Multiple sequence alignment - TraesCS4A01G093600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS4A01G093600 chr4A 100.000 4348 0 0 1 4348 101401781 101406128 0.000000e+00 8030
1 TraesCS4A01G093600 chr4A 99.195 497 4 0 1 497 607376674 607376178 0.000000e+00 896
2 TraesCS4A01G093600 chr4B 95.061 3665 113 24 724 4348 449308014 449304378 0.000000e+00 5703
3 TraesCS4A01G093600 chr4D 97.262 2118 46 5 2234 4348 363926628 363924520 0.000000e+00 3579
4 TraesCS4A01G093600 chr4D 94.323 1603 46 11 666 2236 363928330 363926741 0.000000e+00 2414
5 TraesCS4A01G093600 chr6A 98.821 509 4 2 1 509 454429530 454430036 0.000000e+00 905
6 TraesCS4A01G093600 chr6A 88.462 104 11 1 493 596 580532273 580532171 1.640000e-24 124
7 TraesCS4A01G093600 chr6A 88.776 98 10 1 499 596 258132098 258132002 7.640000e-23 119
8 TraesCS4A01G093600 chr6A 82.031 128 22 1 1096 1223 611293842 611293716 1.650000e-19 108
9 TraesCS4A01G093600 chr7A 99.198 499 4 0 1 499 84756286 84756784 0.000000e+00 900
10 TraesCS4A01G093600 chr7A 98.802 501 5 1 1 501 332823774 332823275 0.000000e+00 891
11 TraesCS4A01G093600 chr3A 99.198 499 4 0 1 499 457934108 457934606 0.000000e+00 900
12 TraesCS4A01G093600 chr3A 88.571 105 11 1 493 597 715767562 715767665 4.560000e-25 126
13 TraesCS4A01G093600 chr3A 89.000 100 10 1 492 591 702494601 702494503 5.910000e-24 122
14 TraesCS4A01G093600 chr3A 88.119 101 11 1 493 593 345981492 345981591 7.640000e-23 119
15 TraesCS4A01G093600 chr2A 99.195 497 4 0 1 497 125630141 125629645 0.000000e+00 896
16 TraesCS4A01G093600 chr2A 98.805 502 5 1 1 501 172529918 172529417 0.000000e+00 893
17 TraesCS4A01G093600 chr2A 90.099 101 10 0 493 593 465557402 465557502 9.810000e-27 132
18 TraesCS4A01G093600 chrUn 98.998 499 3 1 1 497 380179265 380179763 0.000000e+00 893
19 TraesCS4A01G093600 chr1B 98.802 501 5 1 1 501 348477867 348478366 0.000000e+00 891
20 TraesCS4A01G093600 chr5A 88.679 106 9 2 499 602 681496155 681496259 4.560000e-25 126
21 TraesCS4A01G093600 chr5D 90.323 93 8 1 504 596 350229001 350228910 2.120000e-23 121
22 TraesCS4A01G093600 chr7D 84.298 121 14 5 479 596 147187051 147186933 3.550000e-21 113
23 TraesCS4A01G093600 chr6B 81.618 136 23 2 1096 1230 708625559 708625425 1.280000e-20 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS4A01G093600 chr4A 101401781 101406128 4347 False 8030.0 8030 100.0000 1 4348 1 chr4A.!!$F1 4347
1 TraesCS4A01G093600 chr4B 449304378 449308014 3636 True 5703.0 5703 95.0610 724 4348 1 chr4B.!!$R1 3624
2 TraesCS4A01G093600 chr4D 363924520 363928330 3810 True 2996.5 3579 95.7925 666 4348 2 chr4D.!!$R1 3682
3 TraesCS4A01G093600 chr6A 454429530 454430036 506 False 905.0 905 98.8210 1 509 1 chr6A.!!$F1 508
4 TraesCS4A01G093600 chr2A 172529417 172529918 501 True 893.0 893 98.8050 1 501 1 chr2A.!!$R2 500

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
546 547 0.097325 CTAAAACCCGCGCGCAATTA 59.903 50.000 32.61 18.88 0.0 1.40 F
610 611 0.108615 CTTGTGCACGGAGGGAGTAG 60.109 60.000 13.13 0.00 0.0 2.57 F
646 647 0.320683 TGGTTGTCACTCTGCGATGG 60.321 55.000 0.00 0.00 0.0 3.51 F
771 773 0.523072 CCACAATTCCTCCACAAGCG 59.477 55.000 0.00 0.00 0.0 4.68 F
2111 2154 1.076024 TGCAAATGAAAGCCCCTCTCT 59.924 47.619 0.00 0.00 0.0 3.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2136 2179 1.406903 AAAGTTGCTGCTTGCTTCCT 58.593 45.000 0.00 0.0 43.37 3.36 R
2194 2241 2.173356 CCCTAGGAATCATGTGCCTTCA 59.827 50.000 11.48 0.0 33.28 3.02 R
2299 2461 2.246719 AAGCAGACAACAGACAGTCC 57.753 50.000 0.00 0.0 35.38 3.85 R
2430 2595 4.113354 GAGGCATACACGAAGTAGAAAGG 58.887 47.826 0.00 0.0 41.61 3.11 R
3818 3986 0.675633 GTGGCACCAAGCTGAACATT 59.324 50.000 6.29 0.0 44.79 2.71 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 9.070179 AGTATCAACATCATTGCATGCTTATTA 57.930 29.630 20.33 4.58 0.00 0.98
182 183 8.575589 TGATCTTATTTGCAACATGTACAAGTT 58.424 29.630 10.57 10.57 0.00 2.66
448 449 9.506018 TCTCATGTCACATGAATTTTCTCTTTA 57.494 29.630 20.99 0.00 0.00 1.85
499 500 3.177487 GCACGGACACTTAGCTAGTTAC 58.823 50.000 0.00 0.00 33.85 2.50
500 501 3.366679 GCACGGACACTTAGCTAGTTACA 60.367 47.826 0.00 0.00 33.85 2.41
501 502 4.413087 CACGGACACTTAGCTAGTTACAG 58.587 47.826 0.00 0.00 33.85 2.74
502 503 3.442977 ACGGACACTTAGCTAGTTACAGG 59.557 47.826 0.00 0.00 33.85 4.00
503 504 3.693085 CGGACACTTAGCTAGTTACAGGA 59.307 47.826 0.00 0.00 33.85 3.86
504 505 4.338682 CGGACACTTAGCTAGTTACAGGAT 59.661 45.833 0.00 0.00 33.85 3.24
505 506 5.163540 CGGACACTTAGCTAGTTACAGGATT 60.164 44.000 0.00 0.00 33.85 3.01
506 507 6.039047 CGGACACTTAGCTAGTTACAGGATTA 59.961 42.308 0.00 0.00 33.85 1.75
507 508 7.415989 CGGACACTTAGCTAGTTACAGGATTAA 60.416 40.741 0.00 0.00 33.85 1.40
508 509 7.705752 GGACACTTAGCTAGTTACAGGATTAAC 59.294 40.741 0.00 0.00 33.85 2.01
509 510 8.130671 ACACTTAGCTAGTTACAGGATTAACA 57.869 34.615 0.00 0.00 33.85 2.41
510 511 8.033626 ACACTTAGCTAGTTACAGGATTAACAC 58.966 37.037 0.00 0.00 33.85 3.32
511 512 8.033038 CACTTAGCTAGTTACAGGATTAACACA 58.967 37.037 0.00 0.00 33.85 3.72
512 513 8.033626 ACTTAGCTAGTTACAGGATTAACACAC 58.966 37.037 0.00 0.00 34.83 3.82
513 514 6.354794 AGCTAGTTACAGGATTAACACACA 57.645 37.500 0.00 0.00 34.83 3.72
514 515 6.765403 AGCTAGTTACAGGATTAACACACAA 58.235 36.000 0.00 0.00 34.83 3.33
515 516 7.221450 AGCTAGTTACAGGATTAACACACAAA 58.779 34.615 0.00 0.00 34.83 2.83
516 517 7.883311 AGCTAGTTACAGGATTAACACACAAAT 59.117 33.333 0.00 0.00 34.83 2.32
517 518 9.158233 GCTAGTTACAGGATTAACACACAAATA 57.842 33.333 0.00 0.00 34.83 1.40
523 524 8.574251 ACAGGATTAACACACAAATAATAGCA 57.426 30.769 0.00 0.00 0.00 3.49
524 525 9.189156 ACAGGATTAACACACAAATAATAGCAT 57.811 29.630 0.00 0.00 0.00 3.79
536 537 9.825972 CACAAATAATAGCATATCTAAAACCCG 57.174 33.333 0.00 0.00 0.00 5.28
537 538 8.512138 ACAAATAATAGCATATCTAAAACCCGC 58.488 33.333 0.00 0.00 0.00 6.13
538 539 6.903883 ATAATAGCATATCTAAAACCCGCG 57.096 37.500 0.00 0.00 0.00 6.46
539 540 1.226746 AGCATATCTAAAACCCGCGC 58.773 50.000 0.00 0.00 0.00 6.86
540 541 0.110823 GCATATCTAAAACCCGCGCG 60.111 55.000 25.67 25.67 0.00 6.86
541 542 0.110823 CATATCTAAAACCCGCGCGC 60.111 55.000 27.36 23.91 0.00 6.86
542 543 0.531090 ATATCTAAAACCCGCGCGCA 60.531 50.000 32.61 8.37 0.00 6.09
543 544 0.740164 TATCTAAAACCCGCGCGCAA 60.740 50.000 32.61 5.61 0.00 4.85
544 545 1.373590 ATCTAAAACCCGCGCGCAAT 61.374 50.000 32.61 12.87 0.00 3.56
545 546 1.154112 CTAAAACCCGCGCGCAATT 60.154 52.632 32.61 18.51 0.00 2.32
546 547 0.097325 CTAAAACCCGCGCGCAATTA 59.903 50.000 32.61 18.88 0.00 1.40
547 548 0.520404 TAAAACCCGCGCGCAATTAA 59.480 45.000 32.61 10.39 0.00 1.40
548 549 0.109039 AAAACCCGCGCGCAATTAAT 60.109 45.000 32.61 9.88 0.00 1.40
549 550 0.109039 AAACCCGCGCGCAATTAATT 60.109 45.000 32.61 14.52 0.00 1.40
550 551 0.109039 AACCCGCGCGCAATTAATTT 60.109 45.000 32.61 10.43 0.00 1.82
551 552 0.733729 ACCCGCGCGCAATTAATTTA 59.266 45.000 32.61 0.00 0.00 1.40
552 553 1.335496 ACCCGCGCGCAATTAATTTAT 59.665 42.857 32.61 0.28 0.00 1.40
553 554 2.223618 ACCCGCGCGCAATTAATTTATT 60.224 40.909 32.61 0.00 0.00 1.40
554 555 2.152868 CCCGCGCGCAATTAATTTATTG 59.847 45.455 32.61 11.86 38.31 1.90
576 577 7.748031 TTGCCTAAATATTTAATGTGCGTTG 57.252 32.000 9.15 0.00 0.00 4.10
577 578 5.746245 TGCCTAAATATTTAATGTGCGTTGC 59.254 36.000 9.15 2.80 0.00 4.17
578 579 5.746245 GCCTAAATATTTAATGTGCGTTGCA 59.254 36.000 9.15 0.00 35.60 4.08
587 588 3.039002 TGCGTTGCACGTGCGTAT 61.039 55.556 33.22 0.00 44.73 3.06
588 589 2.172419 GCGTTGCACGTGCGTATT 59.828 55.556 33.22 0.00 44.73 1.89
589 590 1.439693 GCGTTGCACGTGCGTATTT 60.440 52.632 33.22 0.00 44.73 1.40
590 591 0.179245 GCGTTGCACGTGCGTATTTA 60.179 50.000 33.22 14.00 44.73 1.40
591 592 1.505898 CGTTGCACGTGCGTATTTAC 58.494 50.000 33.22 21.25 45.83 2.01
592 593 1.125384 CGTTGCACGTGCGTATTTACT 59.875 47.619 33.22 0.00 45.83 2.24
593 594 2.410517 CGTTGCACGTGCGTATTTACTT 60.411 45.455 33.22 0.00 45.83 2.24
594 595 2.865556 TGCACGTGCGTATTTACTTG 57.134 45.000 33.22 0.00 45.83 3.16
595 596 2.136728 TGCACGTGCGTATTTACTTGT 58.863 42.857 33.22 0.00 45.83 3.16
596 597 2.096664 TGCACGTGCGTATTTACTTGTG 60.097 45.455 33.22 0.00 45.83 3.33
597 598 2.492001 CACGTGCGTATTTACTTGTGC 58.508 47.619 0.82 0.00 0.00 4.57
598 599 2.096664 CACGTGCGTATTTACTTGTGCA 60.097 45.455 0.82 0.00 0.00 4.57
599 600 2.096614 ACGTGCGTATTTACTTGTGCAC 60.097 45.455 10.75 10.75 46.73 4.57
600 601 2.492001 GTGCGTATTTACTTGTGCACG 58.508 47.619 13.13 0.65 42.53 5.34
601 602 1.461512 TGCGTATTTACTTGTGCACGG 59.538 47.619 13.13 10.15 0.00 4.94
602 603 1.727880 GCGTATTTACTTGTGCACGGA 59.272 47.619 13.13 2.17 0.00 4.69
603 604 2.222729 GCGTATTTACTTGTGCACGGAG 60.223 50.000 13.13 14.82 0.00 4.63
604 605 2.347452 CGTATTTACTTGTGCACGGAGG 59.653 50.000 20.12 9.89 0.00 4.30
605 606 1.821216 ATTTACTTGTGCACGGAGGG 58.179 50.000 20.12 8.38 0.00 4.30
606 607 0.759959 TTTACTTGTGCACGGAGGGA 59.240 50.000 20.12 8.33 0.00 4.20
607 608 0.320374 TTACTTGTGCACGGAGGGAG 59.680 55.000 20.12 10.46 0.00 4.30
608 609 0.830444 TACTTGTGCACGGAGGGAGT 60.830 55.000 20.12 14.59 0.00 3.85
609 610 0.830444 ACTTGTGCACGGAGGGAGTA 60.830 55.000 20.12 0.00 0.00 2.59
610 611 0.108615 CTTGTGCACGGAGGGAGTAG 60.109 60.000 13.13 0.00 0.00 2.57
611 612 0.541063 TTGTGCACGGAGGGAGTAGA 60.541 55.000 13.13 0.00 0.00 2.59
612 613 0.541063 TGTGCACGGAGGGAGTAGAA 60.541 55.000 13.13 0.00 0.00 2.10
613 614 0.824759 GTGCACGGAGGGAGTAGAAT 59.175 55.000 0.00 0.00 0.00 2.40
614 615 2.029623 GTGCACGGAGGGAGTAGAATA 58.970 52.381 0.00 0.00 0.00 1.75
615 616 2.429610 GTGCACGGAGGGAGTAGAATAA 59.570 50.000 0.00 0.00 0.00 1.40
616 617 3.101437 TGCACGGAGGGAGTAGAATAAA 58.899 45.455 0.00 0.00 0.00 1.40
617 618 3.132289 TGCACGGAGGGAGTAGAATAAAG 59.868 47.826 0.00 0.00 0.00 1.85
618 619 3.718815 CACGGAGGGAGTAGAATAAAGC 58.281 50.000 0.00 0.00 0.00 3.51
619 620 3.132289 CACGGAGGGAGTAGAATAAAGCA 59.868 47.826 0.00 0.00 0.00 3.91
620 621 3.773119 ACGGAGGGAGTAGAATAAAGCAA 59.227 43.478 0.00 0.00 0.00 3.91
621 622 4.224370 ACGGAGGGAGTAGAATAAAGCAAA 59.776 41.667 0.00 0.00 0.00 3.68
622 623 5.183228 CGGAGGGAGTAGAATAAAGCAAAA 58.817 41.667 0.00 0.00 0.00 2.44
623 624 5.294552 CGGAGGGAGTAGAATAAAGCAAAAG 59.705 44.000 0.00 0.00 0.00 2.27
624 625 5.590663 GGAGGGAGTAGAATAAAGCAAAAGG 59.409 44.000 0.00 0.00 0.00 3.11
625 626 6.388619 AGGGAGTAGAATAAAGCAAAAGGA 57.611 37.500 0.00 0.00 0.00 3.36
626 627 6.974795 AGGGAGTAGAATAAAGCAAAAGGAT 58.025 36.000 0.00 0.00 0.00 3.24
627 628 7.414266 AGGGAGTAGAATAAAGCAAAAGGATT 58.586 34.615 0.00 0.00 0.00 3.01
628 629 7.340487 AGGGAGTAGAATAAAGCAAAAGGATTG 59.660 37.037 0.00 0.00 0.00 2.67
629 630 7.416777 GGGAGTAGAATAAAGCAAAAGGATTGG 60.417 40.741 0.00 0.00 0.00 3.16
630 631 7.122799 GGAGTAGAATAAAGCAAAAGGATTGGT 59.877 37.037 0.00 0.00 0.00 3.67
631 632 8.422577 AGTAGAATAAAGCAAAAGGATTGGTT 57.577 30.769 0.18 0.18 41.27 3.67
632 633 8.306761 AGTAGAATAAAGCAAAAGGATTGGTTG 58.693 33.333 6.41 0.00 39.68 3.77
633 634 7.066307 AGAATAAAGCAAAAGGATTGGTTGT 57.934 32.000 6.41 1.39 39.68 3.32
634 635 7.154656 AGAATAAAGCAAAAGGATTGGTTGTC 58.845 34.615 6.41 5.42 39.68 3.18
635 636 4.751767 AAAGCAAAAGGATTGGTTGTCA 57.248 36.364 6.41 0.00 39.68 3.58
636 637 3.733443 AGCAAAAGGATTGGTTGTCAC 57.267 42.857 0.00 0.00 0.00 3.67
637 638 3.299503 AGCAAAAGGATTGGTTGTCACT 58.700 40.909 0.00 0.00 0.00 3.41
638 639 3.319122 AGCAAAAGGATTGGTTGTCACTC 59.681 43.478 0.00 0.00 0.00 3.51
639 640 3.319122 GCAAAAGGATTGGTTGTCACTCT 59.681 43.478 0.00 0.00 0.00 3.24
640 641 4.794003 GCAAAAGGATTGGTTGTCACTCTG 60.794 45.833 0.00 0.00 0.00 3.35
641 642 2.191128 AGGATTGGTTGTCACTCTGC 57.809 50.000 0.00 0.00 0.00 4.26
642 643 0.798776 GGATTGGTTGTCACTCTGCG 59.201 55.000 0.00 0.00 0.00 5.18
643 644 1.608025 GGATTGGTTGTCACTCTGCGA 60.608 52.381 0.00 0.00 0.00 5.10
644 645 2.350522 GATTGGTTGTCACTCTGCGAT 58.649 47.619 0.00 0.00 0.00 4.58
645 646 1.511850 TTGGTTGTCACTCTGCGATG 58.488 50.000 0.00 0.00 0.00 3.84
646 647 0.320683 TGGTTGTCACTCTGCGATGG 60.321 55.000 0.00 0.00 0.00 3.51
647 648 1.639298 GGTTGTCACTCTGCGATGGC 61.639 60.000 0.00 0.00 40.52 4.40
664 665 6.145535 GCGATGGCAAATATTTTCTTCTAGG 58.854 40.000 0.00 0.00 39.62 3.02
672 673 7.201857 GCAAATATTTTCTTCTAGGGTGAGCAT 60.202 37.037 0.00 0.00 0.00 3.79
704 705 4.824166 CGGGCACGTACGTCTCGG 62.824 72.222 19.94 13.42 34.81 4.63
743 745 2.669569 CAGACCAACCAGGCCACG 60.670 66.667 5.01 0.00 43.14 4.94
771 773 0.523072 CCACAATTCCTCCACAAGCG 59.477 55.000 0.00 0.00 0.00 4.68
788 790 4.033894 GCTGTCCGCGCAGATTAT 57.966 55.556 16.55 0.00 38.70 1.28
789 791 3.195041 GCTGTCCGCGCAGATTATA 57.805 52.632 16.55 0.00 38.70 0.98
858 875 8.735303 ATAACCAAGCAAAAACAAAACAAAAC 57.265 26.923 0.00 0.00 0.00 2.43
859 876 6.136541 ACCAAGCAAAAACAAAACAAAACA 57.863 29.167 0.00 0.00 0.00 2.83
1256 1273 1.302832 CCTGCCCGCTTTGACTCTT 60.303 57.895 0.00 0.00 0.00 2.85
1265 1282 1.195674 GCTTTGACTCTTCCTTCGCAC 59.804 52.381 0.00 0.00 0.00 5.34
1447 1464 9.985730 TCATATTGATTTTCTGCTCAACTTTTT 57.014 25.926 0.00 0.00 34.43 1.94
1492 1509 5.130292 AGCATTTGATGAGGTGTTTGAAG 57.870 39.130 0.00 0.00 0.00 3.02
1696 1713 1.278985 AGCTGACATTCCGTTGGATGA 59.721 47.619 0.00 0.00 0.00 2.92
1697 1714 2.083774 GCTGACATTCCGTTGGATGAA 58.916 47.619 0.00 0.00 0.00 2.57
1750 1767 9.228949 GATATTTGCTGACATGGAATCTTATCT 57.771 33.333 0.00 0.00 0.00 1.98
1798 1815 7.643579 AGTCTATTTGAACTGCTCTTTTTGTC 58.356 34.615 0.00 0.00 0.00 3.18
1836 1853 1.942657 TCATAAAGATGCCGCTTGCTC 59.057 47.619 0.00 0.00 42.00 4.26
1837 1854 1.672363 CATAAAGATGCCGCTTGCTCA 59.328 47.619 0.00 0.00 42.00 4.26
1843 1860 2.047844 GCCGCTTGCTCAGTCTCA 60.048 61.111 0.00 0.00 36.87 3.27
1857 1874 6.263842 TGCTCAGTCTCAGTTGAAATTTGAAT 59.736 34.615 0.00 0.00 0.00 2.57
1892 1909 1.141858 CTAGGCTTGATTCCAGACCCC 59.858 57.143 0.00 0.00 0.00 4.95
1893 1910 1.076705 GGCTTGATTCCAGACCCCC 60.077 63.158 0.00 0.00 0.00 5.40
1894 1911 1.575447 GGCTTGATTCCAGACCCCCT 61.575 60.000 0.00 0.00 0.00 4.79
1983 2003 5.125417 GTGCATGTGTGTTCCCTGTAATATT 59.875 40.000 0.00 0.00 0.00 1.28
2096 2139 2.346766 TCAGCTCACCTCTTTGCAAA 57.653 45.000 12.14 12.14 0.00 3.68
2111 2154 1.076024 TGCAAATGAAAGCCCCTCTCT 59.924 47.619 0.00 0.00 0.00 3.10
2185 2232 6.893554 TGCTCTATGTGTTAACCTCTACCTAA 59.106 38.462 2.48 0.00 0.00 2.69
2194 2241 1.907255 ACCTCTACCTAAGCGCCTTTT 59.093 47.619 2.29 0.00 0.00 2.27
2214 2261 3.565764 TGAAGGCACATGATTCCTAGG 57.434 47.619 0.82 0.82 0.00 3.02
2299 2461 7.948278 AAACACTAGTTGCTAAAGTAGACTG 57.052 36.000 0.00 0.26 40.45 3.51
2391 2553 5.354513 TCTGATAGAACTGTACTTGGAGACG 59.645 44.000 0.00 0.00 0.00 4.18
2424 2589 3.455910 TGCTTGTCATAGTAAGGCCTGAT 59.544 43.478 5.69 0.00 0.00 2.90
2430 2595 8.677148 TTGTCATAGTAAGGCCTGATAAATTC 57.323 34.615 5.69 0.00 0.00 2.17
2450 2615 4.119442 TCCTTTCTACTTCGTGTATGCC 57.881 45.455 0.00 0.00 0.00 4.40
2574 2739 1.920351 GAGTATGGAGGTTTTCCCCCA 59.080 52.381 0.00 0.00 46.19 4.96
2670 2835 5.394115 CCTTGCATACAAAATCAAGTACCCC 60.394 44.000 0.00 0.00 34.74 4.95
2820 2985 1.227674 CCCTGTGGCCGCTCTAATC 60.228 63.158 18.96 0.00 0.00 1.75
3194 3362 4.096984 GGGTATGAATTCTTTGCTGACAGG 59.903 45.833 7.05 0.00 0.00 4.00
3469 3637 7.285858 AGACAACATTGTAGATACTAGGGAGAC 59.714 40.741 0.00 0.00 42.43 3.36
3497 3665 2.158475 TGGGACAAATTGGTTCTCTGCT 60.158 45.455 0.00 0.00 31.92 4.24
3532 3700 7.848223 TCACAGTTACATGATTACCTCAATG 57.152 36.000 0.00 0.00 37.44 2.82
3533 3701 6.823182 TCACAGTTACATGATTACCTCAATGG 59.177 38.462 0.00 0.00 37.44 3.16
3561 3729 7.159372 CCGGCAAAACCTTAGTAGTATATCAT 58.841 38.462 0.00 0.00 35.61 2.45
3589 3757 9.656323 TGGAACTGGAATACATATTAGAGTACT 57.344 33.333 0.00 0.00 0.00 2.73
3662 3830 7.064609 GTCTGCTTTGTAACTATTGCACTATCA 59.935 37.037 0.00 0.00 0.00 2.15
3676 3844 7.473735 TTGCACTATCAATAACCCATTTCAA 57.526 32.000 0.00 0.00 0.00 2.69
3853 4021 4.335594 GGTGCCACTTGTATATCTTGTTCC 59.664 45.833 0.00 0.00 0.00 3.62
3873 4041 9.616156 TTGTTCCTAACAATAGACAAGTTTGTA 57.384 29.630 1.21 0.00 45.79 2.41
3882 4050 7.067008 ACAATAGACAAGTTTGTAGTGCTTTGT 59.933 33.333 0.00 1.38 42.43 2.83
3992 4160 4.702131 AGCGAAGGCAGATTTTACTTGAAT 59.298 37.500 0.00 0.00 43.41 2.57
4062 4230 1.073284 TGGGGGTCTTGTTAAGCTGAC 59.927 52.381 0.00 0.00 0.00 3.51
4063 4231 1.073284 GGGGGTCTTGTTAAGCTGACA 59.927 52.381 0.00 0.00 0.00 3.58
4113 4281 4.944962 TTGTGTTCCAGCAAGATTATCG 57.055 40.909 0.00 0.00 0.00 2.92
4117 4285 3.120792 GTTCCAGCAAGATTATCGCGTA 58.879 45.455 5.77 0.00 0.00 4.42
4125 4293 4.799678 CAAGATTATCGCGTAGACATCCT 58.200 43.478 5.77 0.00 0.00 3.24
4126 4294 5.619309 GCAAGATTATCGCGTAGACATCCTA 60.619 44.000 5.77 0.00 0.00 2.94
4127 4295 5.548706 AGATTATCGCGTAGACATCCTAC 57.451 43.478 5.77 0.00 43.34 3.18
4128 4296 5.001874 AGATTATCGCGTAGACATCCTACA 58.998 41.667 5.77 0.00 46.32 2.74
4131 4299 6.997239 TTATCGCGTAGACATCCTACATAT 57.003 37.500 5.77 0.00 46.32 1.78
4296 4464 2.750141 TCGGGCTAGTTCTACTGGAT 57.250 50.000 0.00 0.00 0.00 3.41
4297 4465 3.028094 TCGGGCTAGTTCTACTGGATT 57.972 47.619 0.00 0.00 0.00 3.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 2.673775 TTGGGACACACATTCCACAT 57.326 45.000 0.00 0.00 39.29 3.21
419 420 7.664731 AGAGAAAATTCATGTGACATGAGAGTT 59.335 33.333 25.20 19.55 0.00 3.01
510 511 9.825972 CGGGTTTTAGATATGCTATTATTTGTG 57.174 33.333 0.00 0.00 0.00 3.33
511 512 8.512138 GCGGGTTTTAGATATGCTATTATTTGT 58.488 33.333 0.00 0.00 0.00 2.83
512 513 7.692291 CGCGGGTTTTAGATATGCTATTATTTG 59.308 37.037 0.00 0.00 0.00 2.32
513 514 7.625606 GCGCGGGTTTTAGATATGCTATTATTT 60.626 37.037 8.83 0.00 0.00 1.40
514 515 6.183360 GCGCGGGTTTTAGATATGCTATTATT 60.183 38.462 8.83 0.00 0.00 1.40
515 516 5.293569 GCGCGGGTTTTAGATATGCTATTAT 59.706 40.000 8.83 0.00 0.00 1.28
516 517 4.628333 GCGCGGGTTTTAGATATGCTATTA 59.372 41.667 8.83 0.00 0.00 0.98
517 518 3.435671 GCGCGGGTTTTAGATATGCTATT 59.564 43.478 8.83 0.00 0.00 1.73
518 519 3.000727 GCGCGGGTTTTAGATATGCTAT 58.999 45.455 8.83 0.00 0.00 2.97
519 520 2.409975 GCGCGGGTTTTAGATATGCTA 58.590 47.619 8.83 0.00 0.00 3.49
520 521 1.226746 GCGCGGGTTTTAGATATGCT 58.773 50.000 8.83 0.00 0.00 3.79
521 522 0.110823 CGCGCGGGTTTTAGATATGC 60.111 55.000 24.84 0.00 0.00 3.14
522 523 0.110823 GCGCGCGGGTTTTAGATATG 60.111 55.000 33.06 0.00 0.00 1.78
523 524 0.531090 TGCGCGCGGGTTTTAGATAT 60.531 50.000 33.06 0.00 0.00 1.63
524 525 0.740164 TTGCGCGCGGGTTTTAGATA 60.740 50.000 33.06 0.00 0.00 1.98
525 526 1.373590 ATTGCGCGCGGGTTTTAGAT 61.374 50.000 33.06 5.82 0.00 1.98
526 527 1.579084 AATTGCGCGCGGGTTTTAGA 61.579 50.000 33.06 1.38 0.00 2.10
527 528 0.097325 TAATTGCGCGCGGGTTTTAG 59.903 50.000 33.06 0.13 0.00 1.85
528 529 0.520404 TTAATTGCGCGCGGGTTTTA 59.480 45.000 33.06 15.52 0.00 1.52
529 530 0.109039 ATTAATTGCGCGCGGGTTTT 60.109 45.000 33.06 16.52 0.00 2.43
530 531 0.109039 AATTAATTGCGCGCGGGTTT 60.109 45.000 33.06 18.29 0.00 3.27
531 532 0.109039 AAATTAATTGCGCGCGGGTT 60.109 45.000 33.06 21.72 0.00 4.11
532 533 0.733729 TAAATTAATTGCGCGCGGGT 59.266 45.000 33.06 15.94 0.00 5.28
533 534 2.044888 ATAAATTAATTGCGCGCGGG 57.955 45.000 33.06 20.05 0.00 6.13
534 535 3.401518 CAATAAATTAATTGCGCGCGG 57.598 42.857 33.06 13.66 30.59 6.46
550 551 9.457110 CAACGCACATTAAATATTTAGGCAATA 57.543 29.630 7.91 0.00 0.00 1.90
551 552 7.042791 GCAACGCACATTAAATATTTAGGCAAT 60.043 33.333 7.91 0.00 0.00 3.56
552 553 6.254589 GCAACGCACATTAAATATTTAGGCAA 59.745 34.615 7.91 0.00 0.00 4.52
553 554 5.746245 GCAACGCACATTAAATATTTAGGCA 59.254 36.000 7.91 0.00 0.00 4.75
554 555 5.746245 TGCAACGCACATTAAATATTTAGGC 59.254 36.000 7.91 9.55 31.71 3.93
573 574 2.867456 AGTAAATACGCACGTGCAAC 57.133 45.000 37.03 23.21 42.21 4.17
574 575 2.544686 ACAAGTAAATACGCACGTGCAA 59.455 40.909 37.03 25.76 42.21 4.08
575 576 2.096664 CACAAGTAAATACGCACGTGCA 60.097 45.455 37.03 21.62 42.21 4.57
576 577 2.492001 CACAAGTAAATACGCACGTGC 58.508 47.619 30.42 30.42 37.78 5.34
577 578 2.096664 TGCACAAGTAAATACGCACGTG 60.097 45.455 12.28 12.28 0.00 4.49
578 579 2.096614 GTGCACAAGTAAATACGCACGT 60.097 45.455 13.17 0.00 40.16 4.49
579 580 2.492001 GTGCACAAGTAAATACGCACG 58.508 47.619 13.17 0.00 40.16 5.34
580 581 2.492001 CGTGCACAAGTAAATACGCAC 58.508 47.619 18.64 0.00 44.75 5.34
581 582 1.461512 CCGTGCACAAGTAAATACGCA 59.538 47.619 18.64 0.00 0.00 5.24
582 583 1.727880 TCCGTGCACAAGTAAATACGC 59.272 47.619 18.64 0.00 0.00 4.42
583 584 2.347452 CCTCCGTGCACAAGTAAATACG 59.653 50.000 18.64 0.00 0.00 3.06
584 585 2.676342 CCCTCCGTGCACAAGTAAATAC 59.324 50.000 18.64 0.00 0.00 1.89
585 586 2.568062 TCCCTCCGTGCACAAGTAAATA 59.432 45.455 18.64 0.00 0.00 1.40
586 587 1.349688 TCCCTCCGTGCACAAGTAAAT 59.650 47.619 18.64 0.00 0.00 1.40
587 588 0.759959 TCCCTCCGTGCACAAGTAAA 59.240 50.000 18.64 0.00 0.00 2.01
588 589 0.320374 CTCCCTCCGTGCACAAGTAA 59.680 55.000 18.64 3.11 0.00 2.24
589 590 0.830444 ACTCCCTCCGTGCACAAGTA 60.830 55.000 18.64 3.42 0.00 2.24
590 591 0.830444 TACTCCCTCCGTGCACAAGT 60.830 55.000 18.64 11.54 0.00 3.16
591 592 0.108615 CTACTCCCTCCGTGCACAAG 60.109 60.000 18.64 13.14 0.00 3.16
592 593 0.541063 TCTACTCCCTCCGTGCACAA 60.541 55.000 18.64 2.94 0.00 3.33
593 594 0.541063 TTCTACTCCCTCCGTGCACA 60.541 55.000 18.64 0.00 0.00 4.57
594 595 0.824759 ATTCTACTCCCTCCGTGCAC 59.175 55.000 6.82 6.82 0.00 4.57
595 596 2.447408 TATTCTACTCCCTCCGTGCA 57.553 50.000 0.00 0.00 0.00 4.57
596 597 3.718815 CTTTATTCTACTCCCTCCGTGC 58.281 50.000 0.00 0.00 0.00 5.34
597 598 3.132289 TGCTTTATTCTACTCCCTCCGTG 59.868 47.826 0.00 0.00 0.00 4.94
598 599 3.371965 TGCTTTATTCTACTCCCTCCGT 58.628 45.455 0.00 0.00 0.00 4.69
599 600 4.402056 TTGCTTTATTCTACTCCCTCCG 57.598 45.455 0.00 0.00 0.00 4.63
600 601 5.590663 CCTTTTGCTTTATTCTACTCCCTCC 59.409 44.000 0.00 0.00 0.00 4.30
601 602 6.415573 TCCTTTTGCTTTATTCTACTCCCTC 58.584 40.000 0.00 0.00 0.00 4.30
602 603 6.388619 TCCTTTTGCTTTATTCTACTCCCT 57.611 37.500 0.00 0.00 0.00 4.20
603 604 7.416777 CCAATCCTTTTGCTTTATTCTACTCCC 60.417 40.741 0.00 0.00 0.00 4.30
604 605 7.122799 ACCAATCCTTTTGCTTTATTCTACTCC 59.877 37.037 0.00 0.00 0.00 3.85
605 606 8.056407 ACCAATCCTTTTGCTTTATTCTACTC 57.944 34.615 0.00 0.00 0.00 2.59
606 607 8.306761 CAACCAATCCTTTTGCTTTATTCTACT 58.693 33.333 0.00 0.00 0.00 2.57
607 608 8.088365 ACAACCAATCCTTTTGCTTTATTCTAC 58.912 33.333 0.00 0.00 0.00 2.59
608 609 8.189119 ACAACCAATCCTTTTGCTTTATTCTA 57.811 30.769 0.00 0.00 0.00 2.10
609 610 7.066307 ACAACCAATCCTTTTGCTTTATTCT 57.934 32.000 0.00 0.00 0.00 2.40
610 611 6.928492 TGACAACCAATCCTTTTGCTTTATTC 59.072 34.615 0.00 0.00 0.00 1.75
611 612 6.705825 GTGACAACCAATCCTTTTGCTTTATT 59.294 34.615 0.00 0.00 0.00 1.40
612 613 6.041979 AGTGACAACCAATCCTTTTGCTTTAT 59.958 34.615 0.00 0.00 0.00 1.40
613 614 5.362430 AGTGACAACCAATCCTTTTGCTTTA 59.638 36.000 0.00 0.00 0.00 1.85
614 615 4.162131 AGTGACAACCAATCCTTTTGCTTT 59.838 37.500 0.00 0.00 0.00 3.51
615 616 3.706086 AGTGACAACCAATCCTTTTGCTT 59.294 39.130 0.00 0.00 0.00 3.91
616 617 3.299503 AGTGACAACCAATCCTTTTGCT 58.700 40.909 0.00 0.00 0.00 3.91
617 618 3.319122 AGAGTGACAACCAATCCTTTTGC 59.681 43.478 0.00 0.00 40.51 3.68
618 619 4.794003 GCAGAGTGACAACCAATCCTTTTG 60.794 45.833 0.00 0.00 40.51 2.44
619 620 3.319122 GCAGAGTGACAACCAATCCTTTT 59.681 43.478 0.00 0.00 40.51 2.27
620 621 2.887152 GCAGAGTGACAACCAATCCTTT 59.113 45.455 0.00 0.00 40.51 3.11
621 622 2.508526 GCAGAGTGACAACCAATCCTT 58.491 47.619 0.00 0.00 40.51 3.36
622 623 1.609061 CGCAGAGTGACAACCAATCCT 60.609 52.381 0.00 0.00 40.51 3.24
623 624 0.798776 CGCAGAGTGACAACCAATCC 59.201 55.000 0.00 0.00 40.51 3.01
624 625 1.795768 TCGCAGAGTGACAACCAATC 58.204 50.000 0.00 0.00 39.97 2.67
625 626 2.079158 CATCGCAGAGTGACAACCAAT 58.921 47.619 0.00 0.00 43.63 3.16
626 627 1.511850 CATCGCAGAGTGACAACCAA 58.488 50.000 0.00 0.00 43.63 3.67
627 628 0.320683 CCATCGCAGAGTGACAACCA 60.321 55.000 0.00 0.00 43.63 3.67
628 629 1.639298 GCCATCGCAGAGTGACAACC 61.639 60.000 0.00 0.00 43.63 3.77
629 630 0.950555 TGCCATCGCAGAGTGACAAC 60.951 55.000 0.00 0.00 43.63 3.32
630 631 1.370810 TGCCATCGCAGAGTGACAA 59.629 52.632 0.00 0.00 43.63 3.18
631 632 3.059099 TGCCATCGCAGAGTGACA 58.941 55.556 0.00 0.00 43.63 3.58
639 640 5.581126 AGAAGAAAATATTTGCCATCGCA 57.419 34.783 0.39 0.00 45.49 5.10
640 641 6.145535 CCTAGAAGAAAATATTTGCCATCGC 58.854 40.000 0.39 0.00 0.00 4.58
641 642 6.263168 ACCCTAGAAGAAAATATTTGCCATCG 59.737 38.462 0.39 0.00 0.00 3.84
642 643 7.285401 TCACCCTAGAAGAAAATATTTGCCATC 59.715 37.037 0.39 1.73 0.00 3.51
643 644 7.125391 TCACCCTAGAAGAAAATATTTGCCAT 58.875 34.615 0.39 0.00 0.00 4.40
644 645 6.489603 TCACCCTAGAAGAAAATATTTGCCA 58.510 36.000 0.39 0.00 0.00 4.92
645 646 6.460261 GCTCACCCTAGAAGAAAATATTTGCC 60.460 42.308 0.39 0.00 0.00 4.52
646 647 6.095440 TGCTCACCCTAGAAGAAAATATTTGC 59.905 38.462 0.39 0.00 0.00 3.68
647 648 7.630242 TGCTCACCCTAGAAGAAAATATTTG 57.370 36.000 0.39 0.00 0.00 2.32
648 649 9.566432 CTATGCTCACCCTAGAAGAAAATATTT 57.434 33.333 0.00 0.00 0.00 1.40
649 650 8.718656 ACTATGCTCACCCTAGAAGAAAATATT 58.281 33.333 0.00 0.00 0.00 1.28
650 651 8.268878 ACTATGCTCACCCTAGAAGAAAATAT 57.731 34.615 0.00 0.00 0.00 1.28
651 652 7.202011 GGACTATGCTCACCCTAGAAGAAAATA 60.202 40.741 0.00 0.00 0.00 1.40
652 653 6.408662 GGACTATGCTCACCCTAGAAGAAAAT 60.409 42.308 0.00 0.00 0.00 1.82
653 654 5.104900 GGACTATGCTCACCCTAGAAGAAAA 60.105 44.000 0.00 0.00 0.00 2.29
654 655 4.406003 GGACTATGCTCACCCTAGAAGAAA 59.594 45.833 0.00 0.00 0.00 2.52
655 656 3.961408 GGACTATGCTCACCCTAGAAGAA 59.039 47.826 0.00 0.00 0.00 2.52
656 657 3.567397 GGACTATGCTCACCCTAGAAGA 58.433 50.000 0.00 0.00 0.00 2.87
657 658 2.294791 CGGACTATGCTCACCCTAGAAG 59.705 54.545 0.00 0.00 0.00 2.85
658 659 2.307768 CGGACTATGCTCACCCTAGAA 58.692 52.381 0.00 0.00 0.00 2.10
659 660 1.214673 ACGGACTATGCTCACCCTAGA 59.785 52.381 0.00 0.00 0.00 2.43
660 661 1.693627 ACGGACTATGCTCACCCTAG 58.306 55.000 0.00 0.00 0.00 3.02
661 662 2.488528 CCTACGGACTATGCTCACCCTA 60.489 54.545 0.00 0.00 0.00 3.53
662 663 1.693627 CTACGGACTATGCTCACCCT 58.306 55.000 0.00 0.00 0.00 4.34
663 664 0.674534 CCTACGGACTATGCTCACCC 59.325 60.000 0.00 0.00 0.00 4.61
664 665 1.609555 CTCCTACGGACTATGCTCACC 59.390 57.143 0.00 0.00 0.00 4.02
771 773 1.714794 ATATAATCTGCGCGGACAGC 58.285 50.000 23.67 0.00 43.95 4.40
855 872 2.486918 CCCGTCGACTAGGTTTTGTTT 58.513 47.619 14.70 0.00 0.00 2.83
856 873 1.270465 CCCCGTCGACTAGGTTTTGTT 60.270 52.381 14.70 0.00 0.00 2.83
857 874 0.319405 CCCCGTCGACTAGGTTTTGT 59.681 55.000 14.70 0.00 0.00 2.83
858 875 1.017701 GCCCCGTCGACTAGGTTTTG 61.018 60.000 14.70 2.96 0.00 2.44
859 876 1.294459 GCCCCGTCGACTAGGTTTT 59.706 57.895 14.70 0.00 0.00 2.43
908 925 1.219213 GAGGGGGAGGAGAGAGATTGA 59.781 57.143 0.00 0.00 0.00 2.57
1256 1273 4.270834 ACTAGATCTAACTGTGCGAAGGA 58.729 43.478 3.57 0.00 0.00 3.36
1265 1282 3.791887 CGCGACCAAACTAGATCTAACTG 59.208 47.826 0.00 1.69 0.00 3.16
1306 1323 2.734723 CCGCGACGCAGATATGGG 60.735 66.667 21.35 6.97 0.00 4.00
1447 1464 6.293955 GCTTTCAAGGTTCTAAACATACAGCA 60.294 38.462 0.00 0.00 0.00 4.41
1680 1697 7.925993 TGTATATTTTCATCCAACGGAATGTC 58.074 34.615 0.00 0.00 34.34 3.06
1687 1704 8.909708 ACATTGTTGTATATTTTCATCCAACG 57.090 30.769 0.00 0.00 36.00 4.10
1750 1767 7.553334 ACTACTTTGAATGCCTAAATAGACGA 58.447 34.615 0.00 0.00 0.00 4.20
1778 1795 6.038356 CACTGACAAAAAGAGCAGTTCAAAT 58.962 36.000 0.00 0.00 39.40 2.32
1785 1802 3.252701 AGCATCACTGACAAAAAGAGCAG 59.747 43.478 0.00 0.00 34.65 4.24
1836 1853 7.487189 GGCATATTCAAATTTCAACTGAGACTG 59.513 37.037 0.00 0.00 0.00 3.51
1837 1854 7.363268 GGGCATATTCAAATTTCAACTGAGACT 60.363 37.037 0.00 0.00 0.00 3.24
1843 1860 6.855763 TGAGGGCATATTCAAATTTCAACT 57.144 33.333 0.00 0.00 0.00 3.16
1857 1874 1.768870 GCCTAGAACCTTGAGGGCATA 59.231 52.381 1.54 0.00 40.27 3.14
1892 1909 3.131223 TCAGCATAGAGAAAACGAGGAGG 59.869 47.826 0.00 0.00 0.00 4.30
1893 1910 4.097135 TCTCAGCATAGAGAAAACGAGGAG 59.903 45.833 0.00 0.00 41.45 3.69
1894 1911 4.017126 TCTCAGCATAGAGAAAACGAGGA 58.983 43.478 0.00 0.00 41.45 3.71
1983 2003 3.195825 GGTCACTAAAGGAGCTTGCTAGA 59.804 47.826 0.00 0.00 0.00 2.43
2096 2139 1.988107 TGTTCAGAGAGGGGCTTTCAT 59.012 47.619 0.00 0.00 0.00 2.57
2136 2179 1.406903 AAAGTTGCTGCTTGCTTCCT 58.593 45.000 0.00 0.00 43.37 3.36
2154 2197 5.381757 AGGTTAACACATAGAGCACCAAAA 58.618 37.500 8.10 0.00 0.00 2.44
2194 2241 2.173356 CCCTAGGAATCATGTGCCTTCA 59.827 50.000 11.48 0.00 33.28 3.02
2214 2261 3.603158 ACCACACAGTTTTGAAAACCC 57.397 42.857 16.45 0.00 0.00 4.11
2299 2461 2.246719 AAGCAGACAACAGACAGTCC 57.753 50.000 0.00 0.00 35.38 3.85
2349 2511 5.378230 TCAGACAGAGGAATGCCAATAAT 57.622 39.130 0.00 0.00 36.29 1.28
2424 2589 7.279313 GGCATACACGAAGTAGAAAGGAATTTA 59.721 37.037 0.00 0.00 41.61 1.40
2430 2595 4.113354 GAGGCATACACGAAGTAGAAAGG 58.887 47.826 0.00 0.00 41.61 3.11
2574 2739 6.517529 CGCCTAAGAATAGATAGTTGGCTTCT 60.518 42.308 0.00 0.00 36.08 2.85
2796 2961 4.329545 GCGGCCACAGGGAGACAA 62.330 66.667 2.24 0.00 35.59 3.18
2820 2985 8.964150 CCATGCATGCATAATATTTTATCATCG 58.036 33.333 31.73 13.69 34.91 3.84
3140 3308 8.856103 TCGACAACCTATATCAGATGAAATACA 58.144 33.333 0.00 0.00 0.00 2.29
3194 3362 3.427503 CCGAAAATATGGTGACCAGTTGC 60.428 47.826 11.23 1.94 36.75 4.17
3197 3365 2.026262 AGCCGAAAATATGGTGACCAGT 60.026 45.455 11.23 0.00 36.75 4.00
3469 3637 5.264395 AGAACCAATTTGTCCCAGAATAGG 58.736 41.667 0.00 0.00 0.00 2.57
3497 3665 9.719355 AATCATGTAACTGTGATACAAGTGTTA 57.281 29.630 0.00 0.00 36.88 2.41
3532 3700 1.176619 ACTAAGGTTTTGCCGGTGCC 61.177 55.000 1.90 0.00 43.70 5.01
3533 3701 1.467342 CTACTAAGGTTTTGCCGGTGC 59.533 52.381 1.90 0.00 43.70 5.01
3621 3789 1.406614 GCAGACCTGTCAGATTCCCAG 60.407 57.143 0.00 0.00 0.00 4.45
3676 3844 7.607615 AGCATTCCTTTGGCAAATCTAATAT 57.392 32.000 13.89 3.87 0.00 1.28
3688 3856 4.280174 CCATGGAGAATAGCATTCCTTTGG 59.720 45.833 5.56 0.00 32.55 3.28
3689 3857 4.891756 ACCATGGAGAATAGCATTCCTTTG 59.108 41.667 21.47 0.00 32.12 2.77
3818 3986 0.675633 GTGGCACCAAGCTGAACATT 59.324 50.000 6.29 0.00 44.79 2.71
3853 4021 8.311650 AGCACTACAAACTTGTCTATTGTTAG 57.688 34.615 0.00 0.00 42.35 2.34
3873 4041 2.487934 CTGAGCAGTGTACAAAGCACT 58.512 47.619 19.33 4.59 46.86 4.40
3882 4050 2.184020 AATGCCCGCTGAGCAGTGTA 62.184 55.000 4.88 0.00 44.90 2.90
4062 4230 4.995124 ACATTTGTAGTAGAGCGGTACTG 58.005 43.478 10.37 0.00 34.91 2.74
4063 4231 5.393896 GGAACATTTGTAGTAGAGCGGTACT 60.394 44.000 6.32 6.32 37.09 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.