Multiple sequence alignment - TraesCS4A01G093800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G093800 chr4A 100.000 7338 0 0 1 7338 101747678 101740341 0.000000e+00 13551.0
1 TraesCS4A01G093800 chr4A 100.000 39 0 0 5326 5364 6936855 6936817 1.020000e-08 73.1
2 TraesCS4A01G093800 chr4A 93.617 47 1 2 5326 5372 546624884 546624840 1.320000e-07 69.4
3 TraesCS4A01G093800 chr4B 93.323 3325 168 36 716 4025 449128683 449131968 0.000000e+00 4861.0
4 TraesCS4A01G093800 chr4B 94.610 1206 40 11 5411 6603 449133153 449134346 0.000000e+00 1844.0
5 TraesCS4A01G093800 chr4B 97.140 1049 25 1 4281 5329 449131966 449133009 0.000000e+00 1766.0
6 TraesCS4A01G093800 chr4B 92.416 356 22 4 188 538 449127401 449127756 3.060000e-138 503.0
7 TraesCS4A01G093800 chr4B 96.335 191 6 1 3 193 449125766 449125955 5.530000e-81 313.0
8 TraesCS4A01G093800 chr4B 100.000 52 0 0 5361 5412 449132988 449133039 6.060000e-16 97.1
9 TraesCS4A01G093800 chr4B 95.455 44 2 0 5326 5369 598406439 598406482 3.670000e-08 71.3
10 TraesCS4A01G093800 chr4D 98.479 2695 33 5 2635 5329 363682329 363685015 0.000000e+00 4743.0
11 TraesCS4A01G093800 chr4D 94.226 2113 69 30 599 2673 363680229 363682326 0.000000e+00 3177.0
12 TraesCS4A01G093800 chr4D 95.269 1247 34 5 5361 6603 363684994 363686219 0.000000e+00 1953.0
13 TraesCS4A01G093800 chr4D 93.199 544 22 4 3 538 363679677 363680213 0.000000e+00 785.0
14 TraesCS4A01G093800 chr4D 93.822 259 15 1 4023 4280 301303370 301303628 8.930000e-104 388.0
15 TraesCS4A01G093800 chr4D 93.103 261 17 1 4024 4283 336538920 336538660 1.490000e-101 381.0
16 TraesCS4A01G093800 chr4D 91.667 156 13 0 7183 7338 11599477 11599632 4.460000e-52 217.0
17 TraesCS4A01G093800 chr4D 97.561 41 1 0 5326 5366 355283692 355283732 3.670000e-08 71.3
18 TraesCS4A01G093800 chr1D 91.282 585 46 4 6755 7338 470865811 470866391 0.000000e+00 793.0
19 TraesCS4A01G093800 chr1D 87.980 599 58 8 6750 7338 473733211 473733805 0.000000e+00 695.0
20 TraesCS4A01G093800 chr5D 96.198 263 9 1 4022 4284 269336242 269336503 5.260000e-116 429.0
21 TraesCS4A01G093800 chr5D 93.870 261 15 1 4024 4283 517455439 517455179 6.900000e-105 392.0
22 TraesCS4A01G093800 chr5D 96.875 32 1 0 504 535 338246787 338246818 4.000000e-03 54.7
23 TraesCS4A01G093800 chr6D 94.208 259 13 2 4021 4278 68074965 68075222 1.920000e-105 394.0
24 TraesCS4A01G093800 chr6D 92.537 268 17 3 4020 4286 25991441 25991706 1.490000e-101 381.0
25 TraesCS4A01G093800 chr2D 93.156 263 17 1 4024 4285 645733179 645733441 1.150000e-102 385.0
26 TraesCS4A01G093800 chr2D 100.000 40 0 0 5326 5365 416933297 416933336 2.840000e-09 75.0
27 TraesCS4A01G093800 chr5A 91.513 271 21 2 4019 4287 377937088 377937358 8.990000e-99 372.0
28 TraesCS4A01G093800 chr7B 94.000 50 1 2 5326 5374 156951013 156951061 2.840000e-09 75.0
29 TraesCS4A01G093800 chr7B 97.619 42 0 1 5326 5367 472508761 472508721 3.670000e-08 71.3
30 TraesCS4A01G093800 chr7D 97.619 42 0 1 5326 5367 426750236 426750276 3.670000e-08 71.3
31 TraesCS4A01G093800 chr6A 97.619 42 0 1 5326 5367 64065252 64065212 3.670000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G093800 chr4A 101740341 101747678 7337 True 13551.000000 13551 100.000000 1 7338 1 chr4A.!!$R2 7337
1 TraesCS4A01G093800 chr4B 449125766 449134346 8580 False 1564.016667 4861 95.637333 3 6603 6 chr4B.!!$F2 6600
2 TraesCS4A01G093800 chr4D 363679677 363686219 6542 False 2664.500000 4743 95.293250 3 6603 4 chr4D.!!$F4 6600
3 TraesCS4A01G093800 chr1D 470865811 470866391 580 False 793.000000 793 91.282000 6755 7338 1 chr1D.!!$F1 583
4 TraesCS4A01G093800 chr1D 473733211 473733805 594 False 695.000000 695 87.980000 6750 7338 1 chr1D.!!$F2 588

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
812 3079 0.868406 GCCGAGTGAACAAGTCCTTG 59.132 55.0 5.51 5.51 45.58 3.61 F
1776 4067 0.328258 CCCGTCTCTTCCCATGGTTT 59.672 55.0 11.73 0.00 0.00 3.27 F
1919 4210 1.317613 TGGTTTGCATTTCTCTGCGT 58.682 45.0 0.00 0.00 45.30 5.24 F
3507 5849 1.577736 AGCAGTAGGCAGTTCCTCAT 58.422 50.0 0.00 0.00 43.20 2.90 F
5163 7508 2.455674 TGGACAGTCATTGTTCTCCG 57.544 50.0 2.17 0.00 41.05 4.63 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1923 4214 0.247460 TGCCAGACTCTTGATCACGG 59.753 55.000 0.00 0.00 0.00 4.94 R
3884 6229 7.878477 AAACATGCAATTGTGATGACTTTAG 57.122 32.000 20.17 0.34 0.00 1.85 R
4022 6367 7.985752 CAGAGTAAATAAAAACGGAGGGAGTAT 59.014 37.037 0.00 0.00 0.00 2.12 R
5331 7676 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30 R
6665 9136 0.107831 AAGAACTGGCGGCACAAGTA 59.892 50.000 7.97 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
177 178 9.368921 CATGTATGTATGCTTTGTAACATAACG 57.631 33.333 0.00 0.00 36.77 3.18
241 1693 4.340894 TTCGCAACAATTCTATGTGCTC 57.659 40.909 0.00 0.00 32.81 4.26
312 1767 2.685897 GTTCCTGTGTGCCACTTGTTAA 59.314 45.455 0.00 0.00 35.11 2.01
407 1870 1.282875 GTCGTGTTTGCTTCCTGGC 59.717 57.895 0.00 0.00 0.00 4.85
450 1913 2.925306 GCATCATCCGTCCGGTATACAC 60.925 54.545 0.00 0.00 36.47 2.90
490 1953 3.560068 ACGATTCCGACCAAATTCATAGC 59.440 43.478 0.00 0.00 39.50 2.97
516 1979 5.404946 AGACATATACACGCACTAAAACGT 58.595 37.500 0.00 0.00 44.75 3.99
531 1994 8.903723 GCACTAAAACGTGTCTATATACATCTC 58.096 37.037 0.00 0.00 37.24 2.75
575 2038 7.849322 ATAAAACATCTTTTGGGGTTACAGT 57.151 32.000 0.00 0.00 31.74 3.55
576 2039 8.943594 ATAAAACATCTTTTGGGGTTACAGTA 57.056 30.769 0.00 0.00 31.74 2.74
577 2040 6.644248 AAACATCTTTTGGGGTTACAGTAC 57.356 37.500 0.00 0.00 0.00 2.73
578 2041 5.313280 ACATCTTTTGGGGTTACAGTACA 57.687 39.130 0.00 0.00 0.00 2.90
579 2042 5.697067 ACATCTTTTGGGGTTACAGTACAA 58.303 37.500 0.00 0.00 0.00 2.41
580 2043 5.533528 ACATCTTTTGGGGTTACAGTACAAC 59.466 40.000 0.00 0.00 0.00 3.32
581 2044 5.113446 TCTTTTGGGGTTACAGTACAACA 57.887 39.130 0.00 0.00 0.00 3.33
582 2045 5.697067 TCTTTTGGGGTTACAGTACAACAT 58.303 37.500 0.00 0.00 0.00 2.71
583 2046 6.130569 TCTTTTGGGGTTACAGTACAACATT 58.869 36.000 0.00 0.00 0.00 2.71
584 2047 6.608002 TCTTTTGGGGTTACAGTACAACATTT 59.392 34.615 0.00 0.00 0.00 2.32
585 2048 6.793505 TTTGGGGTTACAGTACAACATTTT 57.206 33.333 0.00 0.00 0.00 1.82
586 2049 6.793505 TTGGGGTTACAGTACAACATTTTT 57.206 33.333 0.00 0.00 0.00 1.94
645 2114 7.921745 CGAAATAGAGGGAGTACTTTTTAGAGG 59.078 40.741 0.00 0.00 0.00 3.69
713 2183 5.964887 GCAGAAGCGGAGATATGATATTC 57.035 43.478 0.00 0.00 0.00 1.75
714 2184 4.808364 GCAGAAGCGGAGATATGATATTCC 59.192 45.833 0.00 0.00 0.00 3.01
812 3079 0.868406 GCCGAGTGAACAAGTCCTTG 59.132 55.000 5.51 5.51 45.58 3.61
921 3197 1.592939 GGCGGAAGGAATCTCGAGC 60.593 63.158 7.81 0.00 0.00 5.03
922 3198 1.592939 GCGGAAGGAATCTCGAGCC 60.593 63.158 7.81 3.18 0.00 4.70
1321 3597 4.024438 CGCAATTGCTTTCGATCTGTTAG 58.976 43.478 26.86 3.49 39.32 2.34
1324 3611 5.858581 GCAATTGCTTTCGATCTGTTAGTTT 59.141 36.000 23.21 0.00 38.21 2.66
1325 3612 6.363357 GCAATTGCTTTCGATCTGTTAGTTTT 59.637 34.615 23.21 0.00 38.21 2.43
1326 3613 7.537306 GCAATTGCTTTCGATCTGTTAGTTTTA 59.463 33.333 23.21 0.00 38.21 1.52
1327 3614 9.559958 CAATTGCTTTCGATCTGTTAGTTTTAT 57.440 29.630 0.00 0.00 0.00 1.40
1375 3662 7.004691 TCTGCTGTCTATTAGTATTAGCCTGA 58.995 38.462 0.00 0.00 0.00 3.86
1376 3663 7.671819 TCTGCTGTCTATTAGTATTAGCCTGAT 59.328 37.037 0.00 0.00 0.00 2.90
1466 3754 6.743575 GTAGACAACCAAGCAAATGATAGT 57.256 37.500 0.00 0.00 0.00 2.12
1469 3757 7.054491 AGACAACCAAGCAAATGATAGTTTT 57.946 32.000 0.00 0.00 0.00 2.43
1576 3866 7.780271 AGGTTCCAGAAGAATAACTGTTTTTCT 59.220 33.333 17.02 17.02 36.69 2.52
1670 3960 4.084287 AGTATTGTCGAGGTGGTGACTTA 58.916 43.478 0.00 0.00 36.10 2.24
1676 3966 1.535437 CGAGGTGGTGACTTATACGCC 60.535 57.143 0.00 0.00 38.27 5.68
1708 3998 3.119495 CGGCATAAAAGGGTTCCTGAAAG 60.119 47.826 0.00 0.00 32.13 2.62
1724 4014 5.068987 TCCTGAAAGTGTTGCTAAGCATTTT 59.931 36.000 0.00 0.00 38.76 1.82
1776 4067 0.328258 CCCGTCTCTTCCCATGGTTT 59.672 55.000 11.73 0.00 0.00 3.27
1792 4083 5.105635 CCATGGTTTATTCATGTTCTGTGCT 60.106 40.000 2.57 0.00 40.07 4.40
1829 4120 1.610522 GTTTCTGCAGCATGTGGTCTT 59.389 47.619 9.47 0.00 39.31 3.01
1918 4209 2.420628 TTGGTTTGCATTTCTCTGCG 57.579 45.000 0.00 0.00 45.30 5.18
1919 4210 1.317613 TGGTTTGCATTTCTCTGCGT 58.682 45.000 0.00 0.00 45.30 5.24
1923 4214 4.098416 GGTTTGCATTTCTCTGCGTATTC 58.902 43.478 0.00 0.00 45.30 1.75
1940 4231 3.533606 ATTCCGTGATCAAGAGTCTGG 57.466 47.619 10.47 0.00 0.00 3.86
1953 4244 6.061441 TCAAGAGTCTGGCAAAAGAAATACA 58.939 36.000 0.00 0.00 0.00 2.29
1955 4246 7.231317 TCAAGAGTCTGGCAAAAGAAATACAAT 59.769 33.333 0.00 0.00 0.00 2.71
2127 4419 8.040727 TGTTCTATTTCATTCATTCTCGGAGAA 58.959 33.333 21.69 21.69 38.78 2.87
2128 4420 8.883731 GTTCTATTTCATTCATTCTCGGAGAAA 58.116 33.333 23.06 8.66 37.82 2.52
2154 4446 5.148651 ACATTAGTTGCTACTTTCCTCGT 57.851 39.130 6.03 0.00 35.78 4.18
2421 4715 2.037049 ATGCCATGGCCAAACGGA 59.963 55.556 33.44 13.93 41.09 4.69
2471 4765 4.286032 TCCTGCACTAATAGGTCAGTGTTT 59.714 41.667 3.90 0.00 43.33 2.83
2472 4766 5.003804 CCTGCACTAATAGGTCAGTGTTTT 58.996 41.667 3.90 0.00 43.33 2.43
2520 4814 4.495565 TCTAACCCACTCCTTTCCTAACA 58.504 43.478 0.00 0.00 0.00 2.41
2731 5070 8.140677 TGTCTGCAATAATTTTGACAAAAAGG 57.859 30.769 16.85 6.71 38.62 3.11
2732 5071 7.984050 TGTCTGCAATAATTTTGACAAAAAGGA 59.016 29.630 16.85 6.26 38.62 3.36
2789 5128 6.872920 TGCTTCATTTTGAGGTAGTTTTTGT 58.127 32.000 0.00 0.00 0.00 2.83
2916 5257 2.656560 ACTTCAGTATGTCAGGCGTC 57.343 50.000 0.00 0.00 37.40 5.19
3507 5849 1.577736 AGCAGTAGGCAGTTCCTCAT 58.422 50.000 0.00 0.00 43.20 2.90
3967 6312 7.280876 ACCATGTACAGTGTATCATTGAACATC 59.719 37.037 6.21 0.00 0.00 3.06
5058 7403 9.113838 GCTAAATATGAGAATCCTTCTGTTTCA 57.886 33.333 0.00 0.00 40.87 2.69
5109 7454 4.707988 CCAATAAATGGCACCGCG 57.292 55.556 0.00 0.00 43.80 6.46
5163 7508 2.455674 TGGACAGTCATTGTTCTCCG 57.544 50.000 2.17 0.00 41.05 4.63
5334 7679 3.845860 ACTCTCTAGTCTTTGTGTGGGA 58.154 45.455 0.00 0.00 0.00 4.37
5335 7680 3.829601 ACTCTCTAGTCTTTGTGTGGGAG 59.170 47.826 0.00 0.00 0.00 4.30
5336 7681 2.563179 TCTCTAGTCTTTGTGTGGGAGC 59.437 50.000 0.00 0.00 0.00 4.70
5337 7682 2.564947 CTCTAGTCTTTGTGTGGGAGCT 59.435 50.000 0.00 0.00 0.00 4.09
5338 7683 2.972713 TCTAGTCTTTGTGTGGGAGCTT 59.027 45.455 0.00 0.00 0.00 3.74
5339 7684 2.262423 AGTCTTTGTGTGGGAGCTTC 57.738 50.000 0.00 0.00 0.00 3.86
5340 7685 1.771255 AGTCTTTGTGTGGGAGCTTCT 59.229 47.619 0.00 0.00 0.00 2.85
5341 7686 2.972713 AGTCTTTGTGTGGGAGCTTCTA 59.027 45.455 0.00 0.00 0.00 2.10
5342 7687 3.584848 AGTCTTTGTGTGGGAGCTTCTAT 59.415 43.478 0.00 0.00 0.00 1.98
5343 7688 3.686726 GTCTTTGTGTGGGAGCTTCTATG 59.313 47.826 0.00 0.00 0.00 2.23
5344 7689 2.113860 TTGTGTGGGAGCTTCTATGC 57.886 50.000 0.00 0.00 0.00 3.14
5345 7690 0.983467 TGTGTGGGAGCTTCTATGCA 59.017 50.000 0.00 0.00 34.99 3.96
5346 7691 1.339055 TGTGTGGGAGCTTCTATGCAC 60.339 52.381 0.00 0.00 34.99 4.57
5347 7692 1.065854 GTGTGGGAGCTTCTATGCACT 60.066 52.381 0.00 0.00 34.99 4.40
5348 7693 1.065926 TGTGGGAGCTTCTATGCACTG 60.066 52.381 0.00 0.00 34.99 3.66
5349 7694 0.543277 TGGGAGCTTCTATGCACTGG 59.457 55.000 0.00 0.00 34.99 4.00
5350 7695 0.179034 GGGAGCTTCTATGCACTGGG 60.179 60.000 0.00 0.00 34.99 4.45
5351 7696 0.543749 GGAGCTTCTATGCACTGGGT 59.456 55.000 0.00 0.00 34.99 4.51
5352 7697 1.474143 GGAGCTTCTATGCACTGGGTC 60.474 57.143 0.00 0.00 34.99 4.46
5353 7698 1.484240 GAGCTTCTATGCACTGGGTCT 59.516 52.381 0.00 0.00 34.99 3.85
5354 7699 1.209019 AGCTTCTATGCACTGGGTCTG 59.791 52.381 0.00 0.00 34.99 3.51
5355 7700 1.065854 GCTTCTATGCACTGGGTCTGT 60.066 52.381 0.00 0.00 0.00 3.41
5356 7701 2.898705 CTTCTATGCACTGGGTCTGTC 58.101 52.381 0.00 0.00 0.00 3.51
5357 7702 1.195115 TCTATGCACTGGGTCTGTCC 58.805 55.000 0.00 0.00 0.00 4.02
5358 7703 1.198713 CTATGCACTGGGTCTGTCCT 58.801 55.000 0.00 0.00 36.25 3.85
5359 7704 1.556911 CTATGCACTGGGTCTGTCCTT 59.443 52.381 0.00 0.00 36.25 3.36
5360 7705 0.773644 ATGCACTGGGTCTGTCCTTT 59.226 50.000 0.00 0.00 36.25 3.11
5361 7706 0.550914 TGCACTGGGTCTGTCCTTTT 59.449 50.000 0.00 0.00 36.25 2.27
5362 7707 0.954452 GCACTGGGTCTGTCCTTTTG 59.046 55.000 0.00 0.00 36.25 2.44
5363 7708 1.476833 GCACTGGGTCTGTCCTTTTGA 60.477 52.381 0.00 0.00 36.25 2.69
5364 7709 2.815589 GCACTGGGTCTGTCCTTTTGAT 60.816 50.000 0.00 0.00 36.25 2.57
5365 7710 2.816087 CACTGGGTCTGTCCTTTTGATG 59.184 50.000 0.00 0.00 36.25 3.07
5366 7711 2.711009 ACTGGGTCTGTCCTTTTGATGA 59.289 45.455 0.00 0.00 36.25 2.92
5367 7712 3.077359 CTGGGTCTGTCCTTTTGATGAC 58.923 50.000 0.00 0.00 36.25 3.06
5368 7713 2.711009 TGGGTCTGTCCTTTTGATGACT 59.289 45.455 0.00 0.00 36.25 3.41
5369 7714 3.244561 TGGGTCTGTCCTTTTGATGACTC 60.245 47.826 0.00 0.00 33.24 3.36
5370 7715 3.008485 GGGTCTGTCCTTTTGATGACTCT 59.992 47.826 0.00 0.00 36.25 3.24
5371 7716 4.249661 GGTCTGTCCTTTTGATGACTCTC 58.750 47.826 0.00 0.00 32.99 3.20
5717 8184 1.264045 GCTGCCAGAGAGAGTCCCTT 61.264 60.000 0.00 0.00 0.00 3.95
5718 8185 0.536260 CTGCCAGAGAGAGTCCCTTG 59.464 60.000 0.00 0.00 0.00 3.61
5808 8275 5.474189 TGATGAAGAATGCACACAGATTGAA 59.526 36.000 0.00 0.00 0.00 2.69
5862 8329 2.104792 AGAACTTGCAAGCACTGTAGGA 59.895 45.455 26.27 0.00 0.00 2.94
5879 8346 3.759815 AGGACAGATACCTGGTACTGT 57.240 47.619 27.23 27.23 44.60 3.55
5913 8380 2.808202 GCCGTGAGCCATTATCATCTGT 60.808 50.000 0.00 0.00 34.35 3.41
5920 8387 7.412853 GTGAGCCATTATCATCTGTTTTGTAG 58.587 38.462 0.00 0.00 0.00 2.74
6052 8519 6.080406 GTGTAAGTACAAGCATGCTTTCTTC 58.920 40.000 30.07 22.16 38.04 2.87
6100 8567 1.868469 TTACGACTTTTGTCCACCCG 58.132 50.000 0.00 0.00 46.25 5.28
6223 8690 1.667154 TTCTCCTGATCGAGGCACCG 61.667 60.000 6.38 0.00 42.47 4.94
6229 8696 3.701604 GATCGAGGCACCGTCGCTT 62.702 63.158 0.00 0.00 37.35 4.68
6295 8762 1.938577 CTGCGCTCATACATTGAAGCT 59.061 47.619 9.73 0.00 38.30 3.74
6340 8807 1.480212 AATGCCCGAGTCACTGACCA 61.480 55.000 5.51 0.00 32.18 4.02
6500 8968 4.813750 ACTGCCCAAACTACTACGTAAT 57.186 40.909 0.00 0.00 0.00 1.89
6507 8975 4.565564 CCAAACTACTACGTAATGTGAGGC 59.434 45.833 0.00 0.00 0.00 4.70
6522 8990 3.871574 GGCGTGTGTGCGTGTGTT 61.872 61.111 0.00 0.00 35.06 3.32
6523 8991 2.647481 GCGTGTGTGCGTGTGTTG 60.647 61.111 0.00 0.00 0.00 3.33
6524 8992 2.781957 CGTGTGTGCGTGTGTTGT 59.218 55.556 0.00 0.00 0.00 3.32
6526 8994 0.370615 CGTGTGTGCGTGTGTTGTTA 59.629 50.000 0.00 0.00 0.00 2.41
6527 8995 1.201932 CGTGTGTGCGTGTGTTGTTAA 60.202 47.619 0.00 0.00 0.00 2.01
6528 8996 2.170770 GTGTGTGCGTGTGTTGTTAAC 58.829 47.619 0.00 0.00 0.00 2.01
6531 8999 3.683340 TGTGTGCGTGTGTTGTTAACTTA 59.317 39.130 7.22 0.00 0.00 2.24
6533 9001 5.163744 TGTGTGCGTGTGTTGTTAACTTATT 60.164 36.000 7.22 0.00 0.00 1.40
6562 9033 8.060931 TGCATGCTTTATTCTGTACCAATTAA 57.939 30.769 20.33 0.00 0.00 1.40
6563 9034 8.190122 TGCATGCTTTATTCTGTACCAATTAAG 58.810 33.333 20.33 8.18 0.00 1.85
6564 9035 7.649306 GCATGCTTTATTCTGTACCAATTAAGG 59.351 37.037 11.37 0.00 0.00 2.69
6565 9036 7.095695 TGCTTTATTCTGTACCAATTAAGGC 57.904 36.000 12.05 9.25 0.00 4.35
6566 9037 6.889722 TGCTTTATTCTGTACCAATTAAGGCT 59.110 34.615 12.05 0.00 0.00 4.58
6567 9038 7.148086 TGCTTTATTCTGTACCAATTAAGGCTG 60.148 37.037 12.05 0.00 0.00 4.85
6568 9039 6.693315 TTATTCTGTACCAATTAAGGCTGC 57.307 37.500 0.00 0.00 0.00 5.25
6593 9064 0.384309 GCAGCCATGGTCATGATGTG 59.616 55.000 14.67 7.42 41.20 3.21
6603 9074 3.930336 GGTCATGATGTGAACAGACTGA 58.070 45.455 10.08 0.00 44.28 3.41
6604 9075 4.318332 GGTCATGATGTGAACAGACTGAA 58.682 43.478 10.08 0.00 44.28 3.02
6605 9076 4.391216 GGTCATGATGTGAACAGACTGAAG 59.609 45.833 10.08 0.00 44.28 3.02
6606 9077 4.391216 GTCATGATGTGAACAGACTGAAGG 59.609 45.833 10.08 0.00 38.90 3.46
6607 9078 4.040829 TCATGATGTGAACAGACTGAAGGT 59.959 41.667 10.08 0.00 32.78 3.50
6608 9079 3.732212 TGATGTGAACAGACTGAAGGTG 58.268 45.455 10.08 0.00 0.00 4.00
6609 9080 3.134623 TGATGTGAACAGACTGAAGGTGT 59.865 43.478 10.08 0.00 0.00 4.16
6610 9081 3.627395 TGTGAACAGACTGAAGGTGTT 57.373 42.857 10.08 0.00 37.12 3.32
6611 9082 3.270027 TGTGAACAGACTGAAGGTGTTG 58.730 45.455 10.08 0.00 34.55 3.33
6612 9083 3.270877 GTGAACAGACTGAAGGTGTTGT 58.729 45.455 10.08 0.00 34.55 3.32
6613 9084 4.081365 TGTGAACAGACTGAAGGTGTTGTA 60.081 41.667 10.08 0.00 34.55 2.41
6614 9085 4.270325 GTGAACAGACTGAAGGTGTTGTAC 59.730 45.833 10.08 0.00 34.55 2.90
6615 9086 4.161565 TGAACAGACTGAAGGTGTTGTACT 59.838 41.667 10.08 0.00 34.55 2.73
6616 9087 4.060038 ACAGACTGAAGGTGTTGTACTG 57.940 45.455 10.08 0.00 0.00 2.74
6617 9088 3.704566 ACAGACTGAAGGTGTTGTACTGA 59.295 43.478 10.08 0.00 0.00 3.41
6618 9089 4.051922 CAGACTGAAGGTGTTGTACTGAC 58.948 47.826 0.00 0.00 0.00 3.51
6619 9090 3.961408 AGACTGAAGGTGTTGTACTGACT 59.039 43.478 0.00 0.00 0.00 3.41
6620 9091 4.051922 GACTGAAGGTGTTGTACTGACTG 58.948 47.826 0.00 0.00 0.00 3.51
6621 9092 3.451178 ACTGAAGGTGTTGTACTGACTGT 59.549 43.478 0.00 0.00 0.00 3.55
6622 9093 4.051922 CTGAAGGTGTTGTACTGACTGTC 58.948 47.826 0.00 0.00 0.00 3.51
6623 9094 3.704566 TGAAGGTGTTGTACTGACTGTCT 59.295 43.478 9.51 0.00 0.00 3.41
6624 9095 4.891168 TGAAGGTGTTGTACTGACTGTCTA 59.109 41.667 9.51 0.00 0.00 2.59
6625 9096 5.538813 TGAAGGTGTTGTACTGACTGTCTAT 59.461 40.000 9.51 0.00 0.00 1.98
6626 9097 5.392767 AGGTGTTGTACTGACTGTCTATG 57.607 43.478 9.51 2.35 0.00 2.23
6627 9098 4.220821 AGGTGTTGTACTGACTGTCTATGG 59.779 45.833 9.51 0.01 0.00 2.74
6628 9099 4.021368 GGTGTTGTACTGACTGTCTATGGT 60.021 45.833 9.51 5.64 0.00 3.55
6629 9100 5.510861 GGTGTTGTACTGACTGTCTATGGTT 60.511 44.000 9.51 0.00 0.00 3.67
6630 9101 5.989777 GTGTTGTACTGACTGTCTATGGTTT 59.010 40.000 9.51 0.00 0.00 3.27
6631 9102 7.149973 GTGTTGTACTGACTGTCTATGGTTTA 58.850 38.462 9.51 0.00 0.00 2.01
6632 9103 7.115947 GTGTTGTACTGACTGTCTATGGTTTAC 59.884 40.741 9.51 1.45 0.00 2.01
6633 9104 7.014905 TGTTGTACTGACTGTCTATGGTTTACT 59.985 37.037 9.51 0.00 0.00 2.24
6634 9105 6.920817 TGTACTGACTGTCTATGGTTTACTG 58.079 40.000 9.51 0.00 0.00 2.74
6635 9106 6.492429 TGTACTGACTGTCTATGGTTTACTGT 59.508 38.462 9.51 0.00 0.00 3.55
6636 9107 6.420913 ACTGACTGTCTATGGTTTACTGTT 57.579 37.500 9.51 0.00 0.00 3.16
6637 9108 6.827727 ACTGACTGTCTATGGTTTACTGTTT 58.172 36.000 9.51 0.00 0.00 2.83
6638 9109 6.706270 ACTGACTGTCTATGGTTTACTGTTTG 59.294 38.462 9.51 0.00 0.00 2.93
6639 9110 6.588204 TGACTGTCTATGGTTTACTGTTTGT 58.412 36.000 9.51 0.00 0.00 2.83
6640 9111 6.704493 TGACTGTCTATGGTTTACTGTTTGTC 59.296 38.462 9.51 0.00 0.00 3.18
6641 9112 6.827727 ACTGTCTATGGTTTACTGTTTGTCT 58.172 36.000 0.00 0.00 0.00 3.41
6642 9113 6.706270 ACTGTCTATGGTTTACTGTTTGTCTG 59.294 38.462 0.00 0.00 0.00 3.51
6643 9114 5.468746 TGTCTATGGTTTACTGTTTGTCTGC 59.531 40.000 0.00 0.00 0.00 4.26
6644 9115 5.701290 GTCTATGGTTTACTGTTTGTCTGCT 59.299 40.000 0.00 0.00 0.00 4.24
6645 9116 6.204882 GTCTATGGTTTACTGTTTGTCTGCTT 59.795 38.462 0.00 0.00 0.00 3.91
6646 9117 4.893424 TGGTTTACTGTTTGTCTGCTTC 57.107 40.909 0.00 0.00 0.00 3.86
6647 9118 4.265893 TGGTTTACTGTTTGTCTGCTTCA 58.734 39.130 0.00 0.00 0.00 3.02
6648 9119 4.702612 TGGTTTACTGTTTGTCTGCTTCAA 59.297 37.500 0.00 0.00 0.00 2.69
6649 9120 5.034797 GGTTTACTGTTTGTCTGCTTCAAC 58.965 41.667 0.00 0.00 0.00 3.18
6650 9121 4.893424 TTACTGTTTGTCTGCTTCAACC 57.107 40.909 0.00 0.00 0.00 3.77
6651 9122 3.004752 ACTGTTTGTCTGCTTCAACCT 57.995 42.857 0.00 0.00 0.00 3.50
6652 9123 4.150897 ACTGTTTGTCTGCTTCAACCTA 57.849 40.909 0.00 0.00 0.00 3.08
6653 9124 4.130118 ACTGTTTGTCTGCTTCAACCTAG 58.870 43.478 0.00 0.00 0.00 3.02
6654 9125 2.878406 TGTTTGTCTGCTTCAACCTAGC 59.122 45.455 0.00 0.00 39.10 3.42
6655 9126 3.142174 GTTTGTCTGCTTCAACCTAGCT 58.858 45.455 0.00 0.00 39.38 3.32
6656 9127 3.492102 TTGTCTGCTTCAACCTAGCTT 57.508 42.857 0.00 0.00 39.38 3.74
6657 9128 4.617253 TTGTCTGCTTCAACCTAGCTTA 57.383 40.909 0.00 0.00 39.38 3.09
6658 9129 4.826274 TGTCTGCTTCAACCTAGCTTAT 57.174 40.909 0.00 0.00 39.38 1.73
6659 9130 4.507710 TGTCTGCTTCAACCTAGCTTATG 58.492 43.478 0.00 0.00 39.38 1.90
6660 9131 4.222810 TGTCTGCTTCAACCTAGCTTATGA 59.777 41.667 0.00 0.00 39.38 2.15
6661 9132 5.104776 TGTCTGCTTCAACCTAGCTTATGAT 60.105 40.000 0.00 0.00 39.38 2.45
6662 9133 5.465056 GTCTGCTTCAACCTAGCTTATGATC 59.535 44.000 0.00 0.00 39.38 2.92
6663 9134 4.371786 TGCTTCAACCTAGCTTATGATCG 58.628 43.478 0.00 0.00 39.38 3.69
6664 9135 3.185391 GCTTCAACCTAGCTTATGATCGC 59.815 47.826 0.00 0.00 35.74 4.58
6665 9136 4.626042 CTTCAACCTAGCTTATGATCGCT 58.374 43.478 0.00 0.00 40.15 4.93
6666 9137 5.773575 CTTCAACCTAGCTTATGATCGCTA 58.226 41.667 0.00 0.94 37.68 4.26
6667 9138 5.122512 TCAACCTAGCTTATGATCGCTAC 57.877 43.478 0.00 0.00 37.68 3.58
6668 9139 4.827835 TCAACCTAGCTTATGATCGCTACT 59.172 41.667 0.00 0.00 37.68 2.57
6669 9140 5.302059 TCAACCTAGCTTATGATCGCTACTT 59.698 40.000 0.00 0.00 37.68 2.24
6670 9141 5.127693 ACCTAGCTTATGATCGCTACTTG 57.872 43.478 0.00 0.00 37.68 3.16
6671 9142 4.585162 ACCTAGCTTATGATCGCTACTTGT 59.415 41.667 0.00 0.00 37.68 3.16
6672 9143 4.920340 CCTAGCTTATGATCGCTACTTGTG 59.080 45.833 0.00 0.00 37.68 3.33
6673 9144 3.126831 AGCTTATGATCGCTACTTGTGC 58.873 45.455 0.00 0.00 34.11 4.57
6674 9145 2.221981 GCTTATGATCGCTACTTGTGCC 59.778 50.000 0.00 0.00 0.00 5.01
6675 9146 2.134201 TATGATCGCTACTTGTGCCG 57.866 50.000 0.00 0.00 0.00 5.69
6676 9147 1.154205 ATGATCGCTACTTGTGCCGC 61.154 55.000 0.00 0.00 0.00 6.53
6677 9148 2.511600 ATCGCTACTTGTGCCGCC 60.512 61.111 0.00 0.00 0.00 6.13
6678 9149 3.309436 ATCGCTACTTGTGCCGCCA 62.309 57.895 0.00 0.00 0.00 5.69
6679 9150 3.490759 CGCTACTTGTGCCGCCAG 61.491 66.667 0.00 0.00 0.00 4.85
6680 9151 2.358737 GCTACTTGTGCCGCCAGT 60.359 61.111 0.00 0.00 0.00 4.00
6681 9152 1.966451 GCTACTTGTGCCGCCAGTT 60.966 57.895 0.00 0.00 0.00 3.16
6682 9153 1.912371 GCTACTTGTGCCGCCAGTTC 61.912 60.000 0.00 0.00 0.00 3.01
6683 9154 0.320771 CTACTTGTGCCGCCAGTTCT 60.321 55.000 0.00 0.00 0.00 3.01
6684 9155 0.107831 TACTTGTGCCGCCAGTTCTT 59.892 50.000 0.00 0.00 0.00 2.52
6685 9156 1.283793 CTTGTGCCGCCAGTTCTTG 59.716 57.895 0.00 0.00 0.00 3.02
6686 9157 2.737932 CTTGTGCCGCCAGTTCTTGC 62.738 60.000 0.00 0.00 0.00 4.01
6705 9176 2.672961 CGAGAGCATGGTTTAGTCCA 57.327 50.000 0.00 0.00 42.01 4.02
6706 9177 2.972625 CGAGAGCATGGTTTAGTCCAA 58.027 47.619 0.00 0.00 41.09 3.53
6707 9178 2.673368 CGAGAGCATGGTTTAGTCCAAC 59.327 50.000 0.00 0.00 41.09 3.77
6708 9179 2.673368 GAGAGCATGGTTTAGTCCAACG 59.327 50.000 0.00 0.00 41.09 4.10
6709 9180 2.301870 AGAGCATGGTTTAGTCCAACGA 59.698 45.455 0.00 0.00 41.09 3.85
6710 9181 3.071479 GAGCATGGTTTAGTCCAACGAA 58.929 45.455 0.00 0.00 41.09 3.85
6711 9182 3.074412 AGCATGGTTTAGTCCAACGAAG 58.926 45.455 0.00 0.00 41.09 3.79
6712 9183 2.414161 GCATGGTTTAGTCCAACGAAGC 60.414 50.000 0.00 0.00 41.09 3.86
6713 9184 2.922740 TGGTTTAGTCCAACGAAGCT 57.077 45.000 0.00 0.00 34.24 3.74
6714 9185 4.250464 CATGGTTTAGTCCAACGAAGCTA 58.750 43.478 0.00 0.00 41.09 3.32
6715 9186 4.339872 TGGTTTAGTCCAACGAAGCTAA 57.660 40.909 0.00 0.00 34.24 3.09
6716 9187 4.312443 TGGTTTAGTCCAACGAAGCTAAG 58.688 43.478 0.00 0.00 34.24 2.18
6717 9188 3.124806 GGTTTAGTCCAACGAAGCTAAGC 59.875 47.826 0.00 0.00 0.00 3.09
6718 9189 2.273370 TAGTCCAACGAAGCTAAGCG 57.727 50.000 0.00 0.00 0.00 4.68
6719 9190 0.389948 AGTCCAACGAAGCTAAGCGG 60.390 55.000 8.17 1.03 0.00 5.52
6720 9191 0.669625 GTCCAACGAAGCTAAGCGGT 60.670 55.000 8.17 0.00 0.00 5.68
6721 9192 0.669318 TCCAACGAAGCTAAGCGGTG 60.669 55.000 12.89 12.89 44.29 4.94
6722 9193 0.949105 CCAACGAAGCTAAGCGGTGT 60.949 55.000 16.89 0.00 43.24 4.16
6723 9194 0.865769 CAACGAAGCTAAGCGGTGTT 59.134 50.000 11.95 0.00 40.13 3.32
6724 9195 1.263217 CAACGAAGCTAAGCGGTGTTT 59.737 47.619 11.95 0.00 40.13 2.83
6725 9196 2.443887 ACGAAGCTAAGCGGTGTTTA 57.556 45.000 8.17 0.00 0.00 2.01
6726 9197 2.758009 ACGAAGCTAAGCGGTGTTTAA 58.242 42.857 8.17 0.00 0.00 1.52
6727 9198 3.132925 ACGAAGCTAAGCGGTGTTTAAA 58.867 40.909 8.17 0.00 0.00 1.52
6728 9199 3.059393 ACGAAGCTAAGCGGTGTTTAAAC 60.059 43.478 11.54 11.54 0.00 2.01
6729 9200 3.666111 CGAAGCTAAGCGGTGTTTAAACC 60.666 47.826 15.59 7.02 36.82 3.27
6737 9208 2.699251 GGTGTTTAAACCGCTGAAGG 57.301 50.000 15.59 0.00 37.30 3.46
6738 9209 1.335597 GGTGTTTAAACCGCTGAAGGC 60.336 52.381 15.59 0.00 37.64 4.35
6739 9210 0.955905 TGTTTAAACCGCTGAAGGCC 59.044 50.000 15.59 0.00 37.74 5.19
6740 9211 0.109919 GTTTAAACCGCTGAAGGCCG 60.110 55.000 7.12 0.00 37.74 6.13
6741 9212 1.858372 TTTAAACCGCTGAAGGCCGC 61.858 55.000 0.00 0.00 37.74 6.53
6778 9254 3.260632 GCAGTTCCTTTTCTCCTCTCTCT 59.739 47.826 0.00 0.00 0.00 3.10
6811 9287 1.573108 GGAGGAGAACAGATCCCACA 58.427 55.000 0.00 0.00 37.57 4.17
6826 9302 4.344865 ACAAATCCACCGCCGGCT 62.345 61.111 26.68 2.78 0.00 5.52
6903 9379 3.145551 CCGGTGCTAGGCTACGGT 61.146 66.667 11.88 0.00 41.06 4.83
6921 9397 5.330648 ACGGTATGTAGATAGGTTAGGGT 57.669 43.478 0.00 0.00 0.00 4.34
6941 9417 3.523087 TAGTTTGTGCAGCGGCGGA 62.523 57.895 9.78 0.00 45.35 5.54
6948 9424 2.032634 TGCAGCGGCGGAGTTTTAG 61.033 57.895 9.78 0.00 45.35 1.85
6959 9438 2.808933 CGGAGTTTTAGTGGAGGCAACA 60.809 50.000 0.00 0.00 41.41 3.33
6962 9441 3.626930 AGTTTTAGTGGAGGCAACAACA 58.373 40.909 0.00 0.00 41.41 3.33
6987 9466 3.992943 TCCAACGAATAAGGTGTCCAT 57.007 42.857 0.00 0.00 0.00 3.41
7083 9563 1.395954 GACCGGCGATGTTAGGTTTTC 59.604 52.381 9.30 0.00 37.07 2.29
7086 9566 1.729284 GGCGATGTTAGGTTTTCCGA 58.271 50.000 0.00 0.00 46.35 4.55
7116 9596 4.096003 CGGCGGTGACCCCATCTT 62.096 66.667 0.00 0.00 0.00 2.40
7168 9648 2.591715 GGTGCGTGCTCCAACACT 60.592 61.111 8.01 0.00 38.45 3.55
7181 9661 2.365617 TCCAACACTGTCTTGGAGTCTC 59.634 50.000 12.73 0.00 41.92 3.36
7200 9680 7.256012 GGAGTCTCGGAGATTTATTTAGGATGT 60.256 40.741 11.46 0.00 33.89 3.06
7206 9686 7.507956 TCGGAGATTTATTTAGGATGTAGTGGA 59.492 37.037 0.00 0.00 0.00 4.02
7221 9701 1.072331 AGTGGATCAGCGTTTGTCCTT 59.928 47.619 0.00 0.00 31.90 3.36
7262 9742 2.437897 CCTGAGCAGGGCTGGTTT 59.562 61.111 8.69 0.00 44.87 3.27
7275 9755 1.202510 GCTGGTTTGGTGCATGTCAAA 60.203 47.619 8.19 8.19 0.00 2.69
7284 9764 1.205179 GTGCATGTCAAATGGATGGCA 59.795 47.619 0.00 0.00 39.61 4.92
7316 9796 0.320247 AGTGCTCTTCTGCGACTTGG 60.320 55.000 0.00 0.00 35.36 3.61
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.316029 CAGTTTCATCACACCAGAAAGCA 59.684 43.478 0.00 0.00 32.48 3.91
1 2 3.854784 GCAGTTTCATCACACCAGAAAGC 60.855 47.826 0.00 0.00 32.48 3.51
102 103 1.664016 CGAGCGCTTCAACTTTGCAAT 60.664 47.619 13.26 0.00 0.00 3.56
104 105 1.279539 CGAGCGCTTCAACTTTGCA 59.720 52.632 13.26 0.00 0.00 4.08
105 106 1.441016 CCGAGCGCTTCAACTTTGC 60.441 57.895 13.26 0.00 0.00 3.68
135 136 0.812811 CATGCCACCTGACGATGAGG 60.813 60.000 0.00 0.00 36.57 3.86
177 178 1.301401 TGGAGTAGTTGCCACGCAC 60.301 57.895 0.00 0.00 38.71 5.34
241 1693 1.453379 CAGATGGGCCAAGAGCAGG 60.453 63.158 11.89 0.00 46.50 4.85
312 1767 2.031870 GACCAAAAGCACTCCAGGTTT 58.968 47.619 0.00 0.00 40.59 3.27
407 1870 2.361610 AGCGGGGGTCAATTGCTG 60.362 61.111 0.00 0.00 33.99 4.41
450 1913 0.108615 GTGTGAGGTGGACGGAGATG 60.109 60.000 0.00 0.00 0.00 2.90
490 1953 2.776312 AGTGCGTGTATATGTCTCGG 57.224 50.000 0.00 0.00 0.00 4.63
550 2013 8.257602 ACTGTAACCCCAAAAGATGTTTTATT 57.742 30.769 0.00 0.00 33.93 1.40
551 2014 7.849322 ACTGTAACCCCAAAAGATGTTTTAT 57.151 32.000 0.00 0.00 33.93 1.40
553 2016 6.608002 TGTACTGTAACCCCAAAAGATGTTTT 59.392 34.615 0.00 0.00 36.22 2.43
554 2017 6.130569 TGTACTGTAACCCCAAAAGATGTTT 58.869 36.000 0.00 0.00 0.00 2.83
555 2018 5.697067 TGTACTGTAACCCCAAAAGATGTT 58.303 37.500 0.00 0.00 0.00 2.71
556 2019 5.313280 TGTACTGTAACCCCAAAAGATGT 57.687 39.130 0.00 0.00 0.00 3.06
557 2020 5.533154 TGTTGTACTGTAACCCCAAAAGATG 59.467 40.000 0.00 0.00 0.00 2.90
558 2021 5.697067 TGTTGTACTGTAACCCCAAAAGAT 58.303 37.500 0.00 0.00 0.00 2.40
559 2022 5.113446 TGTTGTACTGTAACCCCAAAAGA 57.887 39.130 0.00 0.00 0.00 2.52
560 2023 6.399639 AATGTTGTACTGTAACCCCAAAAG 57.600 37.500 0.00 0.00 0.00 2.27
561 2024 6.793505 AAATGTTGTACTGTAACCCCAAAA 57.206 33.333 0.00 0.00 0.00 2.44
562 2025 6.793505 AAAATGTTGTACTGTAACCCCAAA 57.206 33.333 0.00 0.00 0.00 3.28
563 2026 6.793505 AAAAATGTTGTACTGTAACCCCAA 57.206 33.333 0.00 0.00 0.00 4.12
664 2133 9.914131 GTCATCAATCATGTTGCTATACTACTA 57.086 33.333 0.00 0.00 33.66 1.82
665 2134 7.596621 CGTCATCAATCATGTTGCTATACTACT 59.403 37.037 0.00 0.00 33.66 2.57
666 2135 7.620188 GCGTCATCAATCATGTTGCTATACTAC 60.620 40.741 0.00 0.00 33.54 2.73
702 2172 4.547671 TCTCCCTCCCGGAATATCATATC 58.452 47.826 0.73 0.00 41.40 1.63
710 2180 1.771255 CAAGATTCTCCCTCCCGGAAT 59.229 52.381 0.73 0.00 41.40 3.01
711 2181 1.204146 CAAGATTCTCCCTCCCGGAA 58.796 55.000 0.73 0.00 41.40 4.30
713 2183 1.147153 GCAAGATTCTCCCTCCCGG 59.853 63.158 0.00 0.00 0.00 5.73
714 2184 0.253044 TTGCAAGATTCTCCCTCCCG 59.747 55.000 0.00 0.00 0.00 5.14
812 3079 6.860539 GCAGAGAAGAGGAAAAAGAAAATGAC 59.139 38.462 0.00 0.00 0.00 3.06
948 3224 2.235699 GCGATTTACCCGTCGAGGC 61.236 63.158 0.00 0.00 40.11 4.70
1224 3500 1.521457 GAGCGCGATGATGTTGGGA 60.521 57.895 12.10 0.00 0.00 4.37
1375 3662 4.141620 CGGCTCCCAATTCTAGGCATATAT 60.142 45.833 0.00 0.00 35.66 0.86
1376 3663 3.197766 CGGCTCCCAATTCTAGGCATATA 59.802 47.826 0.00 0.00 35.66 0.86
1466 3754 3.140144 AGGGGGAGACATCAAGTTCAAAA 59.860 43.478 0.00 0.00 0.00 2.44
1469 3757 1.909302 GAGGGGGAGACATCAAGTTCA 59.091 52.381 0.00 0.00 0.00 3.18
1552 3842 9.803315 AAAGAAAAACAGTTATTCTTCTGGAAC 57.197 29.630 0.97 0.00 41.28 3.62
1676 3966 5.855045 ACCCTTTTATGCCGTAGAAGATAG 58.145 41.667 0.00 0.00 28.41 2.08
1708 3998 4.265320 GCCGAATAAAATGCTTAGCAACAC 59.735 41.667 12.08 0.00 43.62 3.32
1724 4014 0.532862 GCTTGCCTAGCTGCCGAATA 60.533 55.000 0.00 0.00 46.77 1.75
1743 4033 0.394565 GACGGGAGATGGGGAAGATG 59.605 60.000 0.00 0.00 0.00 2.90
1776 4067 4.761227 TGAGCAAAGCACAGAACATGAATA 59.239 37.500 0.00 0.00 0.00 1.75
1792 4083 6.207221 TGCAGAAACAAGAGATTATGAGCAAA 59.793 34.615 0.00 0.00 0.00 3.68
1918 4209 4.363999 CCAGACTCTTGATCACGGAATAC 58.636 47.826 0.00 0.00 0.00 1.89
1919 4210 3.181475 GCCAGACTCTTGATCACGGAATA 60.181 47.826 0.00 0.00 0.00 1.75
1923 4214 0.247460 TGCCAGACTCTTGATCACGG 59.753 55.000 0.00 0.00 0.00 4.94
1940 4231 9.214953 CGTATTGAGAGATTGTATTTCTTTTGC 57.785 33.333 0.00 0.00 0.00 3.68
1953 4244 4.832248 TCAAGCAACCGTATTGAGAGATT 58.168 39.130 1.05 0.00 0.00 2.40
1955 4246 3.953712 TCAAGCAACCGTATTGAGAGA 57.046 42.857 1.05 0.00 0.00 3.10
2059 4351 3.942829 TCCGAAGTCAGCAATCTTCAAT 58.057 40.909 12.63 0.00 39.70 2.57
2127 4419 7.095187 CGAGGAAAGTAGCAACTAATGTTCTTT 60.095 37.037 0.00 0.00 33.75 2.52
2128 4420 6.369065 CGAGGAAAGTAGCAACTAATGTTCTT 59.631 38.462 0.00 0.00 33.75 2.52
2154 4446 4.841813 TCAGTCCACTAAACCAAGGTCATA 59.158 41.667 0.00 0.00 0.00 2.15
2421 4715 5.879223 CACATCAGTTAAGAAAGGAGCAGAT 59.121 40.000 0.00 0.00 0.00 2.90
2471 4765 5.174761 GTGTGCTATTTCGCAATTGAAACAA 59.825 36.000 10.34 0.00 42.32 2.83
2472 4766 4.679197 GTGTGCTATTTCGCAATTGAAACA 59.321 37.500 10.34 0.00 42.32 2.83
2520 4814 7.318141 CAATGAAAGATGCAAGTCCATTAAGT 58.682 34.615 0.00 0.00 0.00 2.24
3884 6229 7.878477 AAACATGCAATTGTGATGACTTTAG 57.122 32.000 20.17 0.34 0.00 1.85
4022 6367 7.985752 CAGAGTAAATAAAAACGGAGGGAGTAT 59.014 37.037 0.00 0.00 0.00 2.12
4213 6558 9.535878 AAGTCAAACTTTGTAAACTTTGACAAA 57.464 25.926 26.14 12.18 44.72 2.83
4396 6741 6.821665 TGGTAGCACAAAGATATTACCTCAAC 59.178 38.462 0.00 0.00 33.42 3.18
5058 7403 1.421646 AGAGCAGCTAAGTTTGGTGGT 59.578 47.619 18.53 18.53 44.58 4.16
5106 7451 0.796312 ACTGTTGCCTGTTTATCGCG 59.204 50.000 0.00 0.00 0.00 5.87
5109 7454 3.077359 AGCAGACTGTTGCCTGTTTATC 58.923 45.455 3.99 0.00 45.18 1.75
5163 7508 7.095910 CAGATCCATGTGAAGTACCAGATATC 58.904 42.308 0.00 0.00 0.00 1.63
5319 7664 2.972713 AGAAGCTCCCACACAAAGACTA 59.027 45.455 0.00 0.00 0.00 2.59
5320 7665 1.771255 AGAAGCTCCCACACAAAGACT 59.229 47.619 0.00 0.00 0.00 3.24
5321 7666 2.262423 AGAAGCTCCCACACAAAGAC 57.738 50.000 0.00 0.00 0.00 3.01
5322 7667 3.869912 GCATAGAAGCTCCCACACAAAGA 60.870 47.826 0.00 0.00 0.00 2.52
5323 7668 2.421424 GCATAGAAGCTCCCACACAAAG 59.579 50.000 0.00 0.00 0.00 2.77
5324 7669 2.224744 TGCATAGAAGCTCCCACACAAA 60.225 45.455 0.00 0.00 34.99 2.83
5325 7670 1.350684 TGCATAGAAGCTCCCACACAA 59.649 47.619 0.00 0.00 34.99 3.33
5326 7671 0.983467 TGCATAGAAGCTCCCACACA 59.017 50.000 0.00 0.00 34.99 3.72
5327 7672 1.065854 AGTGCATAGAAGCTCCCACAC 60.066 52.381 0.00 0.00 34.99 3.82
5328 7673 1.065926 CAGTGCATAGAAGCTCCCACA 60.066 52.381 0.00 0.00 34.99 4.17
5329 7674 1.661341 CAGTGCATAGAAGCTCCCAC 58.339 55.000 0.00 0.00 34.99 4.61
5330 7675 0.543277 CCAGTGCATAGAAGCTCCCA 59.457 55.000 0.00 0.00 34.99 4.37
5331 7676 0.179034 CCCAGTGCATAGAAGCTCCC 60.179 60.000 0.00 0.00 34.99 4.30
5332 7677 0.543749 ACCCAGTGCATAGAAGCTCC 59.456 55.000 0.00 0.00 34.99 4.70
5333 7678 1.484240 AGACCCAGTGCATAGAAGCTC 59.516 52.381 0.00 0.00 34.99 4.09
5334 7679 1.209019 CAGACCCAGTGCATAGAAGCT 59.791 52.381 0.00 0.00 34.99 3.74
5335 7680 1.065854 ACAGACCCAGTGCATAGAAGC 60.066 52.381 0.00 0.00 0.00 3.86
5336 7681 2.419297 GGACAGACCCAGTGCATAGAAG 60.419 54.545 0.00 0.00 0.00 2.85
5337 7682 1.555075 GGACAGACCCAGTGCATAGAA 59.445 52.381 0.00 0.00 0.00 2.10
5338 7683 1.195115 GGACAGACCCAGTGCATAGA 58.805 55.000 0.00 0.00 0.00 1.98
5339 7684 1.198713 AGGACAGACCCAGTGCATAG 58.801 55.000 0.00 0.00 40.05 2.23
5340 7685 1.656587 AAGGACAGACCCAGTGCATA 58.343 50.000 0.00 0.00 40.05 3.14
5341 7686 0.773644 AAAGGACAGACCCAGTGCAT 59.226 50.000 0.00 0.00 40.05 3.96
5342 7687 0.550914 AAAAGGACAGACCCAGTGCA 59.449 50.000 0.00 0.00 40.05 4.57
5343 7688 0.954452 CAAAAGGACAGACCCAGTGC 59.046 55.000 0.00 0.00 40.05 4.40
5344 7689 2.638480 TCAAAAGGACAGACCCAGTG 57.362 50.000 0.00 0.00 40.05 3.66
5345 7690 2.711009 TCATCAAAAGGACAGACCCAGT 59.289 45.455 0.00 0.00 40.05 4.00
5346 7691 3.077359 GTCATCAAAAGGACAGACCCAG 58.923 50.000 0.00 0.00 36.24 4.45
5347 7692 2.711009 AGTCATCAAAAGGACAGACCCA 59.289 45.455 0.00 0.00 38.66 4.51
5348 7693 3.008485 AGAGTCATCAAAAGGACAGACCC 59.992 47.826 0.00 0.00 38.66 4.46
5349 7694 4.020662 AGAGAGTCATCAAAAGGACAGACC 60.021 45.833 0.00 0.00 38.66 3.85
5350 7695 5.146010 AGAGAGTCATCAAAAGGACAGAC 57.854 43.478 0.00 0.00 38.66 3.51
5351 7696 6.013379 ACTAGAGAGTCATCAAAAGGACAGA 58.987 40.000 0.00 0.00 38.66 3.41
5352 7697 6.279513 ACTAGAGAGTCATCAAAAGGACAG 57.720 41.667 0.00 0.00 38.66 3.51
5366 7711 5.071115 AGCAAGGAAACAAAGACTAGAGAGT 59.929 40.000 0.00 0.00 39.20 3.24
5367 7712 5.546526 AGCAAGGAAACAAAGACTAGAGAG 58.453 41.667 0.00 0.00 0.00 3.20
5368 7713 5.552870 AGCAAGGAAACAAAGACTAGAGA 57.447 39.130 0.00 0.00 0.00 3.10
5369 7714 6.293680 GGAAAGCAAGGAAACAAAGACTAGAG 60.294 42.308 0.00 0.00 0.00 2.43
5370 7715 5.531287 GGAAAGCAAGGAAACAAAGACTAGA 59.469 40.000 0.00 0.00 0.00 2.43
5371 7716 5.532779 AGGAAAGCAAGGAAACAAAGACTAG 59.467 40.000 0.00 0.00 0.00 2.57
5589 8056 5.420104 CCTGCCACCTTTTATCTTCAAAGAT 59.580 40.000 9.98 9.98 46.85 2.40
5717 8184 4.566278 GCCCCTTCATAGTGATATCATGCA 60.566 45.833 9.02 0.00 0.00 3.96
5718 8185 3.944015 GCCCCTTCATAGTGATATCATGC 59.056 47.826 9.02 0.00 0.00 4.06
5879 8346 3.253838 ACGGCCCCAAGCAAGGTA 61.254 61.111 0.00 0.00 46.50 3.08
5913 8380 6.151985 TCAGCACAAAAGAAAGTCCTACAAAA 59.848 34.615 0.00 0.00 0.00 2.44
5920 8387 5.470098 TCACTATCAGCACAAAAGAAAGTCC 59.530 40.000 0.00 0.00 0.00 3.85
6052 8519 0.251297 TGCTGTTGGTTCTGGGATGG 60.251 55.000 0.00 0.00 0.00 3.51
6078 8545 3.065095 CGGGTGGACAAAAGTCGTAAAAA 59.935 43.478 0.00 0.00 0.00 1.94
6085 8552 0.534203 TGAGCGGGTGGACAAAAGTC 60.534 55.000 0.00 0.00 0.00 3.01
6087 8554 1.247567 AATGAGCGGGTGGACAAAAG 58.752 50.000 0.00 0.00 0.00 2.27
6100 8567 6.276091 AGACCAGAAAGAAAACAAAATGAGC 58.724 36.000 0.00 0.00 0.00 4.26
6229 8696 3.897122 AAAGGCGGGTTGAGGGCA 61.897 61.111 0.00 0.00 0.00 5.36
6295 8762 1.669115 GCTGAGCCTTGCGTTGAGA 60.669 57.895 0.00 0.00 0.00 3.27
6500 8968 4.522689 ACGCACACACGCCTCACA 62.523 61.111 0.00 0.00 36.19 3.58
6507 8975 0.370615 TAACAACACACGCACACACG 59.629 50.000 0.00 0.00 39.50 4.49
6531 8999 9.519191 TGGTACAGAATAAAGCATGCATATAAT 57.481 29.630 21.98 7.38 0.00 1.28
6533 9001 8.916628 TTGGTACAGAATAAAGCATGCATATA 57.083 30.769 21.98 9.93 42.39 0.86
6593 9064 4.508124 CAGTACAACACCTTCAGTCTGTTC 59.492 45.833 0.00 0.00 0.00 3.18
6603 9074 5.279506 CCATAGACAGTCAGTACAACACCTT 60.280 44.000 2.66 0.00 0.00 3.50
6604 9075 4.220821 CCATAGACAGTCAGTACAACACCT 59.779 45.833 2.66 0.00 0.00 4.00
6605 9076 4.021368 ACCATAGACAGTCAGTACAACACC 60.021 45.833 2.66 0.00 0.00 4.16
6606 9077 5.135508 ACCATAGACAGTCAGTACAACAC 57.864 43.478 2.66 0.00 0.00 3.32
6607 9078 5.801531 AACCATAGACAGTCAGTACAACA 57.198 39.130 2.66 0.00 0.00 3.33
6608 9079 7.328737 CAGTAAACCATAGACAGTCAGTACAAC 59.671 40.741 2.66 0.00 0.00 3.32
6609 9080 7.014905 ACAGTAAACCATAGACAGTCAGTACAA 59.985 37.037 2.66 0.00 0.00 2.41
6610 9081 6.492429 ACAGTAAACCATAGACAGTCAGTACA 59.508 38.462 2.66 0.00 0.00 2.90
6611 9082 6.921914 ACAGTAAACCATAGACAGTCAGTAC 58.078 40.000 2.66 0.00 0.00 2.73
6612 9083 7.534723 AACAGTAAACCATAGACAGTCAGTA 57.465 36.000 2.66 0.00 0.00 2.74
6613 9084 6.420913 AACAGTAAACCATAGACAGTCAGT 57.579 37.500 2.66 0.00 0.00 3.41
6614 9085 6.706270 ACAAACAGTAAACCATAGACAGTCAG 59.294 38.462 2.66 0.00 0.00 3.51
6615 9086 6.588204 ACAAACAGTAAACCATAGACAGTCA 58.412 36.000 2.66 0.00 0.00 3.41
6616 9087 6.929606 AGACAAACAGTAAACCATAGACAGTC 59.070 38.462 0.00 0.00 0.00 3.51
6617 9088 6.706270 CAGACAAACAGTAAACCATAGACAGT 59.294 38.462 0.00 0.00 0.00 3.55
6618 9089 6.347725 GCAGACAAACAGTAAACCATAGACAG 60.348 42.308 0.00 0.00 0.00 3.51
6619 9090 5.468746 GCAGACAAACAGTAAACCATAGACA 59.531 40.000 0.00 0.00 0.00 3.41
6620 9091 5.701290 AGCAGACAAACAGTAAACCATAGAC 59.299 40.000 0.00 0.00 0.00 2.59
6621 9092 5.865085 AGCAGACAAACAGTAAACCATAGA 58.135 37.500 0.00 0.00 0.00 1.98
6622 9093 6.204688 TGAAGCAGACAAACAGTAAACCATAG 59.795 38.462 0.00 0.00 0.00 2.23
6623 9094 6.058833 TGAAGCAGACAAACAGTAAACCATA 58.941 36.000 0.00 0.00 0.00 2.74
6624 9095 4.887071 TGAAGCAGACAAACAGTAAACCAT 59.113 37.500 0.00 0.00 0.00 3.55
6625 9096 4.265893 TGAAGCAGACAAACAGTAAACCA 58.734 39.130 0.00 0.00 0.00 3.67
6626 9097 4.893424 TGAAGCAGACAAACAGTAAACC 57.107 40.909 0.00 0.00 0.00 3.27
6627 9098 5.034797 GGTTGAAGCAGACAAACAGTAAAC 58.965 41.667 0.00 0.00 35.36 2.01
6628 9099 4.947388 AGGTTGAAGCAGACAAACAGTAAA 59.053 37.500 0.00 0.00 37.41 2.01
6629 9100 4.523083 AGGTTGAAGCAGACAAACAGTAA 58.477 39.130 0.00 0.00 37.41 2.24
6630 9101 4.150897 AGGTTGAAGCAGACAAACAGTA 57.849 40.909 0.00 0.00 37.41 2.74
6631 9102 3.004752 AGGTTGAAGCAGACAAACAGT 57.995 42.857 0.00 0.00 37.41 3.55
6632 9103 3.058639 GCTAGGTTGAAGCAGACAAACAG 60.059 47.826 0.00 0.00 39.83 3.16
6633 9104 2.878406 GCTAGGTTGAAGCAGACAAACA 59.122 45.455 0.00 0.00 39.83 2.83
6634 9105 3.142174 AGCTAGGTTGAAGCAGACAAAC 58.858 45.455 0.00 0.00 42.62 2.93
6635 9106 3.492102 AGCTAGGTTGAAGCAGACAAA 57.508 42.857 0.00 0.00 42.62 2.83
6636 9107 3.492102 AAGCTAGGTTGAAGCAGACAA 57.508 42.857 6.33 0.00 42.62 3.18
6637 9108 4.222810 TCATAAGCTAGGTTGAAGCAGACA 59.777 41.667 17.34 0.00 42.62 3.41
6638 9109 4.759782 TCATAAGCTAGGTTGAAGCAGAC 58.240 43.478 17.34 0.00 42.62 3.51
6639 9110 5.605534 GATCATAAGCTAGGTTGAAGCAGA 58.394 41.667 17.34 6.28 42.62 4.26
6640 9111 4.447054 CGATCATAAGCTAGGTTGAAGCAG 59.553 45.833 17.34 1.62 42.62 4.24
6641 9112 4.371786 CGATCATAAGCTAGGTTGAAGCA 58.628 43.478 17.34 0.00 42.62 3.91
6642 9113 3.185391 GCGATCATAAGCTAGGTTGAAGC 59.815 47.826 17.34 12.84 40.40 3.86
6643 9114 4.626042 AGCGATCATAAGCTAGGTTGAAG 58.374 43.478 17.34 6.92 42.60 3.02
6644 9115 4.672587 AGCGATCATAAGCTAGGTTGAA 57.327 40.909 17.34 0.00 42.60 2.69
6645 9116 4.827835 AGTAGCGATCATAAGCTAGGTTGA 59.172 41.667 17.34 8.07 45.32 3.18
6646 9117 5.127693 AGTAGCGATCATAAGCTAGGTTG 57.872 43.478 17.34 2.23 45.32 3.77
6647 9118 5.069251 ACAAGTAGCGATCATAAGCTAGGTT 59.931 40.000 12.54 12.54 45.32 3.50
6648 9119 4.585162 ACAAGTAGCGATCATAAGCTAGGT 59.415 41.667 0.84 0.00 45.32 3.08
6649 9120 4.920340 CACAAGTAGCGATCATAAGCTAGG 59.080 45.833 0.84 0.00 45.32 3.02
6650 9121 4.384247 GCACAAGTAGCGATCATAAGCTAG 59.616 45.833 0.84 0.00 45.32 3.42
6651 9122 4.299155 GCACAAGTAGCGATCATAAGCTA 58.701 43.478 0.00 0.00 44.15 3.32
6652 9123 3.126831 GCACAAGTAGCGATCATAAGCT 58.873 45.455 0.00 0.00 46.53 3.74
6653 9124 2.221981 GGCACAAGTAGCGATCATAAGC 59.778 50.000 0.00 0.00 0.00 3.09
6654 9125 2.472861 CGGCACAAGTAGCGATCATAAG 59.527 50.000 0.00 0.00 0.00 1.73
6655 9126 2.469826 CGGCACAAGTAGCGATCATAA 58.530 47.619 0.00 0.00 0.00 1.90
6656 9127 1.868109 GCGGCACAAGTAGCGATCATA 60.868 52.381 0.00 0.00 0.00 2.15
6657 9128 1.154205 GCGGCACAAGTAGCGATCAT 61.154 55.000 0.00 0.00 0.00 2.45
6658 9129 1.809619 GCGGCACAAGTAGCGATCA 60.810 57.895 0.00 0.00 0.00 2.92
6659 9130 2.526120 GGCGGCACAAGTAGCGATC 61.526 63.158 3.07 0.00 0.00 3.69
6660 9131 2.511600 GGCGGCACAAGTAGCGAT 60.512 61.111 3.07 0.00 0.00 4.58
6661 9132 3.932580 CTGGCGGCACAAGTAGCGA 62.933 63.158 7.97 0.00 0.00 4.93
6662 9133 3.490759 CTGGCGGCACAAGTAGCG 61.491 66.667 7.97 0.00 0.00 4.26
6663 9134 1.912371 GAACTGGCGGCACAAGTAGC 61.912 60.000 7.97 0.00 0.00 3.58
6664 9135 0.320771 AGAACTGGCGGCACAAGTAG 60.321 55.000 7.97 0.00 0.00 2.57
6665 9136 0.107831 AAGAACTGGCGGCACAAGTA 59.892 50.000 7.97 0.00 0.00 2.24
6666 9137 1.152963 AAGAACTGGCGGCACAAGT 60.153 52.632 7.97 1.06 0.00 3.16
6667 9138 1.283793 CAAGAACTGGCGGCACAAG 59.716 57.895 7.97 0.26 0.00 3.16
6668 9139 2.844451 GCAAGAACTGGCGGCACAA 61.844 57.895 7.97 0.00 0.00 3.33
6669 9140 3.286751 GCAAGAACTGGCGGCACA 61.287 61.111 7.97 0.00 0.00 4.57
6685 9156 1.291132 GGACTAAACCATGCTCTCGC 58.709 55.000 0.00 0.00 0.00 5.03
6686 9157 2.672961 TGGACTAAACCATGCTCTCG 57.327 50.000 0.00 0.00 34.77 4.04
6687 9158 2.673368 CGTTGGACTAAACCATGCTCTC 59.327 50.000 0.00 0.00 39.82 3.20
6688 9159 2.301870 TCGTTGGACTAAACCATGCTCT 59.698 45.455 0.00 0.00 39.82 4.09
6689 9160 2.695359 TCGTTGGACTAAACCATGCTC 58.305 47.619 0.00 0.00 39.82 4.26
6690 9161 2.851263 TCGTTGGACTAAACCATGCT 57.149 45.000 0.00 0.00 39.82 3.79
6691 9162 2.414161 GCTTCGTTGGACTAAACCATGC 60.414 50.000 0.00 0.00 39.82 4.06
6692 9163 3.074412 AGCTTCGTTGGACTAAACCATG 58.926 45.455 0.00 0.00 39.82 3.66
6693 9164 3.418684 AGCTTCGTTGGACTAAACCAT 57.581 42.857 0.00 0.00 39.82 3.55
6694 9165 2.922740 AGCTTCGTTGGACTAAACCA 57.077 45.000 0.00 0.00 38.24 3.67
6695 9166 3.124806 GCTTAGCTTCGTTGGACTAAACC 59.875 47.826 0.00 0.00 0.00 3.27
6696 9167 3.181533 CGCTTAGCTTCGTTGGACTAAAC 60.182 47.826 1.76 0.00 0.00 2.01
6697 9168 2.991190 CGCTTAGCTTCGTTGGACTAAA 59.009 45.455 1.76 0.00 0.00 1.85
6698 9169 2.602878 CGCTTAGCTTCGTTGGACTAA 58.397 47.619 1.76 0.00 0.00 2.24
6699 9170 1.135199 CCGCTTAGCTTCGTTGGACTA 60.135 52.381 1.76 0.00 0.00 2.59
6700 9171 0.389948 CCGCTTAGCTTCGTTGGACT 60.390 55.000 1.76 0.00 0.00 3.85
6701 9172 0.669625 ACCGCTTAGCTTCGTTGGAC 60.670 55.000 1.76 0.00 0.00 4.02
6702 9173 0.669318 CACCGCTTAGCTTCGTTGGA 60.669 55.000 1.76 0.00 0.00 3.53
6703 9174 0.949105 ACACCGCTTAGCTTCGTTGG 60.949 55.000 1.76 0.00 0.00 3.77
6704 9175 0.865769 AACACCGCTTAGCTTCGTTG 59.134 50.000 1.76 0.00 0.00 4.10
6705 9176 1.589803 AAACACCGCTTAGCTTCGTT 58.410 45.000 1.76 0.00 0.00 3.85
6706 9177 2.443887 TAAACACCGCTTAGCTTCGT 57.556 45.000 1.76 0.00 0.00 3.85
6707 9178 3.476181 GTTTAAACACCGCTTAGCTTCG 58.524 45.455 13.51 0.00 0.00 3.79
6708 9179 3.818387 GGTTTAAACACCGCTTAGCTTC 58.182 45.455 19.57 0.00 0.00 3.86
6709 9180 3.909776 GGTTTAAACACCGCTTAGCTT 57.090 42.857 19.57 0.00 0.00 3.74
6718 9189 1.335597 GCCTTCAGCGGTTTAAACACC 60.336 52.381 19.57 9.58 0.00 4.16
6719 9190 1.335597 GGCCTTCAGCGGTTTAAACAC 60.336 52.381 19.57 11.00 45.17 3.32
6720 9191 0.955905 GGCCTTCAGCGGTTTAAACA 59.044 50.000 19.57 0.00 45.17 2.83
6721 9192 0.109919 CGGCCTTCAGCGGTTTAAAC 60.110 55.000 9.98 9.98 45.17 2.01
6722 9193 1.858372 GCGGCCTTCAGCGGTTTAAA 61.858 55.000 0.00 0.00 45.17 1.52
6723 9194 2.329614 GCGGCCTTCAGCGGTTTAA 61.330 57.895 0.00 0.00 45.17 1.52
6724 9195 2.744709 GCGGCCTTCAGCGGTTTA 60.745 61.111 0.00 0.00 45.17 2.01
6778 9254 0.828762 TCCTCCCTCGGTTTTCACGA 60.829 55.000 0.00 0.00 38.79 4.35
6791 9267 0.833949 GTGGGATCTGTTCTCCTCCC 59.166 60.000 0.00 0.00 46.41 4.30
6811 9287 2.189521 CTAGCCGGCGGTGGATTT 59.810 61.111 28.82 2.71 0.00 2.17
6903 9379 9.584008 CAAACTAGACCCTAACCTATCTACATA 57.416 37.037 0.00 0.00 0.00 2.29
6921 9397 2.027073 CGCCGCTGCACAAACTAGA 61.027 57.895 0.00 0.00 37.32 2.43
6941 9417 3.626930 TGTTGTTGCCTCCACTAAAACT 58.373 40.909 0.00 0.00 0.00 2.66
6948 9424 0.951558 AACGATGTTGTTGCCTCCAC 59.048 50.000 0.00 0.00 0.00 4.02
6987 9466 1.758514 GTCGAGATGGAGGGAGCCA 60.759 63.158 0.00 0.00 43.23 4.75
7025 9504 2.278206 CATGACGCCGTCTCCTCG 60.278 66.667 19.12 0.00 33.15 4.63
7026 9505 1.517257 CACATGACGCCGTCTCCTC 60.517 63.158 19.12 0.00 33.15 3.71
7027 9506 2.214181 GACACATGACGCCGTCTCCT 62.214 60.000 19.12 0.14 33.15 3.69
7028 9507 1.805945 GACACATGACGCCGTCTCC 60.806 63.158 19.12 0.00 33.15 3.71
7030 9509 1.213013 GAGACACATGACGCCGTCT 59.787 57.895 19.12 0.92 41.32 4.18
7031 9510 0.388649 AAGAGACACATGACGCCGTC 60.389 55.000 10.96 10.96 0.00 4.79
7032 9511 0.667487 CAAGAGACACATGACGCCGT 60.667 55.000 0.00 0.00 0.00 5.68
7072 9552 3.822940 ACCACATTCGGAAAACCTAACA 58.177 40.909 0.00 0.00 0.00 2.41
7083 9563 2.173669 CCGCTGCTACCACATTCGG 61.174 63.158 0.00 0.00 32.06 4.30
7086 9566 2.819595 CGCCGCTGCTACCACATT 60.820 61.111 0.00 0.00 34.43 2.71
7115 9595 2.035321 GCCGGAGAACACAATTCCAAAA 59.965 45.455 5.05 0.00 0.00 2.44
7116 9596 1.611491 GCCGGAGAACACAATTCCAAA 59.389 47.619 5.05 0.00 0.00 3.28
7168 9648 2.516227 ATCTCCGAGACTCCAAGACA 57.484 50.000 0.00 0.00 0.00 3.41
7181 9661 7.667557 TCCACTACATCCTAAATAAATCTCCG 58.332 38.462 0.00 0.00 0.00 4.63
7200 9680 1.899814 AGGACAAACGCTGATCCACTA 59.100 47.619 0.00 0.00 33.33 2.74
7206 9686 2.480419 CGAAGAAAGGACAAACGCTGAT 59.520 45.455 0.00 0.00 0.00 2.90
7262 9742 1.826096 CCATCCATTTGACATGCACCA 59.174 47.619 0.00 0.00 0.00 4.17
7275 9755 2.440796 CTGCCCGTTGCCATCCAT 60.441 61.111 0.00 0.00 40.16 3.41
7284 9764 1.152963 AGCACTGAAACTGCCCGTT 60.153 52.632 0.00 0.00 35.01 4.44
7292 9772 1.193426 GTCGCAGAAGAGCACTGAAAC 59.807 52.381 0.00 0.00 39.69 2.78
7295 9775 0.676184 AAGTCGCAGAAGAGCACTGA 59.324 50.000 0.00 0.00 39.69 3.41
7316 9796 2.356382 AGATCCATCGTCTTCACTCGAC 59.644 50.000 0.00 0.00 38.85 4.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.