61.121 66.667 0.00 0.00 0.00 6.86
6085 8215 2.521958 TAGCAAGGGTTCAGGAGCGC 62.522 60.000 0.00 0.00 0.00 5.92
6086 8216 0.036388 TTAGCAAGGGTTCAGGAGCG 60.036 55.000 0.00 0.00 0.00 5.03
6087 8217 1.454201 GTTAGCAAGGGTTCAGGAGC 58.546 55.000 0.00 0.00 0.00 4.70
6088 8218 1.275291 TCGTTAGCAAGGGTTCAGGAG 59.725 52.381 0.00 0.00 0.00 3.69
6089 8219 1.344065 TCGTTAGCAAGGGTTCAGGA 58.656 50.000 0.00 0.00 0.00 3.86
6090 8220 2.178912 TTCGTTAGCAAGGGTTCAGG 57.821 50.000 0.00 0.00 0.00 3.86
6091 8221 2.096417 CGTTTCGTTAGCAAGGGTTCAG 60.096 50.000 0.00 0.00 0.00 3.02
6092 8222 1.868498 CGTTTCGTTAGCAAGGGTTCA 59.132 47.619 0.00 0.00 0.00 3.18
6093 8223 1.869132 ACGTTTCGTTAGCAAGGGTTC 59.131 47.619 0.00 0.00 36.35 3.62
6094 8224 1.869132 GACGTTTCGTTAGCAAGGGTT 59.131 47.619 0.00 0.00 41.37 4.11
6095 8225 1.069668 AGACGTTTCGTTAGCAAGGGT 59.930 47.619 0.00 0.00 41.37 4.34
6096 8226 1.725164 GAGACGTTTCGTTAGCAAGGG 59.275 52.381 0.00 0.00 41.37 3.95
6097 8227 2.673833 AGAGACGTTTCGTTAGCAAGG 58.326 47.619 0.00 0.00 41.37 3.61
6098 8228 3.661936 GCAAGAGACGTTTCGTTAGCAAG 60.662 47.826 0.00 0.00 41.37 4.01
6099 8229 2.220133 GCAAGAGACGTTTCGTTAGCAA 59.780 45.455 0.00 0.00 41.37 3.91
6100 8230 1.790623 GCAAGAGACGTTTCGTTAGCA 59.209 47.619 0.00 0.00 41.37 3.49
6101 8231 1.790623 TGCAAGAGACGTTTCGTTAGC 59.209 47.619 0.00 4.62 41.37 3.09
6102 8232 2.160143 CGTGCAAGAGACGTTTCGTTAG 60.160 50.000 0.00 0.00 41.37 2.34
6103 8233 1.782569 CGTGCAAGAGACGTTTCGTTA 59.217 47.619 0.00 0.00 41.37 3.18
6104 8234 0.575390 CGTGCAAGAGACGTTTCGTT 59.425 50.000 0.00 0.00 41.37 3.85
6121 8626 3.920446 GGCACCCATTTATTTTGTTCGT 58.080 40.909 0.00 0.00 0.00 3.85
6139 8644 5.860941 TTTGTTTGTTCAAATCTAGGGCA 57.139 34.783 1.33 0.00 33.23 5.36
6165 8670 1.589414 AGGGCTGGCTATCTTGTTCT 58.411 50.000 0.00 0.00 0.00 3.01
6199 8705 3.187637 TCTGTTTTGTACGCAATGGCTAC 59.812 43.478 0.00 0.00 38.10 3.58
6220 8726 0.826062 CACATGGCAAATCCCCCTTC 59.174 55.000 0.00 0.00 0.00 3.46
6227 8733 7.887996 TTTTTATCTCAACACATGGCAAATC 57.112 32.000 0.00 0.00 0.00 2.17
6273 8780 8.923270 TCATTTTTGGTATTCTTTTCACCTTCT 58.077 29.630 0.00 0.00 33.28 2.85
6367 8874 8.707839 GTCGATTGGCAATATTTTTGAGAAAAA 58.292 29.630 13.65 0.00 43.76 1.94
6373 8880 7.857734 TCTAGTCGATTGGCAATATTTTTGA 57.142 32.000 13.65 5.61 0.00 2.69
6375 8882 8.050778 TGTTCTAGTCGATTGGCAATATTTTT 57.949 30.769 13.65 1.16 0.00 1.94
6380 8887 8.902540 ATAATTGTTCTAGTCGATTGGCAATA 57.097 30.769 13.65 0.00 0.00 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.